data_1QP5 # _entry.id 1QP5 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.386 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1QP5 pdb_00001qp5 10.2210/pdb1qp5/pdb NDB BD0022 ? ? RCSB RCSB009134 ? ? WWPDB D_1000009134 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1999-06-14 2 'Structure model' 1 1 2008-04-27 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2017-10-04 5 'Structure model' 1 4 2024-02-14 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Refinement description' 4 5 'Structure model' 'Data collection' 5 5 'Structure model' 'Database references' 6 5 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' software 2 5 'Structure model' chem_comp_atom 3 5 'Structure model' chem_comp_bond 4 5 'Structure model' database_2 5 5 'Structure model' pdbx_struct_conn_angle 6 5 'Structure model' struct_conn 7 5 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_software.name' 2 5 'Structure model' '_database_2.pdbx_DOI' 3 5 'Structure model' '_database_2.pdbx_database_accession' 4 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_asym_id' 5 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 6 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 7 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 8 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 9 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 10 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 11 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_symmetry' 12 5 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_asym_id' 13 5 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_seq_id' 14 5 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 15 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_asym_id' 16 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 17 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 18 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 19 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 20 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 21 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 22 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_symmetry' 23 5 'Structure model' '_pdbx_struct_conn_angle.value' 24 5 'Structure model' '_struct_conn.pdbx_dist_value' 25 5 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 26 5 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 27 5 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 28 5 'Structure model' '_struct_conn.ptnr1_label_asym_id' 29 5 'Structure model' '_struct_conn.ptnr1_label_atom_id' 30 5 'Structure model' '_struct_conn.ptnr1_label_comp_id' 31 5 'Structure model' '_struct_conn.ptnr1_label_seq_id' 32 5 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 33 5 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 34 5 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 35 5 'Structure model' '_struct_conn.ptnr2_label_asym_id' 36 5 'Structure model' '_struct_conn.ptnr2_label_atom_id' 37 5 'Structure model' '_struct_conn.ptnr2_label_comp_id' 38 5 'Structure model' '_struct_conn.ptnr2_label_seq_id' 39 5 'Structure model' '_struct_conn.ptnr2_symmetry' 40 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 41 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 42 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1QP5 _pdbx_database_status.recvd_initial_deposition_date 1999-06-01 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # _pdbx_database_related.db_name NDB _pdbx_database_related.db_id BDL034 _pdbx_database_related.details 'COORDINATES OF THE DODECAMER' _pdbx_database_related.content_type unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Timsit, Y.' 1 'Vilbois, E.' 2 'Moras, D.' 3 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary 'Base-pairing shift in the major groove of (CA)n tracts by B-DNA crystal structures.' Nature 354 167 170 1991 NATUAS UK 0028-0836 0006 ? 1944598 10.1038/354167a0 1 'Self-fitting and self-modifying properties of the B-DNA molecule' J.Mol.Biol. 251 629 647 1995 JMOBAK UK 0022-2836 0070 ? ? 10.1006/jmbi.1995.0461 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Timsit, Y.' 1 ? primary 'Vilbois, E.' 2 ? primary 'Moras, D.' 3 ? 1 'Timsit, Y.' 4 ? 1 'Moras, D.' 5 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*AP*CP*CP*GP*GP*CP*GP*CP*CP*AP*CP*A)-3') ; 3617.371 1 ? ? ? ? 2 polymer syn ;DNA (5'-D(*TP*GP*TP*GP*GP*CP*GP*CP*CP*GP*GP*T)-3') ; 3710.401 1 ? ? ? ? 3 non-polymer syn 'MAGNESIUM ION' 24.305 8 ? ? ? ? 4 water nat water 18.015 107 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no no '(DA)(DC)(DC)(DG)(DG)(DC)(DG)(DC)(DC)(DA)(DC)(DA)' ACCGGCGCCACA A ? 2 polydeoxyribonucleotide no no '(DT)(DG)(DT)(DG)(DG)(DC)(DG)(DC)(DC)(DG)(DG)(DT)' TGTGGCGCCGGT B ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'MAGNESIUM ION' MG 4 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DA n 1 2 DC n 1 3 DC n 1 4 DG n 1 5 DG n 1 6 DC n 1 7 DG n 1 8 DC n 1 9 DC n 1 10 DA n 1 11 DC n 1 12 DA n 2 1 DT n 2 2 DG n 2 3 DT n 2 4 DG n 2 5 DG n 2 6 DC n 2 7 DG n 2 8 DC n 2 9 DC n 2 10 DG n 2 11 DG n 2 12 DT n # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DA 1 1 1 DA A A . n A 1 2 DC 2 2 2 DC C A . n A 1 3 DC 3 3 3 DC C A . n A 1 4 DG 4 4 4 DG G A . n A 1 5 DG 5 5 5 DG G A . n A 1 6 DC 6 6 6 DC C A . n A 1 7 DG 7 7 7 DG G A . n A 1 8 DC 8 8 8 DC C A . n A 1 9 DC 9 9 9 DC C A . n A 1 10 DA 10 10 10 DA A A . n A 1 11 DC 11 11 11 DC C A . n A 1 12 DA 12 12 12 DA A A . n B 2 1 DT 1 13 13 DT T B . n B 2 2 DG 2 14 14 DG G B . n B 2 3 DT 3 15 15 DT T B . n B 2 4 DG 4 16 16 DG G B . n B 2 5 DG 5 17 17 DG G B . n B 2 6 DC 6 18 18 DC C B . n B 2 7 DG 7 19 19 DG G B . n B 2 8 DC 8 20 20 DC C B . n B 2 9 DC 9 21 21 DC C B . n B 2 10 DG 10 22 22 DG G B . n B 2 11 DG 11 23 23 DG G B . n B 2 12 DT 12 24 24 DT T B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MG 1 68 68 MG TIP A . D 3 MG 1 75 75 MG TIP A . E 3 MG 1 80 80 MG TIP A . F 3 MG 1 87 87 MG TIP A . G 3 MG 1 99 99 MG TIP A . H 3 MG 1 112 112 MG TIP A . I 3 MG 1 61 61 MG TIP B . J 3 MG 1 119 119 MG TIP B . K 4 HOH 1 25 25 HOH TIP A . K 4 HOH 2 26 26 HOH TIP A . K 4 HOH 3 30 30 HOH TIP A . K 4 HOH 4 34 34 HOH TIP A . K 4 HOH 5 35 35 HOH TIP A . K 4 HOH 6 37 37 HOH TIP A . K 4 HOH 7 38 38 HOH TIP A . K 4 HOH 8 39 39 HOH TIP A . K 4 HOH 9 40 40 HOH TIP A . K 4 HOH 10 42 42 HOH TIP A . K 4 HOH 11 45 45 HOH TIP A . K 4 HOH 12 46 46 HOH TIP A . K 4 HOH 13 48 48 HOH TIP A . K 4 HOH 14 50 50 HOH TIP A . K 