data_1RE1 # _entry.id 1RE1 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 1RE1 RCSB RCSB020674 WWPDB D_1000020674 # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 1pau _pdbx_database_related.details 'Crystal Structure Of The Complex Of Apopain With The Tetrapeptide Aldehyde Inhibitor Ac-Devd-Cho' _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1RE1 _pdbx_database_status.recvd_initial_deposition_date 2003-11-06 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Becker, J.W.' 1 'Rotonda, J.' 2 'Soisson, S.M.' 3 # _citation.id primary _citation.title 'Reducing the Peptidyl Features of Caspase-3 Inhibitors: A Structural Analysis' _citation.journal_abbrev J.Med.Chem. _citation.journal_volume 47 _citation.page_first 2466 _citation.page_last 2474 _citation.year 2004 _citation.journal_id_ASTM JMCMAR _citation.country US _citation.journal_id_ISSN 0022-2623 _citation.journal_id_CSD 0151 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 15115390 _citation.pdbx_database_id_DOI 10.1021/jm0305523 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Becker, J.W.' 1 primary 'Rotonda, J.' 2 primary 'Soisson, S.M.' 3 primary 'Aspiotis, R.' 4 primary 'Bayly, C.' 5 primary 'Francoeur, S.' 6 primary 'Gallant, M.' 7 primary 'Garcia-Calvo, M.' 8 primary 'Giroux, A.' 9 primary 'Grimm, E.' 10 primary 'Han, Y.' 11 primary 'Mckay, D.' 12 primary 'Nicholson, D.W.' 13 primary 'Peterson, E.' 14 primary 'Renaud, J.' 15 primary 'Roy, S.' 16 primary 'Thornberry, N.' 17 primary 'Zamboni, R.' 18 # _cell.entry_id 1RE1 _cell.length_a 69.780 _cell.length_b 83.760 _cell.length_c 95.910 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1RE1 _symmetry.space_group_name_H-M 'I 2 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man Caspase-3 16639.902 1 3.4.22.- ? 'P17 subunit' ? 2 polymer man Caspase-3 11910.604 1 3.4.22.- ? 'P12 subunit' ? 3 non-polymer syn '(3S)-3-{[(5-BROMOPYRIDIN-3-YL)CARBONYL]AMINO}-4-OXOBUTANOIC ACID' 301.093 1 ? ? ? ? 4 water nat water 18.015 26 ? ? ? ? # loop_ _entity_name_com.entity_id _entity_name_com.name 1 'Cysteine protease CPP32, Yama protein, CPP-32, CASP-3, SREBP cleavage activity 1, SCA-1, Apopain' 2 'Cysteine protease CPP32, Yama protein, CPP-32, CASP-3, SREBP cleavage activity 1, SCA-1, Apopain' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;SGISLDNSYKMDYPEMGLCIIINNKNFHKSTGMTSRSGTDVDAANLRETFRNLKYEVRNKNDLTREEIVELMRDVSKEDH SKRSSFVCVLLSHGEEGIIFGTNGPVDLKKITNFFRGDRCRSLTGKPKLFIIQACRGTELDCGIETD ; ;SGISLDNSYKMDYPEMGLCIIINNKNFHKSTGMTSRSGTDVDAANLRETFRNLKYEVRNKNDLTREEIVELMRDVSKEDH SKRSSFVCVLLSHGEEGIIFGTNGPVDLKKITNFFRGDRCRSLTGKPKLFIIQACRGTELDCGIETD ; A ? 2 'polypeptide(L)' no no ;SGVDDDMACHKIPVEADFLYAYSTAPGYYSWRNSKDGSWFIQSLCAMLKQYADKLEFMHILTRVNRKVATEFESFSFDAT FHAKKQIPCIVSMLTKELYFYH ; ;SGVDDDMACHKIPVEADFLYAYSTAPGYYSWRNSKDGSWFIQSLCAMLKQYADKLEFMHILTRVNRKVATEFESFSFDAT FHAKKQIPCIVSMLTKELYFYH ; B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 GLY n 1 3 ILE n 1 4 SER n 1 5 LEU n 1 6 ASP n 1 7 ASN n 1 8 SER n 1 9 TYR n 1 10 LYS n 1 11 MET n 1 12 ASP n 1 13 TYR n 1 14 PRO n 1 15 GLU n 1 16 MET n 1 17 GLY n 1 18 LEU n 1 19 CYS n 1 20 ILE n 1 21 ILE n 1 22 ILE n 1 23 ASN n 1 24 ASN n 1 25 LYS n 1 26 ASN n 1 27 PHE n 1 28 HIS n 1 29 LYS n 1 30 SER n 1 31 THR n 1 32 GLY n 1 33 MET n 1 34 THR n 1 35 SER n 1 36 ARG n 1 37 SER n 1 38 GLY n 1 39 THR n 1 40 ASP n 1 41 VAL n 1 42 ASP n 1 43 ALA n 1 44 ALA n 1 45 ASN n 1 46 LEU n 1 47 ARG n 1 48 GLU n 1 49 THR n 1 50 PHE n 1 51 ARG n 1 52 ASN n 1 53 LEU n 1 54 LYS n 1 55 TYR n 