data_1R0I # _entry.id 1R0I # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.380 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1R0I pdb_00001r0i 10.2210/pdb1r0i/pdb RCSB RCSB020290 ? ? WWPDB D_1000020290 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1R0F '1R0F contains gallium-substituted rubredoxin' unspecified PDB 1R0G '1R0G contains mercury-substituted rubredoxin' unspecified PDB 1R0H '1R0H contains cobalt-substituted rubredoxin' unspecified PDB 1R0J '1R0J contains nickel-substituted rubredoxin' unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1R0I _pdbx_database_status.recvd_initial_deposition_date 2003-09-22 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf REL _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Maher, M.' 1 'Cross, M.' 2 'Wilce, M.C.J.' 3 'Guss, J.M.' 4 'Wedd, A.G.' 5 # _citation.id primary _citation.title 'Metal-substituted derivatives of the rubredoxin from Clostridium pasteurianum.' _citation.journal_abbrev 'Acta Crystallogr.,Sect.D' _citation.journal_volume 60 _citation.page_first 298 _citation.page_last 303 _citation.year 2004 _citation.journal_id_ASTM ABCRE6 _citation.country DK _citation.journal_id_ISSN 0907-4449 _citation.journal_id_CSD 0766 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 14747706 _citation.pdbx_database_id_DOI 10.1107/S090744490302794X # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Maher, M.' 1 ? primary 'Cross, M.' 2 ? primary 'Wilce, M.C.' 3 ? primary 'Guss, J.M.' 4 ? primary 'Wedd, A.G.' 5 ? # _cell.entry_id 1R0I _cell.length_a 64.294 _cell.length_b 64.294 _cell.length_c 32.567 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 9 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1R0I _symmetry.space_group_name_H-M 'H 3' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man Rubredoxin 6051.611 1 ? ? ? ? 2 non-polymer syn 'CADMIUM ION' 112.411 1 ? ? ? ? 3 water nat water 18.015 41 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name Rd # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code MKKYTCTVCGYIYNPEDGDPDNGVNPGTDFKDIPDDWVCPLCGVGKDQFEEVEE _entity_poly.pdbx_seq_one_letter_code_can MKKYTCTVCGYIYNPEDGDPDNGVNPGTDFKDIPDDWVCPLCGVGKDQFEEVEE _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 LYS n 1 3 LYS n 1 4 TYR n 1 5 THR n 1 6 CYS n 1 7 THR n 1 8 VAL n 1 9 CYS n 1 10 GLY n 1 11 TYR n 1 12 ILE n 1 13 TYR n 1 14 ASN n 1 15 PRO n 1 16 GLU n 1 17 ASP n 1 18 GLY n 1 19 ASP n 1 20 PRO n 1 21 ASP n 1 22 ASN n 1 23 GLY n 1 24 VAL n 1 25 ASN n 1 26 PRO n 1 27 GLY n 1 28 THR n 1 29 ASP n 1 30 PHE n 1 31 LYS n 1 32 ASP n 1 33 ILE n 1 34 PRO n 1 35 ASP n 1 36 ASP n 1 37 TRP n 1 38 VAL n 1 39 CYS n 1 40 PRO n 1 41 LEU n 1 42 CYS n 1 43 GLY n 1 44 VAL n 1 45 GLY n 1 46 LYS n 1 47 ASP n 1 48 GLN n 1 49 PHE n 1 50 GLU n 1 51 GLU n 1 52 VAL n 1 53 GLU n 1 54 GLU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Clostridium _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Clostridium pasteurianum' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 1501 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain JM109 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pkk223-3 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code RUBR_CLOPA _struct_ref.pdbx_db_accession P00268 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code MKKYTCTVCGYIYNPEDGDPDNGVNPGTDFKDIPDDWVCPLCGVGKDQFEEVEE _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1R0I _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 54 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P00268 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 54 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 54 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CD non-polymer . 'CADMIUM ION' ? 