HEADER RNA 18-MAY-99 1QC8 TITLE NMR STRUCTURE OF TAU EXON 10 SPLICING REGULATORY ELEMENT RNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: TAU EXON 10 SPLICING REGULATORY ELEMENT RNA; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: THIS SEQUENCE OCCURS NATURALLY IN HUMANS KEYWDS ALTERNATIVE MRNA SPLICING, FRONTOTEMPORAL DEMENTIA FTDP-17, INTRONIC KEYWDS 2 MUTATIONS, STEM-LOOP RNA STRUCTURE, TAU GENE EXON 10, RNA EXPDTA SOLUTION NMR NUMMDL 29 AUTHOR L.VARANI,M.G.SPILLANTINI,A.KLUG,M.GOEDERT,G.VARANI REVDAT 5 02-MAR-22 1QC8 1 REMARK REVDAT 4 24-FEB-09 1QC8 1 VERSN REVDAT 3 01-APR-03 1QC8 1 JRNL REVDAT 2 20-MAR-00 1QC8 3 ATOM REVDAT 1 31-AUG-99 1QC8 0 JRNL AUTH L.VARANI,M.HASEGAWA,M.G.SPILLANTINI,M.J.SMITH,J.R.MURRELL, JRNL AUTH 2 B.GHETTI,A.KLUG,M.GOEDERT,G.VARANI JRNL TITL STRUCTURE OF TAU EXON 10 SPLICING REGULATORY ELEMENT RNA AND JRNL TITL 2 DESTABILIZATION BY MUTATIONS OF FRONTOTEMPORAL DEMENTIA AND JRNL TITL 3 PARKINSONISM LINKED TO CHROMOSOME 17. JRNL REF PROC.NATL.ACAD.SCI.USA V. 96 8229 1999 JRNL REFN ISSN 0027-8424 JRNL PMID 10393977 JRNL DOI 10.1073/PNAS.96.14.8229 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : UXNMR, X-PLOR 3.851 REMARK 3 AUTHORS : BRUNGER (X-PLOR) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 NOE DISTANCE CONSTRAINTS: 564, INTRARESIDUE: 331, SEQUENTIAL: 181, REMARK 3 LONG AND REMARK 3 MEDIUM RANGE: 52, HYDROGEN BONDING AND PLANARITY CONSTRAINTS: 90, REMARK 3 DIHEDRAL REMARK 3 CONSTRAINTS: 124, TOTAL EXPERIMENTAL CONSTRAINTS: 778, AVERAGE REMARK 3 NUMBER PER REMARK 3 NUCLEOTIDE: 31.1 REMARK 4 REMARK 4 1QC8 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY NDB. REMARK 100 THE DEPOSITION ID IS D_1000009099. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 300; 300 REMARK 210 PH : 6; 6 REMARK 210 IONIC STRENGTH : 10MM NAPHOSPHATE BUFFER PH 6; REMARK 210 10MM NAPHOSPHATE BUFFER PH 6 REMARK 210 PRESSURE : NULL; NULL REMARK 210 SAMPLE CONTENTS : 1MM RNA, 10MM NAPHOSPHATE BUFFER REMARK 210 PH 6; 1MM RNA, U 15N,13C, 10MM REMARK 210 NAPHOSPHATE BUFFER PH 6 REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY; DQF-COSY; 2D REMARK 210 TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : DMX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : FELIX 2.10, FELIX 97 REMARK 210 METHOD USED : COMPLETELY RANDOM STARTING REMARK 210 COORDINATES X-PLOR BASED REMARK 210 SIMULATED ANNEALING PROTOCOL REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 29 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 G A 1 N7 - C8 - N9 ANGL. DEV. = 4.5 DEGREES REMARK 500 1 G A 1 C8 - N9 - C4 ANGL. DEV. = -2.7 DEGREES REMARK 500 1 G A 2 N7 - C8 - N9 ANGL. DEV. = 4.6 DEGREES REMARK 500 1 G A 2 C8 - N9 - C4 ANGL. DEV. = -2.7 DEGREES REMARK 500 1 A A 4 N7 - C8 - N9 ANGL. DEV. = 3.8 DEGREES REMARK 500 1 G A 5 N7 - C8 - N9 ANGL. DEV. = 4.7 