data_1RAU # _entry.id 1RAU # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.355 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1RAU pdb_00001rau 10.2210/pdb1rau/pdb WWPDB D_1000175979 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1RAU _pdbx_database_status.recvd_initial_deposition_date 1993-07-29 _pdbx_database_status.deposit_site ? _pdbx_database_status.process_site BNL _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Cheong, C.' 1 'Moore, P.B.' 2 # _citation.id primary _citation.title 'Solution structure of an unusually stable RNA tetraplex containing G- and U-quartet structures.' _citation.journal_abbrev Biochemistry _citation.journal_volume 31 _citation.page_first 8406 _citation.page_last 8414 _citation.year 1992 _citation.journal_id_ASTM BICHAW _citation.country US _citation.journal_id_ISSN 0006-2960 _citation.journal_id_CSD 0033 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 1382577 _citation.pdbx_database_id_DOI 10.1021/bi00151a003 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Cheong, C.' 1 ? primary 'Moore, P.B.' 2 ? # _cell.entry_id 1RAU _cell.length_a 1.000 _cell.length_b 1.000 _cell.length_c 1.000 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1RAU _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 # _entity.id 1 _entity.type polymer _entity.src_method syn _entity.pdbx_description ;RNA (5'-R(*UP*GP*GP*GP*GP*U)-3') ; _entity.formula_weight 1948.197 _entity.pdbx_number_of_molecules 4 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_keywords.entity_id 1 _entity_keywords.text 'RIBONUCLEIC ACID' # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code UGGGGU _entity_poly.pdbx_seq_one_letter_code_can UGGGGU _entity_poly.pdbx_strand_id A,B,C,D _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 U n 1 2 G n 1 3 G n 1 4 G n 1 5 G n 1 6 U n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'CHEMICALLY SYNTHESIZED' # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 1RAU _struct_ref.pdbx_db_accession 1RAU _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1RAU A 1 ? 6 ? 1RAU 1 ? 6 ? 1 6 2 1 1RAU B 1 ? 6 ? 1RAU 1 ? 6 ? 1 6 3 1 1RAU C 1 ? 6 ? 1RAU 1 ? 6 ? 1 6 4 1 1RAU D 1 ? 6 ? 1RAU 1 ? 6 ? 1 6 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_nmr_exptl_sample_conditions.conditions_id _pdbx_nmr_exptl_sample_conditions.temperature _pdbx_nmr_exptl_sample_conditions.pressure _pdbx_nmr_exptl_sample_conditions.pH _pdbx_nmr_exptl_sample_conditions.ionic_strength _pdbx_nmr_exptl_sample_conditions.pressure_units _pdbx_nmr_exptl_sample_conditions.temperature_units 1 278 ? 6.7 ? . K 2 313 ? 5.2 ? . K # loop_ _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solvent_system 1 ? 'H2O AND 100% D2O' 2 ? 