4 HOH 15 51 51 HOH TIP A . K 4 HOH 16 52 52 HOH TIP A . K 4 HOH 17 55 55 HOH TIP A . K 4 HOH 18 64 64 HOH TIP A . K 4 HOH 19 65 65 HOH TIP A . K 4 HOH 20 71 71 HOH TIP A . K 4 HOH 21 72 72 HOH TIP A . K 4 HOH 22 74 74 HOH TIP A . K 4 HOH 23 76 76 HOH TIP A . K 4 HOH 24 77 77 HOH TIP A . K 4 HOH 25 78 78 HOH TIP A . K 4 HOH 26 79 79 HOH TIP A . K 4 HOH 27 81 81 HOH TIP A . K 4 HOH 28 82 82 HOH TIP A . K 4 HOH 29 83 83 HOH TIP A . K 4 HOH 30 84 84 HOH TIP A . K 4 HOH 31 85 85 HOH TIP A . K 4 HOH 32 86 86 HOH TIP A . K 4 HOH 33 88 88 HOH TIP A . K 4 HOH 34 89 89 HOH TIP A . K 4 HOH 35 90 90 HOH TIP A . K 4 HOH 36 91 91 HOH TIP A . K 4 HOH 37 92 92 HOH TIP A . K 4 HOH 38 93 93 HOH TIP A . K 4 HOH 39 94 94 HOH TIP A . K 4 HOH 40 95 95 HOH TIP A . K 4 HOH 41 96 96 HOH TIP A . K 4 HOH 42 97 97 HOH TIP A . K 4 HOH 43 100 100 HOH TIP A . K 4 HOH 44 101 101 HOH TIP A . K 4 HOH 45 102 102 HOH TIP A . K 4 HOH 46 103 103 HOH TIP A . K 4 HOH 47 104 104 HOH TIP A . K 4 HOH 48 105 105 HOH TIP A . K 4 HOH 49 107 107 HOH TIP A . K 4 HOH 50 109 109 HOH TIP A . K 4 HOH 51 110 110 HOH TIP A . K 4 HOH 52 113 113 HOH TIP A . K 4 HOH 53 114 114 HOH TIP A . K 4 HOH 54 115 115 HOH TIP A . K 4 HOH 55 116 116 HOH TIP A . K 4 HOH 56 117 117 HOH TIP A . K 4 HOH 57 118 118 HOH TIP A . K 4 HOH 58 123 123 HOH TIP A . K 4 HOH 59 126 126 HOH TIP A . K 4 HOH 60 128 128 HOH TIP A . K 4 HOH 61 129 129 HOH TIP A . K 4 HOH 62 131 131 HOH TIP A . K 4 HOH 63 132 132 HOH TIP A . K 4 HOH 64 133 133 HOH TIP A . K 4 HOH 65 134 134 HOH TIP A . K 4 HOH 66 136 136 HOH TIP A . K 4 HOH 67 138 138 HOH TIP A . L 4 HOH 1 27 27 HOH TIP B . L 4 HOH 2 28 28 HOH TIP B . L 4 HOH 3 29 29 HOH TIP B . L 4 HOH 4 31 31 HOH TIP B . L 4 HOH 5 32 32 HOH TIP B . L 4 HOH 6 33 33 HOH TIP B . L 4 HOH 7 36 36 HOH TIP B . L 4 HOH 8 41 41 HOH TIP B . L 4 HOH 9 43 43 HOH TIP B . L 4 HOH 10 44 44 HOH TIP B . L 4 HOH 11 47 47 HOH TIP B . L 4 HOH 12 49 49 HOH TIP B . L 4 HOH 13 53 53 HOH TIP B . L 4 HOH 14 54 54 HOH TIP B . L 4 HOH 15 56 56 HOH TIP B . L 4 HOH 16 57 57 HOH TIP B . L 4 HOH 17 58 58 HOH TIP B . L 4 HOH 18 59 59 HOH TIP B . L 4 HOH 19 60 60 HOH TIP B . L 4 HOH 20 62 62 HOH TIP B . L 4 HOH 21 63 63 HOH TIP B . L 4 HOH 22 66 66 HOH TIP B . L 4 HOH 23 67 67 HOH TIP B . L 4 HOH 24 69 69 HOH TIP B . L 4 HOH 25 70 70 HOH TIP B . L 4 HOH 26 73 73 HOH TIP B . L 4 HOH 27 98 98 HOH TIP B . L 4 HOH 28 106 106 HOH TIP B . L 4 HOH 29 108 108 HOH TIP B . L 4 HOH 30 111 111 HOH TIP B . L 4 HOH 31 120 120 HOH TIP B . L 4 HOH 32 121 121 HOH TIP B . L 4 HOH 33 122 122 HOH TIP B . L 4 HOH 34 124 124 HOH TIP B . L 4 HOH 35 125 125 HOH TIP B . L 4 HOH 36 127 127 HOH TIP B . L 4 HOH 37 130 130 HOH TIP B . L 4 HOH 38 135 135 HOH TIP B . L 4 HOH 39 137 137 HOH TIP B . L 4 HOH 40 139 139 HOH TIP B . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal ULTIMA 'model building' . ? 1 NUCLSQ refinement . ? 2 X-GEN 'data reduction' . ? 3 X-GEN 'data scaling' . ? 4 ULTIMA phasing . ? 5 # _cell.entry_id 1QP5 _cell.length_a 65.900 _cell.length_b 65.900 _cell.length_c 47.100 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 9 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1QP5 _symmetry.space_group_name_H-M 'H 3' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting trigonal _symmetry.Int_Tables_number 146 # _exptl.entry_id 1QP5 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 52.11 _exptl_crystal.density_Matthews 2.57 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION' _exptl_crystal_grow.temp 277 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6 _exptl_crystal_grow.pdbx_details 'WATER, SPERMINE, CACODYLATE, MAGNESIUM ACETATE, pH 6.0, VAPOR DIFFUSION at 277 K' _exptl_crystal_grow.pdbx_pH_range ? # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 SPERMINE ? ? ? 1 2 2 CACODYLATE ? ? ? 1 3 3 'MAGNESIUM ACETATE' ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 258 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'AREA DETECTOR' _diffrn_detector.type SIEMENS _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type RIGAKU _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength 1.5418 _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 1QP5 _reflns.observed_criterion_sigma_I 1.0 _reflns.observed_criterion_sigma_F 2.0 _reflns.d_resolution_low 15.0 _reflns.d_resolution_high 2.6 _reflns.number_obs 1603 _reflns.number_all 3519 _reflns.percent_possible_obs ? _reflns.pdbx_Rmerge_I_obs 0.0620000 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _refine.entry_id 1QP5 _refine.ls_number_reflns_obs 1603 _refine.ls_number_reflns_all 3519 _refine.pdbx_ls_sigma_I 1.0 _refine.pdbx_ls_sigma_F 2.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 15.0 _refine.ls_d_res_high 2.6 _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs 0.1610000 _refine.ls_R_factor_all 0.1610000 _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 486 _refine_hist.pdbx_number_atoms_ligand 8 _refine_hist.number_atoms_solvent 107 _refine_hist.number_atoms_total 601 _refine_hist.d_res_high 2.6 _refine_hist.d_res_low 15.0 # _database_PDB_matrix.entry_id 1QP5 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1QP5 _struct.title 'BASE-PAIRING SHIFT IN A DODECAMER CONTAINING A (CA)N TRACT' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1QP5 _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'DNA-DNA INTERACTION, DNA SELF-FITTING, BASE PAIR SHIFT, FRAMESHIFT MUTATION, MICROSATELLITE INSTABILITY, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 3 ? F N N 3 ? G N N 3 ? H N N 3 ? I N N 3 ? J N N 3 ? K N N 4 ? L N N 4 ? # loop_ _struct_ref.id _struct_ref.entity_id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 1 PDB 1QP5 1QP5 ? ? ? 2 2 PDB 1QP5 1QP5 ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1QP5 A 1 ? 12 ? 1QP5 1 ? 12 ? 1 12 2 2 1QP5 B 1 ? 12 ? 1QP5 13 ? 24 ? 13 24 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.pdbx_parent_biol_id ? _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? K HOH . O ? ? ? 1_555 I MG . MG ? ? A HOH 64 B MG 61 1_555 ? ? ? ? ? ? ? 2.005 ? ? metalc2 metalc ? ? K HOH . O ? ? ? 1_555 I MG . MG ? ? A HOH 65 B MG 61 1_555 ? ? ? ? ? ? ? 1.995 ? ? metalc3 metalc ? ? C MG . MG ? ? ? 1_555 K HOH . O ? ? A MG 68 A HOH 71 1_555 ? ? ? ? ? ? ? 1.982 ? ? metalc4 metalc ? ? C MG . MG ? ? ? 1_555 K HOH . O ? ? A MG 68 A HOH 72 1_555 ? ? ? ? ? ? ? 1.992 ? ? metalc5 metalc ? ? C MG . MG ? ? ? 1_555 K HOH . O ? ? A MG 68 A HOH 74 1_555 ? ? ? ? ? ? ? 