data_1QC1 # _entry.id 1QC1 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.386 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1QC1 pdb_00001qc1 10.2210/pdb1qc1/pdb NDB BD0015 ? ? RCSB RCSB009090 ? ? WWPDB D_1000009090 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1999-05-28 2 'Structure model' 1 1 2008-04-27 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2017-10-04 5 'Structure model' 1 4 2024-02-14 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Refinement description' 4 5 'Structure model' 'Data collection' 5 5 'Structure model' 'Database references' 6 5 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' software 2 5 'Structure model' chem_comp_atom 3 5 'Structure model' chem_comp_bond 4 5 'Structure model' database_2 5 5 'Structure model' pdbx_struct_conn_angle 6 5 'Structure model' struct_conn 7 5 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 5 'Structure model' '_database_2.pdbx_DOI' 2 5 'Structure model' '_database_2.pdbx_database_accession' 3 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_asym_id' 4 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 5 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 6 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_symmetry' 7 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_asym_id' 8 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 9 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 10 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_symmetry' 11 5 'Structure model' '_pdbx_struct_conn_angle.value' 12 5 'Structure model' '_struct_conn.pdbx_dist_value' 13 5 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 14 5 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 15 5 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 16 5 'Structure model' '_struct_conn.ptnr1_label_asym_id' 17 5 'Structure model' '_struct_conn.ptnr1_label_atom_id' 18 5 'Structure model' '_struct_conn.ptnr1_label_comp_id' 19 5 'Structure model' '_struct_conn.ptnr1_symmetry' 20 5 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 21 5 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 22 5 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 23 5 'Structure model' '_struct_conn.ptnr2_label_asym_id' 24 5 'Structure model' '_struct_conn.ptnr2_label_atom_id' 25 5 'Structure model' '_struct_conn.ptnr2_label_comp_id' 26 5 'Structure model' '_struct_conn.ptnr2_symmetry' 27 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 28 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 29 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1QC1 _pdbx_database_status.recvd_initial_deposition_date 1999-05-14 _pdbx_database_status.deposit_site NDB _pdbx_database_status.process_site NDB _pdbx_database_status.status_code_sf REL _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Timsit, Y.' 1 'Moras, D.' 2 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary 'DNA self-fitting: the double helix directs the geometry of its supramolecular assembly' 'EMBO J.' 13 2737 2746 1994 EMJODG UK 0261-4189 0897 ? 8026458 ? 1 'Left-handed DNA crossovers. Implications for DNA-DNA recognition and structural alterations' J.Biomol.Struct.Dyn. 16 775 785 1999 JBSDD6 US 0739-1102 0646 ? ? ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Timsit, Y.' 1 ? primary 'Moras, D.' 2 ? 1 'Timsit, Y.' 3 ? 1 'Shatzky-Schwartz, M.' 4 ? 1 'Shakked, Z.' 5 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "5'-D(*CP*CP*GP*CP*CP*GP*GP*CP*GP*G)-3'" 3046.980 2 ? ? ? ? 2 non-polymer syn 'MAGNESIUM ION' 24.305 4 ? ? ? ? 3 water nat water 18.015 85 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code '(DC)(DC)(DG)(DC)(DC)(DG)(DG)(DC)(DG)(DG)' _entity_poly.pdbx_seq_one_letter_code_can CCGCCGGCGG _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'MAGNESIUM ION' MG 3 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DC n 1 3 DG n 1 4 DC n 1 5 DC n 1 6 DG n 1 7 DG n 1 8 DC n 1 9 DG n 1 10 DG n # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 HOH non-polymer . WATER ? 'H2 O' 18.015 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC C A . n A 1 2 DC 2 2 2 DC C A . n A 1 3 DG 3 3 3 DG G A . n A 1 4 DC 4 4 4 DC C A . n A 1 5 DC 5 5 5 DC C A . n A 1 6 DG 6 6 6 DG G A . n A 1 7 DG 7 7 7 DG G A . n A 1 8 DC 8 8 8 DC C A . n A 1 9 DG 9 9 9 DG G A . n A 1 10 DG 10 10 10 DG G A . n B 1 1 DC 1 11 11 DC C B . n B 1 2 DC 2 12 12 DC C B . n B 1 3 DG 3 13 13 DG G B . n B 1 4 DC 4 14 14 DC C B . n B 1 5 DC 5 15 15 DC C B . n B 1 6 DG 6 16 16 DG G B . n B 1 7 DG 7 17 17 DG G B . n B 1 8 DC 8 18 18 DC C B . n B 1 9 DG 9 19 19 DG G B . n B 1 10 DG 10 20 20 DG G B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG 1 102 33 MG TIP A . D 2 MG 1 101 29 MG TIP B . E 2 MG 1 103 37 MG TIP B . F 2 MG 1 104 38 MG TIP B . G 3 HOH 1 103 21 HOH TIP A . G 3 HOH 2 104 22 HOH TIP A . G 3 HOH 3 105 22 