'Cd 2' 112.411 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1R0I _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 1.99 _exptl_crystal.density_percent_sol 37.70 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 4.0 _exptl_crystal_grow.pdbx_details 'sodium acetate, ammonium sulfate, pH 4.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 298 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'RIGAKU RAXIS IIC' _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details mirror # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU RU200' _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.5418 # _reflns.entry_id 1R0I _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.d_resolution_high 1.5 _reflns.d_resolution_low 50 _reflns.number_all 7544 _reflns.number_obs 7544 _reflns.percent_possible_obs 93.9 _reflns.pdbx_Rmerge_I_obs 0.111 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 14.5 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 3.9 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.5 _reflns_shell.d_res_low ? _reflns_shell.percent_possible_all 66.4 _reflns_shell.Rmerge_I_obs 0.12 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 1.5 _reflns_shell.pdbx_redundancy 1.6 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 1R0I _refine.ls_number_reflns_obs 7194 _refine.ls_number_reflns_all 7541 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 18.57 _refine.ls_d_res_high 1.50 _refine.ls_percent_reflns_obs 100.00 _refine.ls_R_factor_obs 0.14624 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.14627 _refine.ls_R_factor_R_free 0.14561 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.6 _refine.ls_number_reflns_R_free 347 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.968 _refine.correlation_coeff_Fo_to_Fc_free 0.972 _refine.B_iso_mean 14.633 _refine.aniso_B[1][1] -0.75 _refine.aniso_B[2][2] -0.75 _refine.aniso_B[3][3] 1.13 _refine.aniso_B[1][2] -0.38 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ;HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. The Rfree set was correctly assigned. The R(work) and R(free) values were 0.315 and 0.348, respectively at the commencement of the refinement. They converged during the refinement. Author has no explanation as to why the value for R(free) is lower than that for R(work). ; _refine.pdbx_starting_model 1iro _refine.pdbx_method_to_determine_struct 'FOURIER SYNTHESIS' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.066 _refine.pdbx_overall_ESU_R_Free 0.057 _refine.overall_SU_ML 0.038 _refine.overall_SU_B 0.991 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 423 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 1 _refine_hist.number_atoms_solvent 41 _refine_hist.number_atoms_total 465 _refine_hist.d_res_high 1.50 _refine_hist.d_res_low 18.57 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.007 0.022 ? 440 'X-RAY DIFFRACTION' ? r_bond_other_d 0.002 0.020 ? 371 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.252 1.978 ? 600 'X-RAY DIFFRACTION' ? r_angle_other_deg 0.775 3.000 ? 924 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 5.788 5.000 ? 52 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_chiral_restr 0.083 0.200 ? 63 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.004 0.020 ? 489 'X-RAY DIFFRACTION' ? r_gen_planes_other 0.002 0.020 ? 74 'X-RAY DIFFRACTION' ? r_nbd_refined 0.203 0.200 ? 74 'X-RAY DIFFRACTION' ? r_nbd_other 0.231 0.200 ? 379 'X-RAY DIFFRACTION' ? r_nbtor_other 0.085 0.200 ? 226 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.096 0.200 ? 20 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.203 0.200 ? 8 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other 0.257 0.200 ? 