data_1RGO # _entry.id 1RGO # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.355 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1RGO pdb_00001rgo 10.2210/pdb1rgo/pdb RCSB RCSB020729 ? ? WWPDB D_1000020729 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1RGO _pdbx_database_status.recvd_initial_deposition_date 2003-11-12 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Hudson, B.P.' 1 'Martinez-Yamout, M.A.' 2 'Dyson, H.J.' 3 'Wright, P.E.' 4 # _citation.id primary _citation.title 'Recognition of the mRNA AU-rich element by the zinc finger domain of TIS11d.' _citation.journal_abbrev NAT.STRUCT.MOL.BIOL. _citation.journal_volume 11 _citation.page_first 257 _citation.page_last 264 _citation.year 2004 _citation.journal_id_ASTM ? _citation.country US _citation.journal_id_ISSN 1545-9993 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 14981510 _citation.pdbx_database_id_DOI 10.1038/nsmb738 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Hudson, B.P.' 1 ? primary 'Martinez-Yamout, M.A.' 2 ? primary 'Dyson, H.J.' 3 ? primary 'Wright, P.E.' 4 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;RNA (5'-R(*UP*UP*AP*UP*UP*UP*AP*UP*U)-3') ; 2756.615 1 ? ? ? ? 2 polymer man 'Butyrate response factor 2' 8315.448 1 ? ? ? ? 3 non-polymer syn 'ZINC ION' 65.409 2 ? ? ? ? # _entity_name_com.entity_id 2 _entity_name_com.name 'TIS11D protein, EGF-response factor 2, ERF-2' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polyribonucleotide no no UUAUUUAUU UUAUUUAUU D ? 2 'polypeptide(L)' no no STRYKTELCRPFEESGTCKYGEKCQFAHGFHELRSLTRHPKYKTELCRTFHTIGFCPYGPRCHFIHNADE STRYKTELCRPFEESGTCKYGEKCQFAHGFHELRSLTRHPKYKTELCRTFHTIGFCPYGPRCHFIHNADE A ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 U n 1 2 U n 1 3 A n 1 4 U n 1 5 U n 1 6 U n 1 7 A n 1 8 U n 1 9 U n 2 1 SER n 2 2 THR n 2 3 ARG n 2 4 TYR n 2 5 LYS n 2 6 THR n 2 7 GLU n 2 8 LEU n 2 9 CYS n 2 10 ARG n 2 11 PRO n 2 12 PHE n 2 13 GLU n 2 14 GLU n 2 15 SER n 2 16 GLY n 2 17 THR n 2 18 CYS n 2 19 LYS n 2 20 TYR n 2 21 GLY n 2 22 GLU n 2 23 LYS n 2 24 CYS n 2 25 GLN n 2 26 PHE n 2 27 ALA n 2 28 HIS n 2 29 GLY n 2 30 PHE n 2 31 HIS n 2 32 GLU n 2 33 LEU n 2 34 ARG n 2 35 SER n 2 36 LEU n 2 37 THR n 2 38 ARG n 2 39 HIS n 2 40 PRO n 2 41 LYS n 2 42 TYR n 2 43 LYS n 2 44 THR n 2 45 GLU n 2 46 LEU n 2 47 CYS n 2 48 ARG n 2 49 THR n 2 50 PHE n 2 51 HIS n 2 52 THR n 2 53 ILE n 2 54 GLY n 2 55 PHE n 2 56 CYS n 2 57 PRO n 2 58 TYR n 2 59 GLY n 2 60 PRO n 2 61 ARG n 2 62 CYS n 2 63 HIS n 2 64 PHE n 2 65 ILE n 2 66 HIS n 2 67 ASN n 2 68 ALA n 2 69 ASP n 2 70 GLU n # _entity_src_gen.entity_id 2 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene 'ZFP36L2, BRF2, TIS11D, ERF2' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species 'Escherichia coli' _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET21a _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details Synthetic # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP TISD_HUMAN P47974 2 STRYKTELCRPFEESGTCKYGEKCQFAHGFHELRSLTRHPKYKTELCRTFHTIGFCPYGPRCHFIHNADE 151 ? 2 PDB 1RGO 1RGO 1 ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1RGO A 1 ? 70 ? P47974 151 ? 220 ? 151 220 2 2 1RGO D 1 ? 9 ? 1RGO 1 ? 9 ? 1 9 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 ZN non-polymer . 'ZINC ION' ? 