data_1RKI # _entry.id 1RKI # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 1RKI RCSB RCSB020837 WWPDB D_1000020837 # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1RKI _pdbx_database_status.recvd_initial_deposition_date 2003-11-21 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Beeby, M.' 1 'Ryttersgaard, C.' 2 'Boutz, D.R.' 3 'Perry, L.J.' 4 'Yeates, T.O.' 5 # _citation.id primary _citation.title 'The Genomics of Disulfide Bonding and Protein Stabilization in Thermophiles.' _citation.journal_abbrev 'Plos Biol.' _citation.journal_volume 3 _citation.page_first e309 _citation.page_last e309 _citation.year 2005 _citation.journal_id_ASTM ? _citation.country US _citation.journal_id_ISSN 1544-9173 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 16111437 _citation.pdbx_database_id_DOI 10.1371/journal.pbio.0030309 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Beeby, M.' 1 primary 'Ryttersgaard, C.' 2 primary 'Boutz, D.R.' 3 primary 'Perry, L.J.' 4 primary 'Yeates, T.O.' 5 # _cell.entry_id 1RKI _cell.length_a 105.483 _cell.length_b 43.717 _cell.length_c 52.717 _cell.angle_alpha 90.00 _cell.angle_beta 113.24 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1RKI _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'hypothetical protein' 11896.090 2 ? ? pag5_736 ? 2 non-polymer syn 'SULFATE ION' 96.063 2 ? ? ? ? 3 non-polymer syn 'ACETATE ION' 59.044 1 ? ? ? ? 4 non-polymer syn 'CHLORIDE ION' 35.453 1 ? ? ? ? 5 non-polymer syn 'HEXAETHYLENE GLYCOL' 282.331 1 ? ? ? ? 6 non-polymer syn 'TETRAETHYLENE GLYCOL' 194.226 1 ? ? ? ? 7 water nat water 18.015 89 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MKKHIIIKTIPKKEEIISRDLCDCIYYYDNSVICKPIGPSKVYVSTSLENLEKCLQLHYFKKLVKNIEIFDEVHNSKPNC DKCLIVEIGGVYFVRRVNGVPR ; _entity_poly.pdbx_seq_one_letter_code_can ;MKKHIIIKTIPKKEEIISRDLCDCIYYYDNSVICKPIGPSKVYVSTSLENLEKCLQLHYFKKLVKNIEIFDEVHNSKPNC DKCLIVEIGGVYFVRRVNGVPR ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 LYS n 1 3 LYS n 1 4 HIS n 1 5 ILE n 1 6 ILE n 1 7 ILE n 1 8 LYS n 1 9 THR n 1 10 ILE n 1 11 PRO n 1 12 LYS n 1 13 LYS n 1 14 GLU n 1 15 GLU n 1 16 ILE n 1 17 ILE n 1 18 SER n 1 19 ARG n 1 20 ASP n 1 21 LEU n 1 22 CYS n 1 23 ASP n 1 24 CYS n 1 25 ILE n 1 26 TYR n 1 27 TYR n 1 28 TYR n 1 29 ASP n 1 30 ASN n 1 31 SER n 1 32 VAL n 1 33 ILE n 1 34 CYS n 1 35 LYS n 1 36 PRO n 1 37 ILE n 1 38 GLY n 1 39 PRO n 1 40 SER n 1 41 LYS n 1 42 VAL n 1 43 TYR n 1 44 VAL n 1 45 SER n 1 46 THR n 1 47 SER n 1 48 LEU n 1 49 GLU n 1 50 ASN n 1 51 LEU n 1 52 GLU n 1 53 LYS n 1 54 CYS n 1 55 LEU n 1 56 GLN n 1 57 LEU n 1 58 HIS n 1 59 TYR n 1 60 PHE n 1 61 LYS n 1 62 LYS n 1 63 LEU n 1 64 VAL n 1 65 LYS n 1 66 ASN n 1 67 ILE n 1 68 GLU n 1 69 ILE n 1 70 PHE n 1 71 ASP n 1 72 GLU n 1 73 VAL n 1 74 HIS n 1 75 ASN n 1 76 SER n 1 77 LYS n 1 78 PRO n 1 79 ASN n 1 80 CYS n 1 81 ASP n 1 82 LYS n 1 83 CYS n 1 84 LEU n 1 85 ILE n 1 86 VAL n 1 87 GLU n 1 88 ILE n 1 89 GLY n 1 90 GLY n 1 91 VAL n 1 92 TYR n 1 93 PHE n 1 94 VAL n 1 95 ARG n 1 96 ARG n 1 97 VAL n 1 98 ASN n 1 99 GLY n 1 100 VAL n 1 101 PRO n 1 102 ARG n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Pyrobaculum _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Pyrobaculum aerophilum' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 13773 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21-Gold(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name 'pET-22b(+)' _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q8ZYK2_PYRAE _struct_ref.pdbx_db_accession Q8ZYK2 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MKKHIIIKTIPKKEEIISRDLCDCIYYYDNSVICKPIGPSKVYVSTSLENLEKCLQLHYFKKLVKNIEIFDEVHNSKPNC DKCLIVEIGGVYFVRRVN ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1RKI A 1 ? 