1 56 GLU n 1 57 VAL n 1 58 ARG n 1 59 ASN n 1 60 LYS n 1 61 ASN n 1 62 ASP n 1 63 LEU n 1 64 THR n 1 65 ARG n 1 66 GLU n 1 67 GLU n 1 68 ILE n 1 69 VAL n 1 70 GLU n 1 71 LEU n 1 72 MET n 1 73 ARG n 1 74 ASP n 1 75 VAL n 1 76 SER n 1 77 LYS n 1 78 GLU n 1 79 ASP n 1 80 HIS n 1 81 SER n 1 82 LYS n 1 83 ARG n 1 84 SER n 1 85 SER n 1 86 PHE n 1 87 VAL n 1 88 CYS n 1 89 VAL n 1 90 LEU n 1 91 LEU n 1 92 SER n 1 93 HIS n 1 94 GLY n 1 95 GLU n 1 96 GLU n 1 97 GLY n 1 98 ILE n 1 99 ILE n 1 100 PHE n 1 101 GLY n 1 102 THR n 1 103 ASN n 1 104 GLY n 1 105 PRO n 1 106 VAL n 1 107 ASP n 1 108 LEU n 1 109 LYS n 1 110 LYS n 1 111 ILE n 1 112 THR n 1 113 ASN n 1 114 PHE n 1 115 PHE n 1 116 ARG n 1 117 GLY n 1 118 ASP n 1 119 ARG n 1 120 CYS n 1 121 ARG n 1 122 SER n 1 123 LEU n 1 124 THR n 1 125 GLY n 1 126 LYS n 1 127 PRO n 1 128 LYS n 1 129 LEU n 1 130 PHE n 1 131 ILE n 1 132 ILE n 1 133 GLN n 1 134 ALA n 1 135 CYS n 1 136 ARG n 1 137 GLY n 1 138 THR n 1 139 GLU n 1 140 LEU n 1 141 ASP n 1 142 CYS n 1 143 GLY n 1 144 ILE n 1 145 GLU n 1 146 THR n 1 147 ASP n 2 1 SER n 2 2 GLY n 2 3 VAL n 2 4 ASP n 2 5 ASP n 2 6 ASP n 2 7 MET n 2 8 ALA n 2 9 CYS n 2 10 HIS n 2 11 LYS n 2 12 ILE n 2 13 PRO n 2 14 VAL n 2 15 GLU n 2 16 ALA n 2 17 ASP n 2 18 PHE n 2 19 LEU n 2 20 TYR n 2 21 ALA n 2 22 TYR n 2 23 SER n 2 24 THR n 2 25 ALA n 2 26 PRO n 2 27 GLY n 2 28 TYR n 2 29 TYR n 2 30 SER n 2 31 TRP n 2 32 ARG n 2 33 ASN n 2 34 SER n 2 35 LYS n 2 36 ASP n 2 37 GLY n 2 38 SER n 2 39 TRP n 2 40 PHE n 2 41 ILE n 2 42 GLN n 2 43 SER n 2 44 LEU n 2 45 CYS n 2 46 ALA n 2 47 MET n 2 48 LEU n 2 49 LYS n 2 50 GLN n 2 51 TYR n 2 52 ALA n 2 53 ASP n 2 54 LYS n 2 55 LEU n 2 56 GLU n 2 57 PHE n 2 58 MET n 2 59 HIS n 2 60 ILE n 2 61 LEU n 2 62 THR n 2 63 ARG n 2 64 VAL n 2 65 ASN n 2 66 ARG n 2 67 LYS n 2 68 VAL n 2 69 ALA n 2 70 THR n 2 71 GLU n 2 72 PHE n 2 73 GLU n 2 74 SER n 2 75 PHE n 2 76 SER n 2 77 PHE n 2 78 ASP n 2 79 ALA n 2 80 THR n 2 81 PHE n 2 82 HIS n 2 83 ALA n 2 84 LYS n 2 85 LYS n 2 86 GLN n 2 87 ILE n 2 88 PRO n 2 89 CYS n 2 90 ILE n 2 91 VAL n 2 92 SER n 2 93 MET n 2 94 LEU n 2 95 THR n 2 96 LYS n 2 97 GLU n 2 98 LEU n 2 99 TYR n 2 100 PHE n 2 101 TYR n 2 102 HIS n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample ? ? ? human Homo 'CASP3, CPP32' ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? 'Escherichia coli BL21(DE3)' 469008 Escherichia ? ? 'Escherichia coli' ? ? 'BL21(DE3)' ? ? ? ? ? ? ? PLASMID ? ? ? ? ? ? 2 1 sample ? ? ? human Homo 'CASP3, CPP32' ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? 'Escherichia coli BL21(DE3)' 469008 Escherichia ? ? 'Escherichia coli' ? ? 'BL21(DE3)' ? ? ? ? ? ? ? PLASMID ? ? ? ? ? ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP CASP3_HUMAN P42574 1 ;SGISLDNSYKMDYPEMGLCIIINNKNFHKSTGMTSRSGTDVDAANLRETFRNLKYEVRNKNDLTREEIVELMRDVSKEDH SKRSSFVCVLLSHGEEGIIFGTNGPVDLKKITNFFRGDRCRSLTGKPKLFIIQACRGTELDCGIETD ; 29 ? 2 UNP CASP3_HUMAN P42574 2 ;SGVDDDMACHKIPVDADFLYAYSTAPGYYSWRNSKDGSWFIQSLCAMLKQYADKLEFMHILTRVNRKVATEFESFSFDAT FHAKKQIPCIVSMLTKELYFYH ; 176 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1RE1 A 1 ? 147 ? P42574 29 ? 175 ? 145 297 2 2 1RE1 B 1 ? 102 ? P42574 176 ? 277 ? 310 402 # _struct_ref_seq_dif.align_id 2 _struct_ref_seq_dif.pdbx_pdb_id_code 1RE1 _struct_ref_seq_dif.mon_id GLU _struct_ref_seq_dif.pdbx_pdb_strand_id B _struct_ref_seq_dif.seq_num 15 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code P42574 _struct_ref_seq_dif.db_mon_id ASP _struct_ref_seq_dif.pdbx_seq_db_seq_num 190 _struct_ref_seq_dif.details 'ISOFORM BETA' _struct_ref_seq_dif.pdbx_auth_seq_num 324 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NA3 non-polymer . '(3S)-3-{[(5-BROMOPYRIDIN-3-YL)CARBONYL]AMINO}-4-OXOBUTANOIC ACID' ? 