HOH TIP A . G 3 HOH 4 106 25 HOH TIP A . G 3 HOH 5 107 25 HOH TIP A . G 3 HOH 6 108 25 HOH TIP A . G 3 HOH 7 109 27 HOH TIP A . G 3 HOH 8 110 27 HOH TIP A . G 3 HOH 9 111 27 HOH TIP A . G 3 HOH 10 112 28 HOH TIP A . G 3 HOH 11 113 28 HOH TIP A . G 3 HOH 12 114 28 HOH TIP A . G 3 HOH 13 115 28 HOH TIP A . G 3 HOH 14 116 29 HOH TIP A . G 3 HOH 15 117 29 HOH TIP A . G 3 HOH 16 118 29 HOH TIP A . G 3 HOH 17 119 30 HOH TIP A . G 3 HOH 18 120 30 HOH TIP A . G 3 HOH 19 121 31 HOH TIP A . G 3 HOH 20 122 32 HOH TIP A . G 3 HOH 21 123 32 HOH TIP A . G 3 HOH 22 124 32 HOH TIP A . G 3 HOH 23 125 33 HOH TIP A . G 3 HOH 24 126 33 HOH TIP A . G 3 HOH 25 127 33 HOH TIP A . G 3 HOH 26 128 33 HOH TIP A . G 3 HOH 27 129 33 HOH TIP A . G 3 HOH 28 130 33 HOH TIP A . G 3 HOH 29 131 34 HOH TIP A . G 3 HOH 30 132 34 HOH TIP A . G 3 HOH 31 133 34 HOH TIP A . G 3 HOH 32 134 35 HOH TIP A . G 3 HOH 33 135 35 HOH TIP A . G 3 HOH 34 136 35 HOH TIP A . G 3 HOH 35 137 36 HOH TIP A . G 3 HOH 36 138 36 HOH TIP A . G 3 HOH 37 139 36 HOH TIP A . G 3 HOH 38 140 36 HOH TIP A . G 3 HOH 39 141 36 HOH TIP A . G 3 HOH 40 142 37 HOH TIP A . G 3 HOH 41 143 38 HOH TIP A . H 3 HOH 1 105 21 HOH TIP B . H 3 HOH 2 106 22 HOH TIP B . H 3 HOH 3 107 22 HOH TIP B . H 3 HOH 4 108 22 HOH TIP B . H 3 HOH 5 109 23 HOH TIP B . H 3 HOH 6 110 25 HOH TIP B . H 3 HOH 7 111 25 HOH TIP B . H 3 HOH 8 112 25 HOH TIP B . H 3 HOH 9 113 26 HOH TIP B . H 3 HOH 10 114 26 HOH TIP B . H 3 HOH 11 115 26 HOH TIP B . H 3 HOH 12 116 26 HOH TIP B . H 3 HOH 13 117 27 HOH TIP B . H 3 HOH 14 118 28 HOH TIP B . H 3 HOH 15 119 29 HOH TIP B . H 3 HOH 16 120 29 HOH TIP B . H 3 HOH 17 121 29 HOH TIP B . H 3 HOH 18 122 30 HOH TIP B . H 3 HOH 19 123 30 HOH TIP B . H 3 HOH 20 124 32 HOH TIP B . H 3 HOH 21 125 32 HOH TIP B . H 3 HOH 22 126 32 HOH TIP B . H 3 HOH 23 127 32 HOH TIP B . H 3 HOH 24 128 34 HOH TIP B . H 3 HOH 25 129 34 HOH TIP B . H 3 HOH 26 130 34 HOH TIP B . H 3 HOH 27 131 34 HOH TIP B . H 3 HOH 28 132 34 HOH TIP B . H 3 HOH 29 133 35 HOH TIP B . H 3 HOH 30 134 36 HOH TIP B . H 3 HOH 31 135 36 HOH TIP B . H 3 HOH 32 136 36 HOH TIP B . H 3 HOH 33 137 36 HOH TIP B . H 3 HOH 34 138 36 HOH TIP B . H 3 HOH 35 139 37 HOH TIP B . H 3 HOH 36 140 37 HOH TIP B . H 3 HOH 37 141 37 HOH TIP B . H 3 HOH 38 142 37 HOH TIP B . H 3 HOH 39 143 37 HOH TIP B . H 3 HOH 40 144 38 HOH TIP B . H 3 HOH 41 145 38 HOH TIP B . H 3 HOH 42 146 38 HOH TIP B . H 3 HOH 43 147 38 HOH TIP B . H 3 HOH 44 148 38 HOH TIP B . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal X-GEN 'data scaling' . ? 1 X-GEN 'data reduction' . ? 2 NUCLSQ refinement . ? 3 # _cell.entry_id 1QC1 _cell.length_a 53.700 _cell.length_b 53.700 _cell.length_c 45.000 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1QC1 _symmetry.space_group_name_H-M 'H 3' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting trigonal _symmetry.Int_Tables_number 146 # _exptl.entry_id 1QC1 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 36.82 _exptl_crystal.density_Matthews 1.95 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 289 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6 _exptl_crystal_grow.pdbx_details ;30 % MPD, 1MM DNA DUPLEX, 1 MM SPERMINE, 20 MM MAGNESIUM ACETATE, 50 MM CACODYLATE BUFFER, pH 6, VAPOR DIFFUSION, HANGING DROP, temperature 289K ; _exptl_crystal_grow.pdbx_pH_range . # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 MPD ? ? ? 1 2 1 SPERMINE ? ? ? 1 3 1 'MAGNESIUM ACETATE' ? ? ? 1 4 1 'CACODYLATE BUFFER' ? ? ? 1 5 2 MPD ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 258 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'AREA DETECTOR' _diffrn_detector.type SIEMENS _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type RIGAKU _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength 1.5418 _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 1QC1 _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 20.0 _reflns.d_resolution_high 2.4 _reflns.number_obs 1817 _reflns.number_all 1817 _reflns.percent_possible_obs ? _reflns.pdbx_Rmerge_I_obs 0.078 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _refine.entry_id 1QC1 _refine.ls_number_reflns_obs 1698 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 2 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 7.0 _refine.ls_d_res_high 2.5 _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs 0.147 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 404 _refine_hist.pdbx_number_atoms_ligand 4 _refine_hist.number_atoms_solvent 85 _refine_hist.number_atoms_total 493 _refine_hist.d_res_high 2.5 _refine_hist.d_res_low 7.0 # _database_PDB_matrix.entry_id 1QC1 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1QC1 _struct.title 'CRYSTAL STRUCTURE OF THE SELF-FITTED B-DNA DECAMER D(CCGCCGGCGG)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1QC1 _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'B-DNA DOUBLE-HELIX, DNA-DNA RECOGNITION, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 2 ? G N N 3 ? H N N 3 ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 1QC1 _struct_ref.pdbx_db_accession 1QC1 _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1QC1 A 1 ? 