HEADER ELECTRON TRANSPORT 23-FEB-96 1RIE TITLE STRUCTURE OF A WATER SOLUBLE FRAGMENT OF THE RIESKE IRON- TITLE 2 SULFUR PROTEIN OF THE BOVINE HEART MITOCHONDRIAL TITLE 3 CYTOCHROME BC1-COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: RIESKE IRON-SULFUR PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SOLUBLE FRAGMENT; COMPND 5 SYNONYM: UBIQUINOL-CYTOCHROME C REDUCTASE IRON-SULFUR; COMPND 6 EC: 1.10.2.2 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BOS TAURUS; SOURCE 3 ORGANISM_COMMON: CATTLE; SOURCE 4 ORGANISM_TAXID: 9913; SOURCE 5 ORGAN: HEART; SOURCE 6 ORGANELLE: MITOCHONDRIA KEYWDS OXIDOREDUCTASE, CYTOCHROME BC1 COMPLEX, HISTIDINE LIGANDS, KEYWDS 2 RIESKE IRON-SULFUR CLUSTER, ELECTRON TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR S.IWATA,M.SAYNOVITS,T.A.LINK,H.MICHEL REVDAT 2 24-FEB-09 1RIE 1 VERSN REVDAT 1 07-DEC-96 1RIE 0 JRNL AUTH S.IWATA,M.SAYNOVITS,T.A.LINK,H.MICHEL JRNL TITL STRUCTURE OF A WATER SOLUBLE FRAGMENT OF THE JRNL TITL 2 'RIESKE' IRON-SULFUR PROTEIN OF THE BOVINE HEART JRNL TITL 3 MITOCHONDRIAL CYTOCHROME BC1 COMPLEX DETERMINED BY JRNL TITL 4 MAD PHASING AT 1.5 A RESOLUTION. JRNL REF STRUCTURE V. 4 567 1996 JRNL REFN ISSN 0969-2126 JRNL PMID 8736555 JRNL DOI 10.1016/S0969-2126(96)00062-7 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH T.A.LINK,M.SAYNOVITS,C.ASSMANN,S.IWATA,T.OHNISHI, REMARK 1 AUTH 2 G.VON JAGOW REMARK 1 TITL ISOLATION, CHARACTERISATION AND CRYSTALLISATION OF REMARK 1 TITL 2 A WATER-SOLUBLE FRAGMENT OF THE RIESKE IRON-SULFUR REMARK 1 TITL 3 PROTEIN OF BOVINE HEART MITOCHONDRIAL BC1 COMPLEX REMARK 1 REF EUR.J.BIOCHEM. V. 237 71 1996 REMARK 1 REFN ISSN 0014-2956 REMARK 1 REFERENCE 2 REMARK 1 AUTH U.BRANDT,L.YU,C.A.YU,B.L.TRUMPOWER REMARK 1 TITL THE MITOCHONDRIAL TARGETING PRESEQUENCE OF THE REMARK 1 TITL 2 RIESKE IRON-SULFUR PROTEIN IS PROCESSED IN A REMARK 1 TITL 3 SINGLE STEP AFTER INSERTION INTO THE CYTOCHROME REMARK 1 TITL 4 BC1 COMPLEX IN MAMMALS AND RETAINED AS A SUBUNIT REMARK 1 TITL 5 IN THE COMPLEX REMARK 1 REF J.BIOL.CHEM. V. 268 8387 1993 REMARK 1 REFN ISSN 0021-9258 REMARK 1 REFERENCE 3 REMARK 1 AUTH S.USUI,L.YU,C.A.YU REMARK 1 TITL CLONING AND SEQUENCING OF A CDNA ENCODING THE REMARK 1 TITL 2 RIESKE IRON-SULFUR PROTEIN OF BOVINE HEART REMARK 1 TITL 3 MITOCHONDRIAL UBIQUINOL-CYTOCHROME C REDUCTASE REMARK 1 REF BIOCHEM.BIOPHYS.RES.COMMUN. V. 167 575 1990 REMARK 1 REFN ISSN 0006-291X REMARK 1 REFERENCE 4 REMARK 1 AUTH H.SCHAGGER,U.BORCHART,W.MACHLEIDT,T.A.LINK, REMARK 1 AUTH 2 G.VON JAGOW REMARK 1 TITL ISOLATION AND AMINO ACID SEQUENCE OF THE 'RIESKE' REMARK 1 TITL 2 IRON SULFUR PROTEIN OF BEEF HEART REMARK 1 TITL 3 UBIQUINOL:CYTOCHROME C REDUCTASE REMARK 1 REF FEBS LETT. V. 219 161 1987 REMARK 1 REFN ISSN 0014-5793 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.1 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 10.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 75.6 REMARK 3 NUMBER OF REFLECTIONS : 15165 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.211 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1169 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 4 REMARK 3 SOLVENT ATOMS : 167 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 9.21 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : 0.16 REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.009 REMARK 3 BOND ANGLES (DEGREES) : 1.50 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 27.00 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.40 