'Zn 2' 65.409 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type 1 1 1 3D_15N-separated_NOESY 2 3 1 3D_13C-separated_NOESY 3 3 1 '3D 13C F1-edited, F3-filtered NOESY' 4 3 1 '2D 13C double-half-filtered NOESY' 5 1 1 HNHA 6 1 1 HNHB 7 3 1 'HACAHB COSY' 8 3 1 '13C-{13CO} spin-echo difference CT-HSQC' 9 3 1 '13C-{15N} spin-echo difference CT-HSQC' 10 4 1 'IPAP-[1H-15N]-HSQC' # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pH 6.2 _pdbx_nmr_exptl_sample_conditions.ionic_strength '20 mM KCl' _pdbx_nmr_exptl_sample_conditions.pressure_units ? _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solvent_system 1 ;0.5 mM 15N-TIS11d TZF; 0.5 mM 5'-UUAUUUAUU-3'; 10 mM Tris pH 6.2; 20 mM KCl; 2.5 mM DTT; 25 uM ZnSO4 ; '95% H2O, 5% D20' 2 ;0.5 mM 15N,13C-TIS11d TZF; 0.5 mM 5'-UUAUUUAUU-3'; 10 mM Tris pH 6.2; 20 mM KCl; 2.5 mM DTT; 25 uM ZnSO4 ; '95% H2O/5% D2O' 3 ;0.5 mM 15N,13C-TIS11d TZF; 0.5 mM 5'-UUAUUUAUU-3'; 10 mM Tris-d11 pD 6.2; 20 mM KCl; 2.5 mM DTT-d10; 25 uM ZnSO4 ; '100% D2O' 4 ;0.5 mM 15N,13C-TIS11d TZF; 0.5 mM 5'-UUAUUUAUU-3'; 10 mM Tris pH 6.2; 20 mM KCl; 2.5 mM DTT; 25 uM ZnSO4; 12 mg/mL Pf1 bacteriophage ; '95% H2O/5% D2O' # loop_ _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.type _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.field_strength 1 ? Bruker AVANCE 600 2 ? Bruker DMX 750 3 ? Bruker AVANCE 900 # _pdbx_nmr_refine.entry_id 1RGO _pdbx_nmr_refine.method ;Individual zinc finger domains were created in DYANA and docked to UAUU (finger I) and UUAUU (finger II) using five rounds of simulated annealing in AMBER using distance and torsional restraints. Finger I/UAUU and Finger II/UUAUU complexes were connected to form TZF/UUAUUUAUU complexes and refined in AMBER with residual dipolar coupling restraints added. Calculations were then switched from in vacuo to Generalized Born continuum solvent model and one additional round of simulated annealing was performed. ; _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.entry_id 1RGO _pdbx_nmr_ensemble.conformers_calculated_total_number 200 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 1RGO _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.classification _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal XwinNMR various collection Bruker 1 NMRPipe ? processing 'Delaglio, F.; Grzesiek, S.; Vuister, G. W.; Zhu, G.; Pfeifer J.; Bax, A.' 2 NMRView 5.0 'data analysis' 'Johnson, B. A. & Blevins, R. A.' 3 SANE ? 'data analysis' 'Duggan, B. M.' 4 DYANA 1.5 'structure solution' 'Guntert, P.; Mumenthaler, C.; Wuthrich, K.' 5 Amber 8 'structure solution' 'Case, D. A., et al.' 6 Amber 8 refinement 'Case, D. A., et al.' 7 # _exptl.entry_id 1RGO _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol ? _exptl_crystal.description ? _exptl_crystal.density_Matthews ? # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type ? # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _struct.entry_id 1RGO _struct.title 'Structural Basis for Recognition of the mRNA Class II AU-Rich Element by the Tandem Zinc Finger Domain of TIS11d' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1RGO _struct_keywords.pdbx_keywords 'RNA BINDING PROTEIN' _struct_keywords.text ;TIS11 TTP tristetraprolin butyrate response factor ERF Nup475 ZFP Zn zinc finger RNA ss single-stranded ARE UTR tandem intercalation intercalate specific, RNA BINDING PROTEIN ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 CYS B 9 ? GLY B 16 ? CYS A 159 GLY A 166 1 ? 8 HELX_P HELX_P2 2 TYR B 20 ? CYS B 24 ? TYR A 170 CYS A 174 5 ? 5 HELX_P HELX_P3 3 GLY B 29 ? LEU B 33 ? GLY A 179 LEU A 183 5 ? 