14 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.091 0.200 ? 7 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 0.624 1.500 ? 267 'X-RAY DIFFRACTION' ? r_mcangle_it 1.209 2.000 ? 440 'X-RAY DIFFRACTION' ? r_scbond_it 1.832 3.000 ? 173 'X-RAY DIFFRACTION' ? r_scangle_it 2.990 4.500 ? 158 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.502 _refine_ls_shell.d_res_low 1.540 _refine_ls_shell.number_reflns_R_work 366 _refine_ls_shell.R_factor_R_work 0.147 _refine_ls_shell.percent_reflns_obs ? _refine_ls_shell.R_factor_R_free 0.206 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 21 _refine_ls_shell.number_reflns_obs 366 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.R_factor_all ? # _struct.entry_id 1R0I _struct.title 'cadmium-substituted rubredoxin' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1R0I _struct_keywords.pdbx_keywords 'ELECTRON TRANSPORT' _struct_keywords.text 'rubredoxin, iron-sulfur, Clostridium pasteurianum, ELECTRON TRANSPORT' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASP A 19 ? GLY A 23 ? ASP A 19 GLY A 23 5 ? 5 HELX_P HELX_P2 2 ASP A 29 ? ILE A 33 ? ASP A 29 ILE A 33 5 ? 5 HELX_P HELX_P3 3 GLY A 45 ? ASP A 47 ? GLY A 45 ASP A 47 5 ? 3 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A CYS 6 SG ? ? ? 1_555 B CD . CD ? ? A CYS 6 A CD 101 1_555 ? ? ? ? ? ? ? 2.521 ? ? metalc2 metalc ? ? A CYS 9 SG ? ? ? 1_555 B CD . CD ? ? A CYS 9 A CD 101 1_555 ? ? ? ? ? ? ? 2.500 ? ? metalc3 metalc ? ? A CYS 39 SG ? ? ? 1_555 B CD . CD ? ? A CYS 39 A CD 101 1_555 ? ? ? ? ? ? ? 2.547 ? ? metalc4 metalc ? ? A CYS 42 SG ? ? ? 1_555 B CD . CD ? ? A CYS 42 A CD 101 1_555 ? ? ? ? ? ? ? 2.460 ? ? # _struct_conn_type.id metalc _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 3 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ILE A 12 ? TYR A 13 ? ILE A 12 TYR A 13 A 2 TYR A 4 ? CYS A 6 ? TYR A 4 CYS A 6 A 3 PHE A 49 ? GLU A 51 ? PHE A 49 GLU A 51 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O TYR A 13 ? O TYR A 13 N TYR A 4 ? N TYR A 4 A 2 3 N THR A 5 ? N THR A 5 O GLU A 50 ? O GLU A 50 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id CD _struct_site.pdbx_auth_seq_id 101 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 4 _struct_site.details 'BINDING SITE FOR RESIDUE CD A 101' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 CYS A 6 ? CYS A 6 . ? 1_555 ? 2 AC1 4 CYS A 9 ? CYS A 9 . ? 1_555 ? 3 AC1 4 CYS A 39 ? CYS A 39 . ? 1_555 ? 4 AC1 4 CYS A 42 ? CYS A 42 . ? 1_555 ? # _database_PDB_matrix.entry_id 1R0I _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1R0I _atom_sites.fract_transf_matrix[1][1] 0.015554 _atom_sites.fract_transf_matrix[1][2] 0.008980 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.017960 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.030706 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CD N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 1 MET MET A . n A 1 2 LYS 2 2 2 LYS LYS A . n A 1 3 LYS 3 3 3 LYS LYS A . n A 1 4 TYR 4 4 4 TYR TYR A . n A 1 5 THR 5 5 5 THR THR A . n A 1 6 CYS 6 6 6 CYS CYS A . n A 1 7 THR 7 7 7 THR THR A . n A 1 8 VAL 8 8 8 VAL VAL A . n A 1 9 CYS 9 9 9 CYS CYS A . n A 1 10 GLY 10 10 10 GLY GLY A . n A 1 11 TYR 11 11 11 TYR TYR A . n A 1 12 ILE 12 12 12 ILE ILE A . n A 1 13 TYR 13 13 13 TYR TYR A . n A 1 14 ASN 14 14 14 ASN ASN A . n A 1 15 PRO 15 15 15 PRO PRO A . n A 1 16 GLU 16 16 16 GLU GLU A . n A 1 17 ASP 17 17 17 ASP ASP A . n A 1 18 GLY 18 18 18 GLY GLY A . n A 1 19 ASP 19 19 19 ASP ASP A . n A 1 20 PRO 20 20 20 PRO PRO A . n A 1 21 ASP 21 21 21 ASP ASP A . n A 1 22 ASN 22 22 22 ASN ASN A . n A 1 23 GLY 23 23 23 GLY GLY A . n A 1 24 VAL 24 24 24 VAL VAL A . n A 1 25 ASN 25 25 25 ASN ASN A . n A 1 26 PRO 26 26 