data_1QSK # _entry.id 1QSK # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.355 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1QSK pdb_00001qsk 10.2210/pdb1qsk/pdb RCSB RCSB009214 ? ? WWPDB D_1000009214 ? ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 1AJT _pdbx_database_related.details 'FIVE-NUCLEOTIDE RNA BULGE' _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1QSK _pdbx_database_status.recvd_initial_deposition_date 1999-06-22 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_mr REL _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Dornberger, U.' 1 'Hillisch, A.' 2 'Gollmick, F.' 3 'Fritzsche, H.' 4 'Diekmann, S.' 5 # _citation.id primary _citation.title 'Solution structure of a five-adenine bulge loop within a DNA duplex.' _citation.journal_abbrev Biochemistry _citation.journal_volume 38 _citation.page_first 12860 _citation.page_last 12868 _citation.year 1999 _citation.journal_id_ASTM BICHAW _citation.country US _citation.journal_id_ISSN 0006-2960 _citation.journal_id_CSD 0033 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 10504256 _citation.pdbx_database_id_DOI 10.1021/bi9906874 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Dornberger, U.' 1 ? primary 'Hillisch, A.' 2 ? primary 'Gollmick, F.A.' 3 ? primary 'Fritzsche, H.' 4 ? primary 'Diekmann, S.' 5 ? # _cell.entry_id 1QSK _cell.length_a 1.000 _cell.length_b 1.000 _cell.length_c 1.000 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1QSK _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "5'-D(GP*CP*AP*TP*CP*GP*AP*AP*AP*AP*AP*GP*CP*TP*AP*CP*GP)-3'" 5229.426 1 ? ? ? ? 2 polymer syn "5'-D(CP*GP*TP*AP*GP*CP*CP*GP*AP*TP*GP*CP)-3'" 3663.392 1 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no no '(DG)(DC)(DA)(DT)(DC)(DG)(DA)(DA)(DA)(DA)(DA)(DG)(DC)(DT)(DA)(DC)(DG)' GCATCGAAAAAGCTACG A ? 2 polydeoxyribonucleotide no no '(DC)(DG)(DT)(DA)(DG)(DC)(DC)(DG)(DA)(DT)(DG)(DC)' CGTAGCCGATGC B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DG n 1 2 DC n 1 3 DA n 1 4 DT n 1 5 DC n 1 6 DG n 1 7 DA n 1 8 DA n 1 9 DA n 1 10 DA n 1 11 DA n 1 12 DG n 1 13 DC n 1 14 DT n 1 15 DA n 1 16 DC n 1 17 DG n 2 1 DC n 2 2 DG n 2 3 DT n 2 4 DA n 2 5 DG n 2 6 DC n 2 7 DC n 2 8 DG n 2 9 DA n 2 10 DT n 2 11 DG n 2 12 DC n # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 1 1 sample ? ? ? ? ? 'ARTIFICIAL SEQUENCE' 2 1 sample ? ? ? ? ? 'ARTIFICIAL SEQUENCE' # loop_ _struct_ref.id _struct_ref.entity_id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 1 PDB 1QSK 1QSK ? ? ? 2 2 PDB 1QSK 1QSK ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1QSK A 1 ? 17 ? 1QSK 1 ? 17 ? 1 17 2 2 1QSK B 1 ? 12 ? 1QSK 18 ? 29 ? 18 29 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.solution_id 1 1 '2D NOESY' 1 2 1 DQF-COSY 1 3 1 E-COSY 1 4 1 P-COSY 1 5 2 '2D NOESY' 2 # loop_ _pdbx_nmr_exptl_sample_conditions.conditions_id _pdbx_nmr_exptl_sample_conditions.temperature _pdbx_nmr_exptl_sample_conditions.pressure _pdbx_nmr_exptl_sample_conditions.pH _pdbx_nmr_exptl_sample_conditions.ionic_strength _pdbx_nmr_exptl_sample_conditions.pressure_units _pdbx_nmr_exptl_sample_conditions.temperature_units 1 300 AMBIENT 7.0 '100mM NACL' ? K 2 278 AMBIENT 7.0 '100mM NACL' ? K # loop_ _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solvent_system 1 '2.8MM IN DUPLEX; 10MM PHOSPHATE BUFFER, 100MM NACL, 0.05MM EDTA, 100% D2O' ? 