1.984 ? ? metalc6 metalc ? ? C MG . MG ? ? ? 1_555 L HOH . O ? ? A MG 68 B HOH 69 1_555 ? ? ? ? ? ? ? 2.002 ? ? metalc7 metalc ? ? C MG . MG ? ? ? 1_555 L HOH . O ? ? A MG 68 B HOH 70 1_555 ? ? ? ? ? ? ? 1.988 ? ? metalc8 metalc ? ? C MG . MG ? ? ? 1_555 L HOH . O ? ? A MG 68 B HOH 73 1_555 ? ? ? ? ? ? ? 1.994 ? ? metalc9 metalc ? ? D MG . MG ? ? ? 1_555 K HOH . O ? ? A MG 75 A HOH 76 1_555 ? ? ? ? ? ? ? 2.048 ? ? metalc10 metalc ? ? D MG . MG ? ? ? 1_555 K HOH . O ? ? A MG 75 A HOH 76 2_555 ? ? ? ? ? ? ? 2.048 ? ? metalc11 metalc ? ? D MG . MG ? ? ? 1_555 K HOH . O ? ? A MG 75 A HOH 76 3_555 ? ? ? ? ? ? ? 2.048 ? ? metalc12 metalc ? ? D MG . MG ? ? ? 1_555 K HOH . O ? ? A MG 75 A HOH 77 1_555 ? ? ? ? ? ? ? 2.044 ? ? metalc13 metalc ? ? D MG . MG ? ? ? 1_555 K HOH . O ? ? A MG 75 A HOH 77 3_555 ? ? ? ? ? ? ? 2.044 ? ? metalc14 metalc ? ? D MG . MG ? ? ? 1_555 K HOH . O ? ? A MG 75 A HOH 77 2_555 ? ? ? ? ? ? ? 2.044 ? ? metalc15 metalc ? ? E MG . MG ? ? ? 1_555 K HOH . O ? ? A MG 80 A HOH 81 1_555 ? ? ? ? ? ? ? 1.984 ? ? metalc16 metalc ? ? E MG . MG ? ? ? 1_555 K HOH . O ? ? A MG 80 A HOH 82 1_555 ? ? ? ? ? ? ? 1.983 ? ? metalc17 metalc ? ? E MG . MG ? ? ? 1_555 K HOH . O ? ? A MG 80 A HOH 83 1_555 ? ? ? ? ? ? ? 1.992 ? ? metalc18 metalc ? ? E MG . MG ? ? ? 1_555 K HOH . O ? ? A MG 80 A HOH 84 1_555 ? ? ? ? ? ? ? 1.993 ? ? metalc19 metalc ? ? E MG . MG ? ? ? 1_555 K HOH . O ? ? A MG 80 A HOH 85 1_555 ? ? ? ? ? ? ? 1.989 ? ? metalc20 metalc ? ? E MG . MG ? ? ? 1_555 K HOH . O ? ? A MG 80 A HOH 86 1_555 ? ? ? ? ? ? ? 2.003 ? ? metalc21 metalc ? ? F MG . MG ? ? ? 1_555 K HOH . O ? ? A MG 87 A HOH 88 1_555 ? ? ? ? ? ? ? 1.987 ? ? metalc22 metalc ? ? F MG . MG ? ? ? 1_555 K HOH . O ? ? A MG 87 A HOH 89 1_555 ? ? ? ? ? ? ? 1.994 ? ? metalc23 metalc ? ? F MG . MG ? ? ? 1_555 K HOH . O ? ? A MG 87 A HOH 90 1_555 ? ? ? ? ? ? ? 1.996 ? ? metalc24 metalc ? ? F MG . MG ? ? ? 1_555 K HOH . O ? ? A MG 87 A HOH 91 1_555 ? ? ? ? ? ? ? 1.988 ? ? metalc25 metalc ? ? F MG . MG ? ? ? 1_555 K HOH . O ? ? A MG 87 A HOH 92 1_555 ? ? ? ? ? ? ? 1.983 ? ? metalc26 metalc ? ? F MG . MG ? ? ? 1_555 K HOH . O ? ? A MG 87 A HOH 93 1_555 ? ? ? ? ? ? ? 1.984 ? ? metalc27 metalc ? ? G MG . MG ? ? ? 1_555 K HOH . O ? ? A MG 99 A HOH 100 1_555 ? ? ? ? ? ? ? 1.988 ? ? metalc28 metalc ? ? G MG . MG ? ? ? 1_555 K HOH . O ? ? A MG 99 A HOH 101 1_555 ? ? ? ? ? ? ? 1.994 ? ? metalc29 metalc ? ? G MG . MG ? ? ? 1_555 K HOH . O ? ? A MG 99 A HOH 102 1_555 ? ? ? ? ? ? ? 1.985 ? ? metalc30 metalc ? ? G MG . MG ? ? ? 1_555 K HOH . O ? ? A MG 99 A HOH 103 1_555 ? ? ? ? ? ? ? 1.983 ? ? metalc31 metalc ? ? G MG . MG ? ? ? 1_555 K HOH . O ? ? A MG 99 A HOH 104 1_555 ? ? ? ? ? ? ? 2.001 ? ? metalc32 metalc ? ? G MG . MG ? ? ? 1_555 K HOH . O ? ? A MG 99 A HOH 105 1_555 ? ? ? ? ? ? ? 1.989 ? ? metalc33 metalc ? ? H MG . MG ? ? ? 1_555 K HOH . O ? ? A MG 112 A HOH 113 1_555 ? ? ? ? ? ? ? 1.995 ? ? metalc34 metalc ? ? H MG . MG ? ? ? 1_555 K HOH . O ? ? A MG 112 A HOH 114 1_555 ? ? ? ? ? ? ? 1.991 ? ? metalc35 metalc ? ? H MG . MG ? ? ? 1_555 K HOH . O ? ? A MG 112 A HOH 115 1_555 ? ? ? ? ? ? ? 1.992 ? ? metalc36 metalc ? ? H MG . MG ? ? ? 1_555 K HOH . O ? ? A MG 112 A HOH 116 1_555 ? ? ? ? ? ? ? 1.982 ? ? metalc37 metalc ? ? H MG . MG ? ? ? 1_555 K HOH . O ? ? A MG 112 A HOH 117 1_555 ? ? ? ? ? ? ? 1.982 ? ? metalc38 metalc ? ? H MG . MG ? ? ? 1_555 K HOH . O ? ? A MG 112 A HOH 118 1_555 ? ? ? ? ? ? ? 1.983 ? ? metalc39 metalc ? ? K HOH . O ? ? ? 1_555 J MG . MG ? ? A HOH 123 B MG 119 1_555 ? ? ? ? ? ? ? 1.988 ? ? metalc40 metalc ? ? B DG 7 O6 ? ? ? 1_555 I MG . MG ? ? B DG 19 B MG 61 1_555 ? ? ? ? ? ? ? 3.149 ? ? metalc41 metalc ? ? I MG . MG ? ? ? 1_555 L HOH . O ? ? B MG 61 B HOH 62 1_555 ? ? ? ? ? ? ? 1.984 ? ? metalc42 metalc ? ? I MG . MG ? ? ? 1_555 L HOH . O ? ? B MG 61 B HOH 63 1_555 ? ? ? ? ? ? ? 1.982 ? ? metalc43 metalc ? ? I MG . MG ? ? ? 1_555 L HOH . O ? ? B MG 61 B HOH 66 1_555 ? ? ? ? ? ? ? 1.970 ? ? metalc44 metalc ? ? I MG . MG ? ? ? 1_555 L HOH . O ? ? B MG 61 B HOH 67 1_555 ? ? ? ? ? ? ? 1.992 ? ? metalc45 metalc ? ? J MG . MG ? ? ? 1_555 L HOH . O ? ? B MG 119 B HOH 120 1_555 ? ? ? ? ? ? ? 1.990 ? ? metalc46 metalc ? ? J MG . MG ? ? ? 1_555 L HOH . O ? ? B MG 119 B HOH 121 1_555 ? ? ? ? ? ? ? 1.984 ? ? metalc47 metalc ? ? J MG . MG ? ? ? 1_555 L HOH . O ? ? B MG 119 B HOH 122 1_555 ? ? ? ? ? ? ? 1.994 ? ? metalc48 metalc ? ? J MG . MG ? ? ? 1_555 L HOH . O ? ? B MG 119 B HOH 124 1_555 ? ? ? ? ? ? ? 1.989 ? ? metalc49 metalc ? ? J MG . MG ? ? ? 1_555 L HOH . O ? ? B MG 119 B HOH 125 1_555 ? ? ? ? ? ? ? 1.989 ? ? hydrog1 hydrog ? ? A DA 1 N1 ? ? ? 1_555 B DG 11 N1 ? ? A DA 1 B DG 23 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog2 hydrog ? ? A DA 1 N6 ? ? ? 1_555 B DG 11 O6 ? ? A DA 1 B DG 23 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog3 hydrog ? ? A DC 2 N4 ? ? ? 1_555 B DG 10 O6 ? ? A DC 2 B DG 22 1_555 ? ? ? ? ? ? 'DC-DG PAIR' ? ? ? hydrog4 hydrog ? ? A DC 2 O2 ? ? ? 1_555 B DG 11 N2 ? ? A DC 2 B DG 23 1_555 ? ? ? ? ? ? 'DC-DG PAIR' ? ? ? hydrog5 hydrog ? ? A DG 4 N1 ? ? ? 1_555 B DC 8 N3 ? ? A DG 4 B DC 20 1_555 ? ? ? ? ? ? 'DG-DC PAIR' ? ? ? hydrog6 hydrog ? ? A DG 4 N2 ? ? ? 1_555 B DC 9 O2 ? ? A DG 4 B DC 21 1_555 ? ? ? ? ? ? 'DG-DC PAIR' ? ? ? hydrog7 hydrog ? ? A DG 5 N1 ? ? ? 1_555 B DC 8 O2 ? ? A DG 5 B DC 20 1_555 ? ? ? ? ? ? 'DG-DC PAIR' ? ? ? hydrog8 hydrog ? ? A DC 6 O2 ? ? ? 1_555 B DG 7 N2 ? ? A DC 6 B DG 19 1_555 ? ? ? ? ? ? 'DC-DG PAIR' ? ? ? hydrog9 hydrog ? ? A DG 7 N1 ? ? ? 1_555 B DG 5 O6 ? ? A DG 7 B DG 17 1_555 ? ? ? ? ? ? 'DG-DG MISPAIR' ? ? ? hydrog10 hydrog ? ? A DG 7 N2 ? ? ? 1_555 B DC 6 O2 ? ? A DG 7 B DC 18 1_555 ? ? ? ? ? ? 'DG-DC PAIR' ? ? ? hydrog11 hydrog ? ? A DC 8 N4 ? ? ? 1_555 B DG 4 O6 ? ? A DC 8 B DG 16 1_555 ? ? ? ? ? ? 'DC-DG PAIR' ? ? ? hydrog12 hydrog ? ? A DC 8 O2 ? ? ? 1_555 B DG 5 N2 ? ? A DC 8 B DG 17 1_555 ? ? ? ? ? ? 'DC-DG PAIR' ? ? ? hydrog13 hydrog ? ? A DC 9 N3 ? ? ? 1_555 B DT 3 N3 ? ? A DC 9 B DT 15 1_555 ? ? ? ? ? ? TYPE_18_PAIR ? ? ? hydrog14 hydrog ? ? A DC 9 N4 ? ? ? 1_555 B DT 3 O4 ? ? A DC 9 B DT 15 1_555 ? ? ? ? ? ? TYPE_18_PAIR ? ? ? hydrog15 hydrog ? ? A DC 9 O2 ? ? ? 1_555 B DG 4 N1 ? ? A DC 9 B DG 16 1_555 ? ? ? ? ? ? 'DC-DG PAIR' ? ? ? hydrog16 hydrog ? ? A DA 10 N1 ? ? ? 1_555 B DG 2 N1 ? ? A DA 10 B DG 14 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog17 hydrog ? ? A DA 10 N6 ? ? ? 1_555 B DG 2 O6 ? ? A DA 10 B DG 14 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog18 hydrog ? ? A DC 11 N4 ? ? ? 