'H2O AND 100% D2O' # _pdbx_nmr_refine.entry_id 1RAU _pdbx_nmr_refine.method ? _pdbx_nmr_refine.details ;STRUCTURE CALCULATION: MOLECULAR DYNAMICS AND ENERGY MINIMIZATION USING RELAXATION MATRIX ROUTINE IN X-PLOR CONSTRAINTS: TOTAL 428 DISTANCE CONSTRAINTS (ABOUT 18/NUCLEOTIDE) 212 FROM INTRANUCLEOTIDE NOES 112 FROM INTERNUCLEOTIDE NOES 36 FROM HYDROGEN BONDS 8 FROM EXCHANGEABLE PROTON NOES 60 DERIVED FROM BACKBONE TORSION ANGLES DIHEDRAL ANGLE CONSTRAINTS 104 BACKBONE AND GLYCOSIDIC TORSION ANGLES SUGAR RING TORSION ANGLES CONSTRAINTS TO MAKE QUARTET PLANES PLANAR 4-FOLD ROTATIONAL SYMMETRY CONSTRAINTS QUALITY OF STRUCTURE NUMBER OF REFINED STRUCTURES: 8 RMS DEVIATION: 0.71A FOR ALL HEAVY ATOMS ; _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_details.entry_id 1RAU _pdbx_nmr_details.text ;ATA COLLECTION PARAMETERS: FREQUENCY: 500 MHZ FOR 1H, 202 MHZ FOR 31P SAMPLE TUBE: 5 MM SPECTRA FOR ASSIGNMENTS: HOMONUCLEAR PROTON 2D, 1H-31P COSY; SPECTRA FOR CONSTRAINTS: NOESY, DQF-COSY, 1H-31P COSY MOLECULAR CHARACTERISTICS: OLIGOMER STATE: TETRAMERIC MOLECULAR WEIGHT: 13 KD NUCLEOTIDES: 24 SOLUTION CONDITIONS: SOLVENT: H2O AND 100% D2O TEMPERATURES: 5C AND 40C PH: 6.7 AND 5.2 STRAND CONCENTRATION: 2.2 MM ADDITIVES: 10 MM POTASSIUM PHOSPHATE, 50 MM KCL, 0.5 MM EDTA OR 18 MM POTASSIUM PHOSPHATE, 88 MM KCL, 0.9 MM EDTA ; # _pdbx_nmr_ensemble.entry_id 1RAU _pdbx_nmr_ensemble.conformers_calculated_total_number 8 _pdbx_nmr_ensemble.conformers_submitted_total_number 1 _pdbx_nmr_ensemble.conformer_selection_criteria ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_software.name X-PLOR _pdbx_nmr_software.version ? _pdbx_nmr_software.classification refinement _pdbx_nmr_software.authors BRUNGER _pdbx_nmr_software.ordinal 1 # _exptl.entry_id 1RAU _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _struct.entry_id 1RAU _struct.title 'SOLUTION STRUCTURE OF AN UNUSUALLY STABLE RNA TETRAPLEX CONTAINING G-AND U-QUARTET STRUCTURES' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1RAU _struct_keywords.pdbx_keywords RNA _struct_keywords.text 'RNA, TETRAPLEX' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? # _struct_biol.id 1 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A G 2 N1 ? ? ? 1_555 B G 2 O6 ? ? A G 2 B G 2 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog2 hydrog ? ? A G 2 N2 ? ? ? 1_555 B G 2 N7 ? ? A G 2 B G 2 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog3 hydrog ? ? A G 2 N7 ? ? ? 1_555 D G 2 N2 ? ? A G 2 D G 2 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog4 hydrog ? ? A G 2 O6 ? ? ? 1_555 D G 2 N1 ? ? A G 2 D G 2 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog5 hydrog ? ? A G 3 N1 ? ? ? 1_555 B G 3 O6 ? ? A G 3 B G 3 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog6 hydrog ? ? A G 3 N2 ? ? ? 1_555 B G 3 N7 ? ? A G 3 B G 3 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog7 hydrog ? ? A G 3 N7 ? ? ? 1_555 D G 3 N2 ? ? A G 3 D G 3 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog8 hydrog ? ? A G 3 O6 ? ? ? 1_555 D G 3 N1 ? ? A G 3 D G 3 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog9 hydrog ? ? A G 4 N1 ? ? ? 1_555 B G 4 O6 ? ? A G 4 B G 4 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog10 hydrog ? ? A G 4 N2 ? ? ? 1_555 B G 4 N7 ? ? A G 4 B G 4 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog11 hydrog ? ? A G 4 N7 ? ? ? 1_555 D G 4 N2 ? ? A G 4 D G 4 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog12 hydrog ? ? A G 4 O6 ? ? ? 