5 HELX_P HELX_P4 4 CYS B 47 ? GLY B 54 ? CYS A 197 GLY A 204 1 ? 8 HELX_P HELX_P5 5 TYR B 58 ? CYS B 62 ? TYR A 208 CYS A 212 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? B CYS 9 SG ? ? ? 1_555 C ZN . ZN ? ? A CYS 159 A ZN 221 1_555 ? ? ? ? ? ? ? 2.299 ? ? metalc2 metalc ? ? B CYS 18 SG ? ? ? 1_555 C ZN . ZN ? ? A CYS 168 A ZN 221 1_555 ? ? ? ? ? ? ? 2.290 ? ? metalc3 metalc ? ? B CYS 24 SG ? ? ? 1_555 C ZN . ZN ? ? A CYS 174 A ZN 221 1_555 ? ? ? ? ? ? ? 2.283 ? ? metalc4 metalc ? ? B HIS 28 NE2 ? ? ? 1_555 C ZN . ZN ? ? A HIS 178 A ZN 221 1_555 ? ? ? ? ? ? ? 2.085 ? ? metalc5 metalc ? ? B CYS 47 SG ? ? ? 1_555 D ZN . ZN ? ? A CYS 197 A ZN 222 1_555 ? ? ? ? ? ? ? 2.299 ? ? metalc6 metalc ? ? B CYS 56 SG ? ? ? 1_555 D ZN . ZN ? ? A CYS 206 A ZN 222 1_555 ? ? ? ? ? ? ? 2.292 ? ? metalc7 metalc ? ? B CYS 62 SG ? ? ? 1_555 D ZN . ZN ? ? A CYS 212 A ZN 222 1_555 ? ? ? ? ? ? ? 2.285 ? ? metalc8 metalc ? ? B HIS 66 NE2 ? ? ? 1_555 D ZN . ZN ? ? A HIS 216 A ZN 222 1_555 ? ? ? ? ? ? ? 2.080 ? ? # _struct_conn_type.id metalc _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A ZN 221 ? 4 'BINDING SITE FOR RESIDUE ZN A 221' AC2 Software A ZN 222 ? 4 'BINDING SITE FOR RESIDUE ZN A 222' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 CYS B 9 ? CYS A 159 . ? 1_555 ? 2 AC1 4 CYS B 18 ? CYS A 168 . ? 1_555 ? 3 AC1 4 CYS B 24 ? CYS A 174 . ? 1_555 ? 4 AC1 4 HIS B 28 ? HIS A 178 . ? 1_555 ? 5 AC2 4 CYS B 47 ? CYS A 197 . ? 1_555 ? 6 AC2 4 CYS B 56 ? CYS A 206 . ? 1_555 ? 7 AC2 4 CYS B 62 ? CYS A 212 . ? 1_555 ? 8 AC2 4 HIS B 66 ? HIS A 216 . ? 1_555 ? # _database_PDB_matrix.entry_id 1RGO _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1RGO _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O P S ZN # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 U 1 1 1 U U D . n A 1 2 U 2 2 2 U U D . n A 1 3 A 3 3 3 A A D . n A 1 4 U 4 4 4 U U D . n A 1 5 U 5 5 5 U U D . n A 1 6 U 6 6 6 U U D . n A 1 7 A 7 7 7 A A D . n A 1 8 U 8 8 8 U U D . n A 1 9 U 9 9 9 U U D . n B 2 1 SER 1 151 151 SER SER A . n B 2 2 THR 2 152 152 THR THR A . n B 2 3 ARG 3 153 153 ARG ARG A . n B 2 4 TYR 4 154 154 TYR TYR A . n B 2 5 LYS 5 155 155 LYS LYS A . n B 2 6 THR 6 156 156 THR THR A . n B 2 7 GLU 7 157 157 GLU GLU A . n B 2 8 LEU 8 158 158 LEU LEU A . n B 2 9 CYS 9 159 159 CYS CYS A . n B 2 10 ARG 10 160 160 ARG ARG A . n B 2 11 PRO 11 161 161 PRO PRO A . n B 2 12 PHE 12 162 162 PHE PHE A . n B 2 13 GLU 13 163 163 GLU GLU A . n B 2 14 GLU 14 164 164 GLU GLU A . n B 2 15 SER 15 165 165 SER SER A . n B 2 16 GLY 16 166 166 GLY GLY A . n B 2 17 THR 17 167 167 THR THR A . n B 2 18 CYS 18 168 168 CYS CYS A . n B 2 19 LYS 19 169 169 LYS LYS A . n B 2 20 TYR 20 170 170 TYR TYR A . n B 2 21 GLY 21 171 171 GLY GLY A . n B 2 22 GLU 22 172 172 GLU GLU A . n B 2 23 LYS 23 173 173 LYS LYS A . n B 2 24 CYS 24 174 174 CYS CYS A . n B 2 25 GLN 25 175 175 GLN GLN A . n B 2 26 PHE 26 176 176 PHE PHE A . n B 2 27 ALA 27 177 177 ALA ALA A . n B 2 28 HIS 28 178 178 HIS HIS A . n B 2 29 GLY 29 179 179 GLY GLY A . n B 2 30 PHE 30 180 180 PHE PHE A . n B 2 31 HIS 31 181 181 HIS HIS A . n B 2 32 GLU 32 182 182 GLU GLU A . n B 2 33 LEU 33 183 183 LEU LEU A . n B 2 34 ARG 34 184 184 ARG ARG A . n B 2 35 SER 35 185 185 SER SER A . n B 2 36 LEU 36 186 186 LEU LEU A . n B 2 37 THR 37 187 187 THR THR A . n B 2 38 ARG 38 188 188 ARG ARG A . n B 2 39 HIS 39 189 189 HIS HIS A . n B 2 40 PRO 40 190 190 PRO PRO A . n B 2 41 LYS 41 191 191 