26 PRO PRO A . n A 1 27 GLY 27 27 27 GLY GLY A . n A 1 28 THR 28 28 28 THR THR A . n A 1 29 ASP 29 29 29 ASP ASP A . n A 1 30 PHE 30 30 30 PHE PHE A . n A 1 31 LYS 31 31 31 LYS LYS A . n A 1 32 ASP 32 32 32 ASP ASP A . n A 1 33 ILE 33 33 33 ILE ILE A . n A 1 34 PRO 34 34 34 PRO PRO A . n A 1 35 ASP 35 35 35 ASP ASP A . n A 1 36 ASP 36 36 36 ASP ASP A . n A 1 37 TRP 37 37 37 TRP TRP A . n A 1 38 VAL 38 38 38 VAL VAL A . n A 1 39 CYS 39 39 39 CYS CYS A . n A 1 40 PRO 40 40 40 PRO PRO A . n A 1 41 LEU 41 41 41 LEU LEU A . n A 1 42 CYS 42 42 42 CYS CYS A . n A 1 43 GLY 43 43 43 GLY GLY A . n A 1 44 VAL 44 44 44 VAL VAL A . n A 1 45 GLY 45 45 45 GLY GLY A . n A 1 46 LYS 46 46 46 LYS LYS A . n A 1 47 ASP 47 47 47 ASP ASP A . n A 1 48 GLN 48 48 48 GLN GLN A . n A 1 49 PHE 49 49 49 PHE PHE A . n A 1 50 GLU 50 50 50 GLU GLU A . n A 1 51 GLU 51 51 51 GLU GLU A . n A 1 52 VAL 52 52 52 VAL VAL A . n A 1 53 GLU 53 53 53 GLU GLU A . n A 1 54 GLU 54 54 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CD 1 101 1 CD CD A . C 3 HOH 1 102 1 HOH HOH A . C 3 HOH 2 103 2 HOH HOH A . C 3 HOH 3 104 3 HOH HOH A . C 3 HOH 4 105 4 HOH HOH A . C 3 HOH 5 106 5 HOH HOH A . C 3 HOH 6 107 6 HOH HOH A . C 3 HOH 7 108 7 HOH HOH A . C 3 HOH 8 109 8 HOH HOH A . C 3 HOH 9 110 9 HOH HOH A . C 3 HOH 10 111 10 HOH HOH A . C 3 HOH 11 112 11 HOH HOH A . C 3 HOH 12 113 12 HOH HOH A . C 3 HOH 13 114 13 HOH HOH A . C 3 HOH 14 115 14 HOH HOH A . C 3 HOH 15 116 15 HOH HOH A . C 3 HOH 16 117 16 HOH HOH A . C 3 HOH 17 118 17 HOH HOH A . C 3 HOH 18 119 18 HOH HOH A . C 3 HOH 19 120 19 HOH HOH A . C 3 HOH 20 121 20 HOH HOH A . C 3 HOH 21 122 21 HOH HOH A . C 3 HOH 22 123 22 HOH HOH A . C 3 HOH 23 124 23 HOH HOH A . C 3 HOH 24 125 24 HOH HOH A . C 3 HOH 25 126 25 HOH HOH A . C 3 HOH 26 127 26 HOH HOH A . C 3 HOH 27 128 27 HOH HOH A . C 3 HOH 28 129 28 HOH HOH A . C 3 HOH 29 130 29 HOH HOH A . C 3 HOH 30 131 30 HOH HOH A . C 3 HOH 31 132 31 HOH HOH A . C 3 HOH 32 133 32 HOH HOH A . C 3 HOH 33 134 33 HOH HOH A . C 3 HOH 34 135 34 HOH HOH A . C 3 HOH 35 136 35 HOH HOH A . C 3 HOH 36 137 36 HOH HOH A . C 3 HOH 37 138 37 HOH HOH A . C 3 HOH 38 139 38 HOH HOH A . C 3 HOH 39 140 39 HOH HOH A . C 3 HOH 40 141 40 HOH HOH A . C 3 HOH 41 142 41 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 SG ? A CYS 6 ? A CYS 6 ? 1_555 CD ? B CD . ? A CD 101 ? 1_555 SG ? A CYS 9 ? A CYS 9 ? 1_555 110.9 ? 2 SG ? A CYS 6 ? A CYS 6 ? 1_555 CD ? B CD . ? A CD 101 ? 1_555 SG ? A CYS 39 ? A CYS 39 ? 1_555 113.4 ? 3 SG ? A CYS 9 ? A CYS 9 ? 1_555 CD ? B CD . ? A CD 101 ? 1_555 SG ? A CYS 39 ? A CYS 39 ? 1_555 105.0 ? 4 SG ? A CYS 6 ? A CYS 6 ? 1_555 CD ? B CD . ? A CD 101 ? 1_555 SG ? A CYS 42 ? A CYS 42 ? 1_555 105.8 ? 5 SG ? A CYS 9 ? A CYS 9 ? 1_555 CD ? B CD . ? A CD 101 ? 1_555 SG ? A CYS 42 ? A CYS 42 ? 1_555 110.9 ? 6 SG ? A CYS 39 ? A CYS 39 ? 1_555 CD ? B CD . ? A CD 101 ? 1_555 SG ? A CYS 42 ? A CYS 42 ? 1_555 110.9 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2004-02-10 2 'Structure model' 1 1 2008-04-29 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2023-10-25 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' pdbx_initial_refinement_model 5 4 'Structure model' struct_conn 6 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 4 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 5 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 6 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 7 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 8 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 9 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 10 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 11 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 12 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 