'C10 H9 Br N2 O4' 301.093 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1RE1 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.45 _exptl_crystal.density_percent_sol 49.87 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 5.3 _exptl_crystal_grow.pdbx_details '12% PEG 5000, 100mM Citrate, 10mM DTT, 3mM NaN(3), pH 5.3, VAPOR DIFFUSION, HANGING DROP, temperature 293K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 293 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'AREA DETECTOR' _diffrn_detector.type SIEMENS _diffrn_detector.pdbx_collection_date 1997-04-14 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU RU200' _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.5418 # _reflns.entry_id 1RE1 _reflns.observed_criterion_sigma_I 0.0 _reflns.observed_criterion_sigma_F 0.0 _reflns.d_resolution_low 20.0 _reflns.d_resolution_high 2.5 _reflns.number_obs 9319 _reflns.number_all 10056 _reflns.percent_possible_obs ? _reflns.pdbx_Rmerge_I_obs 0.065 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 4.16 _reflns.B_iso_Wilson_estimate 15.10 _reflns.pdbx_redundancy 1.91 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.50 _reflns_shell.d_res_low 2.59 _reflns_shell.percent_possible_all 48.2 _reflns_shell.Rmerge_I_obs 0.261 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 3.65 _reflns_shell.pdbx_redundancy 1.2 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 1RE1 _refine.ls_number_reflns_obs 8560 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF 43559.48 _refine.pdbx_data_cutoff_low_absF 0.0000 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 19.89 _refine.ls_d_res_high 2.50 _refine.ls_percent_reflns_obs 85.5 _refine.ls_R_factor_obs ? _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.194 _refine.ls_R_factor_R_free 0.261 _refine.ls_R_factor_R_free_error 0.009 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 10.5 _refine.ls_number_reflns_R_free 896 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 20.50 _refine.aniso_B[1][1] 0.24 _refine.aniso_B[2][2] 3.07 _refine.aniso_B[3][3] -3.31 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.30 _refine.solvent_model_param_bsol 15.86 _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'BULK SOLVENT MODEL USEDATOM 1 CB' _refine.pdbx_starting_model 'PDB ENTRY 1PAU' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values 'ENGH & HUBER' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 1RE1 _refine_analyze.Luzzati_coordinate_error_obs 0.28 _refine_analyze.Luzzati_sigma_a_obs 0.33 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.39 _refine_analyze.Luzzati_sigma_a_free 0.38 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1869 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 17 _refine_hist.number_atoms_solvent 26 _refine_hist.number_atoms_total 1912 _refine_hist.d_res_high 2.50 _refine_hist.d_res_low 19.89 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.007 ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.40 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 23.60 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 1.18 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it 1.240 1.500 ? ? 'X-RAY DIFFRACTION' ? c_mcangle_it 2.070 2.000 ? ? 'X-RAY DIFFRACTION' ? c_scbond_it 2.100 2.000 ? ? 