LYS LYS A . n B 2 42 TYR 42 192 192 TYR TYR A . n B 2 43 LYS 43 193 193 LYS LYS A . n B 2 44 THR 44 194 194 THR THR A . n B 2 45 GLU 45 195 195 GLU GLU A . n B 2 46 LEU 46 196 196 LEU LEU A . n B 2 47 CYS 47 197 197 CYS CYS A . n B 2 48 ARG 48 198 198 ARG ARG A . n B 2 49 THR 49 199 199 THR THR A . n B 2 50 PHE 50 200 200 PHE PHE A . n B 2 51 HIS 51 201 201 HIS HIS A . n B 2 52 THR 52 202 202 THR THR A . n B 2 53 ILE 53 203 203 ILE ILE A . n B 2 54 GLY 54 204 204 GLY GLY A . n B 2 55 PHE 55 205 205 PHE PHE A . n B 2 56 CYS 56 206 206 CYS CYS A . n B 2 57 PRO 57 207 207 PRO PRO A . n B 2 58 TYR 58 208 208 TYR TYR A . n B 2 59 GLY 59 209 209 GLY GLY A . n B 2 60 PRO 60 210 210 PRO PRO A . n B 2 61 ARG 61 211 211 ARG ARG A . n B 2 62 CYS 62 212 212 CYS CYS A . n B 2 63 HIS 63 213 213 HIS HIS A . n B 2 64 PHE 64 214 214 PHE PHE A . n B 2 65 ILE 65 215 215 ILE ILE A . n B 2 66 HIS 66 216 216 HIS HIS A . n B 2 67 ASN 67 217 217 ASN ASN A . n B 2 68 ALA 68 218 218 ALA ALA A . n B 2 69 ASP 69 219 219 ASP ASP A . n B 2 70 GLU 70 220 220 GLU GLU A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ZN 1 221 1 ZN ZN A . D 3 ZN 1 222 1 ZN ZN A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 SG ? B CYS 9 ? A CYS 159 ? 1_555 ZN ? C ZN . ? A ZN 221 ? 1_555 SG ? B CYS 18 ? A CYS 168 ? 1_555 112.1 ? 2 SG ? B CYS 9 ? A CYS 159 ? 1_555 ZN ? C ZN . ? A ZN 221 ? 1_555 SG ? B CYS 24 ? A CYS 174 ? 1_555 108.5 ? 3 SG ? B CYS 18 ? A CYS 168 ? 1_555 ZN ? C ZN . ? A ZN 221 ? 1_555 SG ? B CYS 24 ? A CYS 174 ? 1_555 108.1 ? 4 SG ? B CYS 9 ? A CYS 159 ? 1_555 ZN ? C ZN . ? A ZN 221 ? 1_555 NE2 ? B HIS 28 ? A HIS 178 ? 1_555 112.2 ? 5 SG ? B CYS 18 ? A CYS 168 ? 1_555 ZN ? C ZN . ? A ZN 221 ? 1_555 NE2 ? B HIS 28 ? A HIS 178 ? 1_555 107.3 ? 6 SG ? B CYS 24 ? A CYS 174 ? 1_555 ZN ? C ZN . ? A ZN 221 ? 1_555 NE2 ? B HIS 28 ? A HIS 178 ? 1_555 108.5 ? 7 SG ? B CYS 47 ? A CYS 197 ? 1_555 ZN ? D ZN . ? A ZN 222 ? 1_555 SG ? B CYS 56 ? A CYS 206 ? 1_555 111.1 ? 8 SG ? B CYS 47 ? A CYS 197 ? 1_555 ZN ? D ZN . ? A ZN 222 ? 1_555 SG ? B CYS 62 ? A CYS 212 ? 1_555 109.6 ? 9 SG ? B CYS 56 ? A CYS 206 ? 1_555 ZN ? D ZN . ? A ZN 222 ? 1_555 SG ? B CYS 62 ? A CYS 212 ? 1_555 110.4 ? 10 SG ? B CYS 47 ? A CYS 197 ? 1_555 ZN ? D ZN . ? A ZN 222 ? 1_555 NE2 ? B HIS 66 ? A HIS 216 ? 1_555 111.8 ? 11 SG ? B CYS 56 ? A CYS 206 ? 1_555 ZN ? D ZN . ? A ZN 222 ? 1_555 NE2 ? B HIS 66 ? A HIS 216 ? 1_555 107.2 ? 12 SG ? B CYS 62 ? A CYS 212 ? 1_555 ZN ? D ZN . ? A ZN 222 ? 1_555 NE2 ? B HIS 66 ? A HIS 216 ? 1_555 106.6 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2004-03-02 2 'Structure model' 1 1 2008-04-29 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-03-02 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_nmr_software 3 4 'Structure model' pdbx_nmr_spectrometer 4 4 'Structure model' pdbx_struct_assembly 5 4 'Structure model' pdbx_struct_conn_angle 6 4 'Structure model' pdbx_struct_oper_list 7 4 'Structure model' struct_conn 8 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_nmr_software.name' 4 4 'Structure model' '_pdbx_nmr_spectrometer.model' 5 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 6 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 7 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 8 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 9 4 'Structure model' '_pdbx_struct_conn_angle.value' 10 4 'Structure model' '_struct_conn.pdbx_dist_value' 11 