1_555 B DT 1 O4 ? ? A DC 11 B DT 13 1_555 ? ? ? ? ? ? 'DC-DT MISPAIR' ? ? ? hydrog19 hydrog ? ? A DC 11 O2 ? ? ? 1_555 B DG 2 N2 ? ? A DC 11 B DG 14 1_555 ? ? ? ? ? ? 'DC-DG PAIR' ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O ? K HOH . ? A HOH 64 ? 1_555 MG ? I MG . ? B MG 61 ? 1_555 O ? K HOH . ? A HOH 65 ? 1_555 89.2 ? 2 O ? K HOH . ? A HOH 64 ? 1_555 MG ? I MG . ? B MG 61 ? 1_555 O6 ? B DG 7 ? B DG 19 ? 1_555 130.3 ? 3 O ? K HOH . ? A HOH 65 ? 1_555 MG ? I MG . ? B MG 61 ? 1_555 O6 ? B DG 7 ? B DG 19 ? 1_555 129.6 ? 4 O ? K HOH . ? A HOH 64 ? 1_555 MG ? I MG . ? B MG 61 ? 1_555 O ? L HOH . ? B HOH 62 ? 1_555 89.7 ? 5 O ? K HOH . ? A HOH 65 ? 1_555 MG ? I MG . ? B MG 61 ? 1_555 O ? L HOH . ? B HOH 62 ? 1_555 90.2 ? 6 O6 ? B DG 7 ? B DG 19 ? 1_555 MG ? I MG . ? B MG 61 ? 1_555 O ? L HOH . ? B HOH 62 ? 1_555 64.4 ? 7 O ? K HOH . ? A HOH 64 ? 1_555 MG ? I MG . ? B MG 61 ? 1_555 O ? L HOH . ? B HOH 63 ? 1_555 89.6 ? 8 O ? K HOH . ? A HOH 65 ? 1_555 MG ? I MG . ? B MG 61 ? 1_555 O ? L HOH . ? B HOH 63 ? 1_555 178.7 ? 9 O6 ? B DG 7 ? B DG 19 ? 1_555 MG ? I MG . ? B MG 61 ? 1_555 O ? L HOH . ? B HOH 63 ? 1_555 51.7 ? 10 O ? L HOH . ? B HOH 62 ? 1_555 MG ? I MG . ? B MG 61 ? 1_555 O ? L HOH . ? B HOH 63 ? 1_555 90.2 ? 11 O ? K HOH . ? A HOH 64 ? 1_555 MG ? I MG . ? B MG 61 ? 1_555 O ? L HOH . ? B HOH 66 ? 1_555 179.2 ? 12 O ? K HOH . ? A HOH 65 ? 1_555 MG ? I MG . ? B MG 61 ? 1_555 O ? L HOH . ? B HOH 66 ? 1_555 90.3 ? 13 O6 ? B DG 7 ? B DG 19 ? 1_555 MG ? I MG . ? B MG 61 ? 1_555 O ? L HOH . ? B HOH 66 ? 1_555 50.5 ? 14 O ? L HOH . ? B HOH 62 ? 1_555 MG ? I MG . ? B MG 61 ? 1_555 O ? L HOH . ? B HOH 66 ? 1_555 91.0 ? 15 O ? L HOH . ? B HOH 63 ? 1_555 MG ? I MG . ? B MG 61 ? 1_555 O ? L HOH . ? B HOH 66 ? 1_555 90.9 ? 16 O ? K HOH . ? A HOH 64 ? 1_555 MG ? I MG . ? B MG 61 ? 1_555 O ? L HOH . ? B HOH 67 ? 1_555 89.4 ? 17 O ? K HOH . ? A HOH 65 ? 1_555 MG ? I MG . ? B MG 61 ? 1_555 O ? L HOH . ? B HOH 67 ? 1_555 89.8 ? 18 O6 ? B DG 7 ? B DG 19 ? 1_555 MG ? I MG . ? B MG 61 ? 1_555 O ? L HOH . ? B HOH 67 ? 1_555 116.3 ? 19 O ? L HOH . ? B HOH 62 ? 1_555 MG ? I MG . ? B MG 61 ? 1_555 O ? L HOH . ? B HOH 67 ? 1_555 179.0 ? 20 O ? L HOH . ? B HOH 63 ? 1_555 MG ? I MG . ? B MG 61 ? 1_555 O ? L HOH . ? B HOH 67 ? 1_555 89.8 ? 21 O ? L HOH . ? B HOH 66 ? 1_555 MG ? I MG . ? B MG 61 ? 1_555 O ? L HOH . ? B HOH 67 ? 1_555 90.0 ? 22 O ? K HOH . ? A HOH 71 ? 1_555 MG ? C MG . ? A MG 68 ? 1_555 O ? K HOH . ? A HOH 72 ? 1_555 89.9 ? 23 O ? K HOH . ? A HOH 71 ? 1_555 MG ? C MG . ? A MG 68 ? 1_555 O ? K HOH . ? A HOH 74 ? 1_555 90.8 ? 24 O ? K HOH . ? A HOH 72 ? 1_555 MG ? C MG . ? A MG 68 ? 1_555 O ? K HOH . ? A HOH 74 ? 1_555 91.3 ? 25 O ? K HOH . ? A HOH 71 ? 1_555 MG ? C MG . ? A MG 68 ? 1_555 O ? L HOH . ? B HOH 69 ? 1_555 89.7 ? 26 O ? K HOH . ? A HOH 72 ? 1_555 MG ? C MG . ? A MG 68 ? 1_555 O ? L HOH . ? B HOH 69 ? 1_555 89.4 ? 27 O ? K HOH . ? A HOH 74 ? 1_555 MG ? C MG . ? A MG 68 ? 1_555 O ? L HOH . ? B HOH 69 ? 1_555 179.2 ? 28 O ? K HOH . ? A HOH 71 ? 1_555 MG ? C MG . ? A MG 68 ? 1_555 O ? L HOH . ? B HOH 70 ? 1_555 90.1 ? 29 O ? K HOH . ? A HOH 72 ? 1_555 MG ? C MG . ? A MG 68 ? 1_555 O ? L HOH . ? B HOH 70 ? 1_555 178.5 ? 30 O ? K HOH . ? A HOH 74 ? 1_555 MG ? C MG . ? A MG 68 ? 1_555 O ? L HOH . ? B HOH 70 ? 1_555 90.2 ? 31 O ? L HOH . ? B HOH 69 ? 1_555 MG ? C MG . ? A MG 68 ? 1_555 O ? L HOH . ? B HOH 70 ? 1_555 89.2 ? 32 O ? K HOH . ? A HOH 71 ? 1_555 MG ? C MG . ? A MG 68 ? 1_555 O ? L HOH . ? B HOH 73 ? 1_555 179.4 ? 33 O ? K HOH . ? A HOH 72 ? 1_555 MG ? C MG . ? A MG 68 ? 1_555 O ? L HOH . ? B HOH 73 ? 1_555 89.9 ? 34 O ? K HOH . ? A HOH 74 ? 1_555 MG ? C MG . ? A MG 68 ? 1_555 O ? L HOH . ? B HOH 73 ? 1_555 89.7 ? 35 O ? L HOH . ? B HOH 69 ? 1_555 MG ? C MG . ? A MG 68 ? 1_555 O ? L HOH . ? B HOH 73 ? 1_555 89.7 ? 36 O ? L HOH . ? B HOH 70 ? 1_555 MG ? C MG . ? A MG 68 ? 1_555 O ? L HOH . ? B HOH 73 ? 1_555 90.1 ? 37 O ? K HOH . ? A HOH 76 ? 1_555 MG ? D MG . ? A MG 75 ? 1_555 O ? K HOH . ? A HOH 76 ? 2_555 83.8 ? 38 O ? K HOH . ? A HOH 76 ? 1_555 MG ? D MG . ? A MG 75 ? 1_555 O ? K HOH . ? A HOH 76 ? 3_555 83.8 ? 39 O ? K HOH . ? A HOH 76 ? 2_555 MG ? D MG . ? A MG 75 ? 1_555 O ? K HOH . ? A HOH 76 ? 3_555 83.8 ? 40 O ? K HOH . ? A HOH 76 ? 1_555 MG ? D MG . ? A MG 75 ? 1_555 O ? K HOH . ? A HOH 77 ? 1_555 151.2 ? 41 O ? K HOH . ? A HOH 76 ? 2_555 MG ? D MG . ? A MG 75 ? 1_555 O ? K HOH . ? A HOH 77 ? 1_555 79.0 ? 42 O ? K HOH . ? A HOH 76 ? 3_555 MG ? D MG . ? A MG 75 ? 1_555 O ? K HOH . ? A HOH 77 ? 1_555 116.7 ? 43 O ? K HOH . ? A HOH 76 ? 1_555 MG ? D MG . ? A MG 75 ? 1_555 O ? K HOH . ? A HOH 77 ? 3_555 79.0 ? 44 O ? K HOH . ? A HOH 76 ? 2_555 MG ? D MG . ? A MG 75 ? 1_555 O ? K HOH . ? A HOH 77 ? 3_555 116.7 ? 45 O ? K HOH . ? A HOH 76 ? 3_555 MG ? D MG . ? A MG 75 ? 1_555 O ? K HOH . ? A HOH 77 ? 3_555 151.2 ? 46 O ? K HOH . ? A HOH 77 ? 1_555 MG ? D MG . ? A MG 75 ? 1_555 O ? K HOH . ? A HOH 77 ? 3_555 88.3 ? 47 O ? K HOH . ? A HOH 76 ? 1_555 MG ? D MG . ? A MG 75 ? 1_555 O ? K HOH . ? A HOH 77 ? 2_555 116.7 ? 48 O ? K HOH . ? A HOH 76 ? 2_555 MG ? D MG . ? A MG 75 ? 1_555 O ? K HOH . ? A HOH 77 ? 2_555 151.2 ? 49 O ? K HOH . ? A HOH 76 ? 3_555 MG ? D MG . ? A MG 75 ? 1_555 O ? K HOH . ? A HOH 77 ? 2_555 79.0 ? 50 O ? K HOH . ? A HOH 77 ? 1_555 MG ? D MG . ? A MG 75 ? 1_555 O ? K HOH . ? A HOH 77 ? 2_555 88.3 ? 51 O ? K HOH . ? A HOH 77 ? 3_555 MG ? D MG . ? A MG 75 ? 1_555 O ? K HOH . ? A HOH 77 ? 2_555 88.3 ? 52 O ? K HOH . ? A HOH 81 ? 1_555 MG ? E MG . ? A MG 80 ? 1_555 O ? K HOH . ? A HOH 82 ? 1_555 90.8 ? 53 O ? K HOH . ? A HOH 81 ? 1_555 MG ? E MG . ? A MG 80 ? 1_555 O ? K HOH . ? A HOH 83 ? 1_555 90.4 ? 54 O ? K HOH . ? A HOH 82 ? 1_555 MG ? E MG . ? A MG 80 ? 1_555 O ? K HOH . ? A HOH 83 ? 1_555 89.6 ? 55 O ? K HOH . ? A HOH 81 ? 1_555 MG ? E MG . ? A MG 80 ? 1_555 O ? K HOH . ? A HOH 84 ? 1_555 89.7 ? 56 O ? K HOH . ? A HOH 82 ? 1_555 MG ? E MG . ? A MG 80 ? 1_555 O ? K HOH . ? A HOH 84 ? 1_555 179.4 ? 57 O ? K HOH . ? A HOH 83 ? 1_555 MG ? E MG . ? A MG 80 ? 1_555 O ? K HOH . ? A HOH 84 ? 1_555 90.1 ? 58 O ? K HOH . ? A HOH 81 ? 1_555 MG ? E MG . ? A MG 80 ? 1_555 O ? K HOH . ? A HOH 85 ? 1_555 89.8 ? 59 O ? K HOH . ? A HOH 82 ? 1_555 MG ? E MG . ? A MG 80 ? 1_555 O ? K HOH . ? A HOH 85 ? 1_555 90.2 ? 60 O ? K HOH . ? A HOH 83 ? 1_555 MG ? E MG . ? A MG 80 ? 1_555 O ? K HOH . ? A HOH 85 ? 1_555 179.7 ? 61 O ? K HOH . ? A HOH 84 ? 1_555 MG ? E MG . ? A MG 80 ? 