2 '2.8MM IN DUPLEX; 10MM PHOSPHATE BUFFER, 100MM NACL, 0.05MM EDTA, 90% H2O,10% D2O' ? # loop_ _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.type 1 UNITYPLUS Varian 600 ? 2 UNITY Varian 500 ? # _pdbx_nmr_refine.entry_id 1QSK _pdbx_nmr_refine.method 'TORSION ANGLE DYNAMICS AND RESTRAINED ENERGY MINIMIZATION' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_details.entry_id 1QSK _pdbx_nmr_details.text 'THIS STRUCTURE WAS DETERMINED USING STANDARD 2D HOMONUCLEAR TECHNIQUES.' # _pdbx_nmr_ensemble.entry_id 1QSK _pdbx_nmr_ensemble.conformers_calculated_total_number 600 _pdbx_nmr_ensemble.conformers_submitted_total_number 15 _pdbx_nmr_ensemble.conformer_selection_criteria 'target function' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 1QSK _pdbx_nmr_representative.conformer_id 6 _pdbx_nmr_representative.selection_criteria 'fewest violations' # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal collection VNMR 4.3 VARIAN 1 processing NMRPipe 1.7 DELAGLIO 2 'iterative matrix relaxation' MARDIGRAS 3.2 'BORGIAS & JAMES' 3 'structure solution' DYANA 1.5 GUNTERT 4 'structure solution' Amber 5.0 pearlman 5 refinement Amber 5.0 pearlman 6 # _exptl.entry_id 1QSK _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _struct.entry_id 1QSK _struct.title 'NMR-DERIVED SOLUTION STRUCTURE OF A FIVE-ADENINE BULGE LOOP WITHIN A DNA DUPLEX' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1QSK _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'DNA BULGE, FIVE-ADENINE BULGE LOOP, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_biol.id 1 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A DC 2 N3 ? ? ? 1_555 B DG 11 N1 ? ? A DC 2 B DG 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DC 2 N4 ? ? ? 1_555 B DG 11 O6 ? ? A DC 2 B DG 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 2 O2 ? ? ? 1_555 B DG 11 N2 ? ? A DC 2 B DG 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DA 3 N1 ? ? ? 1_555 B DT 10 N3 ? ? A DA 3 B DT 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DA 3 N6 ? ? ? 1_555 B DT 10 O4 ? ? A DA 3 B DT 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DT 4 N3 ? ? ? 1_555 B DA 9 N1 ? ? A DT 4 B DA 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DT 4 O4 ? ? ? 1_555 B DA 9 N6 ? ? A DT 4 B DA 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DC 5 N3 ? ? ? 1_555 B DG 8 N1 ? ? A DC 5 B DG 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DC 5 N4 ? ? ? 1_555 B DG 8 O6 ? ? A DC 5 B DG 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DC 5 O2 ? ? ? 1_555 B DG 8 N2 ? ? A DC 5 B DG 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DG 6 N1 ? ? ? 1_555 B DC 7 N3 ? ? A DG 6 B DC 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DG 6 N2 ? ? ? 1_555 B DC 7 O2 ? ? A DG 6 B DC 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DG 6 O6 ? ? ? 1_555 B DC 7 N4 ? ? A DG 6 B DC 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DG 12 N1 ? ? ? 1_555 B DC 6 N3 ? ? A DG 12 B DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DG 12 N2 ? ? ? 1_555 B DC 6 O2 ? ? A DG 12 B DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DG 12 O6 ? ? ? 1_555 B DC 6 N4 ? ? A DG 12 B DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DC 13 N3 ? ? ? 