13 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 14 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' 15 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 16 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 17 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 18.9662 _pdbx_refine_tls.origin_y 25.1840 _pdbx_refine_tls.origin_z 17.9664 _pdbx_refine_tls.T[1][1] 0.0245 _pdbx_refine_tls.T[2][2] 0.0103 _pdbx_refine_tls.T[3][3] 0.0031 _pdbx_refine_tls.T[1][2] -0.0001 _pdbx_refine_tls.T[1][3] 0.0029 _pdbx_refine_tls.T[2][3] -0.0053 _pdbx_refine_tls.L[1][1] 2.0505 _pdbx_refine_tls.L[2][2] 1.0729 _pdbx_refine_tls.L[3][3] 0.8804 _pdbx_refine_tls.L[1][2] -0.2010 _pdbx_refine_tls.L[1][3] -0.2977 _pdbx_refine_tls.L[2][3] -0.0810 _pdbx_refine_tls.S[1][1] -0.0177 _pdbx_refine_tls.S[1][2] 0.0801 _pdbx_refine_tls.S[1][3] 0.0545 _pdbx_refine_tls.S[2][1] -0.0356 _pdbx_refine_tls.S[2][2] 0.0229 _pdbx_refine_tls.S[2][3] 0.0512 _pdbx_refine_tls.S[3][1] -0.0107 _pdbx_refine_tls.S[3][2] -0.0259 _pdbx_refine_tls.S[3][3] -0.0052 _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' # _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_label_asym_id A _pdbx_refine_tls_group.beg_label_seq_id 1 _pdbx_refine_tls_group.beg_auth_seq_id 1 _pdbx_refine_tls_group.end_label_asym_id A _pdbx_refine_tls_group.end_label_seq_id 53 _pdbx_refine_tls_group.end_auth_seq_id 53 _pdbx_refine_tls_group.selection ? _pdbx_refine_tls_group.beg_auth_asym_id A _pdbx_refine_tls_group.end_auth_asym_id A _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.selection_details ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.1.24 ? 1 DENZO 'data reduction' . ? 2 SCALEPACK 'data scaling' . ? 3 # _pdbx_unobs_or_zero_occ_residues.id 1 _pdbx_unobs_or_zero_occ_residues.PDB_model_num 1 _pdbx_unobs_or_zero_occ_residues.polymer_flag Y _pdbx_unobs_or_zero_occ_residues.occupancy_flag 1 _pdbx_unobs_or_zero_occ_residues.auth_asym_id A _pdbx_unobs_or_zero_occ_residues.auth_comp_id GLU _pdbx_unobs_or_zero_occ_residues.auth_seq_id 54 _pdbx_unobs_or_zero_occ_residues.PDB_ins_code ? _pdbx_unobs_or_zero_occ_residues.label_asym_id A _pdbx_unobs_or_zero_occ_residues.label_comp_id GLU _pdbx_unobs_or_zero_occ_residues.label_seq_id 54 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ASN N N N N 1 ASN CA C N S 2 ASN C C N N 3 ASN O O N N 4 ASN CB C N N 5 ASN CG C N N 6 ASN OD1 O N N 7 ASN ND2 N N N 8 ASN OXT O N N 9 ASN H H N N 10 ASN H2 H N N 11 ASN HA H N N 12 ASN HB2 H N N 13 ASN HB3 H N N 14 ASN HD21 H N N 15 ASN HD22 H N N 16 ASN HXT H N N 17 ASP N N N N 18 ASP CA C N S 19 ASP C C N N 20 ASP O O N N 21 ASP CB C N N 22 ASP CG C N N 23 ASP OD1 O N N 24 ASP OD2 O N N 25 ASP OXT O N N 26 ASP H H N N 27 ASP H2 H N N 28 ASP HA H N N 29 ASP HB2 H N N 30 ASP HB3 H N N 31 ASP HD2 H N N 32 ASP HXT H N N 33 CD CD CD N N 34 CYS N N N N 35 CYS CA C N R 36 CYS C C N N 37 CYS O O N N 38 CYS CB C N N 39 CYS SG S N N 40 CYS OXT O N N 41 CYS H H N N 42 CYS H2 H N N 43 CYS HA H N N 44 CYS HB2 H N N 45 CYS HB3 H N N 46 CYS HG H N N 47 CYS HXT H N N 48 GLN N N N N 49 GLN CA C N S 50 GLN C C N N 51 GLN O O N N 52 GLN CB C N N 53 GLN CG C N N 54 GLN CD C N N 55 GLN OE1 O N N 56 GLN NE2 N N N 57 GLN OXT O N N 58 GLN H H N N 59 GLN H2 H N N 60 GLN HA H N N 61 GLN HB2 H N N 62 GLN HB3 H N N 63 GLN HG2 H N N 64 GLN HG3 H N N 65 GLN HE21 H N N 66 GLN HE22 H N N 67 GLN HXT H N N 68 GLU N N N N 69 GLU CA C N S 70 GLU C C N N 71 GLU O O N N 72 GLU CB C N N 73 GLU CG C N N 74 GLU CD C N N 75 GLU OE1 O N N 76 GLU OE2 O N N 77 GLU OXT O N N 78 GLU H H N N 79 GLU H2 H N N 80 GLU HA H N N 81 GLU HB2 H N N 82 GLU HB3 H N N 83 GLU HG2 H N N 84 GLU HG3 H N N 85 GLU HE2 H N N 86 GLU HXT H N N 87 GLY N N N N 88 