'X-RAY DIFFRACTION' ? c_scangle_it 3.120 2.500 ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 2.50 _refine_ls_shell.d_res_low 2.66 _refine_ls_shell.number_reflns_R_work 832 _refine_ls_shell.R_factor_R_work 0.268 _refine_ls_shell.percent_reflns_obs 57.4 _refine_ls_shell.R_factor_R_free 0.324 _refine_ls_shell.R_factor_R_free_error 0.032 _refine_ls_shell.percent_reflns_R_free 10.8 _refine_ls_shell.number_reflns_R_free 101 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.R_factor_all ? # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 PROTEIN_REP.PARAM PROTEIN.TOP 'X-RAY DIFFRACTION' 2 WATER_REP.PARAM WATER.TOP 'X-RAY DIFFRACTION' 3 PARAM.ICE TOP_NA3.ICE 'X-RAY DIFFRACTION' # _struct.entry_id 1RE1 _struct.title 'CRYSTAL STRUCTURE OF CASPASE-3 WITH A NICOTINIC ACID ALDEHYDE INHIBITOR' _struct.pdbx_descriptor 'Caspase-3 (E.C.3.4.22.-)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1RE1 _struct_keywords.pdbx_keywords HYDROLASE _struct_keywords.text 'CYSTEINE PROTEASE, CASPASE-3, APOPAIN, CPP32, YAMA, COMPLEX (PROTEASE-INHIBITOR), HYDROLASE' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 4 ? # _struct_biol.id 1 _struct_biol.details ;The second part of the biological assemblyis generated by the two-fold axis: 1-x, y, -z ; _struct_biol.pdbx_parent_biol_id ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 HIS A 28 ? GLY A 32 C HIS A 174 GLY A 175 5 ? 5 HELX_P HELX_P2 2 GLY A 38 ? LEU A 53 ? GLY A 181 LEU A 196 1 ? 16 HELX_P HELX_P3 3 THR A 64 ? LYS A 77 ? THR A 207 LYS A 220 1 ? 14 HELX_P HELX_P4 4 LEU A 108 ? ASN A 113 ? LEU A 258 ASN A 263 1 ? 6 HELX_P HELX_P5 5 PHE A 114 ? ARG A 116 ? PHE A 264 ARG A 266 5 ? 3 HELX_P HELX_P6 6 TRP B 39 ? ALA B 52 ? TRP B 348 ALA B 361 1 ? 14 HELX_P HELX_P7 7 GLU B 56 ? PHE B 72 ? GLU B 365 PHE B 380 1 ? 17 HELX_P HELX_P8 8 ASP B 78 E HIS B 82 I ASP B 381 HIS B 381 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_conn.id covale1 _struct_conn.conn_type_id covale _struct_conn.pdbx_leaving_atom_flag ? _struct_conn.pdbx_PDB_id ? _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 135 _struct_conn.ptnr1_label_atom_id SG _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id C _struct_conn.ptnr2_label_comp_id NA3 _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_label_atom_id C4 _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 285 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id NA3 _struct_conn.ptnr2_auth_seq_id 501 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.details ? _struct_conn.pdbx_dist_value 1.769 _struct_conn.pdbx_value_order ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 6 ? B ? 3 ? C ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? parallel A 3 4 ? parallel A 4 5 ? parallel A 5 6 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel C 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 GLU A 56 ? ASN A 61 ? GLU A 199 ASN A 204 A 2 GLU A 15 ? ASN A 23 ? GLU A 162 ASN A 169 A 3 ARG A 83 ? LEU A 91 ? ARG A 227 LEU A 235 A 4 LYS A 128 ? GLN A 133 ? LYS A 278 GLN A 283 A 5 PHE B 18 ? TYR B 22 ? PHE B 327 TYR B 331 A 6 CYS B 89 ? MET B 93 ? CYS B 388 MET B 393 B 1 GLY A 94 ? GLU A 95 ? GLY A 238 GLU A 239 B 2 ILE A 98 ? GLY A 101 ? ILE A 242 GLY A 245 B 3 GLY A 104 ? ASP A 107 ? GLY A 254 ASP A 257 C 1 ARG B 32 ? ASN B 33 ? ARG B 341 ASN B 342 C 2 GLY B 37 ? SER B 38 ? GLY B 346 SER B 347 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O GLU A 56 ? O GLU A 199 N GLY A 17 ? N GLY A 163 A 2 3 N ILE A 20 ? N ILE A 166 