1_555 B DG 5 N1 ? ? A DC 13 B DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DC 13 N4 ? ? ? 1_555 B DG 5 O6 ? ? A DC 13 B DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DC 13 O2 ? ? ? 1_555 B DG 5 N2 ? ? A DC 13 B DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DT 14 N3 ? ? ? 1_555 B DA 4 N1 ? ? A DT 14 B DA 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DT 14 O4 ? ? ? 1_555 B DA 4 N6 ? ? A DT 14 B DA 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DA 15 N1 ? ? ? 1_555 B DT 3 N3 ? ? A DA 15 B DT 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DA 15 N6 ? ? ? 1_555 B DT 3 O4 ? ? A DA 15 B DT 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DC 16 N3 ? ? ? 1_555 B DG 2 N1 ? ? A DC 16 B DG 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DC 16 N4 ? ? ? 1_555 B DG 2 O6 ? ? A DC 16 B DG 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DC 16 O2 ? ? ? 1_555 B DG 2 N2 ? ? A DC 16 B DG 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # _database_PDB_matrix.entry_id 1QSK _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1QSK _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DG 1 1 1 DG G A . n A 1 2 DC 2 2 2 DC C A . n A 1 3 DA 3 3 3 DA A A . n A 1 4 DT 4 4 4 DT T A . n A 1 5 DC 5 5 5 DC C A . n A 1 6 DG 6 6 6 DG G A . n A 1 7 DA 7 7 7 DA A A . n A 1 8 DA 8 8 8 DA A A . n A 1 9 DA 9 9 9 DA A A . n A 1 10 DA 10 10 10 DA A A . n A 1 11 DA 11 11 11 DA A A . n A 1 12 DG 12 12 12 DG G A . n A 1 13 DC 13 13 13 DC C A . n A 1 14 DT 14 14 14 DT T A . n A 1 15 DA 15 15 15 DA A A . n A 1 16 DC 16 16 16 DC C A . n A 1 17 DG 17 17 17 DG G A . n B 2 1 DC 1 18 18 DC C B . n B 2 2 DG 2 19 19 DG G B . n B 2 3 DT 3 20 20 DT T B . n B 2 4 DA 4 21 21 DA A B . n B 2 5 DG 5 22 22 DG G B . n B 2 6 DC 6 23 23 DC C B . n B 2 7 DC 7 24 24 DC C B . n B 2 8 DG 8 25 25 DG G B . n B 2 9 DA 9 26 26 DA A B . n B 2 10 DT 10 27 27 DT T B . n B 2 11 DG 11 28 28 DG G B . n B 2 12 DC 12 29 29 DC C B . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1999-11-05 2 'Structure model' 1 1 2008-04-27 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-03-02 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_nmr_software 3 4 'Structure model' pdbx_struct_assembly 4 4 'Structure model' pdbx_struct_oper_list # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_nmr_software.name' # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A DC 2 ? ? "C1'" A DC 2 ? ? N1 A DC 2 ? ? 110.40 108.30 2.10 0.30 N 2 1 "O4'" A DA 9 ? ? "C1'" A DA 9 ? ? N9 A DA 9 ? ? 111.39 108.30 3.09 0.30 N 3 1 "O4'" A DA 10 ? ? "C1'" A DA 10 ? ? N9 A DA 10 ? ? 110.43 108.30 2.13 0.30 N 4 1 "O4'" A DG 12 ? ? "C1'" A DG 12 ? ? N9 A DG 12 ? ? 111.94 108.30 3.64 0.30 N 5 1 "O4'" B DC 18 ? ? "C1'" B DC 18 ? ? N1 B DC 18 ? ? 110.52 108.30 2.22 0.30 N 6 1 "O4'" B DA 21 ? ? "C1'" B DA 21 ? ? N9 B DA 21 ? ? 110.58 108.30 2.28 0.30 N 7 1 "O4'" B DC 23 ? ? "C1'" B DC 23 ? ? N1 B DC 23 ? ? 110.81 108.30 2.51 0.30 N 8 1 "O4'" B DT 27 ? ? "C1'" B DT 27 ? ? N1 B DT 27 ? ? 110.85 108.30 2.55 0.30 N 9 1 "O4'" B DC 29 ? ? "C1'" B DC 29 ? ? N1 B DC 29 ? ? 111.26 108.30 2.96 0.30 N 10 2 "O4'" A DC 2 ? ? "C1'" A DC 2 ? ? N1 A DC 2 ? ? 110.29 108.30 1.99 0.30 N 11 2 "O4'" A DT 4 ? ? "C1'" A DT 4 ? ? N1 A DT 4 ? ? 