data_1QV8 # _entry.id 1QV8 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.386 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1QV8 pdb_00001qv8 10.2210/pdb1qv8/pdb NDB DD0060 ? ? RCSB RCSB020111 ? ? WWPDB D_1000020111 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2004-09-07 2 'Structure model' 1 1 2008-04-29 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2018-03-07 5 'Structure model' 1 4 2024-02-14 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 5 'Structure model' 'Data collection' 5 5 'Structure model' 'Database references' 6 5 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' diffrn_source 2 5 'Structure model' chem_comp_atom 3 5 'Structure model' chem_comp_bond 4 5 'Structure model' database_2 5 5 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_diffrn_source.source' 2 5 'Structure model' '_database_2.pdbx_DOI' 3 5 'Structure model' '_database_2.pdbx_database_accession' 4 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 5 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 6 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1QV8 _pdbx_database_status.recvd_initial_deposition_date 2003-08-27 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 1QV4 _pdbx_database_related.details 'B-DNA Dodecamer CGTGAATTCACG complexed with minor groove binder methylproamine' _pdbx_database_related.content_type unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Squire, C.J.' 1 'Clark, G.R.' 2 # _citation.id primary _citation.title 'In vitro studies with methylproamine: a potent new radioprotector.' _citation.journal_abbrev 'Cancer Res.' _citation.journal_volume 64 _citation.page_first 1067 _citation.page_last 1070 _citation.year 2004 _citation.journal_id_ASTM CNREA8 _citation.country US _citation.journal_id_ISSN 0008-5472 _citation.journal_id_CSD 0400 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 14871839 _citation.pdbx_database_id_DOI 10.1158/0008-5472.CAN-03-2423 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Martin, R.F.' 1 ? primary 'Broadhurst, S.' 2 ? primary 'Reum, M.E.' 3 ? primary 'Squire, C.J.' 4 ? primary 'Clark, G.R.' 5 ? primary 'Lobachevsky, P.N.' 6 ? primary 'White, J.M.' 7 ? primary 'Clark, C.' 8 ? primary 'Sy, D.' 9 ? primary 'Spotheim-Maurizot, M.' 10 ? primary 'Kelly, D.P.' 11 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3'" 3663.392 2 ? ? ? ? 2 non-polymer syn "2'-(4-DIMETHYLAMINOPHENYL)-5-(4-METHYL-1-PIPERAZINYL)-2,5'-BI-BENZIMIDAZOLE" 451.566 1 ? ? ? ? 3 water nat water 18.015 17 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code '(DC)(DG)(DC)(DG)(DA)(DA)(DT)(DT)(DC)(DG)(DC)(DG)' _entity_poly.pdbx_seq_one_letter_code_can CGCGAATTCGCG _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 "2'-(4-DIMETHYLAMINOPHENYL)-5-(4-METHYL-1-PIPERAZINYL)-2,5'-BI-BENZIMIDAZOLE" BBZ 3 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DG n 1 3 DC n 1 4 DG n 1 5 DA n 1 6 DA n 1 7 DT n 1 8 DT n 1 9 DC n 1 10 DG n 1 11 DC n 1 12 DG n # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight BBZ non-polymer . "2'-(4-DIMETHYLAMINOPHENYL)-5-(4-METHYL-1-PIPERAZINYL)-2,5'-BI-BENZIMIDAZOLE" ? 