10 ? 1QC1 1 ? 10 ? 1 10 2 1 1QC1 B 1 ? 10 ? 1QC1 11 ? 20 ? 11 20 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.pdbx_parent_biol_id ? _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? C MG . MG ? ? ? 1_555 G HOH . O ? ? A MG 102 A HOH 125 6_455 ? ? ? ? ? ? ? 1.970 ? ? metalc2 metalc ? ? C MG . MG ? ? ? 1_555 G HOH . O ? ? A MG 102 A HOH 126 1_555 ? ? ? ? ? ? ? 1.986 ? ? metalc3 metalc ? ? C MG . MG ? ? ? 1_555 G HOH . O ? ? A MG 102 A HOH 127 1_555 ? ? ? ? ? ? ? 1.990 ? ? metalc4 metalc ? ? C MG . MG ? ? ? 1_555 G HOH . O ? ? A MG 102 A HOH 128 1_555 ? ? ? ? ? ? ? 1.985 ? ? metalc5 metalc ? ? C MG . MG ? ? ? 1_555 G HOH . O ? ? A MG 102 A HOH 129 1_555 ? ? ? ? ? ? ? 1.990 ? ? metalc6 metalc ? ? C MG . MG ? ? ? 1_555 G HOH . O ? ? A MG 102 A HOH 130 1_555 ? ? ? ? ? ? ? 2.019 ? ? metalc7 metalc ? ? G HOH . O ? ? ? 1_555 D MG . MG ? ? A HOH 116 B MG 101 1_555 ? ? ? ? ? ? ? 1.958 ? ? metalc8 metalc ? ? G HOH . O ? ? ? 1_555 D MG . MG ? ? A HOH 117 B MG 101 1_555 ? ? ? ? ? ? ? 1.951 ? ? metalc9 metalc ? ? G HOH . O ? ? ? 1_555 D MG . MG ? ? A HOH 118 B MG 101 1_555 ? ? ? ? ? ? ? 2.012 ? ? metalc10 metalc ? ? G HOH . O ? ? ? 2_555 E MG . MG ? ? A HOH 137 B MG 103 1_555 ? ? ? ? ? ? ? 2.779 ? ? metalc11 metalc ? ? G HOH . O ? ? ? 2_555 E MG . MG ? ? A HOH 142 B MG 103 1_555 ? ? ? ? ? ? ? 1.983 ? ? metalc12 metalc ? ? G HOH . O ? ? ? 1_555 F MG . MG ? ? A HOH 143 B MG 104 1_555 ? ? ? ? ? ? ? 2.005 ? ? metalc13 metalc ? ? D MG . MG ? ? ? 1_555 H HOH . O ? ? B MG 101 B HOH 119 1_555 ? ? ? ? ? ? ? 1.995 ? ? metalc14 metalc ? ? D MG . MG ? ? ? 1_555 H HOH . O ? ? B MG 101 B HOH 120 1_555 ? ? ? ? ? ? ? 1.973 ? ? metalc15 metalc ? ? D MG . MG ? ? ? 1_555 H HOH . O ? ? B MG 101 B HOH 121 1_555 ? ? ? ? ? ? ? 2.040 ? ? metalc16 metalc ? ? E MG . MG ? ? ? 1_555 H HOH . O ? ? B MG 103 B HOH 139 1_555 ? ? ? ? ? ? ? 1.970 ? ? metalc17 metalc ? ? E MG . MG ? ? ? 1_555 H HOH . O ? ? B MG 103 B HOH 140 1_555 ? ? ? ? ? ? ? 1.984 ? ? metalc18 metalc ? ? E MG . MG ? ? ? 1_555 H HOH . O ? ? B MG 103 B HOH 141 1_555 ? ? ? ? ? ? ? 1.967 ? ? metalc19 metalc ? ? E MG . MG ? ? ? 1_555 H HOH . O ? ? B MG 103 B HOH 142 1_555 ? ? ? ? ? ? ? 1.980 ? ? metalc20 metalc ? ? E MG . MG ? ? ? 1_555 H HOH . O ? ? B MG 103 B HOH 143 1_555 ? ? ? ? ? ? ? 1.990 ? ? metalc21 metalc ? ? F MG . MG ? ? ? 1_555 H HOH . O ? ? B MG 104 B HOH 144 1_555 ? ? ? ? ? ? ? 1.971 ? ? metalc22 metalc ? ? F MG . MG ? ? ? 1_555 H HOH . O ? ? B MG 104 B HOH 145 1_555 ? ? ? ? ? ? ? 1.993 ? ? metalc23 metalc ? ? F MG . MG ? ? ? 1_555 H HOH . O ? ? B MG 104 B HOH 146 6_455 ? ? ? ? ? ? ? 1.989 ? ? metalc24 metalc ? ? F MG . MG ? ? ? 1_555 H HOH . O ? ? B MG 104 B HOH 147 8_554 ? ? ? ? ? ? ? 2.022 ? ? metalc25 metalc ? ? F MG . MG ? ? ? 1_555 H HOH . O ? ? B MG 104 B HOH 148 1_555 ? ? ? ? ? ? ? 1.995 ? ? hydrog1 hydrog ? ? A DC 1 N3 ? ? ? 1_555 B DG 10 N1 ? ? A DC 1 B DG 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 B DG 10 O6 ? ? A DC 1 B DG 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 1 O2 ? ? ? 1_555 B DG 10 N2 ? ? A DC 1 B DG 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DC 2 N3 ? ? ? 1_555 B DG 9 N1 ? ? A DC 2 B DG 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DC 2 N4 ? ? ? 1_555 B DG 9 O6 ? ? A DC 2 B DG 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DC 2 O2 ? ? ? 1_555 B DG 9 N2 ? ? A DC 2 B DG 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DG 3 N1 ? ? ? 1_555 B DC 8 N3 ? ? A DG 3 B DC 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DG 3 N2 ? ? ? 1_555 B DC 8 O2 ? ? A DG 3 B DC 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DG 3 O6 ? ? ? 1_555 B DC 8 N4 ? ? A DG 3 B DC 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DC 4 N3 ? ? ? 1_555 B DG 7 N1 ? ? A DC 4 B DG 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DC 4 N4 ? ? ? 1_555 B DG 7 O6 ? ? A DC 4 B DG 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DC 4 O2 ? ? ? 1_555 B DG 7 N2 ? ? A DC 4 B DG 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DC 5 N3 ? ? ? 1_555 B DG 6 N1 ? ? A DC 5 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DC 5 N4 ? ? ? 1_555 B DG 6 O6 ? ? A DC 5 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DC 5 O2 ? ? ? 1_555 B DG 6 N2 ? ? A DC 5 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DG 6 N1 ? ? ? 1_555 B DC 5 N3 ? ? A DG 6 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DG 6 N2 ? ? ? 1_555 B DC 5 O2 ? ? A DG 6 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DG 6 O6 ? ? ? 1_555 B DC 5 N4 ? ? A DG 6 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DG 7 N1 ? ? ? 