HEADER LIGASE/RNA 06-JUL-99 1QU3 TITLE INSIGHTS INTO EDITING FROM AN ILE-TRNA SYNTHETASE STRUCTURE WITH TITLE 2 TRNA(ILE) AND MUPIROCIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: ISOLEUCYL-TRNA; COMPND 3 CHAIN: T; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: ISOLEUCYL-TRNA SYNTHETASE; COMPND 7 CHAIN: A; COMPND 8 SYNONYM: ISOLEUCINE-TRNA LIGASE, ILERS; COMPND 9 EC: 6.1.1.5; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS; SOURCE 3 ORGANISM_TAXID: 1280; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS; SOURCE 8 ORGANISM_TAXID: 1280; SOURCE 9 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS SHUTTLING MECHANISM, EDITING TRNA SYNTHETASE, DOUBLE-SIEVE, METAL KEYWDS 2 IONS, HYDROLYTIC FUNCTION, LIGASE-RNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR L.F.SILVIAN,J.WANG,T.A.STEITZ REVDAT 5 23-AUG-23 1QU3 1 REMARK SEQADV HETSYN LINK REVDAT 4 24-FEB-09 1QU3 1 VERSN REVDAT 3 01-APR-03 1QU3 1 JRNL REVDAT 2 17-JAN-01 1QU3 1 SOURCE REMARK REVDAT 1 31-AUG-99 1QU3 0 JRNL AUTH L.F.SILVIAN,J.WANG,T.A.STEITZ JRNL TITL INSIGHTS INTO EDITING FROM AN ILE-TRNA SYNTHETASE STRUCTURE JRNL TITL 2 WITH TRNAILE AND MUPIROCIN. JRNL REF SCIENCE V. 285 1074 1999 JRNL REFN ISSN 0036-8075 JRNL PMID 10446055 JRNL DOI 10.1126/SCIENCE.285.5430.1074 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH J.WANG,L.F.SILVIAN,T.A.STEITZ REMARK 1 TITL METAL IONS THAT STABILIZE THE TRNA AND MEDIATE THE REMARK 1 TITL 2 RECOGNITION BY ITS COGNATE SYNTHETASE REMARK 1 REF TO BE PUBLISHED REMARK 1 REFN REMARK 1 REFERENCE 2 REMARK 1 AUTH J.WANG,L.F.SILVIAN,T.A.STEITZ REMARK 1 TITL SWITCHING FROM A RESTING TO SYNTHETIC AND HYDROLYTIC MODES REMARK 1 TITL 2 IN EDITING TRNA SYNTHETASES REMARK 1 REF TO BE PUBLISHED REMARK 1 REFN REMARK 1 REFERENCE 3 REMARK 1 AUTH J.WANG,L.F.SILVIAN,T.A.STEITZ REMARK 1 TITL STRUCTURE BASED DRUG DESIGN AGAINST MUPIROCIN RESISTANT REMARK 1 TITL 2 STAPHYLOCOCCUS AUREUS REMARK 1 REF TO BE PUBLISHED REMARK 1 REFN REMARK 2 REMARK 2 RESOLUTION. 2.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NULL REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 10.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 375201.150 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 85.9 REMARK 3 NUMBER OF REFLECTIONS : 17042 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.234 REMARK 3 FREE R VALUE : 0.345 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.700 REMARK 3 FREE R VALUE TEST SET COUNT : 809 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.012 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.87 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 16.10 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 884 REMARK 3 BIN R VALUE (WORKING SET) : 0.3600 REMARK 3 BIN FREE R VALUE : 0.3940 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.70 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 53 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.054 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7113 REMARK 3 NUCLEIC ACID ATOMS : 1603 REMARK 3 HETEROGEN ATOMS : 36 REMARK 3 SOLVENT ATOMS : 118 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 38.