'C27 H29 N7' 451.566 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC CYT A . n A 1 2 DG 2 2 2 DG GUA A . n A 1 3 DC 3 3 3 DC CYT A . n A 1 4 DG 4 4 4 DG GUA A . n A 1 5 DA 5 5 5 DA ADE A . n A 1 6 DA 6 6 6 DA ADE A . n A 1 7 DT 7 7 7 DT THY A . n A 1 8 DT 8 8 8 DT THY A . n A 1 9 DC 9 9 9 DC CYT A . n A 1 10 DG 10 10 10 DG GUA A . n A 1 11 DC 11 11 11 DC CYT A . n A 1 12 DG 12 12 12 DG GUA A . n B 1 1 DC 1 13 13 DC CYT B . n B 1 2 DG 2 14 14 DG GUA B . n B 1 3 DC 3 15 15 DC CYT B . n B 1 4 DG 4 16 16 DG GUA B . n B 1 5 DA 5 17 17 DA ADE B . n B 1 6 DA 6 18 18 DA ADE B . n B 1 7 DT 7 19 19 DT THY B . n B 1 8 DT 8 20 20 DT THY B . n B 1 9 DC 9 21 21 DC CYT B . n B 1 10 DG 10 22 22 DG GUA B . n B 1 11 DC 11 23 23 DC CYT B . n B 1 12 DG 12 24 24 DG GUA B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 BBZ 1 25 25 BBZ BBZ B . D 3 HOH 1 29 29 HOH HOH A . D 3 HOH 2 35 35 HOH HOH A . D 3 HOH 3 38 38 HOH HOH A . D 3 HOH 4 39 39 HOH HOH A . D 3 HOH 5 40 40 HOH HOH A . D 3 HOH 6 42 42 HOH HOH A . D 3 HOH 7 44 44 HOH HOH A . D 3 HOH 8 49 49 HOH HOH A . D 3 HOH 9 52 52 HOH HOH A . D 3 HOH 10 53 53 HOH HOH A . D 3 HOH 11 55 55 HOH HOH A . E 3 HOH 1 31 31 HOH HOH B . E 3 HOH 2 33 33 HOH HOH B . E 3 HOH 3 36 36 HOH HOH B . E 3 HOH 4 41 41 HOH HOH B . E 3 HOH 5 43 43 HOH HOH B . E 3 HOH 6 48 48 HOH HOH B . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal Siemens 'data collection' SMART ? 1 SAINT 'data reduction' '& SADABS' ? 2 CNS refinement . ? 3 SMART 'data reduction' '(SIEMENS)' ? 4 SAINT 'data scaling' . ? 5 SADABS 'data scaling' . ? 6 CNS phasing . ? 7 # _cell.entry_id 1QV8 _cell.length_a 25.310 _cell.length_b 40.400 _cell.length_c 65.920 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1QV8 _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? # _exptl.entry_id 1QV8 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.20 _exptl_crystal.density_percent_sol 44.18 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.pdbx_details 'MgCl2, cacodylate, MPD, spermine HCl, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K' _exptl_crystal_grow.pdbx_pH_range . # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 MgCl2 ? ? ? 1 2 1 cacodylate ? ? ? 1 3 1 MPD ? ? ? 1 4 1 spermine ? ? ? 1 5 1 HCl ? ? ? 1 6 1 H2O ? ? ? 1 7 2 MgCl2 ? ? ? 1 8 2 cacodylate ? ? ? 1 9 2 MPD ? ? ? 1 10 2 spermine ? ? ? 1 11 2 H2O ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 293 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type SIEMENS _diffrn_detector.pdbx_collection_date 1997-07-26 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator graphite _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.71073 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type SIEMENS _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.71073 # _reflns.entry_id 1QV8 _reflns.observed_criterion_sigma_F 0.0 _reflns.observed_criterion_sigma_I 0.0 _reflns.d_resolution_high 2.5 _reflns.d_resolution_low 500 _reflns.number_all ? _reflns.number_obs 2611 _reflns.percent_possible_obs 100.0 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.5 _reflns_shell.d_res_low 