1_555 D G 4 N1 ? ? A G 4 D G 4 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog13 hydrog ? ? A G 5 N1 ? ? ? 1_555 B G 5 O6 ? ? A G 5 B G 5 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog14 hydrog ? ? A G 5 N2 ? ? ? 1_555 B G 5 N7 ? ? A G 5 B G 5 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog15 hydrog ? ? A G 5 N1 ? ? ? 1_555 B U 6 O4 ? ? A G 5 B U 6 1_555 ? ? ? ? ? ? 'G-U MISPAIR' ? ? ? hydrog16 hydrog ? ? A G 5 N7 ? ? ? 1_555 D G 5 N2 ? ? A G 5 D G 5 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog17 hydrog ? ? A G 5 O6 ? ? ? 1_555 D G 5 N1 ? ? A G 5 D G 5 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog18 hydrog ? ? A U 6 N3 ? ? ? 1_555 B U 6 O4 ? ? A U 6 B U 6 1_555 ? ? ? ? ? ? 'U-U MISPAIR' ? ? ? hydrog19 hydrog ? ? A U 6 O4 ? ? ? 1_555 D G 5 N1 ? ? A U 6 D G 5 1_555 ? ? ? ? ? ? 'U-G MISPAIR' ? ? ? hydrog20 hydrog ? ? A U 6 O4 ? ? ? 1_555 D U 6 N3 ? ? A U 6 D U 6 1_555 ? ? ? ? ? ? 'U-U MISPAIR' ? ? ? hydrog21 hydrog ? ? B G 2 N1 ? ? ? 1_555 C G 2 O6 ? ? B G 2 C G 2 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog22 hydrog ? ? B G 2 N2 ? ? ? 1_555 C G 2 N7 ? ? B G 2 C G 2 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog23 hydrog ? ? B G 3 N1 ? ? ? 1_555 C G 3 O6 ? ? B G 3 C G 3 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog24 hydrog ? ? B G 3 N2 ? ? ? 1_555 C G 3 N7 ? ? B G 3 C G 3 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog25 hydrog ? ? B G 4 N1 ? ? ? 1_555 C G 4 O6 ? ? B G 4 C G 4 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog26 hydrog ? ? B G 4 N2 ? ? ? 1_555 C G 4 N7 ? ? B G 4 C G 4 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog27 hydrog ? ? B G 5 N1 ? ? ? 1_555 C G 5 O6 ? ? B G 5 C G 5 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog28 hydrog ? ? B G 5 N2 ? ? ? 1_555 C G 5 N7 ? ? B G 5 C G 5 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog29 hydrog ? ? B G 5 N1 ? ? ? 1_555 C U 6 O4 ? ? B G 5 C U 6 1_555 ? ? ? ? ? ? 'G-U MISPAIR' ? ? ? hydrog30 hydrog ? ? B U 6 N3 ? ? ? 1_555 C U 6 O4 ? ? B U 6 C U 6 1_555 ? ? ? ? ? ? 'U-U MISPAIR' ? ? ? hydrog31 hydrog ? ? C G 2 N1 ? ? ? 1_555 D G 2 O6 ? ? C G 2 D G 2 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog32 hydrog ? ? C G 2 N2 ? ? ? 1_555 D G 2 N7 ? ? C G 2 D G 2 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog33 hydrog ? ? C G 3 N1 ? ? ? 1_555 D G 3 O6 ? ? C G 3 D G 3 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog34 hydrog ? ? C G 3 N2 ? ? ? 1_555 D G 3 N7 ? ? C G 3 D G 3 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog35 hydrog ? ? C G 4 N1 ? ? ? 1_555 D G 4 O6 ? ? C G 4 D G 4 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog36 hydrog ? ? C G 4 N2 ? ? ? 1_555 D G 4 N7 ? ? C G 4 D G 4 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog37 hydrog ? ? C G 5 N1 ? ? ? 1_555 D G 5 O6 ? ? C G 5 D G 5 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog38 hydrog ? ? C G 5 N2 ? ? ? 1_555 D G 5 N7 ? ? C G 5 D G 5 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog39 hydrog ? ? C G 5 N1 ? ? ? 1_555 D U 6 O4 ? ? C G 5 D U 6 1_555 ? ? ? ? ? ? 'G-U MISPAIR' ? ? ? hydrog40 hydrog ? ? C U 6 N3 ? ? ? 1_555 D U 6 O4 ? ? C U 6 D U 6 1_555 ? ? ? ? ? ? 