O VAL A 89 ? O VAL A 233 A 3 4 N PHE A 86 ? N PHE A 230 O LEU A 129 ? O LEU A 279 A 4 5 N PHE A 130 ? N PHE A 280 O LEU B 19 ? O LEU B 328 A 5 6 N TYR B 20 ? N TYR B 329 O VAL B 91 ? O VAL B 390 B 1 2 N GLU A 95 ? N GLU A 239 O ILE A 98 ? O ILE A 242 B 2 3 N GLY A 101 ? N GLY A 245 O GLY A 104 ? O GLY A 254 C 1 2 N ASN B 33 ? N ASN B 342 O GLY B 37 ? O GLY B 346 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id ? _struct_site.pdbx_auth_comp_id ? _struct_site.pdbx_auth_seq_id ? _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 10 _struct_site.details 'BINDING SITE FOR RESIDUE NA3 A 501' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 10 ARG A 36 ? ARG A 179 . ? 1_555 ? 2 AC1 10 SER A 92 ? SER A 236 . ? 1_555 ? 3 AC1 10 HIS A 93 ? HIS A 237 . ? 1_555 ? 4 AC1 10 GLY A 94 ? GLY A 238 . ? 1_555 ? 5 AC1 10 GLN A 133 ? GLN A 283 . ? 1_555 ? 6 AC1 10 CYS A 135 ? CYS A 285 . ? 1_555 ? 7 AC1 10 TYR B 29 ? TYR B 338 . ? 1_555 ? 8 AC1 10 SER B 30 ? SER B 339 . ? 1_555 ? 9 AC1 10 TRP B 31 ? TRP B 340 . ? 1_555 ? 10 AC1 10 ARG B 32 ? ARG B 341 . ? 1_555 ? # _database_PDB_matrix.entry_id 1RE1 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1RE1 _atom_sites.fract_transf_matrix[1][1] 0.014331 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.011939 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.010426 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol BR C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 145 ? ? ? A . n A 1 2 GLY 2 146 ? ? ? A . n A 1 3 ILE 3 147 ? ? ? A . n A 1 4 SER 4 148 ? ? ? A . n A 1 5 LEU 5 149 ? ? ? A . n A 1 6 ASP 6 150 150 ASP ASP A . n A 1 7 ASN 7 151 151 ASN ASN A . n A 1 8 SER 8 152 152 SER SER A . n A 1 9 TYR 9 153 153 TYR TYR A . n A 1 10 LYS 10 154 154 LYS LYS A . n A 1 11 MET 11 155 155 MET MET A . n A 1 12 ASP 12 156 156 ASP ASP A . n A 1 13 TYR 13 156 156 TYR TYR A A n A 1 14 PRO 14 161 161 PRO PRO A . n A 1 15 GLU 15 162 162 GLU GLU A . n A 1 16 MET 16 162 162 MET MET A A n A 1 17 GLY 17 163 163 GLY GLY A . n A 1 18 LEU 18 164 164 LEU LEU A . n A 1 19 CYS 19 165 165 CYS CYS A . n A 1 20 ILE 20 166 166 ILE ILE A . n A 1 21 ILE 21 167 167 ILE ILE A . n A 1 22 ILE 22 168 168 ILE ILE A . n A 1 23 ASN 23 169 169 ASN ASN A . n A 1 24 ASN 24 170 170 ASN ASN A . n A 1 25 LYS 25 171 171 LYS LYS A . n A 1 26 ASN 26 172 172 ASN ASN A . n A 1 27 PHE 27 173 173 PHE PHE A . n A 1 28 HIS 28 174 174 HIS HIS A . n A 1 29 LYS 29 175 175 LYS LYS A . n A 1 30 SER 30 175 175 SER SER A A n A 1 31 THR 31 175 175 THR THR A B n A 1 32 GLY 32 175 175 GLY GLY A C n A 1 33 MET 33 176 176 MET MET A . n A 1 34 THR 34 177 177 THR THR A . n A 1 35 SER 35 178 178 SER SER A . n A 1 36 ARG 36 179 179 ARG ARG A . n A 1 37 SER 37 180 180 SER SER A . n A 1 38 GLY 38 181 181 GLY GLY A . n A 1 39 THR 39 182 182 THR THR A . n A 1 40 ASP 40 183 183 ASP ASP A . n A 1 41 VAL 41 184 184 VAL VAL A . n A 1 42 ASP 42 185 185 ASP ASP A . n A 1 43 ALA 43 186 186 ALA ALA A . n A 1 44 ALA 44 187 187 ALA ALA A . n A 1 45 ASN 45 188 188 ASN ASN A . n A 1 46 LEU 46 189 189 LEU LEU A . n A 1 47 ARG 47 190 190 ARG ARG A . n A 1 48 GLU 48 191 191 GLU GLU A . n A 1 49 THR 49 192 192 THR THR A . n A 1 50 PHE 50 193 193 PHE PHE A . n A 1 51 ARG 51 194 194 ARG ARG A . n A 1 52 ASN 52 195 195 ASN ASN A . n A 1 53 LEU 53 196 196 LEU LEU A . n A 1 54 LYS 54 197 197 LYS LYS A . n A 1 55 TYR 55 198 198 TYR TYR A . n A 1 56 GLU 56 199 199 GLU GLU A . n A 1 57 VAL 57 200 200 VAL VAL A . n A 1 58 ARG 58 201 201 ARG ARG A . n A 1 59 ASN 59 202 