2.59 _reflns_shell.percent_possible_all 100 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 1QV8 _refine.ls_d_res_high 2.5 _refine.ls_d_res_low 8 _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 2348 _refine.ls_number_reflns_R_free 220 _refine.ls_percent_reflns_obs 94.8 _refine.ls_R_factor_all 0.21 _refine.ls_R_factor_obs 0.21 _refine.ls_R_factor_R_work 0.219 _refine.ls_R_factor_R_free 0.269 _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_R_free 8.9 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model ? _refine.pdbx_ls_cross_valid_method ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_stereochemistry_target_values ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.details ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_SU_B ? _refine.overall_SU_ML ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 486 _refine_hist.pdbx_number_atoms_ligand 34 _refine_hist.number_atoms_solvent 17 _refine_hist.number_atoms_total 537 _refine_hist.d_res_high 2.5 _refine_hist.d_res_low 8 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 1.9 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 3.4 ? ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it 1.917 1.5 ? ? 'X-RAY DIFFRACTION' ? c_scbond_it 2.098 2.0 ? ? 'X-RAY DIFFRACTION' ? c_mcangle_it 0.000 2.0 ? ? 'X-RAY DIFFRACTION' ? c_scangle_it 3.357 2.5 ? ? 'X-RAY DIFFRACTION' ? # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 dna-rna_rep.param ? 'X-RAY DIFFRACTION' 2 pro.param ? 'X-RAY DIFFRACTION' 3 water_rep.param ? 'X-RAY DIFFRACTION' # _database_PDB_matrix.entry_id 1QV8 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1QV8 _struct.title 'B-DNA Dodecamer d(CGCGAATTCGCG)2 complexed with proamine' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1QV8 _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'B-DNA, minor groove binder, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 3 ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 1QV8 _struct_ref.pdbx_db_accession 1QV8 _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1QV8 A 1 ? 12 ? 1QV8 1 ? 12 ? 1 12 2 1 1QV8 B 1 ? 12 ? 1QV8 13 ? 24 ? 13 24 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.pdbx_parent_biol_id ? _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A DC 1 N3 ? ? ? 1_555 B DG 12 N1 ? ? A DC 1 B DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 B DG 12 O6 ? ? A DC 1 B DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 1 O2 ? ? ? 1_555 B DG 12 N2 ? ? A DC 1 B DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DG 2 N1 ? ? ? 1_555 B DC 11 N3 ? ? A DG 2 B DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DG 2 N2 ? ? ? 1_555 B DC 11 O2 ? ? A DG 2 B DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DG 2 O6 ? ? ? 1_555 B DC 11 N4 ? ? A DG 2 B DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DC 3 N3 ? ? ? 1_555 B DG 10 N1 ? ? A DC 3 B DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DC 3 N4 ? ? ? 1_555 B DG 10 O6 ? ? A DC 3 B DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DC 3 O2 ? ? ? 1_555 B DG 10 N2 ? ? A DC 3 B DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DG 4 N1 ? ? ? 