1_555 B DC 4 N3 ? ? A DG 7 B DC 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DG 7 N2 ? ? ? 1_555 B DC 4 O2 ? ? A DG 7 B DC 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DG 7 O6 ? ? ? 1_555 B DC 4 N4 ? ? A DG 7 B DC 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DC 8 N3 ? ? ? 1_555 B DG 3 N1 ? ? A DC 8 B DG 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DC 8 N4 ? ? ? 1_555 B DG 3 O6 ? ? A DC 8 B DG 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DC 8 O2 ? ? ? 1_555 B DG 3 N2 ? ? A DC 8 B DG 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DG 9 N1 ? ? ? 1_555 B DC 2 N3 ? ? A DG 9 B DC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DG 9 N2 ? ? ? 1_555 B DC 2 O2 ? ? A DG 9 B DC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A DG 9 O6 ? ? ? 1_555 B DC 2 N4 ? ? A DG 9 B DC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A DG 10 N1 ? ? ? 1_555 B DC 1 N3 ? ? A DG 10 B DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A DG 10 N2 ? ? ? 1_555 B DC 1 O2 ? ? A DG 10 B DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A DG 10 O6 ? ? ? 1_555 B DC 1 N4 ? ? A DG 10 B DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O ? G HOH . ? A HOH 125 ? 6_455 MG ? C MG . ? A MG 102 ? 1_555 O ? G HOH . ? A HOH 126 ? 1_555 88.8 ? 2 O ? G HOH . ? A HOH 125 ? 6_455 MG ? C MG . ? A MG 102 ? 1_555 O ? G HOH . ? A HOH 127 ? 1_555 90.6 ? 3 O ? G HOH . ? A HOH 126 ? 1_555 MG ? C MG . ? A MG 102 ? 1_555 O ? G HOH . ? A HOH 127 ? 1_555 90.0 ? 4 O ? G HOH . ? A HOH 125 ? 6_455 MG ? C MG . ? A MG 102 ? 1_555 O ? G HOH . ? A HOH 128 ? 1_555 91.2 ? 5 O ? G HOH . ? A HOH 126 ? 1_555 MG ? C MG . ? A MG 102 ? 1_555 O ? G HOH . ? A HOH 128 ? 1_555 180.0 ? 6 O ? G HOH . ? A HOH 127 ? 1_555 MG ? C MG . ? A MG 102 ? 1_555 O ? G HOH . ? A HOH 128 ? 1_555 90.0 ? 7 O ? G HOH . ? A HOH 125 ? 6_455 MG ? C MG . ? A MG 102 ? 1_555 O ? G HOH . ? A HOH 129 ? 1_555 89.4 ? 8 O ? G HOH . ? A HOH 126 ? 1_555 MG ? C MG . ? A MG 102 ? 1_555 O ? G HOH . ? A HOH 129 ? 1_555 90.0 ? 9 O ? G HOH . ? A HOH 127 ? 1_555 MG ? C MG . ? A MG 102 ? 1_555 O ? G HOH . ? A HOH 129 ? 1_555 180.0 ? 10 O ? G HOH . ? A HOH 128 ? 1_555 MG ? C MG . ? A MG 102 ? 1_555 O ? G HOH . ? A HOH 129 ? 1_555 90.0 ? 11 O ? G HOH . ? A HOH 125 ? 6_455 MG ? C MG . ? A MG 102 ? 1_555 O ? G HOH . ? A HOH 130 ? 1_555 178.6 ? 12 O ? G HOH . ? A HOH 126 ? 1_555 MG ? C MG . ? A MG 102 ? 1_555 O ? G HOH . ? A HOH 130 ? 1_555 90.0 ? 13 O ? G HOH . ? A HOH 127 ? 1_555 MG ? C MG . ? A MG 102 ? 1_555 O ? G HOH . ? A HOH 130 ? 1_555 90.2 ? 14 O ? G HOH . ? A HOH 128 ? 1_555 MG ? C MG . ? A MG 102 ? 1_555 O ? G HOH . ? A HOH 130 ? 1_555 90.0 ? 15 O ? G HOH . ? A HOH 129 ? 1_555 MG ? C MG . ? A MG 102 ? 1_555 O ? G HOH . ? A HOH 130 ? 1_555 89.8 ? 16 O ? G HOH . ? A HOH 116 ? 1_555 MG ? D MG . ? B MG 101 ? 1_555 O ? G HOH . ? A HOH 117 ? 1_555 90.9 ? 17 O ? G HOH . ? A HOH 116 ? 1_555 MG ? D MG . ? B MG 101 ? 1_555 O ? G HOH . ? A HOH 118 ? 1_555 89.1 ? 18 O ? G HOH . ? A HOH 117 ? 1_555 MG ? D MG . ? B MG 101 ? 1_555 O ? G HOH . ? A HOH 118 ? 1_555 90.8 ? 19 O ? G HOH . ? A HOH 116 ? 1_555 MG ? D MG . ? B MG 101 ? 1_555 O ? H HOH . ? B HOH 119 ? 1_555 91.5 ? 20 O ? G HOH . ? A HOH 117 ? 1_555 MG ? D MG . ? B MG 101 ? 1_555 O ? H HOH . ? B HOH 119 ? 1_555 91.7 ? 21 O ? G HOH . ? A HOH 118 ? 1_555 MG ? D MG . ? B MG 101 ? 1_555 O ? H HOH . ? B HOH 119 ? 1_555 177.4 ? 22 O ? G HOH . ? A HOH 116 ? 1_555 MG ? D MG . ? B MG 101 ? 1_555 O ? H HOH . ? B HOH 120 ? 1_555 176.9 ? 23 O ? G HOH . ? A HOH 117 ? 1_555 MG ? D MG . ? B MG 101 ? 1_555 O ? H HOH . ? B HOH 120 ? 1_555 91.4 ? 24 O ? G HOH . ? A HOH 118 ? 1_555 MG ? D MG . ? B MG 101 ? 1_555 O ? H HOH . ? B HOH 120 ? 1_555 88.8 ? 25 O ? H HOH . ? B HOH 119 ? 1_555 MG ? D MG . ? B MG 101 ? 1_555 O ? H HOH . ? B HOH 120 ? 1_555 90.5 ? 26 O ? G HOH . ? A HOH 116 ? 1_555 MG ? D MG . ? B MG 101 ? 1_555 O ? H HOH . ? B HOH 121 ? 1_555 89.7 ? 27 O ? G HOH . ? A HOH 117 ? 1_555 MG ? D MG . ? B MG 101 ? 1_555 O ? H HOH . ? B HOH 121 ? 1_555 179.2 ? 28 O ? G HOH . ? A HOH 118 ? 1_555 MG ? D MG . ? B MG 101 ? 1_555 O ? H HOH . ? B HOH 121 ? 1_555 88.7 ? 29 O ? H HOH . ? B HOH 119 ? 1_555 MG ? D MG . ? B MG 101 ? 1_555 O ? H HOH . ? B HOH 121 ? 1_555 88.8 ? 30 O ? H HOH . ? B HOH 120 ? 1_555 MG ? D MG . ? B MG 101 ? 1_555 O ? H HOH . ? B HOH 121 ? 1_555 88.0 ? 31 O ? G HOH . ? A HOH 137 ? 2_555 MG ? E MG . ? B MG 103 ? 1_555 O ? G HOH . ? A HOH 142 ? 2_555 82.9 ? 32 O ? G HOH . ? A HOH 137 ? 2_555 MG ? E MG . ? B MG 103 ? 1_555 O ? H HOH . ? B HOH 139 ? 1_555 46.5 ? 33 O ? G HOH . ? A HOH 142 ? 2_555 MG ? E MG . ? B MG 103 ? 1_555 O ? H HOH . ? B HOH 139 ? 1_555 91.1 ? 34 O ? G HOH . ? A HOH 137 ? 2_555 MG ? E MG . ? B MG 103 ? 1_555 O ? H HOH . ? B HOH 140 ? 1_555 135.9 ? 35 O ? G HOH . ? A HOH 142 ? 2_555 MG ? E MG . ? B MG 103 ? 