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 2.324 ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.949 ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : 2.553 ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.188 ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1RIE COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-MAY-95 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-6A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : FUJI REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18058 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 89.4 REMARK 200 DATA REDUNDANCY : 3.520 REMARK 200 R MERGE (I) : 0.05100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 28.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.53 REMARK 200 COMPLETENESS FOR SHELL (%) : 68.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.27000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: MLPHARE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 6.0 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 26.50000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 VAL A 68 REMARK 465 LEU A 69 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 141 -74.59 -73.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 360 DISTANCE = 7.31 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: IRO REMARK 800 EVIDENCE_CODE: UNKNOWN REMARK 800 SITE_DESCRIPTION: FE2/S2 SITE. REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FES A 200 DBREF 1RIE A 68 196 UNP P13272 UCRI_BOVIN 146 274 SEQRES 1 A 129 VAL LEU ALA MET SER LYS ILE GLU ILE LYS LEU SER ASP SEQRES 2 A 129 ILE PRO GLU GLY LYS ASN MET ALA PHE LYS TRP ARG GLY SEQRES 3 A 129 LYS PRO LEU PHE VAL ARG HIS ARG THR LYS LYS GLU ILE SEQRES 4 A 129 ASP GLN GLU ALA ALA VAL GLU VAL SER GLN LEU ARG ASP SEQRES 5 A 129 PRO GLN HIS ASP LEU GLU ARG VAL LYS LYS PRO GLU TRP SEQRES 6 A 129 VAL ILE LEU ILE GLY VAL CYS THR HIS LEU GLY CYS VAL SEQRES 7 A 129 PRO ILE ALA ASN ALA GLY ASP PHE GLY GLY TYR TYR CYS SEQRES 8 A 129 PRO CYS HIS GLY SER HIS TYR ASP ALA SER GLY ARG ILE SEQRES 9 A 129 ARG LYS GLY PRO ALA PRO LEU ASN LEU GLU VAL PRO SER SEQRES 10 A 129 TYR GLU PHE THR SER ASP ASP MET VAL ILE VAL GLY HET FES A 200 4 HETNAM FES FE2/S2 (INORGANIC) CLUSTER FORMUL 2 FES FE2 S2 FORMUL 3 HOH *167(H2 O) HELIX 1 A1 THR A 102 ALA A 111 1 10 SHEET 1 S1 3 ILE A 74 LEU A 78 0 SHEET 2 S1 3 ASP A 191 GLY A 196 -1 O ASP A 191 N LEU A 78 SHEET 3 S1 3 SER A 184 THR A 188 -1 N SER A 184 O GLY A 196 SHEET 1 S2 3 LYS A 85 TRP A 91 0 SHEET 2 S2 3 LYS A 94 ARG A 101 -1 O LYS A 94 N TRP A 91 SHEET 3 S2 3 GLU A 131 VAL A 138 -1 O GLU A 131 N ARG A 101 SHEET 1 S3 4 ILE A 147 ASN A 149 0 SHEET 2 S3 4 GLY A 155 CYS A 158 -1 O GLY A 155 N ILE A 147 SHEET 3 S3 4 SER A 163 ASP A 166 -1 O SER A 163 N CYS A 158 SHEET 4 S3 4 GLY A 169 LYS A 173 -1 N GLY A 169 O ASP A 166 SSBOND 1 CYS A 144 CYS A 160 1555 1555 2.03 LINK FE1 FES A 200 SG CYS A 158 1555 1555 2.22 LINK FE1 FES A 200 SG CYS A 139 1555 1555 2.29 LINK FE2 FES A 200 ND1 HIS A 141 1555 1555 2.16 LINK FE2 FES A 200 ND1 HIS A 161 1555 1555 2.13 SITE 1 IRO 4 CYS A 139 CYS A 158 HIS A 141 HIS A 161 SITE 1 AC1 7 CYS A 139 HIS A 141 LEU A 142 CYS A 144 SITE 2 AC1 7 CYS A 158 HIS A 161 SER A 163 CRYST1 32.100 53.000 38.000 90.00 100.30 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.031153 0.000000 0.005661 0.00000 SCALE2 0.000000 0.018868 0.000000 0.00000 SCALE3 0.000000 0.000000 0.026747 0.00000