1_555 B DC 9 N3 ? ? A DG 4 B DC 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DG 4 N2 ? ? ? 1_555 B DC 9 O2 ? ? A DG 4 B DC 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DG 4 O6 ? ? ? 1_555 B DC 9 N4 ? ? A DG 4 B DC 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DA 5 N1 ? ? ? 1_555 B DT 8 N3 ? ? A DA 5 B DT 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DA 5 N6 ? ? ? 1_555 B DT 8 O4 ? ? A DA 5 B DT 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DA 6 N1 ? ? ? 1_555 B DT 7 N3 ? ? A DA 6 B DT 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DA 6 N6 ? ? ? 1_555 B DT 7 O4 ? ? A DA 6 B DT 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DT 7 N3 ? ? ? 1_555 B DA 6 N1 ? ? A DT 7 B DA 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DT 7 O4 ? ? ? 1_555 B DA 6 N6 ? ? A DT 7 B DA 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DT 8 N3 ? ? ? 1_555 B DA 5 N1 ? ? A DT 8 B DA 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DT 8 O4 ? ? ? 1_555 B DA 5 N6 ? ? A DT 8 B DA 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DC 9 N3 ? ? ? 1_555 B DG 4 N1 ? ? A DC 9 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DC 9 N4 ? ? ? 1_555 B DG 4 O6 ? ? A DC 9 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DC 9 O2 ? ? ? 1_555 B DG 4 N2 ? ? A DC 9 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DG 10 N1 ? ? ? 1_555 B DC 3 N3 ? ? A DG 10 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DG 10 N2 ? ? ? 1_555 B DC 3 O2 ? ? A DG 10 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DG 10 O6 ? ? ? 1_555 B DC 3 N4 ? ? A DG 10 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A DC 11 N3 ? ? ? 1_555 B DG 2 N1 ? ? A DC 11 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A DC 11 N4 ? ? ? 1_555 B DG 2 O6 ? ? A DC 11 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A DC 11 O2 ? ? ? 1_555 B DG 2 N2 ? ? A DC 11 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A DG 12 N1 ? ? ? 1_555 B DC 1 N3 ? ? A DG 12 B DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A DG 12 N2 ? ? ? 1_555 B DC 1 O2 ? ? A DG 12 B DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A DG 12 O6 ? ? ? 1_555 B DC 1 N4 ? ? A DG 12 B DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software B BBZ 25 ? 10 'BINDING SITE FOR RESIDUE BBZ B 25' 1 ? ? ? ? ? ? ? # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 10 DA A 6 ? DA A 6 . ? 1_555 ? 2 AC1 10 DT A 7 ? DT A 7 . ? 1_555 ? 3 AC1 10 DT A 8 ? DT A 8 . ? 1_555 ? 4 AC1 10 DC A 9 ? DC A 9 . ? 1_555 ? 5 AC1 10 DC A 11 ? DC A 11 . ? 1_555 ? 6 AC1 10 DG B 4 ? DG B 16 . ? 1_555 ? 7 AC1 10 DA B 5 ? DA B 17 . ? 1_555 ? 8 AC1 10 DA B 6 ? DA B 18 . ? 1_555 ? 9 AC1 10 DT B 7 ? DT B 19 . ? 1_555 ? 10 AC1 10 DT B 8 ? DT B 20 . ? 