1_555 O ? H HOH . ? B HOH 140 ? 1_555 89.0 ? 36 O ? H HOH . ? B HOH 139 ? 1_555 MG ? E MG . ? B MG 103 ? 1_555 O ? H HOH . ? B HOH 140 ? 1_555 90.6 ? 37 O ? G HOH . ? A HOH 137 ? 2_555 MG ? E MG . ? B MG 103 ? 1_555 O ? H HOH . ? B HOH 141 ? 1_555 98.7 ? 38 O ? G HOH . ? A HOH 142 ? 2_555 MG ? E MG . ? B MG 103 ? 1_555 O ? H HOH . ? B HOH 141 ? 1_555 178.0 ? 39 O ? H HOH . ? B HOH 139 ? 1_555 MG ? E MG . ? B MG 103 ? 1_555 O ? H HOH . ? B HOH 141 ? 1_555 90.9 ? 40 O ? H HOH . ? B HOH 140 ? 1_555 MG ? E MG . ? B MG 103 ? 1_555 O ? H HOH . ? B HOH 141 ? 1_555 90.6 ? 41 O ? G HOH . ? A HOH 137 ? 2_555 MG ? E MG . ? B MG 103 ? 1_555 O ? H HOH . ? B HOH 142 ? 1_555 44.8 ? 42 O ? G HOH . ? A HOH 142 ? 2_555 MG ? E MG . ? B MG 103 ? 1_555 O ? H HOH . ? B HOH 142 ? 1_555 88.6 ? 43 O ? H HOH . ? B HOH 139 ? 1_555 MG ? E MG . ? B MG 103 ? 1_555 O ? H HOH . ? B HOH 142 ? 1_555 90.5 ? 44 O ? H HOH . ? B HOH 140 ? 1_555 MG ? E MG . ? B MG 103 ? 1_555 O ? H HOH . ? B HOH 142 ? 1_555 177.4 ? 45 O ? H HOH . ? B HOH 141 ? 1_555 MG ? E MG . ? B MG 103 ? 1_555 O ? H HOH . ? B HOH 142 ? 1_555 91.7 ? 46 O ? G HOH . ? A HOH 137 ? 2_555 MG ? E MG . ? B MG 103 ? 1_555 O ? H HOH . ? B HOH 143 ? 1_555 133.3 ? 47 O ? G HOH . ? A HOH 142 ? 2_555 MG ? E MG . ? B MG 103 ? 1_555 O ? H HOH . ? B HOH 143 ? 1_555 87.8 ? 48 O ? H HOH . ? B HOH 139 ? 1_555 MG ? E MG . ? B MG 103 ? 1_555 O ? H HOH . ? B HOH 143 ? 1_555 178.8 ? 49 O ? H HOH . ? B HOH 140 ? 1_555 MG ? E MG . ? B MG 103 ? 1_555 O ? H HOH . ? B HOH 143 ? 1_555 89.3 ? 50 O ? H HOH . ? B HOH 141 ? 1_555 MG ? E MG . ? B MG 103 ? 1_555 O ? H HOH . ? B HOH 143 ? 1_555 90.3 ? 51 O ? H HOH . ? B HOH 142 ? 1_555 MG ? E MG . ? B MG 103 ? 1_555 O ? H HOH . ? B HOH 143 ? 1_555 89.5 ? 52 O ? G HOH . ? A HOH 143 ? 1_555 MG ? F MG . ? B MG 104 ? 1_555 O ? H HOH . ? B HOH 144 ? 1_555 89.2 ? 53 O ? G HOH . ? A HOH 143 ? 1_555 MG ? F MG . ? B MG 104 ? 1_555 O ? H HOH . ? B HOH 145 ? 1_555 91.1 ? 54 O ? H HOH . ? B HOH 144 ? 1_555 MG ? F MG . ? B MG 104 ? 1_555 O ? H HOH . ? B HOH 145 ? 1_555 92.4 ? 55 O ? G HOH . ? A HOH 143 ? 1_555 MG ? F MG . ? B MG 104 ? 1_555 O ? H HOH . ? B HOH 146 ? 6_455 90.4 ? 56 O ? H HOH . ? B HOH 144 ? 1_555 MG ? F MG . ? B MG 104 ? 1_555 O ? H HOH . ? B HOH 146 ? 6_455 178.1 ? 57 O ? H HOH . ? B HOH 145 ? 1_555 MG ? F MG . ? B MG 104 ? 1_555 O ? H HOH . ? B HOH 146 ? 6_455 89.5 ? 58 O ? G HOH . ? A HOH 143 ? 1_555 MG ? F MG . ? B MG 104 ? 1_555 O ? H HOH . ? B HOH 147 ? 8_554 88.4 ? 59 O ? H HOH . ? B HOH 144 ? 1_555 MG ? F MG . ? B MG 104 ? 1_555 O ? H HOH . ? B HOH 147 ? 8_554 88.8 ? 60 O ? H HOH . ? B HOH 145 ? 1_555 MG ? F MG . ? B MG 104 ? 1_555 O ? H HOH . ? B HOH 147 ? 8_554 178.7 ? 61 O ? H HOH . ? B HOH 146 ? 6_455 MG ? F MG . ? B MG 104 ? 1_555 O ? H HOH . ? B HOH 147 ? 8_554 89.3 ? 62 O ? G HOH . ? A HOH 143 ? 1_555 MG ? F MG . ? B MG 104 ? 1_555 O ? H HOH . ? B HOH 148 ? 1_555 178.0 ? 63 O ? H HOH . ? B HOH 144 ? 1_555 MG ? F MG . ? B MG 104 ? 1_555 O ? H HOH . ? B HOH 148 ? 1_555 91.3 ? 64 O ? H HOH . ? B HOH 145 ? 1_555 MG ? F MG . ? B MG 104 ? 1_555 O ? H HOH . ? B HOH 148 ? 1_555 90.8 ? 65 O ? H HOH . ? B HOH 146 ? 6_455 MG ? F MG . ? B MG 104 ? 1_555 O ? H HOH . ? B HOH 148 ? 1_555 89.0 ? 66 O ? H HOH . ? B HOH 147 ? 8_554 MG ? F MG . ? B MG 104 ? 1_555 O ? H HOH . ? B HOH 148 ? 1_555 89.7 ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software B MG 101 ? 6 'BINDING SITE FOR RESIDUE MG B 101' AC2 Software A MG 102 ? 6 'BINDING SITE FOR RESIDUE MG A 102' AC3 Software B MG 103 ? 7 'BINDING SITE FOR RESIDUE MG B 103' AC4 Software B MG 104 ? 7 'BINDING SITE FOR RESIDUE MG B 104' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 HOH G . ? HOH A 116 . ? 1_555 ? 2 AC1 6 HOH G . ? HOH A 117 . ? 1_555 ? 3 AC1 6 HOH G . ? HOH A 118 . ? 1_555 ? 4 AC1 6 HOH H . ? HOH B 119 . ? 1_555 ? 5 AC1 6 HOH H . ? HOH B 120 . ? 1_555 ? 6 AC1 6 HOH H . ? HOH B 121 . ? 1_555 ? 7 AC2 6 HOH G . ? HOH A 125 . ? 6_455 ? 8 AC2 6 HOH G . ? HOH A 126 . ? 1_555 ? 9 AC2 6 HOH G . ? HOH A 127 . ? 1_555 ? 10 AC2 6 HOH G . ? HOH A 128 . ? 1_555 ? 11 AC2 6 HOH G . ? HOH A 129 . ? 1_555 ? 12 AC2 6 HOH G . ? HOH A 130 . ? 1_555 ? 13 AC3 7 HOH G . ? HOH A 137 . ? 2_555 ? 14 AC3 7 HOH G . ? HOH A 142 . ? 2_555 ? 15 AC3 7 HOH H . ? HOH B 139 . ? 1_555 ? 16 AC3 7 HOH H . ? HOH B 140 . ? 1_555 ? 17 AC3 7 HOH H . ? HOH B 141 . ? 1_555 ? 18 AC3 7 HOH H . ? HOH B 142 . ? 1_555 ? 19 AC3 7 HOH H . ? HOH B 143 . ? 1_555 ? 20 AC4 7 HOH G . ? HOH A 143 . ? 1_555 ? 21 AC4 7 DC B 4 ? DC B 14 . ? 6_455 ? 22 AC4 7 HOH H . ? HOH B 144 . ? 1_555 ? 23 AC4 7 HOH H . ? HOH B 145 . ? 1_555 ? 24 AC4 7 HOH H . ? HOH B 146 . ? 6_455 ? 25 AC4 7 HOH H . ? HOH B 147 . ? 8_554 ? 26 AC4 7 HOH H . ? HOH B 148 . ? 1_555 ? # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 N3 A DC 2 ? ? C4 A DC 2 ? ? 1.380 1.335 0.045 0.007 N 2 1 P A DC 4 ? ? "O5'" A DC 4 ? ? 