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 12 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 13 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 14 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 15 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 16 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 17 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 18 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 19 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 20 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 21 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 22 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' 23 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 24 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 25 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 C4 D A 3 ? ? C5 D A 3 ? ? C6 D A 3 ? ? 113.98 117.00 -3.02 0.50 N 2 1 C5 D A 3 ? ? C6 D A 3 ? ? N1 D A 3 ? ? 121.31 117.70 3.61 0.50 N 3 1 N1 D A 3 ? ? C6 D A 3 ? ? N6 D A 3 ? ? 113.42 118.60 -5.18 0.60 N 4 1 C4 D A 7 ? ? C5 D A 7 ? ? C6 D A 7 ? ? 113.91 117.00 -3.09 0.50 N 5 1 C5 D A 7 ? ? C6 D A 7 ? ? N1 D A 7 ? ? 121.61 117.70 3.91 0.50 N 6 1 N1 D A 7 ? ? C6 D A 7 ? ? N6 D A 7 ? ? 114.44 118.60 -4.16 0.60 N 7 1 NE A ARG 184 ? ? CZ A ARG 184 ? ? NH1 A ARG 184 ? ? 123.45 120.30 3.15 0.50 N 8 2 C5 D A 3 ? ? C6 D A 3 ? ? N1 D A 3 ? ? 121.36 117.70 3.66 0.50 N 9 2 N1 D A 3 ? ? C6 D A 3 ? ? N6 D A 3 ? ? 113.76 118.60 -4.84 0.60 N 10 2 C4 D A 7 ? ? C5 D A 7 ? ? C6 D A 7 ? ? 113.85 117.00 -3.15 0.50 N 11 2 C5 D A 7 ? ? C6 D A 7 ? ? N1 D A 7 ? ? 121.64 117.70 3.94 0.50 N 12 2 N1 D A 7 ? ? C6 D A 7 ? ? N6 D A 7 ? ? 114.29 118.60 -4.31 0.60 N 13 3 C4 D A 3 ? ? C5 D A 3 ? ? C6 D A 3 ? ? 113.87 117.00 -3.13 0.50 N 14 3 C5 D A 3 ? ? C6 D A 3 ? ? N1 D A 3 ? ? 121.26 117.70 3.56 0.50 N 15 3 N1 D A 3 ? ? C6 D A 3 ? ? N6 D A 3 ? ? 113.28 118.60 -5.32 0.60 N 16 3 C4 D A 7 ? ? C5 D A 7 ? ? C6 D A 7 ? ? 113.91 117.00 -3.09 0.50 N 17 3 C5 D A 7 ? ? C6 D A 7 ? ? N1 D A 7 ? ? 121.69 117.70 3.99 0.50 N 18 3 N1 D A 7 ? ? C6 D A 7 ? ? N6 D A 7 ? ? 114.30 118.60 -4.30 0.60 N 19 3 "O4'" D U 8 ? ? "C1'" D U 8 ? ? N1 D U 8 ? ? 112.81 108.50 4.31 0.70 N 20 3 NE A ARG 188 ? ? CZ A ARG 188 ? ? NH1 A ARG 188 ? ? 123.44 120.30 3.14 0.50 N 21 3 NE A ARG 198 ? ? CZ A ARG 198 ? ? NH1 A ARG 198 ? ? 123.51 120.30 3.21 0.50 N 22 4 C4 D A 3 ? ? C5 D A 3 ? ? C6 D A 3 ? ? 113.70 117.00 -3.30 0.50 N 23 4 C5 D A 3 ? ? C6 D A 3 ? ? N1 D A 3 ? ? 121.17 117.70 3.47 0.50 N 24 4 N1 D A 3 ? ? C6 D A 3 ? ? N6 D A 3 ? ? 113.23 118.60 -5.37 0.60 N 25 4 "O4'" D U 4 ? ? "C1'" D U 4 ? ? N1 D U 4 ? ? 113.35 108.50 4.85 0.70 N 26 4 "C1'" D U 6 ? ? "O4'" D U 6 ? ? "C4'" D U 6 ? ? 105.41 109.70 -4.29 0.70 N 27 4 "O4'" D U 6 ? ? "C1'" D U 6 ? ? N1 D U 6 ? ? 113.93 108.50 5.43 0.70 N 28 4 C5 D A 7 ? ? C6 D A 7 ? ? N1 D A 7 ? ? 121.59 117.70 3.89 0.50 N 29 4 N1 D A 7 ? ? C6 D A 7 ? ? N6 D A 7 ? ? 114.24 118.60 -4.36 0.60 N 30 4 NE A ARG 153 ? ? CZ A ARG 153 ? ? NH1 A ARG 153 ? ? 123.39 120.30 3.09 0.50 N 31 5 C4 D A 3 ? ? C5 D A 3 ? ? C6 D A 3 ? ? 113.82 117.00 -3.18 0.50 N 32 5 C5 D A 3 ? ? C6 D A 3 ? ? N1 D A 3 ? ? 121.23 117.70 3.53 0.50 N 33 5 N1 D A 3 ? ? C6 D A 3 ? ? N6 D A 3 ? ? 113.12 118.60 -5.48 0.60 N 34 5 "O4'" D U 6 ? ? "C1'" D U 6 ? ? N1 D U 6 ? ? 112.73 108.50 4.23 0.70 N 35 5 C4 D A 7 ? ? C5 D A 7 ? ? C6 D A 7 ? ? 113.98 117.00 -3.02 0.50 N 36 5 C5 D A 7 ? ? C6 D A 7 ? ? N1 D A 7 ? ? 