1_555 ? # _struct_site_keywords.site_id 1 _struct_site_keywords.text 'Minor Groove Binder' # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal BBZ C C Y N 1 BBZ C1 C Y N 2 BBZ C2 C Y N 3 BBZ C3 C Y N 4 BBZ C4 C Y N 5 BBZ C5 C Y N 6 BBZ N N N N 7 BBZ C6 C Y N 8 BBZ C7 C Y N 9 BBZ C8 C Y N 10 BBZ C9 C Y N 11 BBZ C10 C Y N 12 BBZ C11 C Y N 13 BBZ C12 C Y N 14 BBZ N1 N Y N 15 BBZ N2 N Y N 16 BBZ C13 C Y N 17 BBZ C14 C Y N 18 BBZ C15 C Y N 19 BBZ C16 C Y N 20 BBZ C17 C Y N 21 BBZ C18 C Y N 22 BBZ N3 N Y N 23 BBZ N4 N Y N 24 BBZ C19 C Y N 25 BBZ N5 N N N 26 BBZ N6 N N N 27 BBZ C20 C N N 28 BBZ C21 C N N 29 BBZ C22 C N N 30 BBZ C23 C N N 31 BBZ C24 C N N 32 BBZ CN1 C N N 33 BBZ CN2 C N N 34 BBZ H2 H N N 35 BBZ H3 H N N 36 BBZ H4 H N N 37 BBZ H5 H N N 38 BBZ H9 H N N 39 BBZ H10 H N N 40 BBZ H12 H N N 41 BBZ HN2 H N N 42 BBZ H16 H N N 43 BBZ H17 H N N 44 BBZ HN4 H N N 45 BBZ H19 H N N 46 BBZ H201 H N N 47 BBZ H202 H N N 48 BBZ H211 H N N 49 BBZ H212 H N N 50 BBZ H221 H N N 51 BBZ H222 H N N 52 BBZ H231 H N N 53 BBZ H232 H N N 54 BBZ H241 H N N 55 BBZ H242 H N N 56 BBZ H243 H N N 57 BBZ HN11 H N N 58 BBZ HN12 H N N 59 BBZ HN13 H N N 60 BBZ HN21 H N N 61 BBZ HN22 H N N 62 BBZ HN23 H N N 63 DA OP3 O N N 64 DA P P N N 65 DA OP1 O N N 66 DA OP2 O N N 67 DA "O5'" O N N 68 DA "C5'" C N N 69 DA "C4'" C N R 70 DA "O4'" O N N 71 DA "C3'" C N S 72 DA "O3'" O N N 73 DA "C2'" C N N 74 DA "C1'" C N R 75 DA N9 N Y N 76 DA C8 C Y N 77 DA N7 N Y N 78 DA C5 C Y N 79 DA C6 C Y N 80 DA N6 N N N 81 DA N1 N Y N 82 DA C2 C Y N 83 DA N3 N Y N 84 DA C4 C Y N 85 DA HOP3 H N N 86 DA HOP2 H N N 87 DA "H5'" H N N 88 DA "H5''" H N N 89 DA "H4'" H N N 90 DA "H3'" H N N 91 DA "HO3'" H N N 92 DA "H2'" H N N 93 DA "H2''" H N N 94 DA "H1'" H N N 95 DA H8 H N N 96 DA H61 H N N 97 DA H62 H N N 98 DA H2 H N N 99 DC OP3 O N N 100 DC P P N N 101 DC OP1 O N N 102 DC OP2 O N N 103 DC "O5'" O N N 104 DC "C5'" C N N 105 DC "C4'" C N R 106 DC "O4'" O N N 107 DC "C3'" C N S 108 DC "O3'" O N N 109 DC "C2'" C N N 110 DC "C1'" C N R 111 DC N1 N N N 112 DC C2 C N N 113 DC O2 O N N 114 DC N3 N N N 115 DC C4 C N N 116 DC N4 N N N 117 DC C5 C N N 118 DC C6 C N N 119 DC HOP3 H N N 120 DC HOP2 H N N 121 DC "H5'" H N N 122 DC "H5''" H N N 123 DC "H4'" H N N 124 DC "H3'" H N N 125 DC "HO3'" H N N 126 DC "H2'" H N N 127 DC "H2''" H N N 128 DC "H1'" H N N 129 DC H41 H N N 130 DC H42 H N N 131 DC H5 H N N 132 DC H6 H N N 133 DG OP3 O N N 134 DG P P N N 135 DG OP1 O N N 136 DG OP2 O N N 137 DG "O5'" O N N 138 DG "C5'" C N N 139 DG "C4'" C N R 140 DG "O4'" O N N 141 DG "C3'" C N S 142 DG "O3'" O N N 143 DG "C2'" C N N 144 DG "C1'" C N R 145 DG N9 N Y N 146 DG C8 C Y N 147 DG N7 N Y N 148 DG C5 C Y N 149 DG C6 C N N 150 DG O6 O N N 151 DG N1 N N N 152 DG C2 C N N 153 DG N2 N N N 154 DG N3 N N N 155 DG C4 C Y N 156 DG HOP3 H N N 157 DG HOP2 H N N 158 DG "H5'" H N N 159 DG "H5''" H N N 160 DG "H4'" H N N 161 DG "H3'" H N N 162 DG "HO3'" H N N 163 DG "H2'" H N N 164 DG "H2''" H N N 165 DG "H1'" H N N 166 DG H8 H N N 167 DG H1 H N N 168 DG H21 H N N 169 DG H22 H N N 170 DT OP3 O N N 171 DT P P N N 172 DT OP1 O N N 173 DT OP2 O N N 174 DT "O5'" O N N 175 DT "C5'" C N N 176 DT "C4'" C N R 177 DT "O4'" O N N 178 DT "C3'" C N S 179 DT "O3'" O N N 180 DT "C2'" C N N 181 DT "C1'" C N R 182 DT N1 N N N 183 DT C2 C N N 184 DT O2 O N N 185 DT N3 N N N 186 DT C4 C N N 187 DT O4 O N N 188 DT C5 C N N 189 DT C7 C N N 190 DT C6 C N N 191 DT HOP3 H N N 192 DT HOP2 H N N 