GLY CA C N N 89 GLY C C N N 90 GLY O O N N 91 GLY OXT O N N 92 GLY H H N N 93 GLY H2 H N N 94 GLY HA2 H N N 95 GLY HA3 H N N 96 GLY HXT H N N 97 HOH O O N N 98 HOH H1 H N N 99 HOH H2 H N N 100 ILE N N N N 101 ILE CA C N S 102 ILE C C N N 103 ILE O O N N 104 ILE CB C N S 105 ILE CG1 C N N 106 ILE CG2 C N N 107 ILE CD1 C N N 108 ILE OXT O N N 109 ILE H H N N 110 ILE H2 H N N 111 ILE HA H N N 112 ILE HB H N N 113 ILE HG12 H N N 114 ILE HG13 H N N 115 ILE HG21 H N N 116 ILE HG22 H N N 117 ILE HG23 H N N 118 ILE HD11 H N N 119 ILE HD12 H N N 120 ILE HD13 H N N 121 ILE HXT H N N 122 LEU N N N N 123 LEU CA C N S 124 LEU C C N N 125 LEU O O N N 126 LEU CB C N N 127 LEU CG C N N 128 LEU CD1 C N N 129 LEU CD2 C N N 130 LEU OXT O N N 131 LEU H H N N 132 LEU H2 H N N 133 LEU HA H N N 134 LEU HB2 H N N 135 LEU HB3 H N N 136 LEU HG H N N 137 LEU HD11 H N N 138 LEU HD12 H N N 139 LEU HD13 H N N 140 LEU HD21 H N N 141 LEU HD22 H N N 142 LEU HD23 H N N 143 LEU HXT H N N 144 LYS N N N N 145 LYS CA C N S 146 LYS C C N N 147 LYS O O N N 148 LYS CB C N N 149 LYS CG C N N 150 LYS CD C N N 151 LYS CE C N N 152 LYS NZ N N N 153 LYS OXT O N N 154 LYS H H N N 155 LYS H2 H N N 156 LYS HA H N N 157 LYS HB2 H N N 158 LYS HB3 H N N 159 LYS HG2 H N N 160 LYS HG3 H N N 161 LYS HD2 H N N 162 LYS HD3 H N N 163 LYS HE2 H N N 164 LYS HE3 H N N 165 LYS HZ1 H N N 166 LYS HZ2 H N N 167 LYS HZ3 H N N 168 LYS HXT H N N 169 MET N N N N 170 MET CA C N S 171 MET C C N N 172 MET O O N N 173 MET CB C N N 174 MET CG C N N 175 MET SD S N N 176 MET CE C N N 177 MET OXT O N N 178 MET H H N N 179 MET H2 H N N 180 MET HA H N N 181 MET HB2 H N N 182 MET HB3 H N N 183 MET HG2 H N N 184 MET HG3 H N N 185 MET HE1 H N N 186 MET HE2 H N N 187 MET HE3 H N N 188 MET HXT H N N 189 PHE N N N N 190 PHE CA C N S 191 PHE C C N N 192 PHE O O N N 193 PHE CB C N N 194 PHE CG C Y N 195 PHE CD1 C Y N 196 PHE CD2 C Y N 197 PHE CE1 C Y N 198 PHE CE2 C Y N 199 PHE CZ C Y N 200 PHE OXT O N N 201 PHE H H N N 202 PHE H2 H N N 203 PHE HA H N N 204 PHE HB2 H N N 205 PHE HB3 H N N 206 PHE HD1 H N N 207 PHE HD2 H N N 208 PHE HE1 H N N 209 PHE HE2 H N N 210 PHE HZ H N N 211 PHE HXT H N N 212 PRO N N N N 213 PRO CA C N S 214 PRO C C N N 215 PRO O O N N 216 PRO CB C N N 217 PRO CG C N N 218 PRO CD C N N 219 PRO OXT O N N 220 PRO H H N N 221 PRO HA H N N 222 PRO HB2 H N N 223 PRO HB3 H N N 224 PRO HG2 H N N 225 PRO HG3 H N N 226 PRO HD2 H N N 227 PRO HD3 H N N 228 PRO HXT H N N 229 THR N N N N 230 THR CA C N S 231 THR C C N N 232 THR O O N N 233 THR CB C N R 234 THR OG1 O N N 235 THR CG2 C N N 236 THR OXT O N N 237 THR H H N N 238 THR H2 H N N 239 THR HA H N N 240 THR HB H N N 241 THR HG1 H N N 242 THR HG21 H N N 243 THR HG22 H N N 244 THR HG23 H N N 245 THR HXT H N N 246 TRP N N N N 247 TRP CA C N S 248 TRP C C N N 249 TRP O O N N 250 TRP CB C N N 251 TRP CG C Y N 252 TRP CD1 C Y N 253 TRP CD2 C Y N 254 TRP NE1 N Y N 255 TRP CE2 C Y N 256 TRP CE3 C Y N 257 TRP CZ2 C Y N 258 TRP CZ3 C Y N 259 TRP CH2 C Y N 260 TRP OXT O N N 261 TRP H H N N 262 TRP H2 H N N 263 TRP HA H N N 264 TRP HB2 H N N 265 TRP HB3 H N N 266 TRP HD1 H N N 267 TRP HE1 H N N 268 TRP HE3 H N N 269 TRP HZ2 H N N 270 TRP HZ3 H N N 271 TRP HH2 H N N 272 TRP HXT H N N 273 TYR N N N N 274 TYR CA C N S 275 TYR C C N N 276 TYR O O N N 277 TYR CB C N N 278 TYR CG C Y N 279 TYR CD1 C Y N 280 TYR CD2 C Y N 281 TYR CE1 C Y N 282 TYR CE2 C Y N 283 TYR CZ C Y N 284 TYR OH O N N 285 TYR OXT O N N 286 TYR H H N N 287 TYR H2 H N N 288 TYR HA H N N 289 TYR HB2 H N N 290 TYR HB3 H N N 291 TYR HD1 H N N 292 TYR HD2 H N N 293 TYR HE1 H N N 294 TYR HE2 H N N 295 TYR HH H N N 296 TYR HXT H N N 297 VAL N N N N 298 VAL CA C N S 299 VAL C C N N 300 VAL O O N N 301 VAL CB C N N 302 VAL CG1 C N N 303 