110.18 108.30 1.88 0.30 N 12 2 "O4'" A DA 9 ? ? "C1'" A DA 9 ? ? N9 A DA 9 ? ? 110.49 108.30 2.19 0.30 N 13 2 "O4'" A DG 12 ? ? "C1'" A DG 12 ? ? N9 A DG 12 ? ? 111.78 108.30 3.48 0.30 N 14 2 "O4'" B DC 18 ? ? "C1'" B DC 18 ? ? N1 B DC 18 ? ? 111.03 108.30 2.73 0.30 N 15 2 "O4'" B DT 20 ? ? "C1'" B DT 20 ? ? N1 B DT 20 ? ? 110.22 108.30 1.92 0.30 N 16 2 "O4'" B DA 21 ? ? "C1'" B DA 21 ? ? N9 B DA 21 ? ? 110.16 108.30 1.86 0.30 N 17 2 "O4'" B DC 23 ? ? "C1'" B DC 23 ? ? N1 B DC 23 ? ? 110.58 108.30 2.28 0.30 N 18 2 "O4'" B DT 27 ? ? "C1'" B DT 27 ? ? N1 B DT 27 ? ? 111.41 108.30 3.11 0.30 N 19 2 "O4'" B DC 29 ? ? "C1'" B DC 29 ? ? N1 B DC 29 ? ? 111.70 108.30 3.40 0.30 N 20 3 "O4'" A DC 2 ? ? "C1'" A DC 2 ? ? N1 A DC 2 ? ? 110.23 108.30 1.93 0.30 N 21 3 "O4'" A DT 4 ? ? "C1'" A DT 4 ? ? N1 A DT 4 ? ? 110.48 108.30 2.18 0.30 N 22 3 "O4'" A DG 12 ? ? "C1'" A DG 12 ? ? N9 A DG 12 ? ? 112.18 108.30 3.88 0.30 N 23 3 "O4'" B DC 18 ? ? "C1'" B DC 18 ? ? N1 B DC 18 ? ? 111.59 108.30 3.29 0.30 N 24 3 "O4'" B DA 21 ? ? "C1'" B DA 21 ? ? N9 B DA 21 ? ? 110.28 108.30 1.98 0.30 N 25 3 "O4'" B DC 23 ? ? "C1'" B DC 23 ? ? N1 B DC 23 ? ? 111.15 108.30 2.85 0.30 N 26 3 "O4'" B DC 24 ? ? "C1'" B DC 24 ? ? N1 B DC 24 ? ? 110.99 108.30 2.69 0.30 N 27 3 "O4'" B DT 27 ? ? "C1'" B DT 27 ? ? N1 B DT 27 ? ? 110.44 108.30 2.14 0.30 N 28 3 "O4'" B DC 29 ? ? "C1'" B DC 29 ? ? N1 B DC 29 ? ? 111.41 108.30 3.11 0.30 N 29 4 "O4'" A DC 2 ? ? "C1'" A DC 2 ? ? N1 A DC 2 ? ? 110.46 108.30 2.16 0.30 N 30 4 "O4'" A DT 4 ? ? "C1'" A DT 4 ? ? N1 A DT 4 ? ? 110.27 108.30 1.97 0.30 N 31 4 "O4'" A DA 9 ? ? "C1'" A DA 9 ? ? N9 A DA 9 ? ? 111.12 108.30 2.82 0.30 N 32 4 "O4'" A DA 10 ? ? "C1'" A DA 10 ? ? N9 A DA 10 ? ? 110.81 108.30 2.51 0.30 N 33 4 "O4'" A DG 12 ? ? "C1'" A DG 12 ? ? N9 A DG 12 ? ? 112.50 108.30 4.20 0.30 N 34 4 "O4'" B DC 18 ? ? "C1'" B DC 18 ? ? N1 B DC 18 ? ? 112.02 108.30 3.72 0.30 N 35 4 "O4'" B DA 21 ? ? "C1'" B DA 21 ? ? N9 B DA 21 ? ? 110.36 108.30 2.06 0.30 N 36 4 "O4'" B DC 23 ? ? "C1'" B DC 23 ? ? N1 B DC 23 ? ? 110.33 108.30 2.03 0.30 N 37 4 "O4'" B DT 27 ? ? "C1'" B DT 27 ? ? N1 B DT 27 ? ? 110.73 108.30 2.43 0.30 N 38 4 "O4'" B DC 29 ? ? "C1'" B DC 29 ? ? N1 B DC 29 ? ? 111.50 108.30 3.20 0.30 N 39 5 "O4'" A DC 2 ? ? "C1'" A DC 2 ? ? N1 A DC 2 ? ? 110.19 108.30 1.89 0.30 N 40 5 "O4'" A DA 9 ? ? "C1'" A DA 9 ? ? N9 A DA 9 ? ? 110.74 108.30 2.44 0.30 N 41 5 "O4'" A DG 12 ? ? "C1'" A DG 12 ? ? N9 A DG 12 ? ? 112.39 108.30 4.09 0.30 N 42 5 "O4'" A DC 16 ? ? "C1'" A DC 16 ? ? N1 A DC 16 ? ? 110.33 108.30 2.03 0.30 N 43 5 "O4'" B DC 23 ? ? "C1'" B DC 23 ? ? N1 B DC 23 ? ? 110.13 108.30 1.83 0.30 N 44 5 "O4'" B DT 27 ? ? "C1'" B DT 27 ? ? N1 B DT 27 ? ? 110.63 108.30 2.33 0.30 N 45 5 "O4'" B DC 29 ? ? "C1'" B DC 29 ? ? N1 B DC 29 ? ? 111.72 108.30 3.42 0.30 N 46 6 "O4'" A DC 2 ? ? "C1'" A DC 2 ? ? N1 A DC 2 ? ? 110.35 108.30 2.05 0.30 N 47 6 "O4'" A DT 4 ? ? "C1'" A DT 4 ? ? N1 A DT 4 ? ? 110.25 108.30 1.95 0.30 N 48 6 "O4'" A DA 9 ? ? "C1'" A DA 9 ? ? N9 A DA 9 ? ? 111.70 108.30 3.40 0.30 N 49 6 "O4'" A DA 10 ? ? "C1'" A DA 10 ? ? N9 A DA 10 ? ? 110.60 108.30 2.30 0.30 N 50 6 "O4'" A DG 12 ? ? "C1'" A DG 12 ? ? N9 A DG 12 ? ? 113.30 108.30 5.00 0.30 N 51 6 "O4'" A DC 16 ? ? "C1'" A DC 16 ? ? N1 A DC 16 ? ? 