193 DT "H5'" H N N 194 DT "H5''" H N N 195 DT "H4'" H N N 196 DT "H3'" H N N 197 DT "HO3'" H N N 198 DT "H2'" H N N 199 DT "H2''" H N N 200 DT "H1'" H N N 201 DT H3 H N N 202 DT H71 H N N 203 DT H72 H N N 204 DT H73 H N N 205 DT H6 H N N 206 HOH O O N N 207 HOH H1 H N N 208 HOH H2 H N N 209 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal BBZ C C2 doub Y N 1 BBZ C C4 sing Y N 2 BBZ C N sing N N 3 BBZ C1 C3 doub Y N 4 BBZ C1 C5 sing Y N 5 BBZ C1 C6 sing Y N 6 BBZ C2 C3 sing Y N 7 BBZ C2 H2 sing N N 8 BBZ C3 H3 sing N N 9 BBZ C4 C5 doub Y N 10 BBZ C4 H4 sing N N 11 BBZ C5 H5 sing N N 12 BBZ N CN1 sing N N 13 BBZ N CN2 sing N N 14 BBZ C6 N1 doub Y N 15 BBZ C6 N2 sing Y N 16 BBZ C7 C8 doub Y N 17 BBZ C7 C12 sing Y N 18 BBZ C7 N1 sing Y N 19 BBZ C8 C9 sing Y N 20 BBZ C8 N2 sing Y N 21 BBZ C9 C10 doub Y N 22 BBZ C9 H9 sing N N 23 BBZ C10 C11 sing Y N 24 BBZ C10 H10 sing N N 25 BBZ C11 C12 doub Y N 26 BBZ C11 C13 sing Y N 27 BBZ C12 H12 sing N N 28 BBZ N2 HN2 sing N N 29 BBZ C13 N3 doub Y N 30 BBZ C13 N4 sing Y N 31 BBZ C14 C15 doub Y N 32 BBZ C14 N3 sing Y N 33 BBZ C14 C19 sing Y N 34 BBZ C15 C16 sing Y N 35 BBZ C15 N4 sing Y N 36 BBZ C16 C17 doub Y N 37 BBZ C16 H16 sing N N 38 BBZ C17 C18 sing Y N 39 BBZ C17 H17 sing N N 40 BBZ C18 C19 doub Y N 41 BBZ C18 N5 sing N N 42 BBZ N4 HN4 sing N N 43 BBZ C19 H19 sing N N 44 BBZ N5 C20 sing N N 45 BBZ N5 C23 sing N N 46 BBZ N6 C21 sing N N 47 BBZ N6 C22 sing N N 48 BBZ N6 C24 sing N N 49 BBZ C20 C21 sing N N 50 BBZ C20 H201 sing N N 51 BBZ C20 H202 sing N N 52 BBZ C21 H211 sing N N 53 BBZ C21 H212 sing N N 54 BBZ C22 C23 sing N N 55 BBZ C22 H221 sing N N 56 BBZ C22 H222 sing N N 57 BBZ C23 H231 sing N N 58 BBZ C23 H232 sing N N 59 BBZ C24 H241 sing N N 60 BBZ C24 H242 sing N N 61 BBZ C24 H243 sing N N 62 BBZ CN1 HN11 sing N N 63 BBZ CN1 HN12 sing N N 64 BBZ CN1 HN13 sing N N 65 BBZ CN2 HN21 sing N N 66 BBZ CN2 HN22 sing N N 67 BBZ CN2 HN23 sing N N 68 DA OP3 P sing N N 69 DA OP3 HOP3 sing N N 70 DA P OP1 doub N N 71 DA P OP2 sing N N 72 DA P "O5'" sing N N 73 DA OP2 HOP2 sing N N 74 DA "O5'" "C5'" sing N N 75 DA "C5'" "C4'" sing N N 76 DA "C5'" "H5'" sing N N 77 DA "C5'" "H5''" sing N N 78 DA "C4'" "O4'" sing N N 79 DA "C4'" "C3'" sing N N 80 DA "C4'" "H4'" sing N N 81 DA "O4'" "C1'" sing N N 82 DA "C3'" "O3'" sing N N 83 DA "C3'" "C2'" sing N N 84 DA "C3'" "H3'" sing N N 85 DA "O3'" "HO3'" sing N N 86 DA "C2'" "C1'" sing N N 87 DA "C2'" "H2'" sing N N 88 DA "C2'" "H2''" sing N N 89 DA "C1'" N9 sing N N 90 DA "C1'" "H1'" sing N N 91 DA N9 C8 sing Y N 92 DA N9 C4 sing Y N 93 DA C8 N7 doub Y N 94 DA C8 H8 sing N N 95 DA N7 C5 sing Y N 96 DA C5 C6 sing Y N 97 DA C5 C4 doub Y N 98 DA C6 N6 sing N N 99 DA C6 N1 doub Y N 100 DA N6 H61 sing N N 101 DA N6 H62 sing N N 102 DA N1 C2 sing Y N 103 DA C2 N3 doub Y N 104 DA C2 H2 sing N N 105 DA N3 C4 sing Y N 106 DC OP3 P sing N N 107 DC OP3 HOP3 sing N N 108 DC P OP1 doub N N 109 DC P OP2 sing N N 110 DC P "O5'" sing N N 111 DC OP2 HOP2 sing N N 112 DC "O5'" "C5'" sing N N 113 DC "C5'" "C4'" sing N N 114 DC "C5'" "H5'" sing N N 115 DC "C5'" "H5''" sing N N 116 DC "C4'" "O4'" sing