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.70 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.53000 REMARK 3 B22 (A**2) : -14.98000 REMARK 3 B33 (A**2) : 14.45000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.39 REMARK 3 ESD FROM SIGMAA (A) : 0.49 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.59 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.72 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.500 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 21.70 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.110 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.640 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.730 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.940 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.100 ; 2.500 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PA REMARK 3 PARAMETER FILE 2 : DNA-RNA_REP.PA REMARK 3 PARAMETER FILE 3 : WATER_REP.PARA REMARK 3 PARAMETER FILE 4 : XPLOR_PA REMARK 3 PARAMETER FILE 5 : XPLOR_PA REMARK 3 PARAMETER FILE 6 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : DNA-RNA.TOP REMARK 3 TOPOLOGY FILE 3 : WATER.TOP REMARK 3 TOPOLOGY FILE 4 : IRS_STUF REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 TOPOLOGY FILE 6 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1QU3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-JUL-99. REMARK 100 THE DEPOSITION ID IS D_1000009294. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CHESS REMARK 200 BEAMLINE : A1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.009 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : PRINCETON 2K REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23256 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.900 REMARK 200 RESOLUTION RANGE LOW (A) : 100.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 89.5 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.09900 REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.21 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.47 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: EVAPORATION REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 35.50000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 90.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 50.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 90.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 35.50000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 50.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: T, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASP A 882 REMARK 465 GLY A 883 REMARK 465 GLU A 884 REMARK 465 LYS A 885 REMARK 465 CYS A 886 REMARK 465 GLU A 887 REMARK 465 ARG A 888 REMARK 465 CYS A 889 REMARK 465 TRP A 890 REMARK 465 ASN A 891 REMARK 465 TYR A 892 REMARK 465 SER A 893 REMARK 465 GLU A 894 REMARK 465 ASP A 895 REMARK 465 LEU A 896 REMARK 465 GLY A 897 REMARK 465 ALA A 898 REMARK 465 VAL A 899 REMARK 