'U-U MISPAIR' ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # _database_PDB_matrix.entry_id 1RAU _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1RAU _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 U 1 1 1 U U A . n A 1 2 G 2 2 2 G G A . n A 1 3 G 3 3 3 G G A . n A 1 4 G 4 4 4 G G A . n A 1 5 G 5 5 5 G G A . n A 1 6 U 6 6 6 U U A . n B 1 1 U 1 1 1 U U B . n B 1 2 G 2 2 2 G G B . n B 1 3 G 3 3 3 G G B . n B 1 4 G 4 4 4 G G B . n B 1 5 G 5 5 5 G G B . n B 1 6 U 6 6 6 U U B . n C 1 1 U 1 1 1 U U C . n C 1 2 G 2 2 2 G G C . n C 1 3 G 3 3 3 G G C . n C 1 4 G 4 4 4 G G C . n C 1 5 G 5 5 5 G G C . n C 1 6 U 6 6 6 U U C . n D 1 1 U 1 1 1 U U D . n D 1 2 G 2 2 2 G G D . n D 1 3 G 3 3 3 G G D . n D 1 4 G 4 4 4 G G D . n D 1 5 G 5 5 5 G G D . n D 1 6 U 6 6 6 U U D . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1994-01-31 2 'Structure model' 1 1 2008-03-24 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-03-02 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Database references' 4 4 'Structure model' 'Derived calculations' 5 4 'Structure model' Other # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_database_status 3 4 'Structure model' pdbx_struct_assembly 4 4 'Structure model' pdbx_struct_oper_list # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_database_status.process_site' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal X-PLOR 'model building' . ? 1 X-PLOR refinement . ? 2 X-PLOR phasing . ? 3 # loop_ _pdbx_nmr_exptl_sample.solution_id _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling 1 'POTASSIUM PHOSPHATE' 10 mM ? 1 KCL 50 mM ? 1 EDTA .5 mM ? 2 'POTASSIUM PHOSPHATE' 18 mM ? 2 KCL 88 mM ? 2 EDTA .9 mM ? # _pdbx_nmr_constraints.entry_id 1RAU _pdbx_nmr_constraints.NOE_constraints_total 428 _pdbx_nmr_constraints.NOE_intraresidue_total_count 212 _pdbx_nmr_constraints.NOE_sequential_total_count ? _pdbx_nmr_constraints.NOE_medium_range_total_count ? _pdbx_nmr_constraints.NOE_long_range_total_count ? _pdbx_nmr_constraints.protein_phi_angle_constraints_total_count ? _pdbx_nmr_constraints.protein_psi_angle_constraints_total_count ? _pdbx_nmr_constraints.protein_chi_angle_constraints_total_count ? _pdbx_nmr_constraints.protein_other_angle_constraints_total_count ? _pdbx_nmr_constraints.NOE_interproton_distance_evaluation ? _pdbx_nmr_constraints.NOE_pseudoatom_corrections ? _pdbx_nmr_constraints.NOE_motional_averaging_correction ? _pdbx_nmr_constraints.hydrogen_bond_constraints_total_count 36 _pdbx_nmr_constraints.disulfide_bond_constraints_total_count ? _pdbx_nmr_constraints.NA_alpha-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_beta-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_gamma-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_delta-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_epsilon-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_chi-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_other-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_sugar_pucker_constraints_total_count ? # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A U 1 ? ? "C1'" A U 1 ? ? N1 A U 1 ? ? 