N N 117 DC "C4'" "C3'" sing N N 118 DC "C4'" "H4'" sing N N 119 DC "O4'" "C1'" sing N N 120 DC "C3'" "O3'" sing N N 121 DC "C3'" "C2'" sing N N 122 DC "C3'" "H3'" sing N N 123 DC "O3'" "HO3'" sing N N 124 DC "C2'" "C1'" sing N N 125 DC "C2'" "H2'" sing N N 126 DC "C2'" "H2''" sing N N 127 DC "C1'" N1 sing N N 128 DC "C1'" "H1'" sing N N 129 DC N1 C2 sing N N 130 DC N1 C6 sing N N 131 DC C2 O2 doub N N 132 DC C2 N3 sing N N 133 DC N3 C4 doub N N 134 DC C4 N4 sing N N 135 DC C4 C5 sing N N 136 DC N4 H41 sing N N 137 DC N4 H42 sing N N 138 DC C5 C6 doub N N 139 DC C5 H5 sing N N 140 DC C6 H6 sing N N 141 DG OP3 P sing N N 142 DG OP3 HOP3 sing N N 143 DG P OP1 doub N N 144 DG P OP2 sing N N 145 DG P "O5'" sing N N 146 DG OP2 HOP2 sing N N 147 DG "O5'" "C5'" sing N N 148 DG "C5'" "C4'" sing N N 149 DG "C5'" "H5'" sing N N 150 DG "C5'" "H5''" sing N N 151 DG "C4'" "O4'" sing N N 152 DG "C4'" "C3'" sing N N 153 DG "C4'" "H4'" sing N N 154 DG "O4'" "C1'" sing N N 155 DG "C3'" "O3'" sing N N 156 DG "C3'" "C2'" sing N N 157 DG "C3'" "H3'" sing N N 158 DG "O3'" "HO3'" sing N N 159 DG "C2'" "C1'" sing N N 160 DG "C2'" "H2'" sing N N 161 DG "C2'" "H2''" sing N N 162 DG "C1'" N9 sing N N 163 DG "C1'" "H1'" sing N N 164 DG N9 C8 sing Y N 165 DG N9 C4 sing Y N 166 DG C8 N7 doub Y N 167 DG C8 H8 sing N N 168 DG N7 C5 sing Y N 169 DG C5 C6 sing N N 170 DG C5 C4 doub Y N 171 DG C6 O6 doub N N 172 DG C6 N1 sing N N 173 DG N1 C2 sing N N 174 DG N1 H1 sing N N 175 DG C2 N2 sing N N 176 DG C2 N3 doub N N 177 DG N2 H21 sing N N 178 DG N2 H22 sing N N 179 DG N3 C4 sing N N 180 DT OP3 P sing N N 181 DT OP3 HOP3 sing N N 182 DT P OP1 doub N N 183 DT P OP2 sing N N 184 DT P "O5'" sing N N 185 DT OP2 HOP2 sing N N 186 DT "O5'" "C5'" sing N N 187 DT "C5'" "C4'" sing N N 188 DT "C5'" "H5'" sing N N 189 DT "C5'" "H5''" sing N N 190 DT "C4'" "O4'" sing N N 191 DT "C4'" "C3'" sing N N 192 DT "C4'" "H4'" sing N N 193 DT "O4'" "C1'" sing N N 194 DT "C3'" "O3'" sing N N 195 DT "C3'" "C2'" sing N N 196 DT "C3'" "H3'" sing N N 197 DT "O3'" "HO3'" sing N N 198 DT "C2'" "C1'" sing N N 199 DT "C2'" "H2'" sing N N 200 DT "C2'" "H2''" sing N N 201 DT "C1'" N1 sing N N 202 DT "C1'" "H1'" sing N N 203 DT N1 C2 sing N N 204 DT N1 C6 sing N N 205 DT C2 O2 doub N N 206 DT C2 N3 sing N N 207 DT N3 C4 sing N N 208 DT N3 H3 sing N N 209 DT C4 O4 doub N N 210 DT C4 C5 sing N N 211 DT C5 C7 sing N N 212 DT C5 C6 doub N N 213 DT C7 H71 sing N N 214 DT C7 H72 sing N N 215 DT C7 H73 sing N N 216 DT C6 H6 sing N N 217 HOH O H1 sing N N 218 HOH O H2 sing N N 219 # _ndb_struct_conf_na.entry_id 1QV8 _ndb_struct_conf_na.feature 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 1 1_555 B DG 12 1_555 0.146 -0.076 -0.045 4.569 -14.095 0.346 1 A_DC1:DG24_B A 1 ? B 24 ? 19 1 1 A DG 2 1_555 B DC 11 1_555 -0.305 -0.248 0.346 0.437 -12.390 -4.978 2 A_DG2:DC23_B A 2 ? B 23 ? 19 1 1 A DC 3 1_555 B DG 10 1_555 -0.091 -0.206 0.098 -0.825 -3.894 -3.941 3 A_DC3:DG22_B A 3 ? B 22 ? 19 1 1 A DG 4 1_555 B DC 9 1_555 -0.642 -0.293 -0.056 10.578 -8.172 0.274 4 A_DG4:DC21_B A 4 ? B 21 ? 