VAL CG2 C N N 304 VAL OXT O N N 305 VAL H H N N 306 VAL H2 H N N 307 VAL HA H N N 308 VAL HB H N N 309 VAL HG11 H N N 310 VAL HG12 H N N 311 VAL HG13 H N N 312 VAL HG21 H N N 313 VAL HG22 H N N 314 VAL HG23 H N N 315 VAL HXT H N N 316 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ASN N CA sing N N 1 ASN N H sing N N 2 ASN N H2 sing N N 3 ASN CA C sing N N 4 ASN CA CB sing N N 5 ASN CA HA sing N N 6 ASN C O doub N N 7 ASN C OXT sing N N 8 ASN CB CG sing N N 9 ASN CB HB2 sing N N 10 ASN CB HB3 sing N N 11 ASN CG OD1 doub N N 12 ASN CG ND2 sing N N 13 ASN ND2 HD21 sing N N 14 ASN ND2 HD22 sing N N 15 ASN OXT HXT sing N N 16 ASP N CA sing N N 17 ASP N H sing N N 18 ASP N H2 sing N N 19 ASP CA C sing N N 20 ASP CA CB sing N N 21 ASP CA HA sing N N 22 ASP C O doub N N 23 ASP C OXT sing N N 24 ASP CB CG sing N N 25 ASP CB HB2 sing N N 26 ASP CB HB3 sing N N 27 ASP CG OD1 doub N N 28 ASP CG OD2 sing N N 29 ASP OD2 HD2 sing N N 30 ASP OXT HXT sing N N 31 CYS N CA sing N N 32 CYS N H sing N N 33 CYS N H2 sing N N 34 CYS CA C sing N N 35 CYS CA CB sing N N 36 CYS CA HA sing N N 37 CYS C O doub N N 38 CYS C OXT sing N N 39 CYS CB SG sing N N 40 CYS CB HB2 sing N N 41 CYS CB HB3 sing N N 42 CYS SG HG sing N N 43 CYS OXT HXT sing N N 44 GLN N CA sing N N 45 GLN N H sing N N 46 GLN N H2 sing N N 47 GLN CA C sing N N 48 GLN CA CB sing N N 49 GLN CA HA sing N N 50 GLN C O doub N N 51 GLN C OXT sing N N 52 GLN CB CG sing N N 53 GLN CB HB2 sing N N 54 GLN CB HB3 sing N N 55 GLN CG CD sing N N 56 GLN CG HG2 sing N N 57 GLN CG HG3 sing N N 58 GLN CD OE1 doub N N 59 GLN CD NE2 sing N N 60 GLN NE2 HE21 sing N N 61 GLN NE2 HE22 sing N N 62 GLN OXT HXT sing N N 63 GLU N CA sing N N 64 GLU N H sing N N 65 GLU N H2 sing N N 66 GLU CA C sing N N 67 GLU CA CB sing N N 68 GLU CA HA sing N N 69 GLU C O doub N N 70 GLU C OXT sing N N 71 GLU CB CG sing N N 72 GLU CB HB2 sing N N 73 GLU CB HB3 sing N N 74 GLU CG CD sing N N 75 GLU CG HG2 sing N N 76 GLU CG HG3 sing N N 77 GLU CD OE1 doub N N 78 GLU CD OE2 sing N N 79 GLU OE2 HE2 sing N N 80 GLU OXT HXT sing N N 81 GLY N CA sing N N 82 GLY N H sing N N 83 GLY N H2 sing N N 84 GLY CA C sing N N 85 GLY CA HA2 sing N N 86 GLY CA HA3 sing N N 87 GLY C O doub N N 88 GLY C OXT sing N N 89 GLY OXT HXT sing N N 90 HOH O H1 sing N N 91 HOH O H2 sing N N 92 ILE N CA sing N N 93 ILE N H sing N N 94 ILE N H2 sing N N 95 ILE CA C sing N N 96 ILE CA CB sing N N 97 ILE CA HA sing N N 98 ILE C O doub N N 99 ILE C OXT sing N N 100 ILE CB CG1 sing N N 101 ILE CB CG2 sing N N 102 ILE CB HB sing N N 103 ILE CG1 CD1 sing N N 104 ILE CG1 HG12 sing N N 105 ILE CG1 HG13 sing N N 106 ILE CG2 HG21 sing N N 107 ILE CG2 HG22 sing N N 108 ILE CG2 HG23 sing N N 109 ILE CD1 HD11 sing N N 110 ILE CD1 HD12 sing N N 111 ILE CD1 HD13 sing N N 112 ILE OXT HXT sing N N 113 LEU N CA sing N N 114 LEU N H sing N N 115 LEU N H2 sing N N 116 LEU CA C sing N N 117 LEU CA CB sing N N 118 LEU CA HA sing N N 119 LEU C O doub N N 120 LEU C OXT sing N N 121 LEU CB CG sing N N 122 LEU CB HB2 sing N N 123 LEU CB HB3 sing N N 124 LEU CG CD1 sing N N 125 LEU CG CD2 sing N N 126 LEU CG HG sing N N 127 LEU CD1 HD11 sing N N 128 LEU CD1 HD12 sing N N 129 LEU CD1 HD13 sing N N 130 LEU CD2 HD21 sing N N 131 LEU CD2 HD22 sing N N 132 LEU CD2 HD23 sing N N 133 LEU OXT HXT sing N N 134 LYS N CA sing N N 135 LYS N H sing N N 136 LYS N H2 sing N N 137 LYS CA C sing N N 138 LYS CA CB sing N N 139 LYS CA HA sing N N 140 LYS C O doub N N 141 LYS C OXT sing N N 142 LYS CB CG sing N N 143 LYS CB HB2 sing N N 144 LYS CB HB3 sing N N 145 LYS CG CD sing N N 146 LYS CG HG2 sing N N 147 LYS CG HG3 sing N N 148 LYS CD CE sing N N 149 LYS CD HD2 sing N N 150 LYS CD HD3 sing N N 151 LYS CE NZ sing N N 152 LYS