DEGREES REMARK 500 1 G A 5 C8 - N9 - C4 ANGL. DEV. = -2.7 DEGREES REMARK 500 1 G A 7 N7 - C8 - N9 ANGL. DEV. = 4.6 DEGREES REMARK 500 1 G A 7 C8 - N9 - C4 ANGL. DEV. = -2.8 DEGREES REMARK 500 1 G A 9 N7 - C8 - N9 ANGL. DEV. = 4.6 DEGREES REMARK 500 1 G A 9 C8 - N9 - C4 ANGL. DEV. = -2.7 DEGREES REMARK 500 1 A A 10 N7 - C8 - N9 ANGL. DEV. = 3.7 DEGREES REMARK 500 1 G A 11 N7 - C8 - N9 ANGL. DEV. = 4.7 DEGREES REMARK 500 1 G A 11 C8 - N9 - C4 ANGL. DEV. = -2.8 DEGREES REMARK 500 1 A A 13 N7 - C8 - N9 ANGL. DEV. = 3.7 DEGREES REMARK 500 1 A A 19 N7 - C8 - N9 ANGL. DEV. = 3.8 DEGREES REMARK 500 1 A A 21 N7 - C8 - N9 ANGL. DEV. = 3.8 DEGREES REMARK 500 1 G A 23 N7 - C8 - N9 ANGL. DEV. = 4.7 DEGREES REMARK 500 1 G A 23 C8 - N9 - C4 ANGL. DEV. = -2.5 DEGREES REMARK 500 2 G A 1 N7 - C8 - N9 ANGL. DEV. = 4.5 DEGREES REMARK 500 2 G A 1 C8 - N9 - C4 ANGL. DEV. = -2.8 DEGREES REMARK 500 2 G A 2 N7 - C8 - N9 ANGL. DEV. = 4.5 DEGREES REMARK 500 2 G A 2 C8 - N9 - C4 ANGL. DEV. = -2.6 DEGREES REMARK 500 2 A A 4 N7 - C8 - N9 ANGL. DEV. = 3.7 DEGREES REMARK 500 2 G A 5 N7 - C8 - N9 ANGL. DEV. = 4.7 DEGREES REMARK 500 2 G A 5 C8 - N9 - C4 ANGL. DEV. = -2.7 DEGREES REMARK 500 2 G A 7 N7 - C8 - N9 ANGL. DEV. = 4.7 DEGREES REMARK 500 2 G A 7 C8 - N9 - C4 ANGL. DEV. = -2.7 DEGREES REMARK 500 2 G A 9 N7 - C8 - N9 ANGL. DEV. = 4.7 DEGREES REMARK 500 2 G A 9 C8 - N9 - C4 ANGL. DEV. = -2.6 DEGREES REMARK 500 2 A A 10 N7 - C8 - N9 ANGL. DEV. = 3.7 DEGREES REMARK 500 2 G A 11 N7 - C8 - N9 ANGL. DEV. = 4.6 DEGREES REMARK 500 2 G A 11 C8 - N9 - C4 ANGL. DEV. = -2.7 DEGREES REMARK 500 2 A A 13 N7 - C8 - N9 ANGL. DEV. = 3.9 DEGREES REMARK 500 2 A A 19 N7 - C8 - N9 ANGL. DEV. = 3.7 DEGREES REMARK 500 2 A A 21 N7 - C8 - N9 ANGL. DEV. = 3.8 DEGREES REMARK 500 2 G A 23 N7 - C8 - N9 ANGL. DEV. = 4.6 DEGREES REMARK 500 2 G A 23 C8 - N9 - C4 ANGL. DEV. = -2.5 DEGREES REMARK 500 3 G A 1 N7 - C8 - N9 ANGL. DEV. = 4.5 DEGREES REMARK 500 3 G A 1 C8 - N9 - C4 ANGL. DEV. = -2.8 DEGREES REMARK 500 3 G A 2 N7 - C8 - N9 ANGL. DEV. = 4.6 DEGREES REMARK 500 3 G A 2 C8 - N9 - C4 ANGL. DEV. = -2.7 DEGREES REMARK 500 3 A A 4 N7 - C8 - N9 ANGL. DEV. = 3.8 DEGREES REMARK 500 3 G A 5 N7 - C8 - N9 ANGL. DEV. = 4.6 DEGREES REMARK 500 3 G A 5 C8 - N9 - C4 ANGL. DEV. = -2.6 DEGREES REMARK 500 3 G A 7 N7 - C8 - N9 ANGL. DEV. = 4.6 DEGREES REMARK 500 3 G A 7 C8 - N9 - C4 ANGL. DEV. = -2.6 DEGREES REMARK 500 3 G A 9 N7 - C8 - N9 ANGL. DEV. = 4.6 DEGREES REMARK 500 3 G A 9 C8 - N9 - C4 ANGL. DEV. = -2.6 DEGREES REMARK 500 3 A A 10 N7 - C8 - N9 ANGL. DEV. = 3.8 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 546 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL DBREF 1QC8 A 1 25 PDB 1QC8 1QC8 1 25 SEQRES 1 A 25 G G C A G U G U G A G U A SEQRES 2 A 25 C C U U C A C A C G U C CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1