1.695 1.593 0.102 0.010 N 3 1 P A DG 6 ? ? "O5'" A DG 6 ? ? 1.654 1.593 0.061 0.010 N 4 1 "O3'" A DG 6 ? ? P A DG 7 ? ? 1.709 1.607 0.102 0.012 Y 5 1 C5 A DG 7 ? ? N7 A DG 7 ? ? 1.424 1.388 0.036 0.006 N 6 1 P A DC 8 ? ? "O5'" A DC 8 ? ? 1.656 1.593 0.063 0.010 N 7 1 C6 A DG 10 ? ? N1 A DG 10 ? ? 1.340 1.391 -0.051 0.007 N 8 1 C4 B DC 11 ? ? C5 B DC 11 ? ? 1.376 1.425 -0.049 0.008 N 9 1 P B DC 12 ? ? "O5'" B DC 12 ? ? 1.677 1.593 0.084 0.010 N 10 1 "C5'" B DC 12 ? ? "C4'" B DC 12 ? ? 1.582 1.512 0.070 0.007 N 11 1 C2 B DC 12 ? ? N3 B DC 12 ? ? 1.425 1.353 0.072 0.008 N 12 1 "O3'" B DC 12 ? ? P B DG 13 ? ? 1.535 1.607 -0.072 0.012 Y 13 1 N1 B DC 14 ? ? C6 B DC 14 ? ? 1.316 1.367 -0.051 0.006 N 14 1 N3 B DC 14 ? ? C4 B DC 14 ? ? 1.380 1.335 0.045 0.007 N 15 1 P B DC 15 ? ? "O5'" B DC 15 ? ? 1.653 1.593 0.060 0.010 N 16 1 C2 B DC 15 ? ? N3 B DC 15 ? ? 1.415 1.353 0.062 0.008 N 17 1 "O3'" B DC 18 ? ? P B DG 19 ? ? 1.687 1.607 0.080 0.012 Y 18 1 "C5'" B DG 19 ? ? "C4'" B DG 19 ? ? 1.557 1.512 0.045 0.007 N 19 1 C5 B DG 20 ? ? N7 B DG 20 ? ? 1.429 1.388 0.041 0.006 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A DC 1 ? ? "C4'" A DC 1 ? ? "C3'" A DC 1 ? ? 101.42 104.50 -3.08 0.40 N 2 1 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 115.98 108.30 7.68 0.30 N 3 1 N3 A DC 1 ? ? C4 A DC 1 ? ? N4 A DC 1 ? ? 122.79 118.00 4.79 0.70 N 4 1 "O3'" A DC 1 ? ? P A DC 2 ? ? OP2 A DC 2 ? ? 117.11 110.50 6.61 1.10 Y 5 1 "O5'" A DC 2 ? ? "C5'" A DC 2 ? ? "C4'" A DC 2 ? ? 104.42 109.40 -4.98 0.80 N 6 1 "O4'" A DC 2 ? ? "C4'" A DC 2 ? ? "C3'" A DC 2 ? ? 101.35 104.50 -3.15 0.40 N 7 1 C2 A DC 2 ? ? N3 A DC 2 ? ? C4 A DC 2 ? ? 123.38 119.90 3.48 0.50 N 8 1 N3 A DC 2 ? ? C4 A DC 2 ? ? C5 A DC 2 ? ? 115.94 121.90 -5.96 0.40 N 9 1 N1 A DC 2 ? ? C2 A DC 2 ? ? O2 A DC 2 ? ? 124.49 118.90 5.59 0.60 N 10 1 "C3'" A DC 2 ? ? "O3'" A DC 2 ? ? P A DG 3 ? ? 130.11 119.70 10.41 1.20 Y 11 1 "C3'" A DG 3 ? ? "C2'" A DG 3 ? ? "C1'" A DG 3 ? ? 97.22 102.40 -5.18 0.80 N 12 1 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? N9 A DG 3 ? ? 110.74 108.30 2.44 0.30 N 13 1 N1 A DG 3 ? ? C2 A DG 3 ? ? N3 A DG 3 ? ? 127.86 123.90 3.96 0.60 N 14 1 C2 A DG 3 ? ? N3 A DG 3 ? ? C4 A DG 3 ? ? 108.48 111.90 -3.42 0.50 N 15 1 C5 A DG 3 ? ? C6 A DG 3 ? ? N1 A DG 3 ? ? 114.63 111.50 3.13 0.50 N 16 1 "C3'" A DG 3 ? ? "O3'" A DG 3 ? ? P A DC 4 ? ? 131.94 119.70 12.24 1.20 Y 17 1 "O5'" A DC 5 ? ? "C5'" A DC 5 ? ? "C4'" A DC 5 ? ? 102.78 109.40 -6.62 0.80 N 18 1 "O4'" A DC 5 ? ? "C4'" A DC 5 ? ? "C3'" A DC 5 ? ? 101.85 104.50 -2.65 0.40 N 19 1 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 113.66 108.30 5.36 0.30 N 20 1 N3 A DC 5 ? ? C4 A DC 5 ? ? C5 A DC 5 ? ? 119.29 121.90 -2.61 0.40 N 21 1 "C3'" A DC 5 ? ? "O3'" A DC 5 ? ? P A DG 6 ? ? 135.66 119.70 15.96 1.20 Y 22 1 P A DG 6 ? ? "O5'" A DG 6 ? ? "C5'" A DG 6 ? ? 109.87 120.90 -11.03 1.60 N 23 1 "O4'" A DG 6 ? ? "C1'" A DG 6 ? ? N9 A DG 6 ? ? 114.14 108.30 5.84 0.30 N 24 1 N3 A DG 6 ? ? C4 A DG 6 ? ? C5 A DG 6 ? ? 125.49 128.60 -3.11 0.50 N 25 1 N9 A DG 7 ? ? C4 A DG 7 ? ? C5 A DG 7 ? ? 108.01 105.40 2.61 0.40 N 26 1 "C4'" A DC 8 ? ? "C3'" A DC 8 ? ? "C2'" A DC 8 ? ? 96.39 102.20 -5.81 0.70 N 27 1 "C3'" A DC 8 ? ? "C2'" A DC 8 ? ? "C1'" A DC 8 ? ? 94.91 102.40 -7.49 0.80 N 28 1 "O4'" A DC 8 ? ? "C1'" A DC 8 ? ? N1 A DC 8 ? ? 114.69 108.30 6.39 0.30 N 29 1 "O4'" A DG 9 ? ? "C4'" A DG 9 ? ? "C3'" A DG 9 ? ? 101.83 104.50 -2.67 0.40 N 30 1 "O4'" A DG 9 ? ? "C1'" A DG 9 ? ? N9 A DG 9 ? ? 110.59 108.30 2.29 0.30 N 31 1 C5 A DG 9 ? ? C6 A DG 9 ? ? N1 A DG 9 ? ? 115.02 111.50 3.52 0.50 N 32 1 "C3'" A DG 9 ? ? "O3'" A DG 9 ? ? P A DG 10 ? ? 128.98 119.70 9.28 1.20 Y 33 1 "O4'" A DG 10 ? ? "C4'" A DG 10 ? ? "C3'" A DG 10 ? ? 100.24 104.50 -4.26 0.40 N 34 1 "C4'" A DG 10 ? ? "C3'" A DG 10 ? ? "C2'" A DG 10 ? ? 95.60 102.20 -6.60 0.70 N 35 1 "C3'" A DG 10 ? ? "C2'" A DG 10 ? ? "C1'" A DG 10 ? ? 95.33 102.40 -7.07 0.80 N 36 1 C5 A DG 10 ? ? C6 A DG 10 ? ? N1 A DG 10 ? ? 115.00 111.50 3.50 0.50 N 37 1 C8 A DG 10 ? ? N9 A DG 10 ? ? C4 A DG 10 ? ? 109.40 106.40 3.00 0.40 N 38 1 C5 A DG 10 ? ? C6 A DG 10 ? ? O6 A DG 10 ? ? 124.62 128.60 -3.98 0.60 N 39 1 "O5'" B DC 11 ? ? "C5'" B DC 11 ? ? "C4'" B DC 11 ? ? 104.28 109.40 -5.12 0.80 N 40 1 "O4'" B DC 11 ? ? "C1'" B DC 11 ? ? N1 B DC 11 ? ? 114.52 108.30 6.22 0.30 N 41 1 "O5'" B DC 12 ? ? "C5'" B DC 12 ? ? "C4'" B DC 12 ? ? 99.27 109.40 -10.13 0.80 N 42 1 "O4'" B DC 12 ? ? "C1'" B DC 12 ? ? N1 B DC 12 ? ? 113.01 108.30 4.71 0.30 N 43 1 N1 B DC 12 ? ? C2 B DC 12 ? ? O2 B DC 12 ? ? 124.07 118.90 5.17 0.60 N 44 1 "C3'" B DC 12 ? ? "O3'" B DC 12 ? ? P B DG 13 ? ? 137.54 119.70 17.84 1.20 Y 45 1 "O4'" B DG 13 ? ? "C4'" B DG 13 ? ? "C3'" B DG 13 ? ? 100.35 104.50 -4.15 0.40 N 46 1 "O4'" B DG 13 ? ? "C1'" B DG 13 ? ? "C2'" B DG 13 ? ? 99.58 105.90 -6.32 0.80 N 47 1 N9 B DG 13 ? ? "C1'" B DG 13 ? ? "C2'" B DG 13 ? ? 