121.43 117.70 3.73 0.50 N 37 5 N1 D A 7 ? ? C6 D A 7 ? ? N6 D A 7 ? ? 114.31 118.60 -4.29 0.60 N 38 5 "O4'" D U 8 ? ? "C1'" D U 8 ? ? N1 D U 8 ? ? 113.10 108.50 4.60 0.70 N 39 6 "C1'" D U 2 ? ? "O4'" D U 2 ? ? "C4'" D U 2 ? ? 104.74 109.70 -4.96 0.70 N 40 6 "O4'" D U 2 ? ? "C1'" D U 2 ? ? N1 D U 2 ? ? 113.89 108.50 5.39 0.70 N 41 6 C4 D A 3 ? ? C5 D A 3 ? ? C6 D A 3 ? ? 113.92 117.00 -3.08 0.50 N 42 6 C5 D A 3 ? ? C6 D A 3 ? ? N1 D A 3 ? ? 121.36 117.70 3.66 0.50 N 43 6 N1 D A 3 ? ? C6 D A 3 ? ? N6 D A 3 ? ? 113.53 118.60 -5.07 0.60 N 44 6 C5 D A 7 ? ? C6 D A 7 ? ? N1 D A 7 ? ? 121.52 117.70 3.82 0.50 N 45 6 N1 D A 7 ? ? C6 D A 7 ? ? N6 D A 7 ? ? 114.21 118.60 -4.39 0.60 N 46 6 NE A ARG 184 ? ? CZ A ARG 184 ? ? NH1 A ARG 184 ? ? 123.70 120.30 3.40 0.50 N 47 6 NE A ARG 198 ? ? CZ A ARG 198 ? ? NH1 A ARG 198 ? ? 123.73 120.30 3.43 0.50 N 48 7 "O4'" D U 2 ? ? "C1'" D U 2 ? ? N1 D U 2 ? ? 112.85 108.50 4.35 0.70 N 49 7 C5 D A 3 ? ? C6 D A 3 ? ? N1 D A 3 ? ? 121.12 117.70 3.42 0.50 N 50 7 N1 D A 3 ? ? C6 D A 3 ? ? N6 D A 3 ? ? 113.45 118.60 -5.15 0.60 N 51 7 C5 D A 7 ? ? C6 D A 7 ? ? N1 D A 7 ? ? 121.43 117.70 3.73 0.50 N 52 7 N1 D A 7 ? ? C6 D A 7 ? ? N6 D A 7 ? ? 113.87 118.60 -4.73 0.60 N 53 7 NE A ARG 153 ? ? CZ A ARG 153 ? ? NH1 A ARG 153 ? ? 123.51 120.30 3.21 0.50 N 54 7 NE A ARG 211 ? ? CZ A ARG 211 ? ? NH1 A ARG 211 ? ? 123.59 120.30 3.29 0.50 N 55 8 C5 D A 3 ? ? C6 D A 3 ? ? N1 D A 3 ? ? 121.07 117.70 3.37 0.50 N 56 8 N1 D A 3 ? ? C6 D A 3 ? ? N6 D A 3 ? ? 113.87 118.60 -4.73 0.60 N 57 8 C4 D A 7 ? ? C5 D A 7 ? ? C6 D A 7 ? ? 113.92 117.00 -3.08 0.50 N 58 8 C5 D A 7 ? ? C6 D A 7 ? ? N1 D A 7 ? ? 121.45 117.70 3.75 0.50 N 59 8 N1 D A 7 ? ? C6 D A 7 ? ? N6 D A 7 ? ? 113.64 118.60 -4.96 0.60 N 60 8 NE A ARG 188 ? ? CZ A ARG 188 ? ? NH1 A ARG 188 ? ? 123.71 120.30 3.41 0.50 N 61 8 NE A ARG 211 ? ? CZ A ARG 211 ? ? NH1 A ARG 211 ? ? 123.87 120.30 3.57 0.50 N 62 9 C4 D A 3 ? ? C5 D A 3 ? ? C6 D A 3 ? ? 113.95 117.00 -3.05 0.50 N 63 9 C5 D A 3 ? ? C6 D A 3 ? ? N1 D A 3 ? ? 121.41 117.70 3.71 0.50 N 64 9 N1 D A 3 ? ? C6 D A 3 ? ? N6 D A 3 ? ? 113.25 118.60 -5.35 0.60 N 65 9 C5 D A 7 ? ? C6 D A 7 ? ? N1 D A 7 ? ? 121.33 117.70 3.63 0.50 N 66 9 N1 D A 7 ? ? C6 D A 7 ? ? N6 D A 7 ? ? 114.38 118.60 -4.22 0.60 N 67 9 NE A ARG 198 ? ? CZ A ARG 198 ? ? NH1 A ARG 198 ? ? 124.34 120.30 4.04 0.50 N 68 10 C5 D A 3 ? ? C6 D A 3 ? ? N1 D A 3 ? ? 121.38 117.70 3.68 0.50 N 69 10 N1 D A 3 ? ? C6 D A 3 ? ? N6 D A 3 ? ? 113.67 118.60 -4.93 0.60 N 70 10 C4 D A 7 ? ? C5 D A 7 ? ? C6 D A 7 ? ? 113.89 117.00 -3.11 0.50 N 71 10 C5 D A 7 ? ? C6 D A 7 ? ? N1 D A 7 ? ? 121.55 117.70 3.85 0.50 N 72 10 N1 D A 7 ? ? C6 D A 7 ? ? N6 D A 7 ? ? 113.96 118.60 -4.64 0.60 N 73 11 "O4'" D U 2 ? ? "C1'" D U 2 ? ? N1 D U 2 ? ? 113.23 108.50 4.73 0.70 N 74 11 C4 D A 3 ? ? C5 D A 3 ? ? C6 D A 3 ? ? 113.96 117.00 -3.04 0.50 N 75 11 C5 D A 3 ? ? C6 D A 3 ? ? N1 D A 3 ? ? 121.27 117.70 3.57 0.50 N 76 11 N1 D A 3 ? ? C6 D A 3 ? ? N6 D A 3 ? ? 113.80 118.60 -4.80 0.60 N 77 11 C5 D A 7 ? ? C6 D A 7 ? ? N1 D A 7 ? ? 121.59 117.70 3.89 0.50 N 78 11 N1 D A 7 ? ? C6 D A 7 ? ? N6 D A 7 ? ? 114.26 118.60 -4.34 0.60 N 79 11 NE A ARG 153 ? ? CZ A ARG 153 ? ? NH1 A ARG 153 ? ? 123.86 120.30 3.56 0.50 N 80 12 C4 D A 3 ? ? C5 D A 3 ? ? C6 D A 3 ? ? 113.92 117.00 -3.08 0.50 N 81 12 C5 D A 3 ? ? C6 D A 3 ? ? N1 D A 3 ? ? 121.24 117.70 3.54 0.50 N 82 12 N1 D A 3 ? ? C6 D A 3 ? ? N6 D A 3 ? ? 114.15 118.60 -4.45 0.60 N 83 12 C5 D A 7 ? ? C6 D A 7 ? ? N1 D A 7 ? ? 