110.63 108.30 2.33 0.30 N 52 6 "O4'" B DC 23 ? ? "C1'" B DC 23 ? ? N1 B DC 23 ? ? 110.75 108.30 2.45 0.30 N 53 6 "O4'" B DT 27 ? ? "C1'" B DT 27 ? ? N1 B DT 27 ? ? 110.88 108.30 2.58 0.30 N 54 6 "O4'" B DC 29 ? ? "C1'" B DC 29 ? ? N1 B DC 29 ? ? 111.98 108.30 3.68 0.30 N 55 7 "O4'" A DA 9 ? ? "C1'" A DA 9 ? ? N9 A DA 9 ? ? 110.69 108.30 2.39 0.30 N 56 7 "O4'" A DG 12 ? ? "C1'" A DG 12 ? ? N9 A DG 12 ? ? 111.78 108.30 3.48 0.30 N 57 7 "O4'" B DC 18 ? ? "C1'" B DC 18 ? ? N1 B DC 18 ? ? 110.58 108.30 2.28 0.30 N 58 7 "O4'" B DA 21 ? ? "C1'" B DA 21 ? ? N9 B DA 21 ? ? 110.36 108.30 2.06 0.30 N 59 7 "O4'" B DT 27 ? ? "C1'" B DT 27 ? ? N1 B DT 27 ? ? 111.04 108.30 2.74 0.30 N 60 7 "O4'" B DC 29 ? ? "C1'" B DC 29 ? ? N1 B DC 29 ? ? 111.91 108.30 3.61 0.30 N 61 8 "O4'" A DC 2 ? ? "C1'" A DC 2 ? ? N1 A DC 2 ? ? 110.35 108.30 2.05 0.30 N 62 8 "O4'" A DA 9 ? ? "C1'" A DA 9 ? ? N9 A DA 9 ? ? 110.35 108.30 2.05 0.30 N 63 8 "O4'" A DG 12 ? ? "C1'" A DG 12 ? ? N9 A DG 12 ? ? 111.66 108.30 3.36 0.30 N 64 8 "O4'" B DA 21 ? ? "C1'" B DA 21 ? ? N9 B DA 21 ? ? 110.24 108.30 1.94 0.30 N 65 8 "O4'" B DC 23 ? ? "C1'" B DC 23 ? ? N1 B DC 23 ? ? 110.49 108.30 2.19 0.30 N 66 8 "O4'" B DC 24 ? ? "C1'" B DC 24 ? ? N1 B DC 24 ? ? 110.81 108.30 2.51 0.30 N 67 8 "O4'" B DT 27 ? ? "C1'" B DT 27 ? ? N1 B DT 27 ? ? 110.80 108.30 2.50 0.30 N 68 8 "O4'" B DC 29 ? ? "C1'" B DC 29 ? ? N1 B DC 29 ? ? 111.72 108.30 3.42 0.30 N 69 9 "O4'" A DC 2 ? ? "C1'" A DC 2 ? ? N1 A DC 2 ? ? 110.75 108.30 2.45 0.30 N 70 9 "O4'" A DT 4 ? ? "C1'" A DT 4 ? ? N1 A DT 4 ? ? 110.22 108.30 1.92 0.30 N 71 9 "O4'" A DA 9 ? ? "C1'" A DA 9 ? ? N9 A DA 9 ? ? 110.90 108.30 2.60 0.30 N 72 9 "O4'" A DA 10 ? ? "C1'" A DA 10 ? ? N9 A DA 10 ? ? 110.19 108.30 1.89 0.30 N 73 9 "O4'" A DG 12 ? ? "C1'" A DG 12 ? ? N9 A DG 12 ? ? 112.25 108.30 3.95 0.30 N 74 9 "O4'" A DC 16 ? ? "C1'" A DC 16 ? ? N1 A DC 16 ? ? 110.26 108.30 1.96 0.30 N 75 9 "O4'" B DC 23 ? ? "C1'" B DC 23 ? ? N1 B DC 23 ? ? 110.50 108.30 2.20 0.30 N 76 9 "O4'" B DT 27 ? ? "C1'" B DT 27 ? ? N1 B DT 27 ? ? 111.14 108.30 2.84 0.30 N 77 9 "O4'" B DC 29 ? ? "C1'" B DC 29 ? ? N1 B DC 29 ? ? 110.42 108.30 2.12 0.30 N 78 10 "O4'" A DC 2 ? ? "C1'" A DC 2 ? ? N1 A DC 2 ? ? 110.44 108.30 2.14 0.30 N 79 10 "O4'" A DT 4 ? ? "C1'" A DT 4 ? ? N1 A DT 4 ? ? 110.32 108.30 2.02 0.30 N 80 10 "O4'" A DA 9 ? ? "C1'" A DA 9 ? ? N9 A DA 9 ? ? 110.92 108.30 2.62 0.30 N 81 10 "O4'" A DA 10 ? ? "C1'" A DA 10 ? ? N9 A DA 10 ? ? 110.29 108.30 1.99 0.30 N 82 10 "O4'" A DG 12 ? ? "C1'" A DG 12 ? ? N9 A DG 12 ? ? 112.37 108.30 4.07 0.30 N 83 10 "O4'" A DC 16 ? ? "C1'" A DC 16 ? ? N1 A DC 16 ? ? 110.62 108.30 2.32 0.30 N 84 10 "O4'" B DC 23 ? ? "C1'" B DC 23 ? ? N1 B DC 23 ? ? 110.13 108.30 1.83 0.30 N 85 10 "O4'" B DT 27 ? ? "C1'" B DT 27 ? ? N1 B DT 27 ? ? 110.69 108.30 2.39 0.30 N 86 10 "O4'" B DC 29 ? ? "C1'" B DC 29 ? ? N1 B DC 29 ? ? 111.91 108.30 3.61 0.30 N 87 11 "O4'" A DC 2 ? ? "C1'" A DC 2 ? ? N1 A DC 2 ? ? 110.84 108.30 2.54 0.30 N 88 11 "O4'" A DA 9 ? ? "C1'" A DA 9 ? ? N9 A DA 9 ? ? 111.58 108.30 3.28 0.30 N 89 11 "O4'" A DA 10 ? ? "C1'" A DA 10 ? ? N9 A DA 10 ? ? 110.50 108.30 2.20 0.30 N 90 11 "O4'" A DG 12 ? ? "C1'" A DG 12 ? ? N9 A DG 12 ? ? 112.53 108.30 4.23 0.30 N 91 11 "O4'" B DC 18 ? ? "C1'" B DC 18 ? ? N1 B DC 18 ? ? 