19 1 1 A DA 5 1_555 B DT 8 1_555 0.072 -0.110 -0.320 1.737 -16.880 10.478 5 A_DA5:DT20_B A 5 ? B 20 ? 20 1 1 A DA 6 1_555 B DT 7 1_555 0.030 -0.078 0.307 4.816 -19.621 9.107 6 A_DA6:DT19_B A 6 ? B 19 ? 20 1 1 A DT 7 1_555 B DA 6 1_555 -0.014 -0.153 0.340 -0.746 -16.137 11.308 7 A_DT7:DA18_B A 7 ? B 18 ? 20 1 1 A DT 8 1_555 B DA 5 1_555 -0.194 -0.254 0.313 -6.627 -13.462 3.823 8 A_DT8:DA17_B A 8 ? B 17 ? 20 1 1 A DC 9 1_555 B DG 4 1_555 0.009 -0.295 -0.010 -10.493 -10.299 -3.032 9 A_DC9:DG16_B A 9 ? B 16 ? 19 1 1 A DG 10 1_555 B DC 3 1_555 0.285 -0.342 -0.190 1.062 -0.474 -1.309 10 A_DG10:DC15_B A 10 ? B 15 ? 19 1 1 A DC 11 1_555 B DG 2 1_555 0.015 -0.141 0.368 -4.526 -18.862 -6.055 11 A_DC11:DG14_B A 11 ? B 14 ? 19 1 1 A DG 12 1_555 B DC 1 1_555 0.144 -0.153 0.241 10.376 -3.301 -7.183 12 A_DG12:DC13_B A 12 ? B 13 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 1 1_555 B DG 12 1_555 A DG 2 1_555 B DC 11 1_555 -0.335 0.430 3.501 -3.623 3.898 34.884 0.084 -0.029 3.543 6.455 6.001 35.275 1 AA_DC1DG2:DC23DG24_BB A 1 ? B 24 ? A 2 ? B 23 ? 1 A DG 2 1_555 B DC 11 1_555 A DC 3 1_555 B DG 10 1_555 0.784 0.220 3.416 4.896 -2.352 37.246 0.665 -0.542 3.468 -3.658 -7.617 37.626 2 AA_DG2DC3:DG22DC23_BB A 2 ? B 23 ? A 3 ? B 22 ? 1 A DC 3 1_555 B DG 10 1_555 A DG 4 1_555 B DC 9 1_555 0.058 1.085 3.220 2.179 6.669 28.947 0.685 0.353 3.375 13.100 -4.279 29.767 3 AA_DC3DG4:DC21DG22_BB A 3 ? B 22 ? A 4 ? B 21 ? 1 A DG 4 1_555 B DC 9 1_555 A DA 5 1_555 B DT 8 1_555 0.037 0.321 3.466 3.129 6.056 37.546 -0.327 0.365 3.466 9.315 -4.812 38.137 4 AA_DG4DA5:DT20DC21_BB A 4 ? B 21 ? A 5 ? B 20 ? 1 A DA 5 1_555 B DT 8 1_555 A DA 6 1_555 B DT 7 1_555 0.046 0.139 3.119 -4.517 2.057 35.324 -0.058 -0.699 3.093 3.370 7.399 35.660 5 AA_DA5DA6:DT19DT20_BB A 5 ? B 20 ? A 6 ? B 19 ? 1 A DA 6 1_555 B DT 7 1_555 A DT 7 1_555 B DA 6 1_555 0.252 -0.657 3.365 -0.206 3.328 34.178 -1.644 -0.459 3.286 5.646 0.350 34.335 6 AA_DA6DT7:DA18DT19_BB A 6 ? B 19 ? A 7 ? B 18 ? 1 A DT 7 1_555 B DA 6 1_555 A DT 8 1_555 B DA 5 1_555 -0.410 -0.108 3.378 -1.800 0.905 34.893 -0.321 0.402 3.391 1.508 2.999 34.949 7 AA_DT7DT8:DA17DA18_BB A 7 ? B 18 ? A 8 ? B 17 ? 1 A DT 8 1_555 B DA 5 1_555 A DC 9 1_555 B DG 4 1_555 -0.233 -0.048 3.372 3.036 -2.332 38.091 0.228 0.748 3.341 -3.562 -4.638 38.275 8 AA_DT8DC9:DG16DA17_BB A 8 ? B 17 ? A 9 ? B 16 ? 1 A DC 9 1_555 B DG 4 1_555 A DG 10 1_555 B DC 3 1_555 0.353 1.206 3.220 -0.483 0.922 33.502 1.941 -0.690 3.246 1.599 0.837 33.517 9 AA_DC9DG10:DC15DG16_BB A 9 ? B 16 ? A 10 ? B 15 ? 1 A DG 10 1_555 B DC 3 1_555 A DC 11 1_555 B DG 2 1_555 -0.886 0.688 3.600 -3.745 -7.341 37.229 2.073 0.837 3.477 -11.330 5.780 38.099 10 AA_DG10DC11:DG14DC15_BB A 10 ? B 15 ? A 11 ? B 14 ? 1 A DC 11 1_555 B DG 2 1_555 A DG 12 1_555 B DC 1 1_555 0.395 0.507 3.122 3.634 -1.108 40.151 0.855 -0.180 3.130 -1.610 -5.279 40.323 11 AA_DC11DG12:DC13DG14_BB A 11 ? B 14 ? A 12 ? B 13 ? # _atom_sites.entry_id 1QV8 _atom_sites.fract_transf_matrix[1][1] 0.039510 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.024752 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.015170 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P # loop_