121.55 117.70 3.85 0.50 N 84 12 N1 D A 7 ? ? C6 D A 7 ? ? N6 D A 7 ? ? 114.06 118.60 -4.54 0.60 N 85 12 NE A ARG 184 ? ? CZ A ARG 184 ? ? NH1 A ARG 184 ? ? 123.91 120.30 3.61 0.50 N 86 12 NE A ARG 211 ? ? CZ A ARG 211 ? ? NH1 A ARG 211 ? ? 124.04 120.30 3.74 0.50 N 87 13 C4 D A 3 ? ? C5 D A 3 ? ? C6 D A 3 ? ? 113.83 117.00 -3.17 0.50 N 88 13 C5 D A 3 ? ? C6 D A 3 ? ? N1 D A 3 ? ? 121.25 117.70 3.55 0.50 N 89 13 N1 D A 3 ? ? C6 D A 3 ? ? N6 D A 3 ? ? 113.54 118.60 -5.06 0.60 N 90 13 C4 D A 7 ? ? C5 D A 7 ? ? C6 D A 7 ? ? 113.78 117.00 -3.22 0.50 N 91 13 C5 D A 7 ? ? C6 D A 7 ? ? N1 D A 7 ? ? 121.78 117.70 4.08 0.50 N 92 13 N1 D A 7 ? ? C6 D A 7 ? ? N6 D A 7 ? ? 113.82 118.60 -4.78 0.60 N 93 13 NE A ARG 160 ? ? CZ A ARG 160 ? ? NH1 A ARG 160 ? ? 123.31 120.30 3.01 0.50 N 94 13 NE A ARG 188 ? ? CZ A ARG 188 ? ? NH1 A ARG 188 ? ? 123.30 120.30 3.00 0.50 N 95 14 C4 D A 3 ? ? C5 D A 3 ? ? C6 D A 3 ? ? 113.82 117.00 -3.18 0.50 N 96 14 C5 D A 3 ? ? C6 D A 3 ? ? N1 D A 3 ? ? 121.40 117.70 3.70 0.50 N 97 14 N1 D A 3 ? ? C6 D A 3 ? ? N6 D A 3 ? ? 113.40 118.60 -5.20 0.60 N 98 14 C5 D A 7 ? ? C6 D A 7 ? ? N1 D A 7 ? ? 121.40 117.70 3.70 0.50 N 99 14 N1 D A 7 ? ? C6 D A 7 ? ? N6 D A 7 ? ? 113.59 118.60 -5.01 0.60 N 100 14 "O4'" D U 8 ? ? "C1'" D U 8 ? ? N1 D U 8 ? ? 112.73 108.50 4.23 0.70 N 101 14 NE A ARG 184 ? ? CZ A ARG 184 ? ? NH1 A ARG 184 ? ? 123.35 120.30 3.05 0.50 N 102 15 "O4'" D U 2 ? ? "C1'" D U 2 ? ? N1 D U 2 ? ? 115.05 108.50 6.55 0.70 N 103 15 N3 D U 2 ? ? C2 D U 2 ? ? O2 D U 2 ? ? 117.57 122.20 -4.63 0.70 N 104 15 C4 D A 3 ? ? C5 D A 3 ? ? C6 D A 3 ? ? 113.82 117.00 -3.18 0.50 N 105 15 C5 D A 3 ? ? C6 D A 3 ? ? N1 D A 3 ? ? 121.17 117.70 3.47 0.50 N 106 15 N1 D A 3 ? ? C6 D A 3 ? ? N6 D A 3 ? ? 112.81 118.60 -5.79 0.60 N 107 15 C4 D A 7 ? ? C5 D A 7 ? ? C6 D A 7 ? ? 113.96 117.00 -3.04 0.50 N 108 15 C5 D A 7 ? ? C6 D A 7 ? ? N1 D A 7 ? ? 121.52 117.70 3.82 0.50 N 109 15 N1 D A 7 ? ? C6 D A 7 ? ? N6 D A 7 ? ? 114.03 118.60 -4.57 0.60 N 110 16 "O4'" D U 2 ? ? "C1'" D U 2 ? ? N1 D U 2 ? ? 113.44 108.50 4.94 0.70 N 111 16 C4 D A 3 ? ? C5 D A 3 ? ? C6 D A 3 ? ? 113.87 117.00 -3.13 0.50 N 112 16 C5 D A 3 ? ? C6 D A 3 ? ? N1 D A 3 ? ? 121.31 117.70 3.61 0.50 N 113 16 N1 D A 3 ? ? C6 D A 3 ? ? N6 D A 3 ? ? 113.41 118.60 -5.19 0.60 N 114 16 C4 D A 7 ? ? C5 D A 7 ? ? C6 D A 7 ? ? 113.89 117.00 -3.11 0.50 N 115 16 C5 D A 7 ? ? C6 D A 7 ? ? N1 D A 7 ? ? 121.66 117.70 3.96 0.50 N 116 16 N1 D A 7 ? ? C6 D A 7 ? ? N6 D A 7 ? ? 114.14 118.60 -4.46 0.60 N 117 17 C4 D A 3 ? ? C5 D A 3 ? ? C6 D A 3 ? ? 113.94 117.00 -3.06 0.50 N 118 17 C5 D A 3 ? ? C6 D A 3 ? ? N1 D A 3 ? ? 121.32 117.70 3.62 0.50 N 119 17 N1 D A 3 ? ? C6 D A 3 ? ? N6 D A 3 ? ? 113.51 118.60 -5.09 0.60 N 120 17 C5 D A 7 ? ? C6 D A 7 ? ? N1 D A 7 ? ? 121.55 117.70 3.85 0.50 N 121 17 N1 D A 7 ? ? C6 D A 7 ? ? N6 D A 7 ? ? 114.23 118.60 -4.37 0.60 N 122 18 C4 D A 3 ? ? C5 D A 3 ? ? C6 D A 3 ? ? 113.77 117.00 -3.23 0.50 N 123 18 C5 D A 3 ? ? C6 D A 3 ? ? N1 D A 3 ? ? 121.12 117.70 3.42 0.50 N 124 18 N1 D A 3 ? ? C6 D A 3 ? ? N6 D A 3 ? ? 113.32 118.60 -5.28 0.60 N 125 18 C5 D A 7 ? ? C6 D A 7 ? ? N1 D A 7 ? ? 121.36 117.70 3.66 0.50 N 126 18 N1 D A 7 ? ? C6 D A 7 ? ? N6 D A 7 ? ? 113.88 118.60 -4.72 0.60 N 127 18 "O4'" D U 8 ? ? "C1'" D U 8 ? ? N1 D U 8 ? ? 113.13 108.50 4.63 0.70 N 128 18 NE A ARG 153 ? ? CZ A ARG 153 ? ? NH1 A ARG 153 ? ? 124.03 120.30 3.73 0.50 N 129 18 NE A ARG 184 ? ? CZ A ARG 184 ? ? NH1 A ARG 184 ? ? 