465 ASP A 900 REMARK 465 GLU A 901 REMARK 465 LEU A 902 REMARK 465 THR A 903 REMARK 465 HIS A 904 REMARK 465 LEU A 905 REMARK 465 CYS A 906 REMARK 465 PRO A 907 REMARK 465 ARG A 908 REMARK 465 CYS A 909 REMARK 465 GLN A 910 REMARK 465 GLN A 911 REMARK 465 VAL A 912 REMARK 465 VAL A 913 REMARK 465 LYS A 914 REMARK 465 SER A 915 REMARK 465 LEU A 916 REMARK 465 VAL A 917 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 U T 20 N1 C2 O2 N3 C4 O4 C5 REMARK 480 U T 20 C6 REMARK 480 U T 121A C5' C4' O4' C3' O3' C2' O2' REMARK 480 U T 121A C1' N1 C2 O2 N3 C4 O4 REMARK 480 U T 121A C5 C6 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O PRO A 301 N LEU A 303 2.14 REMARK 500 O THR A 476 OG1 THR A 479 2.17 REMARK 500 O TYR A 367 OD1 ASN A 371 2.18 REMARK 500 O LYS A 823 N LEU A 825 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O2' G T 19 O SER A 672 4576 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 301 C - N - CA ANGL. DEV. = 9.3 DEGREES REMARK 500 PRO A 344 C - N - CA ANGL. DEV. = 9.3 DEGREES REMARK 500 GLY A 471 N - CA - C ANGL. DEV. = -17.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 6 60.32 -102.01 REMARK 500 ALA A 33 -71.30 -66.03 REMARK 500 ASP A 35 66.89 60.75 REMARK 500 LYS A 43 -83.70 -36.27 REMARK 500 ASN A 44 -83.47 -47.82 REMARK 500 LYS A 45 132.52 50.11 REMARK 500 ASN A 47 -153.28 24.18 REMARK 500 GLU A 48 -168.67 -76.71 REMARK 500 LEU A 63 135.74 -28.88 REMARK 500 ALA A 88 76.89 -109.55 REMARK 500 HIS A 97 -162.85 -103.62 REMARK 500 LEU A 105 -69.67 -107.96 REMARK 500 ASP A 111 78.93 73.16 REMARK 500 ARG A 112 -102.91 -37.09 REMARK 500 LYS A 113 100.59 -42.86 REMARK 500 LYS A 114 -23.80 165.11 REMARK 500 MET A 115 -106.57 -89.57 REMARK 500 SER A 116 147.54 161.10 REMARK 500 GLU A 119 3.97 -69.78 REMARK 500 PHE A 120 -31.52 -137.32 REMARK 500 LYS A 123 6.89 -67.76 REMARK 500 CYS A 124 43.03 -141.51 REMARK 500 LYS A 125 -21.01 -156.51 REMARK 500 ASP A 147 37.11 -64.10 REMARK 500 ASP A 150 59.57 -145.74 REMARK 500 THR A 154 -18.09 -38.68 REMARK 500 ASP A 172 40.56 -75.41 REMARK 500 LYS A 173 12.29 -157.26 REMARK 500 ILE A 176 71.38 -100.85 REMARK 500 SER A 188 32.56 -81.45 REMARK 500 SER A 189 -24.01 -168.22 REMARK 500 GLU A 190 70.55 53.04 REMARK 500 SER A 191 169.46 177.93 REMARK 500 GLU A 195 -73.35 2.47 REMARK 500 ALA A 196 -12.52 -44.43 REMARK 500 LYS A 215 -178.08 -174.14 REMARK 500 ASP A 216 125.71 66.51 REMARK 500 ASP A 217 -67.88 -24.38 REMARK 500 ALA A 223 -170.46 47.37 REMARK 500 ALA A 225 -97.17 -94.69 REMARK 500 ILE A 228 -153.75 -88.85 REMARK 500 ILE A 229 125.59 153.48 REMARK 500 PRO A 238 -1.69 -45.75 REMARK 500 VAL A 241 -22.65 -154.76 REMARK 500 ALA A 242 -161.66 -178.98 REMARK 500 PRO A 247 104.58 -48.81 REMARK 500 GLU A 248 -7.46 139.04 REMARK 500 LEU A 249 108.97 -164.17 REMARK 500 LYS A 250 -86.91 -149.26 REMARK 500 TYR A 251 78.96 68.11 REMARK 500 REMARK 500 THIS ENTRY HAS 195 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 992 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 13 OD1 REMARK 620 2 ASP A 13 OD2 64.9 REMARK 