HEADER MEMBRANE PROTEINS 09-SEP-99 1QLO TITLE STRUCTURE OF THE ACTIVE DOMAIN OF THE HERPES SIMPLEX VIRUS PROTEIN TITLE 2 ICP47 IN WATER/SODIUM DODECYL SULFATE SOLUTION DETERMINED BY NUCLEAR TITLE 3 MAGNETIC RESONANCE SPECTROSCOPY COMPND MOL_ID: 1; COMPND 2 MOLECULE: HERPES SIMPLEX VIRUS PROTEIN ICP47; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: ACTIVE DOMAIN; COMPND 5 SYNONYM: IMMEDIATE-EARLY PROTEIN IE12, IMMEDIATE-EARLY-5, VMW12; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HERPES SIMPLEX VIRUS; SOURCE 3 ORGANISM_TAXID: 10299; SOURCE 4 STRAIN: TYPE 1 - STRAIN 17; SOURCE 5 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 7108 KEYWDS MEMBRANE PROTEINS, HERPES SIMPLEX VIRUS, PROTEIN ICP47 EXPDTA SOLUTION NMR NUMMDL 19 AUTHOR R.PFAENDER,L.NEUMANN,M.ZWECKSTETTER,C.SEGER,T.A.HOLAK,R.TAMPE REVDAT 3 15-JAN-20 1QLO 1 REMARK REVDAT 2 24-FEB-09 1QLO 1 VERSN REVDAT 1 14-DEC-99 1QLO 0 JRNL AUTH R.PFAENDER,L.NEUMANN,M.ZWECKSTETTER,C.SEGER,T.A.HOLAK, JRNL AUTH 2 R.TAMPE JRNL TITL THE STRUCTURE OF THE ACTIVE DOMAIN OF THE HERPES SIMPLEX JRNL TITL 2 VIRUS PROTEIN ICP47 IN WATER/SODIUM DODECYL SULFATE SOLUTION JRNL TITL 3 DETERMINED BY NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY. JRNL REF BIOCHEMISTRY V. 38 13692 1999 JRNL REFN ISSN 0006-2960 JRNL PMID 10521276 JRNL DOI 10.1021/BI9909647 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.1 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1QLO COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 09-SEP-99. REMARK 100 THE DEPOSITION ID IS D_1290004047. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 307 REMARK 210 PH : 7.4 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NOESY; TOCSY; COSY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 600 MHZ; 750 MHZ REMARK 210 SPECTROMETER MODEL : AMX; DRX; DMX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : X-PLOR 3.1 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 40 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 19 REMARK 210 CONFORMERS, SELECTION CRITERIA : LEAST RESTRAINT VIOLATION ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: SEE ARTICLE REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 16 ASP A 27 N ASP A 27 CA 0.150 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 16 GLU A 28 N - CA - C ANGL. DEV. = -20.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 2 -175.03 54.48 REMARK 500 1 TRP A 3 52.78 -97.73 REMARK 500 1 ARG A 16 57.49 -93.03 REMARK 500 1 ARG A 20 -51.70 -128.91 REMARK 500 1 ASP A 24 -74.63 -75.70 REMARK 500 1 ILE A 29 20.27 -77.30 REMARK 500 1 ARG A 32 46.49 -104.02 REMARK 500 2 TRP A 3 -148.87 -178.93 REMARK 500 2 PHE A 11 -73.92 -70.45 REMARK 500 2 MET A 15 55.12 -112.87 REMARK 500 2 VAL A 17 48.97 -158.86 REMARK 500 2 ARG A 20 -84.45 -154.32 REMARK 500 2 TYR A 22 -39.91 162.85 REMARK 500 2 ALA A 23 -81.64 -59.76 REMARK 500 2 ASP A 27 -25.58 -39.33 REMARK 500 2 GLU A 28 86.49 -65.12 REMARK 500 2 ILE A 29 52.62 93.56 REMARK 500 2 ASN A 30 37.30 28.78 REMARK 500 2 LYS A 31 52.50 111.22 REMARK 500 2 ARG A 32 -145.98 -162.39 REMARK 500 3 TRP A 3 -155.63 -99.13 REMARK 500 3 MET A 15 58.41 -92.99 REMARK 500 3 VAL A 17 -5.80 97.70 REMARK 500 3 ARG A 20 -142.65 -114.76 REMARK 500 3 THR A 21 -173.27 -175.64 REMARK 500 3 ASN A 30 -64.16 -103.84 REMARK 500 