1_555 O ? K HOH . ? A HOH 85 ? 1_555 90.1 ? 62 O ? K HOH . ? A HOH 81 ? 1_555 MG ? E MG . ? A MG 80 ? 1_555 O ? K HOH . ? A HOH 86 ? 1_555 178.5 ? 63 O ? K HOH . ? A HOH 82 ? 1_555 MG ? E MG . ? A MG 80 ? 1_555 O ? K HOH . ? A HOH 86 ? 1_555 90.5 ? 64 O ? K HOH . ? A HOH 83 ? 1_555 MG ? E MG . ? A MG 80 ? 1_555 O ? K HOH . ? A HOH 86 ? 1_555 90.4 ? 65 O ? K HOH . ? A HOH 84 ? 1_555 MG ? E MG . ? A MG 80 ? 1_555 O ? K HOH . ? A HOH 86 ? 1_555 89.0 ? 66 O ? K HOH . ? A HOH 85 ? 1_555 MG ? E MG . ? A MG 80 ? 1_555 O ? K HOH . ? A HOH 86 ? 1_555 89.3 ? 67 O ? K HOH . ? A HOH 88 ? 1_555 MG ? F MG . ? A MG 87 ? 1_555 O ? K HOH . ? A HOH 89 ? 1_555 89.7 ? 68 O ? K HOH . ? A HOH 88 ? 1_555 MG ? F MG . ? A MG 87 ? 1_555 O ? K HOH . ? A HOH 90 ? 1_555 90.0 ? 69 O ? K HOH . ? A HOH 89 ? 1_555 MG ? F MG . ? A MG 87 ? 1_555 O ? K HOH . ? A HOH 90 ? 1_555 90.1 ? 70 O ? K HOH . ? A HOH 88 ? 1_555 MG ? F MG . ? A MG 87 ? 1_555 O ? K HOH . ? A HOH 91 ? 1_555 90.0 ? 71 O ? K HOH . ? A HOH 89 ? 1_555 MG ? F MG . ? A MG 87 ? 1_555 O ? K HOH . ? A HOH 91 ? 1_555 179.4 ? 72 O ? K HOH . ? A HOH 90 ? 1_555 MG ? F MG . ? A MG 87 ? 1_555 O ? K HOH . ? A HOH 91 ? 1_555 89.4 ? 73 O ? K HOH . ? A HOH 88 ? 1_555 MG ? F MG . ? A MG 87 ? 1_555 O ? K HOH . ? A HOH 92 ? 1_555 90.4 ? 74 O ? K HOH . ? A HOH 89 ? 1_555 MG ? F MG . ? A MG 87 ? 1_555 O ? K HOH . ? A HOH 92 ? 1_555 90.6 ? 75 O ? K HOH . ? A HOH 90 ? 1_555 MG ? F MG . ? A MG 87 ? 1_555 O ? K HOH . ? A HOH 92 ? 1_555 179.2 ? 76 O ? K HOH . ? A HOH 91 ? 1_555 MG ? F MG . ? A MG 87 ? 1_555 O ? K HOH . ? A HOH 92 ? 1_555 89.9 ? 77 O ? K HOH . ? A HOH 88 ? 1_555 MG ? F MG . ? A MG 87 ? 1_555 O ? K HOH . ? A HOH 93 ? 1_555 179.2 ? 78 O ? K HOH . ? A HOH 89 ? 1_555 MG ? F MG . ? A MG 87 ? 1_555 O ? K HOH . ? A HOH 93 ? 1_555 89.5 ? 79 O ? K HOH . ? A HOH 90 ? 1_555 MG ? F MG . ? A MG 87 ? 1_555 O ? K HOH . ? A HOH 93 ? 1_555 89.9 ? 80 O ? K HOH . ? A HOH 91 ? 1_555 MG ? F MG . ? A MG 87 ? 1_555 O ? K HOH . ? A HOH 93 ? 1_555 90.8 ? 81 O ? K HOH . ? A HOH 92 ? 1_555 MG ? F MG . ? A MG 87 ? 1_555 O ? K HOH . ? A HOH 93 ? 1_555 89.7 ? 82 O ? K HOH . ? A HOH 100 ? 1_555 MG ? G MG . ? A MG 99 ? 1_555 O ? K HOH . ? A HOH 101 ? 1_555 90.7 ? 83 O ? K HOH . ? A HOH 100 ? 1_555 MG ? G MG . ? A MG 99 ? 1_555 O ? K HOH . ? A HOH 102 ? 1_555 90.1 ? 84 O ? K HOH . ? A HOH 101 ? 1_555 MG ? G MG . ? A MG 99 ? 1_555 O ? K HOH . ? A HOH 102 ? 1_555 89.8 ? 85 O ? K HOH . ? A HOH 100 ? 1_555 MG ? G MG . ? A MG 99 ? 1_555 O ? K HOH . ? A HOH 103 ? 1_555 90.0 ? 86 O ? K HOH . ? A HOH 101 ? 1_555 MG ? G MG . ? A MG 99 ? 1_555 O ? K HOH . ? A HOH 103 ? 1_555 179.2 ? 87 O ? K HOH . ? A HOH 102 ? 1_555 MG ? G MG . ? A MG 99 ? 1_555 O ? K HOH . ? A HOH 103 ? 1_555 89.9 ? 88 O ? K HOH . ? A HOH 100 ? 1_555 MG ? G MG . ? A MG 99 ? 1_555 O ? K HOH . ? A HOH 104 ? 1_555 90.1 ? 89 O ? K HOH . ? A HOH 101 ? 1_555 MG ? G MG . ? A MG 99 ? 1_555 O ? K HOH . ? A HOH 104 ? 1_555 89.4 ? 90 O ? K HOH . ? A HOH 102 ? 1_555 MG ? G MG . ? A MG 99 ? 1_555 O ? K HOH . ? A HOH 104 ? 1_555 179.1 ? 91 O ? K HOH . ? A HOH 103 ? 1_555 MG ? G MG . ? A MG 99 ? 1_555 O ? K HOH . ? A HOH 104 ? 1_555 90.9 ? 92 O ? K HOH . ? A HOH 100 ? 1_555 MG ? G MG . ? A MG 99 ? 1_555 O ? K HOH . ? A HOH 105 ? 1_555 179.7 ? 93 O ? K HOH . ? A HOH 101 ? 1_555 MG ? G MG . ? A MG 99 ? 1_555 O ? K HOH . ? A HOH 105 ? 1_555 89.3 ? 94 O ? K HOH . ? A HOH 102 ? 1_555 MG ? G MG . ? A MG 99 ? 1_555 O ? K HOH . ? A HOH 105 ? 1_555 90.2 ? 95 O ? K HOH . ? A HOH 103 ? 1_555 MG ? G MG . ? A MG 99 ? 1_555 O ? K HOH . ? A HOH 105 ? 1_555 89.9 ? 96 O ? K HOH . ? A HOH 104 ? 1_555 MG ? G MG . ? A MG 99 ? 1_555 O ? K HOH . ? A HOH 105 ? 1_555 89.6 ? 97 O ? K HOH . ? A HOH 113 ? 1_555 MG ? H MG . ? A MG 112 ? 1_555 O ? K HOH . ? A HOH 114 ? 1_555 89.7 ? 98 O ? K HOH . ? A HOH 113 ? 1_555 MG ? H MG . ? A MG 112 ? 1_555 O ? K HOH . ? A HOH 115 ? 1_555 89.8 ? 99 O ? K HOH . ? A HOH 114 ? 1_555 MG ? H MG . ? A MG 112 ? 1_555 O ? K HOH . ? A HOH 115 ? 1_555 89.7 ? 100 O ? K HOH . ? A HOH 113 ? 1_555 MG ? H MG . ? A MG 112 ? 1_555 O ? K HOH . ? A HOH 116 ? 1_555 90.0 ? 101 O ? K HOH . ? A HOH 114 ? 1_555 MG ? H MG . ? A MG 112 ? 1_555 O ? K HOH . ? A HOH 116 ? 1_555 179.6 ? 102 O ? K HOH . ? A HOH 115 ? 1_555 MG ? H MG . ? A MG 112 ? 1_555 O ? K HOH . ? A HOH 116 ? 1_555 89.9 ? 103 O ? K HOH . ? A HOH 113 ? 1_555 MG ? H MG . ? A MG 112 ? 1_555 O ? K HOH . ? A HOH 117 ? 1_555 89.8 ? 104 O ? K HOH . ? A HOH 114 ? 1_555 MG ? H MG . ? A MG 112 ? 1_555 O ? K HOH . ? A HOH 117 ? 1_555 89.8 ? 105 O ? K HOH . ? A HOH 115 ? 1_555 MG ? H MG . ? A MG 112 ? 1_555 O ? K HOH . ? A HOH 117 ? 1_555 179.4 ? 106 O ? K HOH . ? A HOH 116 ? 1_555 MG ? H MG . ? A MG 112 ? 1_555 O ? K HOH . ? A HOH 117 ? 1_555 90.5 ? 107 O ? K HOH . ? A HOH 113 ? 1_555 MG ? H MG . ? A MG 112 ? 1_555 O ? K HOH . ? A HOH 118 ? 1_555 179.7 ? 108 O ? K HOH . ? A HOH 114 ? 1_555 MG ? H MG . ? A MG 112 ? 1_555 O ? K HOH . ? A HOH 118 ? 1_555 90.0 ? 109 O ? K HOH . ? A HOH 115 ? 1_555 MG ? H MG . ? A MG 112 ? 1_555 O ? K HOH . ? A HOH 118 ? 1_555 90.3 ? 110 O ? K HOH . ? A HOH 116 ? 1_555 MG ? H MG . ? A MG 112 ? 1_555 O ? K HOH . ? A HOH 118 ? 1_555 90.3 ? 111 O ? K HOH . ? A HOH 117 ? 1_555 MG ? H MG . ? A MG 112 ? 1_555 O ? K HOH . ? A HOH 118 ? 1_555 90.1 ? 112 O ? K HOH . ? A HOH 123 ? 1_555 MG ? J MG . ? B MG 119 ? 1_555 O ? L HOH . ? B HOH 120 ? 1_555 89.5 ? 113 O ? K HOH . ? A HOH 123 ? 1_555 MG ? J MG . ? B MG 119 ? 1_555 O ? L HOH . ? B HOH 121 ? 1_555 179.8 ? 114 O ? L HOH . ? B HOH 120 ? 1_555 MG ? J MG . ? B MG 119 ? 1_555 O ? L HOH . ? B HOH 121 ? 1_555 90.5 ? 115 O ? K HOH . ? A HOH 123 ? 1_555 MG ? J MG . ? B MG 119 ? 1_555 O ? L HOH . ? B HOH 122 ? 1_555 90.3 ? 116 O ? L HOH . ? B HOH 120 ? 1_555 MG ? J MG . ? B MG 119 ? 1_555 O ? L HOH . ? B HOH 122 ? 1_555 89.9 ? 117 O ? L HOH . ? B HOH 121 ? 1_555 MG ? J MG . ? B MG 119 ? 1_555 O ? L HOH . ? B HOH 122 ? 1_555 89.5 ? 118 O ? K HOH . ? A HOH 123 ? 1_555 MG ? J MG . ? B MG 119 ? 1_555 O ? L HOH . ? B HOH 124 ? 1_555 90.2 ? 119 O ? L HOH . ? B HOH 120 ? 1_555 MG ? J MG . ? B MG 119 ? 1_555 O ? L HOH . ? B HOH 124 ? 1_555 90.4 ? 120 O ? L HOH . ? B HOH 121 ? 1_555 MG ? J MG . ? B MG 119 ? 1_555 O ? L HOH . ? B HOH 124 ? 1_555 90.0 ? 121 O ? L HOH . ? B HOH 122 ? 1_555 MG ? J MG . ? B MG 119 ? 1_555 O ? L HOH . ? B HOH 124 ? 1_555 179.4 ? 122 O ? K HOH . ? A HOH 123 ? 1_555 MG ? J MG . ? B MG 119 ? 1_555 O ? L HOH . ? B HOH 125 ? 1_555 89.9 ? 123 O ? L HOH . ? B HOH 120 ? 