620 3 HIS A 201 ND1 85.8 143.8 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 992 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MRC A 993 DBREF 1QU3 A 1 917 UNP P41972 SYI_STAAU 1 917 DBREF 1QU3 T 1 74 PDB 1QU3 1QU3 1 74 SEQADV 1QU3 GLU A 4 UNP P41972 LYS 4 CONFLICT SEQADV 1QU3 LYS A 5 UNP P41972 GLU 5 CONFLICT SEQADV 1QU3 TRP A 295 UNP P41972 TYR 295 CONFLICT SEQADV 1QU3 GLN A 340 UNP P41972 LYS 340 CONFLICT SEQADV 1QU3 ASP A 644 UNP P41972 VAL 644 CONFLICT SEQRES 1 T 75 G G G C U U G U A G C U C SEQRES 2 T 75 A G G U G G U U A G A G C SEQRES 3 T 75 G C A C C C C U G A U A A SEQRES 4 T 75 G G G U G A G G U C G G U SEQRES 5 T 75 G G U U C A A G U C C A C SEQRES 6 T 75 U C A G G C C C A C SEQRES 1 A 917 MET ASP TYR GLU LYS THR LEU LEU MET PRO LYS THR ASP SEQRES 2 A 917 PHE PRO MET ARG GLY GLY LEU PRO ASN LYS GLU PRO GLN SEQRES 3 A 917 ILE GLN GLU LYS TRP ASP ALA GLU ASP GLN TYR HIS LYS SEQRES 4 A 917 ALA LEU GLU LYS ASN LYS GLY ASN GLU THR PHE ILE LEU SEQRES 5 A 917 HIS ASP GLY PRO PRO TYR ALA ASN GLY ASN LEU HIS MET SEQRES 6 A 917 GLY HIS ALA LEU ASN LYS ILE LEU LYS ASP PHE ILE VAL SEQRES 7 A 917 ARG TYR LYS THR MET GLN GLY PHE TYR ALA PRO TYR VAL SEQRES 8 A 917 PRO GLY TRP ASP THR HIS GLY LEU PRO ILE GLU GLN ALA SEQRES 9 A 917 LEU THR LYS LYS GLY VAL ASP ARG LYS LYS MET SER THR SEQRES 10 A 917 ALA GLU PHE ARG GLU LYS CYS LYS GLU PHE ALA LEU GLU SEQRES 11 A 917 GLN ILE GLU LEU GLN LYS LYS ASP PHE ARG ARG LEU GLY SEQRES 12 A 917 VAL ARG GLY ASP PHE ASN ASP PRO TYR ILE THR LEU LYS SEQRES 13 A 917 PRO GLU TYR GLU ALA ALA GLN ILE ARG ILE PHE GLY GLU SEQRES 14 A 917 MET ALA ASP LYS GLY LEU ILE TYR LYS GLY LYS LYS PRO SEQRES 15 A 917 VAL TYR TRP SER PRO SER SER GLU SER SER LEU ALA GLU SEQRES 16 A 917 ALA GLU ILE GLU TYR HIS ASP LYS ARG SER ALA SER ILE SEQRES 17 A 917 TYR VAL ALA PHE ASN VAL LYS ASP ASP LYS GLY VAL VAL SEQRES 18 A 917 ASP ALA ASP ALA LYS PHE ILE ILE TRP THR THR THR PRO SEQRES 19 A 917 TRP THR ILE PRO SER ASN VAL ALA ILE THR VAL HIS PRO SEQRES 20 A 917 GLU LEU LYS TYR GLY GLN TYR ASN VAL ASN GLY GLU LYS SEQRES 21 A 917 TYR ILE ILE ALA GLU ALA LEU SER ASP ALA VAL ALA GLU SEQRES 22 A 917 ALA LEU ASP TRP ASP LYS ALA SER ILE LYS LEU GLU LYS SEQRES 23 A 917 GLU TYR THR GLY LYS GLU LEU GLU TRP VAL VAL ALA GLN SEQRES 24 A 917 HIS PRO PHE LEU ASP ARG GLU SER LEU VAL ILE ASN GLY SEQRES 25 A 917 ASP HIS VAL THR THR ASP ALA GLY THR GLY CYS VAL HIS SEQRES 26 A 917 THR ALA PRO GLY HIS GLY GLU ASP ASP TYR ILE VAL GLY SEQRES 27 A 917 GLN GLN TYR GLU LEU PRO VAL ILE SER PRO ILE ASP ASP SEQRES 28 A 917 LYS GLY VAL PHE THR GLU GLU GLY GLY GLN PHE GLU GLY SEQRES 29 A 917 MET PHE TYR ASP LYS ALA ASN LYS ALA VAL THR ASP LEU SEQRES 30 A 917 LEU THR GLU LYS GLY ALA LEU LEU LYS LEU ASP PHE ILE SEQRES 31 A 917 THR HIS SER TYR PRO HIS ASP TRP ARG THR LYS LYS PRO SEQRES 32 A 917 VAL ILE PHE ARG ALA THR PRO GLN TRP PHE ALA SER ILE SEQRES 33 A 917 SER LYS VAL ARG GLN ASP ILE LEU ASP ALA ILE GLU ASN SEQRES 34 A 917 THR ASN PHE LYS VAL ASN TRP GLY LYS THR ARG ILE TYR SEQRES 35 A 917 ASN MET