113.29 108.50 4.79 0.70 N 2 1 N7 A G 2 ? ? C8 A G 2 ? ? N9 A G 2 ? ? 116.57 113.10 3.47 0.50 N 3 1 C8 A G 2 ? ? N9 A G 2 ? ? C4 A G 2 ? ? 103.60 106.40 -2.80 0.40 N 4 1 N7 A G 4 ? ? C8 A G 4 ? ? N9 A G 4 ? ? 116.39 113.10 3.29 0.50 N 5 1 C8 A G 4 ? ? N9 A G 4 ? ? C4 A G 4 ? ? 103.83 106.40 -2.57 0.40 N 6 1 N9 A G 5 ? ? "C1'" A G 5 ? ? "C2'" A G 5 ? ? 101.40 112.00 -10.60 1.10 N 7 1 "C5'" A U 6 ? ? "C4'" A U 6 ? ? "C3'" A U 6 ? ? 105.75 115.20 -9.45 1.40 N 8 1 "C5'" A U 6 ? ? "C4'" A U 6 ? ? "O4'" A U 6 ? ? 117.64 109.80 7.84 0.90 N 9 1 "O4'" A U 6 ? ? "C1'" A U 6 ? ? "C2'" A U 6 ? ? 98.62 105.80 -7.18 1.00 N 10 1 "O4'" A U 6 ? ? "C1'" A U 6 ? ? N1 A U 6 ? ? 122.07 108.50 13.57 0.70 N 11 1 "O4'" B U 1 ? ? "C1'" B U 1 ? ? N1 B U 1 ? ? 113.22 108.50 4.72 0.70 N 12 1 N7 B G 2 ? ? C8 B G 2 ? ? N9 B G 2 ? ? 116.50 113.10 3.40 0.50 N 13 1 C8 B G 2 ? ? N9 B G 2 ? ? C4 B G 2 ? ? 103.63 106.40 -2.77 0.40 N 14 1 N7 B G 4 ? ? C8 B G 4 ? ? N9 B G 4 ? ? 116.40 113.10 3.30 0.50 N 15 1 C8 B G 4 ? ? N9 B G 4 ? ? C4 B G 4 ? ? 103.84 106.40 -2.56 0.40 N 16 1 N9 B G 5 ? ? "C1'" B G 5 ? ? "C2'" B G 5 ? ? 101.46 112.00 -10.54 1.10 N 17 1 "C5'" B U 6 ? ? "C4'" B U 6 ? ? "C3'" B U 6 ? ? 105.79 115.20 -9.41 1.40 N 18 1 "C5'" B U 6 ? ? "C4'" B U 6 ? ? "O4'" B U 6 ? ? 117.64 109.80 7.84 0.90 N 19 1 "O4'" B U 6 ? ? "C1'" B U 6 ? ? "C2'" B U 6 ? ? 98.58 105.80 -7.22 1.00 N 20 1 "O4'" B U 6 ? ? "C1'" B U 6 ? ? N1 B U 6 ? ? 122.19 108.50 13.69 0.70 N 21 1 "O4'" C U 1 ? ? "C1'" C U 1 ? ? N1 C U 1 ? ? 113.27 108.50 4.77 0.70 N 22 1 N7 C G 2 ? ? C8 C G 2 ? ? N9 C G 2 ? ? 116.48 113.10 3.38 0.50 N 23 1 C8 C G 2 ? ? N9 C G 2 ? ? C4 C G 2 ? ? 103.71 106.40 -2.69 0.40 N 24 1 N7 C G 4 ? ? C8 C G 4 ? ? N9 C G 4 ? ? 116.39 113.10 3.29 0.50 N 25 1 C8 C G 4 ? ? N9 C G 4 ? ? C4 C G 4 ? ? 103.88 106.40 -2.52 0.40 N 26 1 N9 C G 5 ? ? "C1'" C G 5 ? ? "C2'" C G 5 ? ? 101.45 112.00 -10.55 1.10 N 27 1 "C5'" C U 6 ? ? "C4'" C U 6 ? ? "C3'" C U 6 ? ? 105.80 115.20 -9.40 1.40 N 28 1 "C5'" C U 6 ? ? "C4'" C U 6 ? ? "O4'" C U 6 ? ? 117.58 109.80 7.78 0.90 N 29 1 "O4'" C U 6 ? ? "C1'" C U 6 ? ? "C2'" C U 6 ? ? 98.59 105.80 -7.21 1.00 N 30 1 "O4'" C U 6 ? ? "C1'" C U 6 ? ? N1 C U 6 ? ? 122.10 108.50 13.60 0.70 N 31 1 "O4'" D U 1 ? ? "C1'" D U 1 ? ? N1 D U 1 ? ? 113.26 108.50 4.76 0.70 N 32 1 N7 D G 2 ? ? C8 D G 2 ? ? N9 D G 2 ? ? 116.48 113.10 3.38 0.50 N 33 1 C8 D G 2 ? ? N9 D G 2 ? ? C4 D G 2 ? ? 103.68 106.40 -2.72 0.40 N 34 1 "O4'" D G 4 ? ? "C1'" D G 4 ? ? N9 D G 4 ? ? 112.70 108.50 4.20 0.70 N 35 1 N7 D G 4 ? ? C8 D G 4 ? ? N9 D G 4 ? ? 116.39 113.10 3.29 0.50 N 36 1 C8 D G 4 ? ? N9 D G 4 ? ? C4 D G 4 ? ? 103.83 106.40 -2.57 0.40 N 37 1 N9 D G 5 ? ? "C1'" D G 5 ? ? "C2'" D G 5 ? ? 101.50 112.00 -10.50 1.10 N 38 1 "C5'" D U 6 ? ? "C4'" D U 6 ? ? "C3'" D U 6 ? ? 105.80 115.20 -9.40 1.40 N 39 1 "C5'" D U 6 ? ? "C4'" D U 6 ? ? "O4'" D U 6 ? ? 117.62 109.80 7.82 0.90 N 40 1 "O4'" D U 6 ? ? "C1'" D U 6 ? ? "C2'" D U 6 ? ? 98.61 105.80 -7.19 1.00 N 41 1 "O4'" D U 6 ? ? "C1'" D U 6 ? ? N1 D U 6 ? ? 122.09 108.50 13.59 0.70 N # _ndb_struct_conf_na.entry_id 1RAU _ndb_struct_conf_na.feature 'quadruple helix' #