1_555 MG ? J MG . ? B MG 119 ? 1_555 O ? L HOH . ? B HOH 125 ? 1_555 179.3 ? 124 O ? L HOH . ? B HOH 121 ? 1_555 MG ? J MG . ? B MG 119 ? 1_555 O ? L HOH . ? B HOH 125 ? 1_555 90.1 ? 125 O ? L HOH . ? B HOH 122 ? 1_555 MG ? J MG . ? B MG 119 ? 1_555 O ? L HOH . ? B HOH 125 ? 1_555 89.8 ? 126 O ? L HOH . ? B HOH 124 ? 1_555 MG ? J MG . ? B MG 119 ? 1_555 O ? L HOH . ? B HOH 125 ? 1_555 89.9 ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software B MG 61 ? 7 'BINDING SITE FOR RESIDUE MG B 61' AC2 Software A MG 68 ? 8 'BINDING SITE FOR RESIDUE MG A 68' AC3 Software A MG 75 ? 6 'BINDING SITE FOR RESIDUE MG A 75' AC4 Software A MG 80 ? 6 'BINDING SITE FOR RESIDUE MG A 80' AC5 Software A MG 87 ? 6 'BINDING SITE FOR RESIDUE MG A 87' AC6 Software A MG 99 ? 6 'BINDING SITE FOR RESIDUE MG A 99' AC7 Software A MG 112 ? 6 'BINDING SITE FOR RESIDUE MG A 112' AC8 Software B MG 119 ? 6 'BINDING SITE FOR RESIDUE MG B 119' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 7 HOH K . ? HOH A 64 . ? 1_555 ? 2 AC1 7 HOH K . ? HOH A 65 . ? 1_555 ? 3 AC1 7 DG B 7 ? DG B 19 . ? 1_555 ? 4 AC1 7 HOH L . ? HOH B 62 . ? 1_555 ? 5 AC1 7 HOH L . ? HOH B 63 . ? 1_555 ? 6 AC1 7 HOH L . ? HOH B 66 . ? 1_555 ? 7 AC1 7 HOH L . ? HOH B 67 . ? 1_555 ? 8 AC2 8 DG A 7 ? DG A 7 . ? 1_555 ? 9 AC2 8 HOH K . ? HOH A 71 . ? 1_555 ? 10 AC2 8 HOH K . ? HOH A 72 . ? 1_555 ? 11 AC2 8 HOH K . ? HOH A 74 . ? 1_555 ? 12 AC2 8 DG B 5 ? DG B 17 . ? 1_555 ? 13 AC2 8 HOH L . ? HOH B 69 . ? 1_555 ? 14 AC2 8 HOH L . ? HOH B 70 . ? 1_555 ? 15 AC2 8 HOH L . ? HOH B 73 . ? 1_555 ? 16 AC3 6 HOH K . ? HOH A 76 . ? 1_555 ? 17 AC3 6 HOH K . ? HOH A 76 . ? 2_555 ? 18 AC3 6 HOH K . ? HOH A 76 . ? 3_555 ? 19 AC3 6 HOH K . ? HOH A 77 . ? 1_555 ? 20 AC3 6 HOH K . ? HOH A 77 . ? 2_555 ? 21 AC3 6 HOH K . ? HOH A 77 . ? 3_555 ? 22 AC4 6 HOH K . ? HOH A 81 . ? 1_555 ? 23 AC4 6 HOH K . ? HOH A 82 . ? 1_555 ? 24 AC4 6 HOH K . ? HOH A 83 . ? 1_555 ? 25 AC4 6 HOH K . ? HOH A 84 . ? 1_555 ? 26 AC4 6 HOH K . ? HOH A 85 . ? 1_555 ? 27 AC4 6 HOH K . ? HOH A 86 . ? 1_555 ? 28 AC5 6 HOH K . ? HOH A 88 . ? 1_555 ? 29 AC5 6 HOH K . ? HOH A 89 . ? 1_555 ? 30 AC5 6 HOH K . ? HOH A 90 . ? 1_555 ? 31 AC5 6 HOH K . ? HOH A 91 . ? 1_555 ? 32 AC5 6 HOH K . ? HOH A 92 . ? 1_555 ? 33 AC5 6 HOH K . ? HOH A 93 . ? 1_555 ? 34 AC6 6 HOH K . ? HOH A 100 . ? 1_555 ? 35 AC6 6 HOH K . ? HOH A 101 . ? 1_555 ? 36 AC6 6 HOH K . ? HOH A 102 . ? 1_555 ? 37 AC6 6 HOH K . ? HOH A 103 . ? 1_555 ? 38 AC6 6 HOH K . ? HOH A 104 . ? 1_555 ? 39 AC6 6 HOH K . ? HOH A 105 . ? 1_555 ? 40 AC7 6 HOH K . ? HOH A 113 . ? 1_555 ? 41 AC7 6 HOH K . ? HOH A 114 . ? 1_555 ? 42 AC7 6 HOH K . ? HOH A 115 . ? 1_555 ? 43 AC7 6 HOH K . ? HOH A 116 . ? 1_555 ? 44 AC7 6 HOH K . ? HOH A 117 . ? 1_555 ? 45 AC7 6 HOH K . ? HOH A 118 . ? 1_555 ? 46 AC8 6 HOH K . ? HOH A 123 . ? 1_555 ? 47 AC8 6 HOH L . ? HOH B 120 . ? 1_555 ? 48 AC8 6 HOH L . ? HOH B 121 . ? 1_555 ? 49 AC8 6 HOH L . ? HOH B 122 . ? 1_555 ? 50 AC8 6 HOH L . ? HOH B 124 . ? 1_555 ? 51 AC8 6 HOH L . ? HOH B 125 . ? 1_555 ? # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 OP2 _pdbx_validate_symm_contact.auth_asym_id_1 B _pdbx_validate_symm_contact.auth_comp_id_1 DT _pdbx_validate_symm_contact.auth_seq_id_1 24 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O _pdbx_validate_symm_contact.auth_asym_id_2 A _pdbx_validate_symm_contact.auth_comp_id_2 HOH _pdbx_validate_symm_contact.auth_seq_id_2 79 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 3_565 _pdbx_validate_symm_contact.dist 1.96 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 "O3'" A DG 4 ? ? P A DG 5 ? ? 1.520 1.607 -0.087 0.012 Y 2 1 "O3'" A DC 9 ? ? P A DA 10 ? ? 1.534 1.607 -0.073 0.012 Y 3 1 P A DA 10 ? ? "O5'" A DA 10 ? ? 1.669 1.593 0.076 0.010 N 4 1 "O3'" B DT 15 ? ? P B DG 16 ? ? 1.520 1.607 -0.087 0.012 Y 5 1 "O3'" B DG 16 ? ? "C3'" B DG 16 ? ? 1.334 1.419 -0.085 0.006 N 6 1 C2 B DC 20 ? ? N3 B DC 20 ? ? 1.408 1.353 0.055 0.008 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A DA 1 ? ? "C4'" A DA 1 ? ? "C3'" A DA 1 ? ? 99.82 104.50 -4.68 0.40 N 2 1 "C5'" A DA 1 ? ? "C4'" A DA 1 ? ? "O4'" A DA 1 ? ? 116.52 109.80 6.72 1.10 N 3 1 "C4'" A DA 1 ? ? "C3'" A DA 1 ? ? "C2'" A DA 1 ? ? 97.01 102.20 -5.19 0.70 N 4 1 "O4'" A DA 1 ? ? "C1'" A DA 1 ? ? N9 A DA 1 ? ? 101.88 108.00 -6.12 0.70 N 5 1 C5 A DA 1 ? ? C6 A DA 1 ? ? N1 A DA 1 ? ? 114.44 117.70 -3.26 0.50 N 6 1 "O4'" A DC 2 ? ? "C1'" A DC 2 ? ? N1 A DC 2 ? ? 102.03 108.00 -5.97 0.70 N 7 1 "C3'" A DC 3 ? ? "O3'" A DC 3 ? ? P A DG 4 ? ? 130.15 119.70 10.45 1.20 Y 8 1 "O3'" A DC 3 ? ? P A DG 4 ? ? OP2 A DG 4 ? ? 117.22 110.50 6.72 1.10 Y 9 1 OP1 A DG 4 ? ? P A DG 4 ? ? OP2 A DG 4 ? ? 110.21 119.60 -9.39 1.50 N 10 1 "O4'" A DG 4 ? ? "C1'" A DG 4 ? ? N9 A DG 4 ? ? 115.53 108.30 7.23 0.30 N 11 1 C6 A DG 4 ? ? N1 A DG 4 ? ? C2 A DG 4 ? ? 116.81 125.10 -8.29 0.60 N 12 1 N1 A DG 4 ? ? C2 A DG 4 ? ? N3 A DG 4 ? ? 128.79 123.90 4.89 0.60 N 13 1 C5 A DG 4 ? ? C6 A DG 4 ? ? N1 A DG 4 ? ? 116.82 111.50 5.32 0.50 N 14 1 C5 A DG 4 ? ? C6 A DG 4 ? ? O6 A DG 4 ? ? 122.26 128.60 -6.34 0.60 N 15 1 "C3'" A DG 4 ? ? "O3'" A DG 4 ? ? P A DG 5 ? ? 136.68 119.70 16.98 1.20 Y 16 1 OP1 A DG 5 ? ? P A DG 5 ? ? OP2 A DG 5 ? ? 109.49 119.60 -10.11 1.50 N 17 1 "O4'" A DG 5 ? ? "C1'" A DG 5 ? ? N9 A DG 5 ? ? 114.99 108.30 6.69 0.30 N 18 1 C6 A DG 5 ? ? N1 A DG 5 ? ? C2 A DG 5 ? ? 120.96 125.10 -4.14 0.60 N 19 1 C5 A DG 5 ? ? C6 A DG 5 ? ? N1 A DG 5 ? ? 115.25 111.50 3.75 0.50 N 20 1 "C3'" A DG 5 ? ? "O3'" A DG 5 ? ? P A DC 6 ? ? 132.59 119.70 12.89 1.20 Y 21 1 "O3'" A DG 5 ? ? P A DC 6 ? ? OP2 A DC 6 ? ? 117.84 110.50 7.34 1.10 Y 22 1 OP1 A DC 6 ? ? P A DC 6 ? ? OP2 A DC 6 ? ? 109.32 119.60 -10.28 1.50 N 23 1 "O4'" A DG 7 ? ? "C1'" A DG 7 ? ? N9 A DG 7 ? ? 113.64 108.30 5.34 0.30 N 24 1 "O3'" A DG 7 ? ? P A DC 8 ? ? "O5'" A DC 8 ? ? 91.29 104.00 -12.71 1.90 Y 25 1 "O3'" A DG 7 ? ? P A DC 8 ? ? OP2 A DC 8 ? ? 117.70 110.50 7.20 1.10 Y 26 1 "O4'" A DC 8 ? ? "C1'" A DC 8 ? ? N1 A DC 8 ? ? 114.06 108.30 5.76 0.30 N 27 1 N3 A DC 8 ? ? C4 A DC 8 ? ? C5 A DC 8 ? ? 119.49 121.90 -2.41 0.40 N 28 1 N3 A DC 9 ? ? C4 A DC 9 ? ? N4 A DC 9 ? ? 124.74 118.00 6.74 0.70 N 29 1 C5 A DC 9 ? ? C4 A DC 9 ? ? N4 A DC 9 ? ? 113.75 120.20 -6.45 0.70 N 30 1 "C3'" A DC 9 ? ? "O3'" A DC 9 ? ? P A DA 10 ? ? 149.45 119.70 29.75 1.20 Y 31 1 P A DA 10 ? ? "O5'" A DA 10 ? ? "C5'" A DA 10 ? ? 109.76 120.90 -11.14 1.60 N 32 1 N9 A DA 10 ? ? "C1'" A DA 10 ? ? "C2'" A DA 10 ? ? 