202 ASN ASN A . n A 1 60 LYS 60 203 203 LYS LYS A . n A 1 61 ASN 61 204 204 ASN ASN A . n A 1 62 ASP 62 205 205 ASP ASP A . n A 1 63 LEU 63 206 206 LEU LEU A . n A 1 64 THR 64 207 207 THR THR A . n A 1 65 ARG 65 208 208 ARG ARG A . n A 1 66 GLU 66 209 209 GLU GLU A . n A 1 67 GLU 67 210 210 GLU GLU A . n A 1 68 ILE 68 211 211 ILE ILE A . n A 1 69 VAL 69 212 212 VAL VAL A . n A 1 70 GLU 70 213 213 GLU GLU A . n A 1 71 LEU 71 214 214 LEU LEU A . n A 1 72 MET 72 215 215 MET MET A . n A 1 73 ARG 73 216 216 ARG ARG A . n A 1 74 ASP 74 217 217 ASP ASP A . n A 1 75 VAL 75 218 218 VAL VAL A . n A 1 76 SER 76 219 219 SER SER A . n A 1 77 LYS 77 220 220 LYS LYS A . n A 1 78 GLU 78 221 221 GLU GLU A . n A 1 79 ASP 79 222 222 ASP ASP A . n A 1 80 HIS 80 224 224 HIS HIS A . n A 1 81 SER 81 225 225 SER SER A . n A 1 82 LYS 82 226 226 LYS LYS A . n A 1 83 ARG 83 227 227 ARG ARG A . n A 1 84 SER 84 228 228 SER SER A . n A 1 85 SER 85 229 229 SER SER A . n A 1 86 PHE 86 230 230 PHE PHE A . n A 1 87 VAL 87 231 231 VAL VAL A . n A 1 88 CYS 88 232 232 CYS CYS A . n A 1 89 VAL 89 233 233 VAL VAL A . n A 1 90 LEU 90 234 234 LEU LEU A . n A 1 91 LEU 91 235 235 LEU LEU A . n A 1 92 SER 92 236 236 SER SER A . n A 1 93 HIS 93 237 237 HIS HIS A . n A 1 94 GLY 94 238 238 GLY GLY A . n A 1 95 GLU 95 239 239 GLU GLU A . n A 1 96 GLU 96 240 240 GLU GLU A . n A 1 97 GLY 97 241 241 GLY GLY A . n A 1 98 ILE 98 242 242 ILE ILE A . n A 1 99 ILE 99 243 243 ILE ILE A . n A 1 100 PHE 100 244 244 PHE PHE A . n A 1 101 GLY 101 245 245 GLY GLY A . n A 1 102 THR 102 246 246 THR THR A . n A 1 103 ASN 103 247 247 ASN ASN A . n A 1 104 GLY 104 254 254 GLY GLY A . n A 1 105 PRO 105 255 255 PRO PRO A . n A 1 106 VAL 106 256 256 VAL VAL A . n A 1 107 ASP 107 257 257 ASP ASP A . n A 1 108 LEU 108 258 258 LEU LEU A . n A 1 109 LYS 109 259 259 LYS LYS A . n A 1 110 LYS 110 260 260 LYS LYS A . n A 1 111 ILE 111 261 261 ILE ILE A . n A 1 112 THR 112 262 262 THR THR A . n A 1 113 ASN 113 263 263 ASN ASN A . n A 1 114 PHE 114 264 264 PHE PHE A . n A 1 115 PHE 115 265 265 PHE PHE A . n A 1 116 ARG 116 266 266 ARG ARG A . n A 1 117 GLY 117 267 267 GLY GLY A . n A 1 118 ASP 118 268 268 ASP ASP A . n A 1 119 ARG 119 269 269 ARG ARG A . n A 1 120 CYS 120 270 270 CYS CYS A . n A 1 121 ARG 121 271 271 ARG ARG A . n A 1 122 SER 122 272 272 SER SER A . n A 1 123 LEU 123 273 273 LEU LEU A . n A 1 124 THR 124 274 274 THR THR A . n A 1 125 GLY 125 275 275 GLY GLY A . n A 1 126 LYS 126 276 276 LYS LYS A . n A 1 127 PRO 127 277 277 PRO PRO A . n A 1 128 LYS 128 278 278 LYS LYS A . n A 1 129 LEU 129 279 279 LEU LEU A . n A 1 130 PHE 130 280 280 PHE PHE A . n A 1 131 ILE 131 281 281 ILE ILE A . n A 1 132 ILE 132 282 282 ILE ILE A . n A 1 133 GLN 133 283 283 GLN GLN A . n A 1 134 ALA 134 284 284 ALA ALA A . n A 1 135 CYS 135 285 285 CYS CYS A . n A 1 136 ARG 136 286 286 ARG ARG A . n A 1 137 GLY 137 287 287 GLY GLY A . n A 1 138 THR 138 288 288 THR THR A . n A 1 139 GLU 139 289 289 GLU GLU A . n A 1 140 LEU 140 290 290 LEU LEU A . n A 1 141 ASP 141 291 291 ASP ASP A . n A 1 142 CYS 142 292 292 CYS CYS A . n A 1 143 GLY 143 293 293 GLY GLY A . n A 1 144 ILE 144 294 294 ILE ILE A . n A 1 145 GLU 145 295 295 GLU GLU A . n A 1 146 THR 146 296 ? ? ? A . n A 1 147 ASP 147 297 ? ? ? A . n B 2 1 SER 1 310 ? ? ? B . n B 2 2 GLY 2 311 ? ? ? B . n B 2 3 VAL 3 312 ? ? ? B . n B 2 4 ASP 4 313 ? ? ? B . n B 2 5 ASP 5 314 ? ? ? B . n B 2 6 ASP 6 315 ? ? ? B . n B 2 7 MET 7 316 ? ? ? B . n B 2 8 ALA 8 317 ? ? ? B . n