111.26 108.30 2.96 0.30 N 92 11 "O4'" B DC 23 ? ? "C1'" B DC 23 ? ? N1 B DC 23 ? ? 111.22 108.30 2.92 0.30 N 93 11 "O4'" B DT 27 ? ? "C1'" B DT 27 ? ? N1 B DT 27 ? ? 110.74 108.30 2.44 0.30 N 94 11 "O4'" B DC 29 ? ? "C1'" B DC 29 ? ? N1 B DC 29 ? ? 110.41 108.30 2.11 0.30 N 95 12 "O4'" A DC 2 ? ? "C1'" A DC 2 ? ? N1 A DC 2 ? ? 110.25 108.30 1.95 0.30 N 96 12 "O4'" A DT 4 ? ? "C1'" A DT 4 ? ? N1 A DT 4 ? ? 110.30 108.30 2.00 0.30 N 97 12 "O4'" A DA 9 ? ? "C1'" A DA 9 ? ? N9 A DA 9 ? ? 110.68 108.30 2.38 0.30 N 98 12 "O4'" A DG 12 ? ? "C1'" A DG 12 ? ? N9 A DG 12 ? ? 112.18 108.30 3.88 0.30 N 99 12 "O4'" B DC 18 ? ? "C1'" B DC 18 ? ? N1 B DC 18 ? ? 110.68 108.30 2.38 0.30 N 100 12 "O4'" B DC 23 ? ? "C1'" B DC 23 ? ? N1 B DC 23 ? ? 111.96 108.30 3.66 0.30 N 101 12 "O4'" B DT 27 ? ? "C1'" B DT 27 ? ? N1 B DT 27 ? ? 110.82 108.30 2.52 0.30 N 102 12 "O4'" B DC 29 ? ? "C1'" B DC 29 ? ? N1 B DC 29 ? ? 111.85 108.30 3.55 0.30 N 103 13 "O4'" A DC 2 ? ? "C1'" A DC 2 ? ? N1 A DC 2 ? ? 110.40 108.30 2.10 0.30 N 104 13 "O4'" A DT 4 ? ? "C1'" A DT 4 ? ? N1 A DT 4 ? ? 110.17 108.30 1.87 0.30 N 105 13 "O4'" A DG 12 ? ? "C1'" A DG 12 ? ? N9 A DG 12 ? ? 111.40 108.30 3.10 0.30 N 106 13 "O4'" B DA 21 ? ? "C1'" B DA 21 ? ? N9 B DA 21 ? ? 110.81 108.30 2.51 0.30 N 107 13 "O4'" B DC 23 ? ? "C1'" B DC 23 ? ? N1 B DC 23 ? ? 111.44 108.30 3.14 0.30 N 108 13 "O4'" B DT 27 ? ? "C1'" B DT 27 ? ? N1 B DT 27 ? ? 110.93 108.30 2.63 0.30 N 109 13 "O4'" B DC 29 ? ? "C1'" B DC 29 ? ? N1 B DC 29 ? ? 111.87 108.30 3.57 0.30 N 110 14 "O4'" A DC 2 ? ? "C1'" A DC 2 ? ? N1 A DC 2 ? ? 110.59 108.30 2.29 0.30 N 111 14 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 110.21 108.30 1.91 0.30 N 112 14 "O4'" A DA 9 ? ? "C1'" A DA 9 ? ? N9 A DA 9 ? ? 111.19 108.30 2.89 0.30 N 113 14 "O4'" A DA 10 ? ? "C1'" A DA 10 ? ? N9 A DA 10 ? ? 110.29 108.30 1.99 0.30 N 114 14 "O4'" A DG 12 ? ? "C1'" A DG 12 ? ? N9 A DG 12 ? ? 112.43 108.30 4.13 0.30 N 115 14 "O4'" A DC 16 ? ? "C1'" A DC 16 ? ? N1 A DC 16 ? ? 110.45 108.30 2.15 0.30 N 116 14 "O4'" B DC 18 ? ? "C1'" B DC 18 ? ? N1 B DC 18 ? ? 111.58 108.30 3.28 0.30 N 117 14 "O4'" B DC 23 ? ? "C1'" B DC 23 ? ? N1 B DC 23 ? ? 110.37 108.30 2.07 0.30 N 118 14 "O4'" B DC 24 ? ? "C1'" B DC 24 ? ? N1 B DC 24 ? ? 111.44 108.30 3.14 0.30 N 119 14 "O4'" B DT 27 ? ? "C1'" B DT 27 ? ? N1 B DT 27 ? ? 110.50 108.30 2.20 0.30 N 120 14 "O4'" B DC 29 ? ? "C1'" B DC 29 ? ? N1 B DC 29 ? ? 111.57 108.30 3.27 0.30 N 121 15 "O4'" A DC 2 ? ? "C1'" A DC 2 ? ? N1 A DC 2 ? ? 110.89 108.30 2.59 0.30 N 122 15 "O4'" A DT 4 ? ? "C1'" A DT 4 ? ? N1 A DT 4 ? ? 110.20 108.30 1.90 0.30 N 123 15 "O4'" A DA 9 ? ? "C1'" A DA 9 ? ? N9 A DA 9 ? ? 110.96 108.30 2.66 0.30 N 124 15 "O4'" A DA 10 ? ? "C1'" A DA 10 ? ? N9 A DA 10 ? ? 110.46 108.30 2.16 0.30 N 125 15 "O4'" A DG 12 ? ? "C1'" A DG 12 ? ? N9 A DG 12 ? ? 112.04 108.30 3.74 0.30 N 126 15 "O4'" B DC 18 ? ? "C1'" B DC 18 ? ? N1 B DC 18 ? ? 110.74 108.30 2.44 0.30 N 127 15 "O4'" B DC 23 ? ? "C1'" B DC 23 ? ? N1 B DC 23 ? ? 111.44 108.30 3.14 0.30 N 128 15 "O4'" B DT 27 ? ? "C1'" B DT 27 ? ? N1 B DT 27 ? ? 110.50 108.30 2.20 0.30 N 129 15 "O4'" B DC 29 ? ? "C1'" B DC 29 ? ? N1 B DC 29 ? ? 110.21 108.30 1.91 0.30 N # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 DT A 4 ? ? 0.083 'SIDE CHAIN' 2 1 DC A 5 ? ? 