100.50 112.60 -12.10 1.90 N 33 1 N1 A DA 10 ? ? C6 A DA 10 ? ? N6 A DA 10 ? ? 122.36 118.60 3.76 0.60 N 34 1 "C3'" A DA 10 ? ? "O3'" A DA 10 ? ? P A DC 11 ? ? 109.92 119.70 -9.78 1.20 Y 35 1 "O5'" A DC 11 ? ? P A DC 11 ? ? OP1 A DC 11 ? ? 119.95 110.70 9.25 1.20 N 36 1 "O4'" A DC 11 ? ? "C4'" A DC 11 ? ? "C3'" A DC 11 ? ? 101.92 104.50 -2.58 0.40 N 37 1 "O4'" A DC 11 ? ? "C1'" A DC 11 ? ? N1 A DC 11 ? ? 120.33 108.30 12.03 0.30 N 38 1 N3 A DC 11 ? ? C4 A DC 11 ? ? C5 A DC 11 ? ? 119.45 121.90 -2.45 0.40 N 39 1 "O4'" A DA 12 ? ? "C1'" A DA 12 ? ? N9 A DA 12 ? ? 111.72 108.30 3.42 0.30 N 40 1 C5 A DA 12 ? ? C6 A DA 12 ? ? N1 A DA 12 ? ? 114.61 117.70 -3.09 0.50 N 41 1 C2 B DT 13 ? ? N3 B DT 13 ? ? C4 B DT 13 ? ? 122.33 127.20 -4.87 0.60 N 42 1 N3 B DT 13 ? ? C4 B DT 13 ? ? C5 B DT 13 ? ? 118.94 115.20 3.74 0.60 N 43 1 "O4'" B DG 14 ? ? "C1'" B DG 14 ? ? N9 B DG 14 ? ? 114.72 108.30 6.42 0.30 N 44 1 C5 B DG 14 ? ? C6 B DG 14 ? ? N1 B DG 14 ? ? 114.90 111.50 3.40 0.50 N 45 1 "C3'" B DG 14 ? ? "O3'" B DG 14 ? ? P B DT 15 ? ? 111.05 119.70 -8.65 1.20 Y 46 1 "O5'" B DT 15 ? ? P B DT 15 ? ? OP1 B DT 15 ? ? 120.37 110.70 9.67 1.20 N 47 1 "O4'" B DT 15 ? ? "C1'" B DT 15 ? ? N1 B DT 15 ? ? 110.15 108.30 1.85 0.30 N 48 1 N1 B DT 15 ? ? C2 B DT 15 ? ? N3 B DT 15 ? ? 119.98 114.60 5.38 0.60 N 49 1 C2 B DT 15 ? ? N3 B DT 15 ? ? C4 B DT 15 ? ? 119.18 127.20 -8.02 0.60 N 50 1 N3 B DT 15 ? ? C4 B DT 15 ? ? C5 B DT 15 ? ? 121.08 115.20 5.88 0.60 N 51 1 C5 B DT 15 ? ? C4 B DT 15 ? ? O4 B DT 15 ? ? 120.13 124.90 -4.77 0.70 N 52 1 "C3'" B DT 15 ? ? "O3'" B DT 15 ? ? P B DG 16 ? ? 147.19 119.70 27.49 1.20 Y 53 1 "O3'" B DT 15 ? ? P B DG 16 ? ? OP2 B DG 16 ? ? 118.26 110.50 7.76 1.10 Y 54 1 OP1 B DG 16 ? ? P B DG 16 ? ? OP2 B DG 16 ? ? 109.36 119.60 -10.24 1.50 N 55 1 "C4'" B DG 16 ? ? "C3'" B DG 16 ? ? "O3'" B DG 16 ? ? 126.32 112.30 14.02 2.00 N 56 1 "C5'" B DG 17 ? ? "C4'" B DG 17 ? ? "O4'" B DG 17 ? ? 142.05 109.80 32.25 1.10 N 57 1 P B DC 18 ? ? "O5'" B DC 18 ? ? "C5'" B DC 18 ? ? 110.91 120.90 -9.99 1.60 N 58 1 "O4'" B DC 18 ? ? "C1'" B DC 18 ? ? N1 B DC 18 ? ? 110.47 108.30 2.17 0.30 N 59 1 "C1'" B DC 20 ? ? "O4'" B DC 20 ? ? "C4'" B DC 20 ? ? 116.44 110.30 6.14 0.70 N 60 1 "O4'" B DC 20 ? ? "C1'" B DC 20 ? ? N1 B DC 20 ? ? 120.78 108.30 12.48 0.30 N 61 1 "C3'" B DC 20 ? ? "O3'" B DC 20 ? ? P B DC 21 ? ? 135.62 119.70 15.92 1.20 Y 62 1 OP1 B DC 21 ? ? P B DC 21 ? ? OP2 B DC 21 ? ? 109.99 119.60 -9.61 1.50 N 63 1 "O4'" B DC 21 ? ? "C1'" B DC 21 ? ? N1 B DC 21 ? ? 117.07 108.30 8.77 0.30 N 64 1 "O4'" B DG 22 ? ? "C4'" B DG 22 ? ? "C3'" B DG 22 ? ? 101.15 104.50 -3.35 0.40 N 65 1 "O4'" B DG 22 ? ? "C1'" B DG 22 ? ? N9 B DG 22 ? ? 110.98 108.30 2.68 0.30 N 66 1 C5 B DG 22 ? ? C6 B DG 22 ? ? N1 B DG 22 ? ? 114.87 111.50 3.37 0.50 N 67 1 "O5'" B DG 23 ? ? P B DG 23 ? ? OP1 B DG 23 ? ? 121.84 110.70 11.14 1.20 N 68 1 P B DG 23 ? ? "O5'" B DG 23 ? ? "C5'" B DG 23 ? ? 132.35 120.90 11.45 1.60 N 69 1 "O4'" B DT 24 ? ? "C1'" B DT 24 ? ? N1 B DT 24 ? ? 111.87 108.30 3.57 0.30 N 70 1 C2 B DT 24 ? ? N3 B DT 24 ? ? C4 B DT 24 ? ? 122.81 127.20 -4.39 0.60 N 71 1 N3 B DT 24 ? ? C4 B DT 24 ? ? C5 B DT 24 ? ? 118.96 115.20 3.76 0.60 N # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id MG _pdbx_struct_special_symmetry.auth_seq_id 75 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id D _pdbx_struct_special_symmetry.label_comp_id MG _pdbx_struct_special_symmetry.label_seq_id . # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal DA OP3 O N N 1 DA P P N N 2 DA OP1 O N N 3 DA OP2 O N N 4 DA "O5'" O N N 5 DA "C5'" C N N 6 DA "C4'" C N R 7 DA "O4'" O N N 8 DA "C3'" C N S 9 DA "O3'" O N N 10 DA "C2'" C N N 11 DA "C1'" C N R 12 DA N9 N Y N 13 DA C8 C Y N 14 DA N7 N Y N 15 DA C5 C Y N 16 DA C6 C Y N 17 DA N6 N N N 18 DA N1 N Y N 19 DA C2 C Y N 20 DA N3 N Y N 21 DA C4 C Y N 22 DA HOP3 H N N 23 DA HOP2 H N N 24 DA "H5'" H N N 25 DA "H5''" H N N 26 DA "H4'" H N N 27 DA "H3'" H N N 28 DA "HO3'" H N N 29 DA "H2'" H N N 30 DA "H2''" H N N 31 DA "H1'" H N N 32 DA H8 H N N 33 DA H61 H N N 34 DA H62 H N N 35 DA H2 H N N 36 DC OP3 O N N 37 DC P P N N 38 DC OP1 O N N 39 DC OP2 O N N 40 DC "O5'" O N N 41 DC "C5'" C N N 42 DC "C4'" C N R 43 DC "O4'" O N N 44 DC "C3'" C N S 45 DC "O3'" O N N 46 DC "C2'" C N N 47 DC "C1'" C N R 48 DC N1 N N N 49 DC C2 C N N 50 DC O2 O N N 51 DC N3 N N N 52 DC C4 C N N 53 DC N4 N N N 54 DC C5 C N N 55 DC C6 C N N 56 DC HOP3 H N N 57 DC HOP2 H N N 58 DC "H5'" H N N 59 DC "H5''" H N N 60 DC "H4'" H N N 61 DC "H3'" H N N 62 DC "HO3'" H N N 63 DC "H2'" H N N 64 DC "H2''" H N N 65 DC "H1'" H N N 66 DC H41 H N N 67 DC H42 H N N 68 DC H5 H N N 69 DC H6 H N N 70 DG OP3 O N N 71 DG P P N N 72 DG OP1 O N N 73 DG OP2 O N N 74 DG "O5'" O N N 75 DG "C5'" C N N 76 DG "C4'" C N R 77 DG "O4'" O N N 78 DG "C3'" C N S 79 DG "O3'" O N N 80 DG "C2'" C N N 81 DG "C1'" C N R 82 DG N9 N Y N 83 DG C8 C Y N 84 DG N7 N Y N 85 DG C5 C Y N 86 DG C6 C N N 87 DG O6 O N N 88 DG N1 N N N 89 DG C2 C N N 90 DG N2 N N N 91 DG N3 N N N 92 DG C4 C Y N 93 DG HOP3 H N N 94 DG HOP2 H N N 95 DG "H5'" H N N 96 DG "H5''" H N N 97 DG "H4'" H N N 98 DG "H3'" H N N 99 DG "HO3'" H N N 100 DG "H2'" H N N 101 DG "H2''" H N N 102 DG "H1'" H N N 103 DG H8 H N N 104 DG H1 H N N 105 DG H21 H N N 106 DG H22 H N N 107 DT OP3 O N N 108 DT P P N N 109 DT OP1 O N N 110 DT OP2 O N N 111 DT "O5'" O N N 112 DT "C5'" C N N 113 DT "C4'" C N R 114 DT "O4'" O N N 115 DT "C3'" C N S 116 DT "O3'" O N N 117 DT "C2'" C N N 118 DT "C1'" C N R 119 DT N1 N N N 120 DT C2 C N N 121 DT O2 O N N 122 DT N3 N N N 123 DT C4 C N N 124 DT O4 O N N 125 DT C5 C N N 126 DT C7 C N N 127 DT C6 C N N 128 DT HOP3 H N N 129 DT HOP2 H N N 130 DT "H5'" H N N 131 DT "H5''" H N N 132 DT "H4'" H N N 133 DT "H3'" H N N 134 DT "HO3'" H N N 135 DT "H2'" H N N 136 DT "H2''" H N N 137 DT "H1'" H N N 138 DT H3 H N N 139 DT H71 H N N 140 DT H72 H N N 141 DT H73 H N N 142 DT H6 H N N 143 HOH O O N N 144 HOH H1 H N N 145 HOH H2 H N N 146 MG MG MG N N 147 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DA OP3 P sing N N 1 DA OP3 HOP3 sing N N 2 DA P OP1 doub N N 3 DA P OP2 sing N N 4 DA P "O5'" sing N N 5 DA OP2 HOP2 sing N N 6 DA "O5'" "C5'" sing N N 7 DA "C5'" "C4'" sing N N 8 DA "C5'" "H5'" sing N N 9 DA "C5'" "H5''" sing N N 10 DA "C4'" "O4'" sing N N 11 DA "C4'" "C3'" sing N N 12 DA "C4'" "H4'" sing N N 13 DA "O4'" "C1'" sing N N 14 DA "C3'" "O3'" sing N N 15 DA "C3'" "C2'" sing N N 16 DA "C3'" "H3'" sing N N 17 DA "O3'" "HO3'" sing N N 18 DA "C2'" "C1'" sing