CE HE2 sing N N 153 LYS CE HE3 sing N N 154 LYS NZ HZ1 sing N N 155 LYS NZ HZ2 sing N N 156 LYS NZ HZ3 sing N N 157 LYS OXT HXT sing N N 158 MET N CA sing N N 159 MET N H sing N N 160 MET N H2 sing N N 161 MET CA C sing N N 162 MET CA CB sing N N 163 MET CA HA sing N N 164 MET C O doub N N 165 MET C OXT sing N N 166 MET CB CG sing N N 167 MET CB HB2 sing N N 168 MET CB HB3 sing N N 169 MET CG SD sing N N 170 MET CG HG2 sing N N 171 MET CG HG3 sing N N 172 MET SD CE sing N N 173 MET CE HE1 sing N N 174 MET CE HE2 sing N N 175 MET CE HE3 sing N N 176 MET OXT HXT sing N N 177 PHE N CA sing N N 178 PHE N H sing N N 179 PHE N H2 sing N N 180 PHE CA C sing N N 181 PHE CA CB sing N N 182 PHE CA HA sing N N 183 PHE C O doub N N 184 PHE C OXT sing N N 185 PHE CB CG sing N N 186 PHE CB HB2 sing N N 187 PHE CB HB3 sing N N 188 PHE CG CD1 doub Y N 189 PHE CG CD2 sing Y N 190 PHE CD1 CE1 sing Y N 191 PHE CD1 HD1 sing N N 192 PHE CD2 CE2 doub Y N 193 PHE CD2 HD2 sing N N 194 PHE CE1 CZ doub Y N 195 PHE CE1 HE1 sing N N 196 PHE CE2 CZ sing Y N 197 PHE CE2 HE2 sing N N 198 PHE CZ HZ sing N N 199 PHE OXT HXT sing N N 200 PRO N CA sing N N 201 PRO N CD sing N N 202 PRO N H sing N N 203 PRO CA C sing N N 204 PRO CA CB sing N N 205 PRO CA HA sing N N 206 PRO C O doub N N 207 PRO C OXT sing N N 208 PRO CB CG sing N N 209 PRO CB HB2 sing N N 210 PRO CB HB3 sing N N 211 PRO CG CD sing N N 212 PRO CG HG2 sing N N 213 PRO CG HG3 sing N N 214 PRO CD HD2 sing N N 215 PRO CD HD3 sing N N 216 PRO OXT HXT sing N N 217 THR N CA sing N N 218 THR N H sing N N 219 THR N H2 sing N N 220 THR CA C sing N N 221 THR CA CB sing N N 222 THR CA HA sing N N 223 THR C O doub N N 224 THR C OXT sing N N 225 THR CB OG1 sing N N 226 THR CB CG2 sing N N 227 THR CB HB sing N N 228 THR OG1 HG1 sing N N 229 THR CG2 HG21 sing N N 230 THR CG2 HG22 sing N N 231 THR CG2 HG23 sing N N 232 THR OXT HXT sing N N 233 TRP N CA sing N N 234 TRP N H sing N N 235 TRP N H2 sing N N 236 TRP CA C sing N N 237 TRP CA CB sing N N 238 TRP CA HA sing N N 239 TRP C O doub N N 240 TRP C OXT sing N N 241 TRP CB CG sing N N 242 TRP CB HB2 sing N N 243 TRP CB HB3 sing N N 244 TRP CG CD1 doub Y N 245 TRP CG CD2 sing Y N 246 TRP CD1 NE1 sing Y N 247 TRP CD1 HD1 sing N N 248 TRP CD2 CE2 doub Y N 249 TRP CD2 CE3 sing Y N 250 TRP NE1 CE2 sing Y N 251 TRP NE1 HE1 sing N N 252 TRP CE2 CZ2 sing Y N 253 TRP CE3 CZ3 doub Y N 254 TRP CE3 HE3 sing N N 255 TRP CZ2 CH2 doub Y N 256 TRP CZ2 HZ2 sing N N 257 TRP CZ3 CH2 sing Y N 258 TRP CZ3 HZ3 sing N N 259 TRP CH2 HH2 sing N N 260 TRP OXT HXT sing N N 261 TYR N CA sing N N 262 TYR N H sing N N 263 TYR N H2 sing N N 264 TYR CA C sing N N 265 TYR CA CB sing N N 266 TYR CA HA sing N N 267 TYR C O doub N N 268 TYR C OXT sing N N 269 TYR CB CG sing N N 270 TYR CB HB2 sing N N 271 TYR CB HB3 sing N N 272 TYR CG CD1 doub Y N 273 TYR CG CD2 sing Y N 274 TYR CD1 CE1 sing Y N 275 TYR CD1 HD1 sing N N 276 TYR CD2 CE2 doub Y N 277 TYR CD2 HD2 sing N N 278 TYR CE1 CZ doub Y N 279 TYR CE1 HE1 sing N N 280 TYR CE2 CZ sing Y N 281 TYR CE2 HE2 sing N N 282 TYR CZ OH sing N N 283 TYR OH HH sing N N 284 TYR OXT HXT sing N N 285 VAL N CA sing N N 286 VAL N H sing N N 287 VAL N H2 sing N N 288 VAL CA C sing N N 289 VAL CA CB sing N N 290 VAL CA HA sing N N 291 VAL C O doub N N 292 VAL C OXT sing N N 293 VAL CB CG1 sing N N 294 VAL CB CG2 sing N N 295 VAL CB HB sing N N 296 VAL CG1 HG11 sing N N 297 VAL CG1 HG12 sing N N 298 VAL CG1 HG13 sing N N 299 VAL CG2 HG21 sing N N 300 VAL CG2 HG22 sing N N 301 VAL CG2 HG23 sing N N 302 VAL OXT HXT sing N N 303 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'CADMIUM ION' CD 3 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1IRO _pdbx_initial_refinement_model.details ? #