3 ARG A 32 42.73 -108.09 REMARK 500 4 SER A 2 -155.56 -165.33 REMARK 500 4 TRP A 3 -92.19 -64.07 REMARK 500 4 TYR A 22 -102.18 -176.11 REMARK 500 4 ALA A 23 -87.66 24.66 REMARK 500 4 ILE A 29 20.14 -77.54 REMARK 500 4 ASN A 30 -65.42 -109.23 REMARK 500 5 SER A 2 82.34 165.06 REMARK 500 5 TRP A 3 -148.19 -63.23 REMARK 500 5 PHE A 11 -70.10 172.15 REMARK 500 5 THR A 21 -166.79 -118.12 REMARK 500 5 TYR A 22 -56.31 -164.79 REMARK 500 5 ILE A 29 4.93 -65.73 REMARK 500 5 ASN A 30 -61.38 -90.56 REMARK 500 5 ARG A 32 47.31 -90.16 REMARK 500 6 ALA A 4 34.61 -84.29 REMARK 500 6 ASP A 9 -148.79 -32.16 REMARK 500 6 THR A 10 75.99 -32.38 REMARK 500 6 PHE A 11 17.64 47.94 REMARK 500 6 MET A 15 54.60 -92.81 REMARK 500 6 PRO A 19 -165.39 -79.07 REMARK 500 6 ASP A 24 -70.50 -74.98 REMARK 500 7 TRP A 3 -164.00 177.76 REMARK 500 7 ALA A 4 34.70 -96.41 REMARK 500 REMARK 500 THIS ENTRY HAS 186 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG A 16 0.26 SIDE CHAIN REMARK 500 1 ARG A 20 0.31 SIDE CHAIN REMARK 500 1 ARG A 26 0.32 SIDE CHAIN REMARK 500 1 ARG A 32 0.10 SIDE CHAIN REMARK 500 1 ARG A 34 0.28 SIDE CHAIN REMARK 500 2 ARG A 16 0.25 SIDE CHAIN REMARK 500 2 ARG A 20 0.26 SIDE CHAIN REMARK 500 2 ARG A 26 0.31 SIDE CHAIN REMARK 500 2 ARG A 32 0.29 SIDE CHAIN REMARK 500 2 ARG A 34 0.30 SIDE CHAIN REMARK 500 3 ARG A 16 0.17 SIDE CHAIN REMARK 500 3 ARG A 20 0.24 SIDE CHAIN REMARK 500 3 ARG A 26 0.29 SIDE CHAIN REMARK 500 3 ARG A 34 0.11 SIDE CHAIN REMARK 500 4 ARG A 16 0.18 SIDE CHAIN REMARK 500 4 ARG A 20 0.32 SIDE CHAIN REMARK 500 4 ARG A 26 0.21 SIDE CHAIN REMARK 500 4 ARG A 32 0.30 SIDE CHAIN REMARK 500 4 ARG A 34 0.28 SIDE CHAIN REMARK 500 5 ARG A 16 0.12 SIDE CHAIN REMARK 500 5 ARG A 20 0.31 SIDE CHAIN REMARK 500 5 ARG A 26 0.26 SIDE CHAIN REMARK 500 5 ARG A 32 0.11 SIDE CHAIN REMARK 500 6 ARG A 16 0.32 SIDE CHAIN REMARK 500 6 ARG A 20 0.17 SIDE CHAIN REMARK 500 6 ARG A 26 0.32 SIDE CHAIN REMARK 500 6 ARG A 32 0.32 SIDE CHAIN REMARK 500 6 ARG A 34 0.21 SIDE CHAIN REMARK 500 7 ARG A 16 0.28 SIDE CHAIN REMARK 500 7 ARG A 26 0.32 SIDE CHAIN REMARK 500 7 ARG A 32 0.23 SIDE CHAIN REMARK 500 7 ARG A 34 0.28 SIDE CHAIN REMARK 500 8 ARG A 16 0.26 SIDE CHAIN REMARK 500 8 ARG A 20 0.20 SIDE CHAIN REMARK 500 8 ARG A 26 0.29 SIDE CHAIN REMARK 500 8 ARG A 32 0.25 SIDE CHAIN REMARK 500 8 ARG A 34 0.20 SIDE CHAIN REMARK 500 9 ARG A 16 0.20 SIDE CHAIN REMARK 500 9 ARG A 20 0.25 SIDE CHAIN REMARK 500 9 ARG A 26 0.28 SIDE CHAIN REMARK 500 9 ARG A 32 0.31 SIDE CHAIN REMARK 500 9 ARG A 34 0.14 SIDE CHAIN REMARK 500 10 ARG A 16 0.31 SIDE CHAIN REMARK 500 10 ARG A 20 0.20 SIDE CHAIN REMARK 500 10 ARG A 26 0.29 SIDE CHAIN REMARK 500 10 ARG A 32 0.32 SIDE CHAIN REMARK 500 10 ARG A 34 0.20 SIDE CHAIN REMARK 500 11 ARG A 16 0.19 SIDE CHAIN REMARK 500 11 ARG A 20 0.28 SIDE CHAIN REMARK 500 11 ARG A 26 0.31 SIDE CHAIN REMARK 500 REMARK 500 THIS ENTRY HAS 89 PLANE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4557 RELATED DB: BMRB DBREF 1QLO A 1 34 UNP P03170 IE12_HSV11 1 34 SEQRES 1 A 34 MET SER TRP ALA LEU GLU MET ALA ASP THR PHE LEU ASP SEQRES 2 A 34 ASN MET ARG VAL GLY PRO ARG THR TYR ALA ASP VAL ARG SEQRES 3 A 34 ASP GLU ILE ASN LYS ARG GLY ARG HELIX 1 1 ALA A 4 ASN A 14 1 11 HELIX 2 2 THR A 21 ARG A 32 1 12 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1