123.30 114.30 9.00 1.40 N 48 1 C6 B DG 13 ? ? N1 B DG 13 ? ? C2 B DG 13 ? ? 120.25 125.10 -4.85 0.60 N 49 1 C5 B DG 13 ? ? C6 B DG 13 ? ? N1 B DG 13 ? ? 115.05 111.50 3.55 0.50 N 50 1 C8 B DG 13 ? ? N9 B DG 13 ? ? C4 B DG 13 ? ? 102.17 106.40 -4.23 0.40 N 51 1 N9 B DG 13 ? ? C4 B DG 13 ? ? C5 B DG 13 ? ? 108.12 105.40 2.72 0.40 N 52 1 C5 B DG 13 ? ? C6 B DG 13 ? ? O6 B DG 13 ? ? 124.64 128.60 -3.96 0.60 N 53 1 "O5'" B DC 14 ? ? P B DC 14 ? ? OP1 B DC 14 ? ? 118.40 110.70 7.70 1.20 N 54 1 "C4'" B DC 14 ? ? "C3'" B DC 14 ? ? "C2'" B DC 14 ? ? 110.08 103.10 6.98 0.90 N 55 1 C2 B DC 14 ? ? N3 B DC 14 ? ? C4 B DC 14 ? ? 122.94 119.90 3.04 0.50 N 56 1 N3 B DC 14 ? ? C4 B DC 14 ? ? C5 B DC 14 ? ? 118.86 121.90 -3.04 0.40 N 57 1 P B DC 15 ? ? "O5'" B DC 15 ? ? "C5'" B DC 15 ? ? 109.69 120.90 -11.21 1.60 N 58 1 "O4'" B DC 15 ? ? "C1'" B DC 15 ? ? "C2'" B DC 15 ? ? 100.26 105.90 -5.64 0.80 N 59 1 "O4'" B DC 15 ? ? "C1'" B DC 15 ? ? N1 B DC 15 ? ? 110.87 108.30 2.57 0.30 N 60 1 C4 B DC 15 ? ? C5 B DC 15 ? ? C6 B DC 15 ? ? 114.35 117.40 -3.05 0.50 N 61 1 C5 B DC 15 ? ? C6 B DC 15 ? ? N1 B DC 15 ? ? 124.97 121.00 3.97 0.50 N 62 1 N1 B DC 15 ? ? C2 B DC 15 ? ? O2 B DC 15 ? ? 124.65 118.90 5.75 0.60 N 63 1 "C3'" B DC 15 ? ? "O3'" B DC 15 ? ? P B DG 16 ? ? 127.55 119.70 7.85 1.20 Y 64 1 "O4'" B DG 16 ? ? "C1'" B DG 16 ? ? "C2'" B DG 16 ? ? 98.15 105.90 -7.75 0.80 N 65 1 C6 B DG 16 ? ? N1 B DG 16 ? ? C2 B DG 16 ? ? 120.83 125.10 -4.27 0.60 N 66 1 N1 B DG 16 ? ? C2 B DG 16 ? ? N3 B DG 16 ? ? 127.85 123.90 3.95 0.60 N 67 1 C8 B DG 16 ? ? N9 B DG 16 ? ? C4 B DG 16 ? ? 103.27 106.40 -3.13 0.40 N 68 1 N9 B DG 16 ? ? C4 B DG 16 ? ? C5 B DG 16 ? ? 108.00 105.40 2.60 0.40 N 69 1 P B DG 17 ? ? "O5'" B DG 17 ? ? "C5'" B DG 17 ? ? 110.09 120.90 -10.81 1.60 N 70 1 "O4'" B DG 17 ? ? "C1'" B DG 17 ? ? N9 B DG 17 ? ? 111.78 108.30 3.48 0.30 N 71 1 C6 B DG 17 ? ? N1 B DG 17 ? ? C2 B DG 17 ? ? 121.43 125.10 -3.67 0.60 N 72 1 C2 B DG 17 ? ? N3 B DG 17 ? ? C4 B DG 17 ? ? 116.16 111.90 4.26 0.50 N 73 1 N3 B DG 17 ? ? C4 B DG 17 ? ? C5 B DG 17 ? ? 124.92 128.60 -3.68 0.50 N 74 1 C4 B DG 17 ? ? C5 B DG 17 ? ? N7 B DG 17 ? ? 108.27 110.80 -2.53 0.40 N 75 1 N1 B DG 17 ? ? C6 B DG 17 ? ? O6 B DG 17 ? ? 112.63 119.90 -7.27 0.60 N 76 1 C5 B DG 17 ? ? C6 B DG 17 ? ? O6 B DG 17 ? ? 134.56 128.60 5.96 0.60 N 77 1 "O5'" B DC 18 ? ? P B DC 18 ? ? OP2 B DC 18 ? ? 118.07 110.70 7.37 1.20 N 78 1 "C5'" B DC 18 ? ? "C4'" B DC 18 ? ? "C3'" B DC 18 ? ? 123.78 115.70 8.08 1.20 N 79 1 N3 B DC 18 ? ? C4 B DC 18 ? ? C5 B DC 18 ? ? 119.24 121.90 -2.66 0.40 N 80 1 N3 B DC 18 ? ? C4 B DC 18 ? ? N4 B DC 18 ? ? 122.70 118.00 4.70 0.70 N 81 1 "O5'" B DG 19 ? ? P B DG 19 ? ? OP2 B DG 19 ? ? 118.44 110.70 7.74 1.20 N 82 1 "O4'" B DG 19 ? ? "C1'" B DG 19 ? ? N9 B DG 19 ? ? 111.66 108.30 3.36 0.30 N 83 1 C4 B DG 19 ? ? C5 B DG 19 ? ? N7 B DG 19 ? ? 113.58 110.80 2.78 0.40 N 84 1 C8 B DG 19 ? ? N9 B DG 19 ? ? C4 B DG 19 ? ? 103.92 106.40 -2.48 0.40 N 85 1 "C3'" B DG 19 ? ? "O3'" B DG 19 ? ? P B DG 20 ? ? 132.58 119.70 12.88 1.20 Y 86 1 OP1 B DG 20 ? ? P B DG 20 ? ? OP2 B DG 20 ? ? 107.02 119.60 -12.58 1.50 N 87 1 "C3'" B DG 20 ? ? "C2'" B DG 20 ? ? "C1'" B DG 20 ? ? 96.83 102.40 -5.57 0.80 N 88 1 "O4'" B DG 20 ? ? "C1'" B DG 20 ? ? N9 B DG 20 ? ? 112.06 108.30 3.76 0.30 N # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 131 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id G _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal DC OP3 O N N 1 DC P P N N 2 DC OP1 O N N 3 DC OP2 O N N 4 DC "O5'" O N N 5 DC "C5'" C N N 6 DC "C4'" C N R 7 DC "O4'" O N N 8 DC "C3'" C N S 9 DC "O3'" O N N 10 DC "C2'" C N N 11 DC "C1'" C N R 12 DC N1 N N N 13 DC C2 C N N 14 DC O2 O N N 15 DC N3 N N N 16 DC C4 C N N 17 DC N4 N N N 18 DC C5 C N N 19 DC C6 C N N 20 DC HOP3 H N N 21 DC HOP2 H N N 22 DC "H5'" H N N 23 DC "H5''" H N N 24 DC "H4'" H N N 25 DC "H3'" H N N 26 DC "HO3'" H N N 27 DC "H2'" H N N 28 DC "H2''" H N N 29 DC "H1'" H N N 30 DC H41 H N N 31 DC H42 H N N 32 DC H5 H N N 33 DC H6 H N N 34 DG OP3 O N N 35 DG P P N N 36 DG OP1 O N N 37 DG OP2 O N N 38 DG "O5'" O N N 39 DG "C5'" C N N 40 DG "C4'" C N R 41 DG "O4'" O N N 42 DG "C3'" C N S 43 DG "O3'" O N N 44 DG "C2'" C N N 45 DG "C1'" C N R 46 DG N9 N Y N 47 DG C8 C Y N 48 DG N7 N Y N 49 DG C5 C Y N 50 DG C6 C N N 51 DG O6 O N N 52 DG N1 N N N 53 DG C2 C N N 54 DG N2 N N N 55 DG N3 N N N 56 DG C4 C Y N 57 DG HOP3 H N N 58 DG HOP2 H N N 59 DG "H5'" H N N 60 DG "H5''" H N N 61 DG "H4'" H N N 62 DG "H3'" H N N 63 DG "HO3'" H N N 64 DG "H2'" H N N 65 DG "H2''" H N N 66 DG "H1'" H N N 67 DG H8 H N N 68 DG H1 H N N 69 DG H21 H N N 70 DG H22 H N N 71 HOH O O N N 72 HOH H1 H N N 73 HOH H2 H N N 74 MG MG MG N N 75 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DC OP3 P sing N N 1 DC OP3 HOP3 sing N N 2 DC P OP1 doub N N 3 DC P OP2 sing N N 4 DC P "O5'" sing