0.062 'SIDE CHAIN' 3 1 DA A 8 ? ? 0.068 'SIDE CHAIN' 4 1 DG B 19 ? ? 0.069 'SIDE CHAIN' 5 1 DC B 24 ? ? 0.091 'SIDE CHAIN' 6 1 DG B 25 ? ? 0.074 'SIDE CHAIN' 7 2 DT A 4 ? ? 0.085 'SIDE CHAIN' 8 2 DA A 8 ? ? 0.074 'SIDE CHAIN' 9 2 DG A 12 ? ? 0.075 'SIDE CHAIN' 10 2 DG B 19 ? ? 0.084 'SIDE CHAIN' 11 2 DC B 24 ? ? 0.102 'SIDE CHAIN' 12 2 DG B 25 ? ? 0.075 'SIDE CHAIN' 13 3 DA A 8 ? ? 0.057 'SIDE CHAIN' 14 3 DA A 9 ? ? 0.052 'SIDE CHAIN' 15 3 DG A 12 ? ? 0.067 'SIDE CHAIN' 16 3 DG B 19 ? ? 0.095 'SIDE CHAIN' 17 3 DC B 24 ? ? 0.066 'SIDE CHAIN' 18 3 DG B 25 ? ? 0.067 'SIDE CHAIN' 19 3 DT B 27 ? ? 0.070 'SIDE CHAIN' 20 4 DT A 4 ? ? 0.077 'SIDE CHAIN' 21 4 DA A 8 ? ? 0.076 'SIDE CHAIN' 22 4 DG A 12 ? ? 0.068 'SIDE CHAIN' 23 4 DG B 19 ? ? 0.086 'SIDE CHAIN' 24 4 DC B 24 ? ? 0.116 'SIDE CHAIN' 25 4 DG B 25 ? ? 0.068 'SIDE CHAIN' 26 4 DT B 27 ? ? 0.062 'SIDE CHAIN' 27 5 DA A 3 ? ? 0.062 'SIDE CHAIN' 28 5 DT A 4 ? ? 0.098 'SIDE CHAIN' 29 5 DA A 8 ? ? 0.058 'SIDE CHAIN' 30 5 DG A 12 ? ? 0.069 'SIDE CHAIN' 31 5 DG B 19 ? ? 0.070 'SIDE CHAIN' 32 5 DC B 24 ? ? 0.088 'SIDE CHAIN' 33 5 DG B 25 ? ? 0.051 'SIDE CHAIN' 34 6 DA A 3 ? ? 0.052 'SIDE CHAIN' 35 6 DT A 4 ? ? 0.078 'SIDE CHAIN' 36 6 DA A 8 ? ? 0.065 'SIDE CHAIN' 37 6 DG A 17 ? ? 0.059 'SIDE CHAIN' 38 6 DC B 18 ? ? 0.070 'SIDE CHAIN' 39 6 DG B 19 ? ? 0.067 'SIDE CHAIN' 40 6 DC B 24 ? ? 0.070 'SIDE CHAIN' 41 6 DG B 25 ? ? 0.072 'SIDE CHAIN' 42 7 DT A 4 ? ? 0.083 'SIDE CHAIN' 43 7 DC A 5 ? ? 0.062 'SIDE CHAIN' 44 7 DA A 8 ? ? 0.076 'SIDE CHAIN' 45 7 DG A 12 ? ? 0.073 'SIDE CHAIN' 46 7 DG B 19 ? ? 0.087 'SIDE CHAIN' 47 7 DG B 22 ? ? 0.047 'SIDE CHAIN' 48 7 DC B 24 ? ? 0.125 'SIDE CHAIN' 49 7 DG B 25 ? ? 0.083 'SIDE CHAIN' 50 7 DA B 26 ? ? 0.054 'SIDE CHAIN' 51 8 DA A 3 ? ? 0.053 'SIDE CHAIN' 52 8 DT A 4 ? ? 0.084 'SIDE CHAIN' 53 8 DA A 8 ? ? 0.064 'SIDE CHAIN' 54 8 DG A 12 ? ? 0.067 'SIDE CHAIN' 55 8 DG B 19 ? ? 0.078 'SIDE CHAIN' 56 8 DG B 25 ? ? 0.071 'SIDE CHAIN' 57 9 DT A 4 ? ? 0.077 'SIDE CHAIN' 58 9 DA A 8 ? ? 0.070 'SIDE CHAIN' 59 9 DG A 12 ? ? 0.067 'SIDE CHAIN' 60 9 DG B 19 ? ? 0.096 'SIDE CHAIN' 61 9 DC B 24 ? ? 0.089 'SIDE CHAIN' 62 9 DG B 25 ? ? 0.084 'SIDE CHAIN' 63 10 DA A 3 ? ? 0.055 'SIDE CHAIN' 64 10 DT A 4 ? ? 0.083 'SIDE CHAIN' 65 10 DA A 8 ? ? 0.059 'SIDE CHAIN' 66 10 DG A 12 ? ? 0.075 'SIDE CHAIN' 67 10 DG B 19 ? ? 0.070 'SIDE CHAIN' 68 10 DC B 24 ? ? 0.128 'SIDE CHAIN' 69 10 DG B 25 ? ? 0.063 'SIDE CHAIN' 70 11 DT A 4 ? ? 0.073 'SIDE CHAIN' 71 11 DG A 6 ? ? 0.052 'SIDE CHAIN' 72 11 DA A 7 ? ? 0.053 'SIDE CHAIN' 73 11 DA A 8 ? ? 0.063 'SIDE CHAIN' 74 11 DG A 12 ? ? 0.069 'SIDE CHAIN' 75 11 DC B 24 ? ? 0.080 'SIDE CHAIN' 76 11 DG B 25 ? ? 0.076 'SIDE CHAIN' 77 11 DT B 27 ? ? 0.061 'SIDE CHAIN' 78 12 DT A 4 ? ? 0.072 'SIDE CHAIN' 79 12 DG A 6 ? ? 0.052 'SIDE CHAIN' 80 12 DA A 7 ? ? 0.052 'SIDE CHAIN' 81 12 DA A 8 ? ? 0.055 'SIDE CHAIN' 82 12 DG A 12 ? ? 0.063 'SIDE CHAIN' 83 12 DG B 19 ? ? 0.081 'SIDE CHAIN' 84 12 DC B 24 ? ? 0.099 'SIDE CHAIN' 85 12 DG B 25 ? ? 0.086 'SIDE CHAIN' 86 13 DA A 3 ? ? 0.054 'SIDE CHAIN' 87 13 DT A 4 ? ? 0.081 'SIDE CHAIN' 88 13 DA A 8 ? ? 0.075 'SIDE CHAIN' 89 13 DA A 11 ? ? 0.053 'SIDE CHAIN' 90 13 DG A 12 ? ? 0.053 'SIDE CHAIN' 91 13 DG B 19 ? ? 0.078 'SIDE CHAIN' 92 13 DG B 22 ? ? 0.050 'SIDE CHAIN' 93 13 DC B 24 ? ? 