B 2 9 CYS 9 318 ? ? ? B . n B 2 10 HIS 10 319 ? ? ? B . n B 2 11 LYS 11 320 320 LYS LYS B . n B 2 12 ILE 12 321 321 ILE ILE B . n B 2 13 PRO 13 322 322 PRO PRO B . n B 2 14 VAL 14 323 323 VAL VAL B . n B 2 15 GLU 15 324 324 GLU GLU B . n B 2 16 ALA 16 325 325 ALA ALA B . n B 2 17 ASP 17 326 326 ASP ASP B . n B 2 18 PHE 18 327 327 PHE PHE B . n B 2 19 LEU 19 328 328 LEU LEU B . n B 2 20 TYR 20 329 329 TYR TYR B . n B 2 21 ALA 21 330 330 ALA ALA B . n B 2 22 TYR 22 331 331 TYR TYR B . n B 2 23 SER 23 332 332 SER SER B . n B 2 24 THR 24 333 333 THR THR B . n B 2 25 ALA 25 334 334 ALA ALA B . n B 2 26 PRO 26 335 335 PRO PRO B . n B 2 27 GLY 27 336 336 GLY GLY B . n B 2 28 TYR 28 337 337 TYR TYR B . n B 2 29 TYR 29 338 338 TYR TYR B . n B 2 30 SER 30 339 339 SER SER B . n B 2 31 TRP 31 340 340 TRP TRP B . n B 2 32 ARG 32 341 341 ARG ARG B . n B 2 33 ASN 33 342 342 ASN ASN B . n B 2 34 SER 34 343 343 SER SER B . n B 2 35 LYS 35 344 344 LYS LYS B . n B 2 36 ASP 36 345 345 ASP ASP B . n B 2 37 GLY 37 346 346 GLY GLY B . n B 2 38 SER 38 347 347 SER SER B . n B 2 39 TRP 39 348 348 TRP TRP B . n B 2 40 PHE 40 349 349 PHE PHE B . n B 2 41 ILE 41 350 350 ILE ILE B . n B 2 42 GLN 42 351 351 GLN GLN B . n B 2 43 SER 43 352 352 SER SER B . n B 2 44 LEU 44 353 353 LEU LEU B . n B 2 45 CYS 45 354 354 CYS CYS B . n B 2 46 ALA 46 355 355 ALA ALA B . n B 2 47 MET 47 356 356 MET MET B . n B 2 48 LEU 48 357 357 LEU LEU B . n B 2 49 LYS 49 358 358 LYS LYS B . n B 2 50 GLN 50 359 359 GLN GLN B . n B 2 51 TYR 51 360 360 TYR TYR B . n B 2 52 ALA 52 361 361 ALA ALA B . n B 2 53 ASP 53 362 362 ASP ASP B . n B 2 54 LYS 54 363 363 LYS LYS B . n B 2 55 LEU 55 364 364 LEU LEU B . n B 2 56 GLU 56 365 365 GLU GLU B . n B 2 57 PHE 57 366 366 PHE PHE B . n B 2 58 MET 58 367 367 MET MET B . n B 2 59 HIS 59 368 368 HIS HIS B . n B 2 60 ILE 60 369 369 ILE ILE B . n B 2 61 LEU 61 370 370 LEU LEU B . n B 2 62 THR 62 371 371 THR THR B . n B 2 63 ARG 63 372 372 ARG ARG B . n B 2 64 VAL 64 373 373 VAL VAL B . n B 2 65 ASN 65 374 374 ASN ASN B . n B 2 66 ARG 66 375 375 ARG ARG B . n B 2 67 LYS 67 376 376 LYS LYS B . n B 2 68 VAL 68 377 377 VAL VAL B . n B 2 69 ALA 69 378 378 ALA ALA B . n B 2 70 THR 70 379 379 THR THR B . n B 2 71 GLU 71 379 379 GLU GLU B A n B 2 72 PHE 72 380 380 PHE PHE B . n B 2 73 GLU 73 381 381 GLU GLU B . n B 2 74 SER 74 381 381 SER SER B A n B 2 75 PHE 75 381 381 PHE PHE B B n B 2 76 SER 76 381 381 SER SER B C n B 2 77 PHE 77 381 381 PHE PHE B D n B 2 78 ASP 78 381 381 ASP ASP B E n B 2 79 ALA 79 381 381 ALA ALA B F n B 2 80 THR 80 381 381 THR THR B G n B 2 81 PHE 81 381 381 PHE PHE B H n B 2 82 HIS 82 381 381 HIS HIS B I n B 2 83 ALA 83 382 382 ALA ALA B . n B 2 84 LYS 84 383 383 LYS LYS B . n B 2 85 LYS 85 384 384 LYS LYS B . n B 2 86 GLN 86 385 385 GLN GLN B . n B 2 87 ILE 87 386 386 ILE ILE B . n B 2 88 PRO 88 387 387 PRO PRO B . n B 2 89 CYS 89 388 388 CYS CYS B . n B 2 90 ILE 90 389 389 ILE ILE B . n B 2 91 VAL 91 390 390 VAL VAL B . n B 2 92 SER 92 392 392 SER SER B . n B 2 93 MET 93 393 393 MET MET B . n B 2 94 LEU 94 394 394 LEU LEU B . n B 2 95 THR 95 395 395 THR THR B . n B 2 96 LYS 96 396 396 LYS LYS B . n B 2 97 GLU 97 397 397 GLU GLU B . n B 2 98 LEU 98 398 398 LEU LEU B . n B 2 99 TYR 99 399 399 TYR TYR B . n B 2 100 PHE 100 400 400 PHE PHE B . n B 2 101 TYR 101 401 401 TYR TYR B . n B 2 102 HIS 102 402 ? ? ? B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 NA3 1 501 501 NA3 NA3 A . D 4 HOH 1 602 602 HOH HOH A . D 4 HOH 2 605 605 HOH