123.53 120.30 3.23 0.50 N 130 19 C4 D A 3 ? ? C5 D A 3 ? ? C6 D A 3 ? ? 113.77 117.00 -3.23 0.50 N 131 19 C5 D A 3 ? ? C6 D A 3 ? ? N1 D A 3 ? ? 121.28 117.70 3.58 0.50 N 132 19 N1 D A 3 ? ? C6 D A 3 ? ? N6 D A 3 ? ? 113.33 118.60 -5.27 0.60 N 133 19 C5 D A 7 ? ? C6 D A 7 ? ? N1 D A 7 ? ? 121.40 117.70 3.70 0.50 N 134 19 N1 D A 7 ? ? C6 D A 7 ? ? N6 D A 7 ? ? 114.08 118.60 -4.52 0.60 N 135 19 NE A ARG 188 ? ? CZ A ARG 188 ? ? NH1 A ARG 188 ? ? 123.37 120.30 3.07 0.50 N 136 20 C4 D A 3 ? ? C5 D A 3 ? ? C6 D A 3 ? ? 113.87 117.00 -3.13 0.50 N 137 20 C5 D A 3 ? ? C6 D A 3 ? ? N1 D A 3 ? ? 121.10 117.70 3.40 0.50 N 138 20 N1 D A 3 ? ? C6 D A 3 ? ? N6 D A 3 ? ? 113.01 118.60 -5.59 0.60 N 139 20 C5 D A 7 ? ? C6 D A 7 ? ? N1 D A 7 ? ? 121.48 117.70 3.78 0.50 N 140 20 N1 D A 7 ? ? C6 D A 7 ? ? N6 D A 7 ? ? 114.58 118.60 -4.02 0.60 N 141 20 "O4'" D U 8 ? ? "C1'" D U 8 ? ? N1 D U 8 ? ? 112.87 108.50 4.37 0.70 N 142 20 NE A ARG 188 ? ? CZ A ARG 188 ? ? NH1 A ARG 188 ? ? 123.56 120.30 3.26 0.50 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 HIS A 216 ? ? -88.59 -94.09 2 2 HIS A 216 ? ? -86.65 -95.01 3 3 HIS A 216 ? ? -89.64 -95.75 4 4 HIS A 216 ? ? -91.70 -95.62 5 5 HIS A 216 ? ? -85.98 -90.23 6 6 HIS A 216 ? ? -93.46 -93.96 7 7 HIS A 216 ? ? -96.00 -97.28 8 8 HIS A 216 ? ? -89.38 -95.26 9 9 HIS A 216 ? ? -83.77 -97.29 10 10 HIS A 216 ? ? -87.19 -98.46 11 11 HIS A 216 ? ? -90.71 -95.26 12 12 HIS A 216 ? ? -82.79 -92.57 13 12 ALA A 218 ? ? -69.33 97.24 14 13 HIS A 216 ? ? -89.72 -94.61 15 14 HIS A 216 ? ? -87.24 -97.53 16 15 HIS A 216 ? ? -90.72 -94.50 17 16 HIS A 216 ? ? -89.80 -94.50 18 17 ARG A 153 ? ? -82.20 42.08 19 17 HIS A 216 ? ? -88.52 -89.17 20 18 HIS A 216 ? ? -89.54 -87.30 21 18 ALA A 218 ? ? -92.35 -94.51 22 19 HIS A 216 ? ? -82.79 -89.78 23 20 ARG A 153 ? ? -81.10 41.66 24 20 HIS A 216 ? ? -91.74 -87.72 # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 A D 7 ? ? 0.096 'SIDE CHAIN' 2 2 U D 5 ? ? 0.072 'SIDE CHAIN' 3 2 A D 7 ? ? 0.074 'SIDE CHAIN' 4 4 U D 4 ? ? 0.079 'SIDE CHAIN' 5 4 U D 5 ? ? 0.057 'SIDE CHAIN' 6 4 A D 7 ? ? 0.077 'SIDE CHAIN' 7 6 A D 3 ? ? 0.057 'SIDE CHAIN' 8 6 A D 7 ? ? 0.062 'SIDE CHAIN' 9 7 U D 5 ? ? 0.079 'SIDE CHAIN' 10 7 A D 7 ? ? 0.113 'SIDE CHAIN' 11 8 A D 3 ? ? 0.082 'SIDE CHAIN' 12 8 U D 6 ? ? 0.071 'SIDE CHAIN' 13 8 A D 7 ? ? 0.077 'SIDE CHAIN' 14 9 A D 7 ? ? 0.084 'SIDE CHAIN' 15 10 U D 2 ? ? 0.069 'SIDE CHAIN' 16 10 U D 6 ? ? 0.062 'SIDE CHAIN' 17 10 A D 7 ? ? 0.070 'SIDE CHAIN' 18 11 U D 2 ? ? 0.072 'SIDE CHAIN' 19 11 A D 3 ? ? 0.061 'SIDE CHAIN' 20 11 U D 6 ? ? 0.097 'SIDE CHAIN' 21 11 A D 7 ? ? 0.066 'SIDE CHAIN' 22 12 A D 3 ? ? 0.092 'SIDE CHAIN' 23 12 U D 6 ? ? 0.075 'SIDE CHAIN' 24 12 A D 7 ? ? 0.064 'SIDE CHAIN' 25 13 U D 6 ? ? 0.066 'SIDE CHAIN' 26 13 TYR A 170 ? ? 0.077 'SIDE CHAIN' 27 14 U D 2 ? ? 0.071 'SIDE CHAIN' 28 14 U D 6 ? ? 0.079 'SIDE CHAIN' 29 14 A D 7 ? ? 0.100 'SIDE CHAIN' 30 15 U D 2 ? ? 0.149 'SIDE CHAIN' 31 15 A D 7 ? ? 0.069 'SIDE CHAIN' 32 16 U D 2 ? ? 0.076 'SIDE CHAIN' 33 16 A D 7 ? ? 0.058 'SIDE CHAIN' 34 17 U D 6 ? ? 0.078 'SIDE CHAIN' 35 17 A D 7 ? ? 0.081 'SIDE CHAIN' 36 18 U D 6 ? ? 0.058 'SIDE CHAIN' 37 18 A D 7 ? ? 0.071 'SIDE CHAIN' 38 19 U D 6 ? ? 0.080 'SIDE CHAIN' 39 19 A D 7 ? ? 0.070 'SIDE CHAIN' 40 20 A D 3 ? ? 0.084 'SIDE CHAIN' 41 20 U D 6 ? ? 0.079 'SIDE CHAIN' 42 20 A D 7 ? ? 0.074 'SIDE CHAIN' # _pdbx_entity_nonpoly.entity_id 3 _pdbx_entity_nonpoly.name 'ZINC ION' _pdbx_entity_nonpoly.comp_id ZN #