0.099 'SIDE CHAIN' 94 13 DG B 25 ? ? 0.082 'SIDE CHAIN' 95 14 DT A 4 ? ? 0.068 'SIDE CHAIN' 96 14 DA A 8 ? ? 0.056 'SIDE CHAIN' 97 14 DG A 12 ? ? 0.062 'SIDE CHAIN' 98 14 DG B 25 ? ? 0.058 'SIDE CHAIN' 99 14 DT B 27 ? ? 0.071 'SIDE CHAIN' 100 15 DT A 4 ? ? 0.070 'SIDE CHAIN' 101 15 DC A 5 ? ? 0.062 'SIDE CHAIN' 102 15 DA A 7 ? ? 0.055 'SIDE CHAIN' 103 15 DA A 8 ? ? 0.063 'SIDE CHAIN' 104 15 DC A 13 ? ? 0.074 'SIDE CHAIN' 105 15 DG B 19 ? ? 0.080 'SIDE CHAIN' 106 15 DC B 24 ? ? 0.075 'SIDE CHAIN' 107 15 DG B 25 ? ? 0.075 'SIDE CHAIN' 108 15 DT B 27 ? ? 0.076 'SIDE CHAIN' # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1QSK 'b-form double helix' 1QSK 'bulge loop' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 2 1_555 B DG 11 1_555 0.109 -0.044 0.513 -10.637 12.802 0.004 1 A_DC2:DG28_B A 2 ? B 28 ? 19 1 1 A DA 3 1_555 B DT 10 1_555 -0.148 -0.041 0.408 10.772 -7.198 -5.957 2 A_DA3:DT27_B A 3 ? B 27 ? 20 1 1 A DT 4 1_555 B DA 9 1_555 0.253 -0.152 0.358 10.425 -15.935 -5.037 3 A_DT4:DA26_B A 4 ? B 26 ? 20 1 1 A DC 5 1_555 B DG 8 1_555 0.398 -0.213 0.582 5.203 -13.838 -4.334 4 A_DC5:DG25_B A 5 ? B 25 ? 19 1 1 A DG 6 1_555 B DC 7 1_555 0.105 -0.151 0.870 9.908 -10.107 -6.338 5 A_DG6:DC24_B A 6 ? B 24 ? 19 1 1 A DG 12 1_555 B DC 6 1_555 0.244 0.034 0.027 -11.217 -13.834 0.144 6 A_DG12:DC23_B A 12 ? B 23 ? 19 1 1 A DC 13 1_555 B DG 5 1_555 0.526 -0.123 0.339 -11.873 -9.397 -0.992 7 A_DC13:DG22_B A 13 ? B 22 ? 19 1 1 A DT 14 1_555 B DA 4 1_555 0.283 -0.223 0.750 -0.104 -5.750 -8.605 8 A_DT14:DA21_B A 14 ? B 21 ? 20 1 1 A DA 15 1_555 B DT 3 1_555 0.289 0.023 0.529 15.533 -11.762 -6.814 9 A_DA15:DT20_B A 15 ? B 20 ? 20 1 1 A DC 16 1_555 B DG 2 1_555 0.037 -0.030 0.326 8.412 -5.266 -3.592 10 A_DC16:DG19_B A 16 ? B 19 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 2 1_555 B DG 11 1_555 A DA 3 1_555 B DT 10 1_555 -1.056 -0.004 2.749 0.829 0.853 37.056 -0.101 1.754 2.724 1.341 -1.304 37.074 1 AA_DC2DA3:DT27DG28_BB A 2 ? B 28 ? A 3 ? B 27 ? 1 A DA 3 1_555 B DT 10 1_555 A DT 4 1_555 B DA 9 1_555 -0.109 -0.533 3.268 0.501 -3.777 31.759 -0.279 0.288 3.306 -6.870 -0.911 31.980 2 AA_DA3DT4:DA26DT27_BB A 3 ? B 27 ? A 4 ? B 26 ? 1 A DT 4 1_555 B DA 9 1_555 A DC 5 1_555 B DG 8 1_555 -0.321 0.167 3.397 1.174 4.896 37.636 -0.393 0.650 3.380 7.548 -1.809 37.959 3 AA_DT4DC5:DG25DA26_BB A 4 ? B 26 ? A 5 ? B 25 ? 1 A DC 5 1_555 B DG 8 1_555 A DG 6 1_555 B DC 7 1_555 -0.028 1.135 3.253 -2.331 -10.133 44.534 2.312 -0.160 2.938 -13.158 3.026 45.672 4 AA_DC5DG6:DC24DG25_BB A 5 ? B 25 ? A 6 ? B 24 ? 1 A DG 12 1_555 B DC 6 1_555 A DC 13 1_555 B DG 5 1_555 -0.605 -0.249 3.162 -2.869 1.807 33.748 -0.710 0.589 3.183 3.103 4.927 33.913 5 AA_DG12DC13:DG22DC23_BB A 12 ? B 23 ? A 13 ? B 22 ? 1 A DC 13 1_555 B DG 5 1_555 A DT 14 1_555 B DA 4 1_555 -0.490 0.180 3.357 1.335 7.299 33.806 -0.857 1.036 3.302 12.367 -2.261 34.587 6 AA_DC13DT14:DA21DG22_BB A 13 ? B 22 ? A 14 ? B 21 ? 1 A DT 14 1_555 B DA 4 1_555 A DA 15 1_555 B DT 3 1_555 0.401 1.821 3.109 3.246 -9.533 41.324 3.380 -0.258 2.667 -13.272 -4.519 42.481 7 AA_DT14DA15:DT20DA21_BB A 14 ? B 21 ? A 15 ? B 20 ? 1 A DA 15 1_555 B DT 3 1_555 A DC 16 1_555 B DG 2 1_555 0.400 -0.231 3.589 2.028 9.151 29.034 -2.433 -0.319 3.381 17.680 -3.919 30.479 8 AA_DA15DC16:DG19DT20_BB A 15 ? B 20 ? A 16 ? B 19 ? #