N N 5 DC OP2 HOP2 sing N N 6 DC "O5'" "C5'" sing N N 7 DC "C5'" "C4'" sing N N 8 DC "C5'" "H5'" sing N N 9 DC "C5'" "H5''" sing N N 10 DC "C4'" "O4'" sing N N 11 DC "C4'" "C3'" sing N N 12 DC "C4'" "H4'" sing N N 13 DC "O4'" "C1'" sing N N 14 DC "C3'" "O3'" sing N N 15 DC "C3'" "C2'" sing N N 16 DC "C3'" "H3'" sing N N 17 DC "O3'" "HO3'" sing N N 18 DC "C2'" "C1'" sing N N 19 DC "C2'" "H2'" sing N N 20 DC "C2'" "H2''" sing N N 21 DC "C1'" N1 sing N N 22 DC "C1'" "H1'" sing N N 23 DC N1 C2 sing N N 24 DC N1 C6 sing N N 25 DC C2 O2 doub N N 26 DC C2 N3 sing N N 27 DC N3 C4 doub N N 28 DC C4 N4 sing N N 29 DC C4 C5 sing N N 30 DC N4 H41 sing N N 31 DC N4 H42 sing N N 32 DC C5 C6 doub N N 33 DC C5 H5 sing N N 34 DC C6 H6 sing N N 35 DG OP3 P sing N N 36 DG OP3 HOP3 sing N N 37 DG P OP1 doub N N 38 DG P OP2 sing N N 39 DG P "O5'" sing N N 40 DG OP2 HOP2 sing N N 41 DG "O5'" "C5'" sing N N 42 DG "C5'" "C4'" sing N N 43 DG "C5'" "H5'" sing N N 44 DG "C5'" "H5''" sing N N 45 DG "C4'" "O4'" sing N N 46 DG "C4'" "C3'" sing N N 47 DG "C4'" "H4'" sing N N 48 DG "O4'" "C1'" sing N N 49 DG "C3'" "O3'" sing N N 50 DG "C3'" "C2'" sing N N 51 DG "C3'" "H3'" sing N N 52 DG "O3'" "HO3'" sing N N 53 DG "C2'" "C1'" sing N N 54 DG "C2'" "H2'" sing N N 55 DG "C2'" "H2''" sing N N 56 DG "C1'" N9 sing N N 57 DG "C1'" "H1'" sing N N 58 DG N9 C8 sing Y N 59 DG N9 C4 sing Y N 60 DG C8 N7 doub Y N 61 DG C8 H8 sing N N 62 DG N7 C5 sing Y N 63 DG C5 C6 sing N N 64 DG C5 C4 doub Y N 65 DG C6 O6 doub N N 66 DG C6 N1 sing N N 67 DG N1 C2 sing N N 68 DG N1 H1 sing N N 69 DG C2 N2 sing N N 70 DG C2 N3 doub N N 71 DG N2 H21 sing N N 72 DG N2 H22 sing N N 73 DG N3 C4 sing N N 74 HOH O H1 sing N N 75 HOH O H2 sing N N 76 # _ndb_struct_conf_na.entry_id 1QC1 _ndb_struct_conf_na.feature 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 1 1_555 B DG 10 1_555 0.535 -0.120 0.128 -7.507 -8.062 3.584 1 A_DC1:DG20_B A 1 ? B 20 ? 19 1 1 A DC 2 1_555 B DG 9 1_555 -0.576 -0.609 0.251 6.753 -9.116 -5.134 2 A_DC2:DG19_B A 2 ? B 19 ? 19 1 1 A DG 3 1_555 B DC 8 1_555 0.438 -0.552 0.434 11.752 -15.573 -2.505 3 A_DG3:DC18_B A 3 ? B 18 ? 19 1 1 A DC 4 1_555 B DG 7 1_555 0.026 -0.395 0.554 -2.754 -31.189 -4.095 4 A_DC4:DG17_B A 4 ? B 17 ? 19 1 1 A DC 5 1_555 B DG 6 1_555 -0.171 -0.668 0.484 -5.746 -9.208 -2.149 5 A_DC5:DG16_B A 5 ? B 16 ? 19 1 1 A DG 6 1_555 B DC 5 1_555 0.699 -0.418 0.596 0.852 -11.798 -3.605 6 A_DG6:DC15_B A 6 ? B 15 ? 19 1 1 A DG 7 1_555 B DC 4 1_555 -0.133 -0.334 0.835 0.606 -25.389 -2.297 7 A_DG7:DC14_B A 7 ? B 14 ? 19 1 1 A DC 8 1_555 B DG 3 1_555 0.312 -0.178 0.206 2.402 -14.666 -3.903 8 A_DC8:DG13_B A 8 ? B 13 ? 19 1 1 A DG 9 1_555 B DC 2 1_555 -0.526 -0.210 0.361 -1.793 -28.630 2.024 9 A_DG9:DC12_B A 9 ? B 12 ? 19 1 1 A DG 10 1_555 B DC 1 1_555 -0.312 -0.249 0.271 6.124 -15.519 8.441 10 A_DG10:DC11_B A 10 ? B 11 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 1 1_555 B DG 10 1_555 A DC 2 1_555 B DG 9 1_555 -0.138 0.576 2.973 1.301 1.629 34.413 0.742 0.417 2.989 2.750 -2.196 34.475 1 AA_DC1DC2:DG19DG20_BB A 1 ? B 20 ? A 2 ? B 19 ? 1 A DC 2 1_555 B DG 9 1_555 A DG 3 1_555 B DC 8 1_555 -0.317 0.880 3.380 -2.345 7.234 33.139 0.272 0.142 3.502 12.479 4.045 33.976 2 AA_DC2DG3:DC18DG19_BB A 2 ? B 19 ? A 3 ? B 18 ? 1 A DG 3 1_555 B DC 8 1_555 A DC 4 1_555 B DG 7 1_555 -0.716 0.366 3.731 -0.750 2.583 37.485 0.183 0.999 3.760 4.013 1.166 37.578 3 AA_DG3DC4:DG17DC18_BB A 3 ? B 18 ? A 4 ? B 17 ? 1 A DC 4 1_555 B DG 7 1_555 A DC 5 1_555 B DG 6 1_555 0.636 0.616 3.605 0.516 -6.929 36.652 1.961 -0.921 3.444 -10.899 -0.811 37.283 4 AA_DC4DC5:DG16DG17_BB A 4 ? B 17 ? A 5 ? B 16 ? 1 A DC 5 1_555 B DG 6 1_555 A DG 6 1_555 B DC 5 1_555 0.327 0.858 3.290 0.172 5.393 39.227 0.620 -0.462 3.375 7.987 -0.255 39.582 5 AA_DC5DG6:DC15DG16_BB A 5 ? B 16 ? A 6 ? B 15 ? 1 A DG 6 1_555 B DC 5 1_555 A DG 7 1_555 B DC 4 1_555 -0.573 0.120 3.435 -1.941 -1.796 29.625 0.631 0.687 3.452 -3.504 3.787 29.740 6 AA_DG6DG7:DC14DC15_BB A 6 ? B 15 ? A 7 ? B 14 ? 1 A DG 7 1_555 B DC 4 1_555 A DC 8 1_555 B DG 3 1_555 0.817 0.138 3.388 7.773 -1.490 35.201 0.448 -0.148 3.476 -2.426 -12.656 36.052 7 AA_DG7DC8:DG13DC14_BB A 7 ? B 14 ? A 8 ? B 13 ? 1 A DC 8 1_555 B DG 3 1_555 A DG 9 1_555 B DC 2 1_555 -0.747 0.944 3.440 1.149 11.222 34.209 -0.224 1.389 3.539 18.464 -1.891 35.968 8 AA_DC8DG9:DC12DG13_BB A 8 ? B 13 ? A 9 ? B 12 ? 1 A DG 9 1_555 B DC 2 1_555 A DG 10 1_555 B DC 1 1_555 0.439 0.376 3.120 -5.203 7.737 32.523 -0.552 -1.562 3.023 13.474 9.061 33.799 9 AA_DG9DG10:DC11DC12_BB A 9 ? B 12 ? A 10 ? B 11 ? # _atom_sites.entry_id 1QC1 _atom_sites.fract_transf_matrix[1][1] 0.018622 _atom_sites.fract_transf_matrix[1][2] 0.010751 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.021503 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.022222 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C MG N O P # loop_