HOH A . D 4 HOH 3 608 608 HOH HOH A . D 4 HOH 4 609 609 HOH HOH A . D 4 HOH 5 610 610 HOH HOH A . D 4 HOH 6 612 612 HOH HOH A . D 4 HOH 7 613 613 HOH HOH A . D 4 HOH 8 614 614 HOH HOH A . D 4 HOH 9 616 616 HOH HOH A . D 4 HOH 10 617 617 HOH HOH A . D 4 HOH 11 618 618 HOH HOH A . D 4 HOH 12 619 619 HOH HOH A . D 4 HOH 13 621 621 HOH HOH A . D 4 HOH 14 622 622 HOH HOH A . D 4 HOH 15 624 624 HOH HOH A . D 4 HOH 16 625 625 HOH HOH A . E 4 HOH 1 601 601 HOH HOH B . E 4 HOH 2 603 603 HOH HOH B . E 4 HOH 3 604 604 HOH HOH B . E 4 HOH 4 606 606 HOH HOH B . E 4 HOH 5 607 607 HOH HOH B . E 4 HOH 6 611 611 HOH HOH B . E 4 HOH 7 615 615 HOH HOH B . E 4 HOH 8 620 620 HOH HOH B . E 4 HOH 9 623 623 HOH HOH B . E 4 HOH 10 626 626 HOH HOH B . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 13840 ? 1 MORE -63 ? 1 'SSA (A^2)' 17270 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 3_655 -x+1,y,-z -1.0000000000 0.0000000000 0.0000000000 69.7800000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2004-05-11 2 'Structure model' 1 1 2008-04-29 3 'Structure model' 1 2 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Derived calculations' 3 3 'Structure model' 'Version format compliance' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CNX refinement 2002 ? 1 SAINT 'data scaling' 'V. 4.050' ? 2 X-PLOR phasing . ? 3 # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 N _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 GLY _pdbx_validate_rmsd_angle.auth_seq_id_1 245 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 CA _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 GLY _pdbx_validate_rmsd_angle.auth_seq_id_2 245 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 C _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 GLY _pdbx_validate_rmsd_angle.auth_seq_id_3 245 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 98.02 _pdbx_validate_rmsd_angle.angle_target_value 113.10 _pdbx_validate_rmsd_angle.angle_deviation -15.08 _pdbx_validate_rmsd_angle.angle_standard_deviation 2.50 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER A 236 ? ? -176.82 -173.84 2 1 ALA A 284 ? ? -170.00 146.43 # _pdbx_unobs_or_zero_occ_atoms.id 1 _pdbx_unobs_or_zero_occ_atoms.PDB_model_num 1 _pdbx_unobs_or_zero_occ_atoms.polymer_flag Y _pdbx_unobs_or_zero_occ_atoms.occupancy_flag 1 _pdbx_unobs_or_zero_occ_atoms.auth_asym_id A _pdbx_unobs_or_zero_occ_atoms.auth_comp_id ASP _pdbx_unobs_or_zero_occ_atoms.auth_seq_id 150 _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code ? _pdbx_unobs_or_zero_occ_atoms.auth_atom_id CB _pdbx_unobs_or_zero_occ_atoms.label_alt_id ? _pdbx_unobs_or_zero_occ_atoms.label_asym_id A _pdbx_unobs_or_zero_occ_atoms.label_comp_id ASP _pdbx_unobs_or_zero_occ_atoms.label_seq_id 6 _pdbx_unobs_or_zero_occ_atoms.label_atom_id CB # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A SER 145 ? A SER 1 2 1 Y 1 A GLY 146 ? A GLY 2 3 1 Y 1 A ILE 147 ? A ILE 3 4 1 Y 1 A SER 148 ? A SER 4 5 1 Y 1 A LEU 149 ? A LEU 5 6 1 Y 1 A THR 296 ? A THR 146 7 1 Y 1 A ASP 297 ? A ASP 147 8 1 Y 1 B SER 310 ? B SER 1 9 1 Y 1 B GLY 311 ? B GLY 2 10 1 Y 1 B VAL 312 ? B VAL 3 11 1 Y 1 B ASP 313 ? B ASP 4 12 1 Y 1 B ASP 314 ? B ASP 5 13 1 Y 1 B ASP 315 ? B ASP 6 14 1 Y 1 B MET 316 ? B MET 7 15 1 Y 1 B ALA 317 ? B ALA 8 16 1 Y 1 B CYS 318 ? B CYS 9 17 1 Y 1 B HIS 319 ? B HIS 10 18 1 Y 1 B HIS 402 ? B HIS 102 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 '(3S)-3-{[(5-BROMOPYRIDIN-3-YL)CARBONYL]AMINO}-4-OXOBUTANOIC ACID' NA3 4 water HOH #