VAL ARG ASP ARG GLY GLU TRP VAL ILE SER ARG SEQRES 36 A 917 GLN ARG VAL TRP GLY VAL PRO LEU PRO VAL PHE TYR ALA SEQRES 37 A 917 GLU ASN GLY GLU ILE ILE MET THR LYS GLU THR VAL ASN SEQRES 38 A 917 HIS VAL ALA ASP LEU PHE ALA GLU HIS GLY SER ASN ILE SEQRES 39 A 917 TRP PHE GLU ARG GLU ALA LYS ASP LEU LEU PRO GLU GLY SEQRES 40 A 917 PHE THR HIS PRO GLY SER PRO ASN GLY THR PHE THR LYS SEQRES 41 A 917 GLU THR ASP ILE MET ASP VAL TRP PHE ASP SER GLY SER SEQRES 42 A 917 SER HIS ARG GLY VAL LEU GLU THR ARG PRO GLU LEU SER SEQRES 43 A 917 PHE PRO ALA ASP MET TYR LEU GLU GLY SER ASP GLN TYR SEQRES 44 A 917 ARG GLY TRP PHE ASN SER SER ILE THR THR SER VAL ALA SEQRES 45 A 917 THR ARG GLY VAL SER PRO TYR LYS PHE LEU LEU SER HIS SEQRES 46 A 917 GLY PHE VAL MET ASP GLY GLU GLY LYS LYS MET SER LYS SEQRES 47 A 917 SER LEU GLY ASN VAL ILE VAL PRO ASP GLN VAL VAL LYS SEQRES 48 A 917 GLN LYS GLY ALA ASP ILE ALA ARG LEU TRP VAL SER SER SEQRES 49 A 917 THR ASP TYR LEU ALA ASP VAL ARG ILE SER ASP GLU ILE SEQRES 50 A 917 LEU LYS GLN THR SER ASP ASP TYR ARG LYS ILE ARG ASN SEQRES 51 A 917 THR LEU ARG PHE MET LEU GLY ASN ILE ASN ASP PHE ASN SEQRES 52 A 917 PRO ASP THR ASP SER ILE PRO GLU SER GLU LEU LEU GLU SEQRES 53 A 917 VAL ASP ARG TYR LEU LEU ASN ARG LEU ARG GLU PHE THR SEQRES 54 A 917 ALA SER THR ILE ASN ASN TYR GLU ASN PHE ASP TYR LEU SEQRES 55 A 917 ASN ILE TYR GLN GLU VAL GLN ASN PHE ILE ASN VAL GLU SEQRES 56 A 917 LEU SER ASN PHE TYR LEU ASP TYR GLY LYS ASP ILE LEU SEQRES 57 A 917 TYR ILE GLU GLN ARG ASP SER HIS ILE ARG ARG SER MET SEQRES 58 A 917 GLN THR VAL LEU TYR GLN ILE LEU VAL ASP MET THR LYS SEQRES 59 A 917 LEU LEU ALA PRO ILE LEU VAL HIS THR ALA GLU GLU VAL SEQRES 60 A 917 TRP SER HIS THR PRO HIS VAL LYS GLU GLU SER VAL HIS SEQRES 61 A 917 LEU ALA ASP MET PRO LYS VAL VAL GLU VAL ASP GLN ALA SEQRES 62 A 917 LEU LEU ASP LYS TRP ARG THR PHE MET ASN LEU ARG ASP SEQRES 63 A 917 ASP VAL ASN ARG ALA LEU GLU THR ALA ARG ASN GLU LYS SEQRES 64 A 917 VAL ILE GLY LYS SER LEU GLU ALA LYS VAL THR ILE ALA SEQRES 65 A 917 SER ASN ASP LYS PHE ASN ALA SER GLU PHE LEU THR SER SEQRES 66 A 917 PHE ASP ALA LEU HIS GLN LEU PHE ILE VAL SER GLN VAL SEQRES 67 A 917 LYS VAL VAL ASP LYS LEU ASP ASP GLN ALA THR ALA TYR SEQRES 68 A 917 GLU HIS GLY ASP ILE VAL ILE GLU HIS ALA ASP GLY GLU SEQRES 69 A 917 LYS CYS GLU ARG CYS TRP ASN TYR SER GLU ASP LEU GLY SEQRES 70 A 917 ALA VAL ASP GLU LEU THR HIS LEU CYS PRO ARG CYS GLN SEQRES 71 A 917 GLN VAL VAL LYS SER LEU VAL HET ZN A 992 1 HET MRC A 993 35 HETNAM ZN ZINC ION HETNAM MRC MUPIROCIN HETSYN MRC 9-[(E)-4-[(2S,3R,4R,5S)-3,4-BIS(OXIDANYL)-5-[[(2S,3S)- HETSYN 2 MRC 3-[(2S,3S)-3-OXIDANYLBUTAN-2-YL]OXIRAN-2- HETSYN 3 MRC YL]METHYL]OXAN-2-YL]-3-METHYL-BUT-2-ENOYL]OXYNONANOIC HETSYN 4 MRC ACID; PSEUDOMONIC ACID FORMUL 3 ZN ZN 2+ FORMUL 4 MRC C26 H44 O9 FORMUL 5 HOH *118(H2 O) HELIX 1 1 GLY A 19 ASP A 35 1 17 HELIX 2 2 ASP A 35 LYS A 45 1 11 HELIX 3 3 HIS A 64 GLN A 84 1 21 HELIX 4 4 LEU A 99 LYS A 107 1 9 HELIX 5 5 THR A 117 GLU A 122 1 6 HELIX 6 6 LYS A 125 LEU A 142 1 18 HELIX 7 7 LYS