N N 19 DA "C2'" "H2'" sing N N 20 DA "C2'" "H2''" sing N N 21 DA "C1'" N9 sing N N 22 DA "C1'" "H1'" sing N N 23 DA N9 C8 sing Y N 24 DA N9 C4 sing Y N 25 DA C8 N7 doub Y N 26 DA C8 H8 sing N N 27 DA N7 C5 sing Y N 28 DA C5 C6 sing Y N 29 DA C5 C4 doub Y N 30 DA C6 N6 sing N N 31 DA C6 N1 doub Y N 32 DA N6 H61 sing N N 33 DA N6 H62 sing N N 34 DA N1 C2 sing Y N 35 DA C2 N3 doub Y N 36 DA C2 H2 sing N N 37 DA N3 C4 sing Y N 38 DC OP3 P sing N N 39 DC OP3 HOP3 sing N N 40 DC P OP1 doub N N 41 DC P OP2 sing N N 42 DC P "O5'" sing N N 43 DC OP2 HOP2 sing N N 44 DC "O5'" "C5'" sing N N 45 DC "C5'" "C4'" sing N N 46 DC "C5'" "H5'" sing N N 47 DC "C5'" "H5''" sing N N 48 DC "C4'" "O4'" sing N N 49 DC "C4'" "C3'" sing N N 50 DC "C4'" "H4'" sing N N 51 DC "O4'" "C1'" sing N N 52 DC "C3'" "O3'" sing N N 53 DC "C3'" "C2'" sing N N 54 DC "C3'" "H3'" sing N N 55 DC "O3'" "HO3'" sing N N 56 DC "C2'" "C1'" sing N N 57 DC "C2'" "H2'" sing N N 58 DC "C2'" "H2''" sing N N 59 DC "C1'" N1 sing N N 60 DC "C1'" "H1'" sing N N 61 DC N1 C2 sing N N 62 DC N1 C6 sing N N 63 DC C2 O2 doub N N 64 DC C2 N3 sing N N 65 DC N3 C4 doub N N 66 DC C4 N4 sing N N 67 DC C4 C5 sing N N 68 DC N4 H41 sing N N 69 DC N4 H42 sing N N 70 DC C5 C6 doub N N 71 DC C5 H5 sing N N 72 DC C6 H6 sing N N 73 DG OP3 P sing N N 74 DG OP3 HOP3 sing N N 75 DG P OP1 doub N N 76 DG P OP2 sing N N 77 DG P "O5'" sing N N 78 DG OP2 HOP2 sing N N 79 DG "O5'" "C5'" sing N N 80 DG "C5'" "C4'" sing N N 81 DG "C5'" "H5'" sing N N 82 DG "C5'" "H5''" sing N N 83 DG "C4'" "O4'" sing N N 84 DG "C4'" "C3'" sing N N 85 DG "C4'" "H4'" sing N N 86 DG "O4'" "C1'" sing N N 87 DG "C3'" "O3'" sing N N 88 DG "C3'" "C2'" sing N N 89 DG "C3'" "H3'" sing N N 90 DG "O3'" "HO3'" sing N N 91 DG "C2'" "C1'" sing N N 92 DG "C2'" "H2'" sing N N 93 DG "C2'" "H2''" sing N N 94 DG "C1'" N9 sing N N 95 DG "C1'" "H1'" sing N N 96 DG N9 C8 sing Y N 97 DG N9 C4 sing Y N 98 DG C8 N7 doub Y N 99 DG C8 H8 sing N N 100 DG N7 C5 sing Y N 101 DG C5 C6 sing N N 102 DG C5 C4 doub Y N 103 DG C6 O6 doub N N 104 DG C6 N1 sing N N 105 DG N1 C2 sing N N 106 DG N1 H1 sing N N 107 DG C2 N2 sing N N 108 DG C2 N3 doub N N 109 DG N2 H21 sing N N 110 DG N2 H22 sing N N 111 DG N3 C4 sing N N 112 DT OP3 P sing N N 113 DT OP3 HOP3 sing N N 114 DT P OP1 doub N N 115 DT P OP2 sing N N 116 DT P "O5'" sing N N 117 DT OP2 HOP2 sing N N 118 DT "O5'" "C5'" sing N N 119 DT "C5'" "C4'" sing N N 120 DT "C5'" "H5'" sing N N 121 DT "C5'" "H5''" sing N N 122 DT "C4'" "O4'" sing N N 123 DT "C4'" "C3'" sing N N 124 DT "C4'" "H4'" sing N N 125 DT "O4'" "C1'" sing N N 126 DT "C3'" "O3'" sing N N 127 DT "C3'" "C2'" sing N N 128 DT "C3'" "H3'" sing N N 129 DT "O3'" "HO3'" sing N N 130 DT "C2'" "C1'" sing N N 131 DT "C2'" "H2'" sing N N 132 DT "C2'" "H2''" sing N N 133 DT "C1'" N1 sing N N 134 DT "C1'" "H1'" sing N N 135 DT N1 C2 sing N N 136 DT N1 C6 sing N N 137 DT C2 O2 doub N N 138 DT C2 N3 sing N N 139 DT N3 C4 sing N N 140 DT N3 H3 sing N N 141 DT C4 O4 doub N N 142 DT C4 C5 sing N N 143 DT C5 C7 sing N N 144 DT C5 C6 doub N N 145 DT C7 H71 sing N N 146 DT C7 H72 sing N N 147 DT C7 H73 sing N N 148 DT C6 H6 sing N N 149 HOH O H1 sing N N 150 HOH O H2 sing N N 151 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1QP5 'double helix' 1QP5 'b-form double helix' 1QP5 'mismatched base pair' 1QP5 'triple helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DA 1 1_555 B DG 11 1_555 0.655 1.498 -0.498 -3.336 -6.297 -16.178 1 A_DA1:DG23_B A 1 ? B 23 ? 8 ? 1 A DC 2 1_555 B DG 10 1_555 -1.156 4.460 -1.006 -18.534 -27.855 -102.516 2 A_DC2:DG22_B A 2 ? B 22 ? ? ? 1 A DG 4 1_555 B DC 9 1_555 0.654 0.646 1.065 -9.255 -19.540 21.284 3 A_DG4:DC21_B A 4 ? B 21 ? ? 1 1 A DG 5 1_555 B DC 8 1_555 -1.480 -0.038 0.910 -1.540 -27.184 6.864 4 A_DG5:DC20_B A 5 ? B 20 ? ? 1 1 A DC 6 1_555 B DG 7 1_555 -1.476 0.358 0.013 6.614 -17.665 1.276 5 A_DC6:DG19_B A 6 ? B 19 ? ? 1 1 A DG 7 1_555 B DC 6 1_555 0.626 0.812 1.613 0.584 -24.890 14.113 6 A_DG7:DC18_B A 7 ? B 18 ? ? 1 1 A DC 8 1_555 B DG 4 1_555 0.075 0.782 -1.575 -6.958 -17.476 -28.763 7 A_DC8:DG16_B A 8 ? B 16 ? ? ? 1 A DC 9 1_555 B DT 3 1_555 0.789 -1.873 -0.787 -4.766 -24.836 3.174 8 A_DC9:DT15_B A 9 ? B 15 ? 18 1 1 A DA 10 1_555 B DG 2 1_555 0.152 1.098 -1.647 -1.937 -17.769 -12.665 9 A_DA10:DG14_B A 10 ? B 14 ? 8 ? 1 A DC 11 1_555 B DT 1 1_555 0.552 0.964 -1.111 -21.663 -15.214 -52.646 10 A_DC11:DT13_B A 11 ? B 13 ? ? ? # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DA 1 1_555 B DG 11 1_555 A DC 2 1_555 B DG 10 1_555 0.596 -1.097 2.511 -0.675 -11.236 74.798 -0.629 -0.502 2.626 -9.200 0.553 75.518 1 AA_DA1DC2:DG22DG23_BB A 1 ? B 23 ? A 2 ? B 22 ? 1 A DC 2 1_555 B DG 10 1_555 A DG 4 1_555 B DC 9 1_555 0.632 3.051 5.869 3.859 -0.086 17.073 10.123 2.191 5.850 -0.285 -12.786 17.501 2 AA_DC2DG4:DC21DG22_BB A 2 ? B 22 ? A 4 ? B 21 ? 1 A DG 4 1_555 B DC 9 1_555 A DG 5 1_555 B DC 8 1_555 -1.720 0.372 2.781 -9.136 10.135 21.670 -1.982 1.343 3.116 24.121 21.743 25.564 3 AA_DG4DG5:DC20DC21_BB A 4 ? B 21 ? A 5 ? B 20 ? 1 A DG 5 1_555 B DC 8 1_555 A DC 6 1_555 B DG 7 1_555 -0.400 0.614 3.336 4.590 -10.623 37.195 2.201 1.154 2.988 -16.181 -6.992 38.892 4 AA_DG5DC6:DG19DC20_BB A 5 ? B 20 ? A 6 ? B 19 ? 1 A DC 6 1_555 B DG 7 1_555 A DG 7 1_555 B DC 6 1_555 0.973 1.453 3.937 -4.003 6.698 46.416 1.147 -1.621 4.005 8.428 5.037 47.032 5 AA_DC6DG7:DC18DG19_BB A 6 ? B 19 ? A 7 ? B 18 ? 1 A DG 7 1_555 B DC 6 1_555 A DC 8 1_555 B DG 4 1_555 -1.038 -0.116 5.328 -7.483 -3.195 49.332 0.246 0.331 5.418 -3.797 8.896 49.957 6 AA_DG7DC8:DG16DC18_BB A 7 ? B 18 ? A 8 ? B 16 ? 1 A DC 8 1_555 B DG 4 1_555 A DC 9 1_555 B DT 3 1_555 1.870 0.671 3.506 1.229 -3.605 37.473 1.540 -2.726 3.486 -5.593 -1.907 37.659 7 AA_DC8DC9:DT15DG16_BB A 8 ? B 16 ? A 9 ? B 15 ? 1 A DC 9 1_555 B DT 3 1_555 A DA 10 1_555 B DG 2 1_555 -1.503 0.675 3.315 0.023 2.363 35.708 0.751 2.450 3.351 3.848 -0.038 35.784 8 AA_DC9DA10:DG14DT15_BB A 9 ? B 15 ? A 10 ? B 14 ? 1 A DA 10 1_555 B DG 2 1_555 A DC 11 1_555 B DT 1 1_555 -1.246 -0.894 3.736 -7.104 -6.357 31.509 -0.262 0.730 4.014 -11.384 12.722 32.884 9 AA_DA10DC11:DT13DG14_BB A 10 ? B 14 ? A 11 ? B 13 ? # _atom_sites.entry_id 1QP5 _atom_sites.fract_transf_matrix[1][1] 0.015175 _atom_sites.fract_transf_matrix[1][2] 0.008761 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.017522 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.021231 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C MG N O P # loop_