A 156 ASP A 172 1 17 HELIX 8 8 ALA A 194 ALA A 196 5 3 HELIX 9 9 ASP A 217 VAL A 221 5 5 HELIX 10 10 THR A 236 ASN A 240 5 5 HELIX 11 11 LEU A 267 LEU A 275 1 9 HELIX 12 12 THR A 289 GLU A 294 1 6 HELIX 13 13 PRO A 301 ASP A 304 5 4 HELIX 14 14 GLY A 331 GLN A 340 1 10 HELIX 15 15 GLY A 360 MET A 365 5 6 HELIX 16 16 ASP A 368 THR A 379 1 12 HELIX 17 17 SER A 415 ARG A 420 1 6 HELIX 18 18 GLN A 421 ASN A 429 1 9 HELIX 19 19 ASN A 435 ARG A 446 1 12 HELIX 20 20 GLU A 478 GLY A 491 1 14 HELIX 21 21 ASN A 493 ARG A 498 1 6 HELIX 22 22 ALA A 500 LEU A 504 5 5 HELIX 23 23 VAL A 527 SER A 533 1 7 HELIX 24 24 SER A 533 VAL A 538 1 6 HELIX 25 25 ASP A 557 TYR A 559 5 3 HELIX 26 26 PHE A 563 GLY A 575 1 13 HELIX 27 27 PRO A 606 GLY A 614 1 9 HELIX 28 28 GLY A 614 SER A 623 1 10 HELIX 29 29 SER A 634 ASN A 658 1 25 HELIX 30 30 PRO A 670 LEU A 674 5 5 HELIX 31 31 LEU A 675 ASN A 698 1 24 HELIX 32 32 TYR A 701 GLU A 715 1 15 HELIX 33 33 PHE A 719 TYR A 729 1 11 HELIX 34 34 SER A 735 LEU A 749 1 15 HELIX 35 35 LEU A 749 ALA A 757 1 9 HELIX 36 36 LEU A 760 HIS A 770 1 11 HELIX 37 37 SER A 778 ALA A 782 5 5 HELIX 38 38 ASP A 791 GLU A 818 1 28 HELIX 39 39 ASN A 838 LEU A 843 1 6 HELIX 40 40 ALA A 848 PHE A 853 1 6 SHEET 1 A 2 GLY A 93 TRP A 94 0 SHEET 2 A 2 TYR A 152 ILE A 153 1 O TYR A 152 N TRP A 94 SHEET 1 B 3 LYS A 178 TRP A 185 0 SHEET 2 B 3 ILE A 405 ALA A 414 -1 N ILE A 405 O TRP A 185 SHEET 3 B 3 TRP A 451 VAL A 452 -1 O TRP A 451 N ALA A 414 SHEET 1 C 2 ILE A 198 TYR A 200 0 SHEET 2 C 2 PRO A 395 ASP A 397 -1 N HIS A 396 O GLU A 199 SHEET 1 D 2 ILE A 208 TYR A 209 0 SHEET 2 D 2 TRP A 230 THR A 231 -1 N THR A 231 O ILE A 208 SHEET 1 E 4 ASN A 213 VAL A 214 0 SHEET 2 E 4 ALA A 298 GLN A 299 -1 N GLN A 299 O ASN A 213 SHEET 3 E 4 SER A 307 GLY A 312 -1 O LEU A 308 N ALA A 298 SHEET 4 E 4 ALA A 242 VAL A 245 1 N ILE A 243 O VAL A 309 SHEET 1 F 3 ASN A 431 PHE A 432 0 SHEET 2 F 3 TYR A 579 HIS A 585 1 O LYS A 580 N ASN A 431 SHEET 3 F 3 ALA A 549 GLY A 555 1 O ALA A 549 N LYS A 580 SHEET 1 G 2 PHE A 466 TYR A 467 0 SHEET 2 G 2 THR A 519 LYS A 520 -1 O THR A 519 N TYR A 467 SHEET 1 H 2 VAL A 588 MET A 589 0 SHEET 2 H 2 VAL A 631 ARG A 632 1 O VAL A 631 N MET A 589 SHEET 1 I 4 GLN A 857 VAL A 860 0 SHEET 2 I 4 ALA A 827 ALA A 832 1 O ALA A 827 N GLN A 857 SHEET 3 I 4 GLY A 874 HIS A 880 -1 N ASP A 875 O ALA A 832 SHEET 4 I 4 ALA A 870 TYR A 871 -1 N TYR A 871 O GLY A 874 LINK OD1 ASP A 13 ZN ZN A 992 4566 1555 2.30 LINK OD2 ASP A 13 ZN ZN A 992 4566 1555 1.65 LINK ND1 HIS A 201 ZN ZN A 992 1555 1555 1.93 SITE 1 AC1 3 ASP A 13 HIS A 201 HIS A 770 SITE 1 AC2 18 PRO A 56 HIS A 64 GLY A 66 HIS A 67 SITE 2 AC2 18 GLU A 554 ASP A 557 GLN A 558 TRP A 562 SITE 3 AC2 18 HIS A 585 GLY A 586 PHE A 587 VAL A 588 SITE 4 AC2 18 LYS A 595 MET A 596 SER A 597 LYS A 598 SITE 5 AC2 18 VAL A 603 HOH A1021 CRYST1 71.000 100.000 180.000 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014085 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010000 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005556 0.00000