98 ? Q8ZYK2 1 ? 98 ? 1 98 2 1 1RKI B 1 ? 98 ? Q8ZYK2 1 ? 98 ? 1 98 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 1RKI GLY A 99 ? UNP Q8ZYK2 ? ? 'CLONING ARTIFACT' 99 1 1 1RKI VAL A 100 ? UNP Q8ZYK2 ? ? 'CLONING ARTIFACT' 100 2 1 1RKI PRO A 101 ? UNP Q8ZYK2 ? ? 'CLONING ARTIFACT' 101 3 1 1RKI ARG A 102 ? UNP Q8ZYK2 ? ? 'CLONING ARTIFACT' 102 4 2 1RKI GLY B 99 ? UNP Q8ZYK2 ? ? 'CLONING ARTIFACT' 99 5 2 1RKI VAL B 100 ? UNP Q8ZYK2 ? ? 'CLONING ARTIFACT' 100 6 2 1RKI PRO B 101 ? UNP Q8ZYK2 ? ? 'CLONING ARTIFACT' 101 7 2 1RKI ARG B 102 ? UNP Q8ZYK2 ? ? 'CLONING ARTIFACT' 102 8 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ACT non-polymer . 'ACETATE ION' ? 'C2 H3 O2 -1' 59.044 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CL non-polymer . 'CHLORIDE ION' ? 'Cl -1' 35.453 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 P6G non-polymer . 'HEXAETHYLENE GLYCOL' 'POLYETHYLENE GLYCOL PEG400' 'C12 H26 O7' 282.331 PG4 non-polymer . 'TETRAETHYLENE GLYCOL' ? 'C8 H18 O5' 194.226 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1RKI _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 2 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 47.60 _exptl_crystal.description ? _exptl_crystal.density_Matthews 2.35 _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 4.6 _exptl_crystal_grow.pdbx_details 'PEG 8000, lithium sulphate, acetate, pH 4.6, VAPOR DIFFUSION, HANGING DROP, temperature 293K' _exptl_crystal_grow.pdbx_pH_range . # loop_ _diffrn.id _diffrn.ambient_temp _diffrn.ambient_temp_details _diffrn.crystal_id 1 100 ? 1 2 100 ? 1 1,2 ? ? 1 # loop_ _diffrn_detector.diffrn_id _diffrn_detector.detector _diffrn_detector.type _diffrn_detector.pdbx_collection_date _diffrn_detector.details 1 'IMAGE PLATE' 'RIGAKU RAXIS IV' 2003-06-06 ? 2 CCD 'ADSC QUANTUM 315' 2003-07-12 ? # loop_ _diffrn_radiation.diffrn_id _diffrn_radiation.wavelength_id _diffrn_radiation.pdbx_monochromatic_or_laue_m_l _diffrn_radiation.monochromator _diffrn_radiation.pdbx_diffrn_protocol _diffrn_radiation.pdbx_scattering_type 1 1 M 'Osmic Confocal Max-Flux' 'SINGLE WAVELENGTH' x-ray 2 1 M 'Double crystal Si(1 1 1)' 'SINGLE WAVELENGTH' x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 1.5418 1.0 2 1.1271 1.0 # loop_ _diffrn_source.diffrn_id _diffrn_source.source _diffrn_source.type _diffrn_source.pdbx_synchrotron_site _diffrn_source.pdbx_synchrotron_beamline _diffrn_source.pdbx_wavelength _diffrn_source.pdbx_wavelength_list 1 'ROTATING ANODE' 'RIGAKU RU200' ? ? ? 1.5418 2 SYNCHROTRON 'ALS BEAMLINE 8.2.2' ALS 8.2.2 ? 1.1271 # _reflns.entry_id 1RKI _reflns.observed_criterion_sigma_F 0.0 _reflns.observed_criterion_sigma_I 0.0 _reflns.d_resolution_high 1.6 _reflns.d_resolution_low 90.0 _reflns.number_all 28068 _reflns.number_obs 28068 _reflns.percent_possible_obs 96.0 _reflns.pdbx_Rmerge_I_obs 0.125 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1,2 # _reflns_shell.d_res_high 1.60 _reflns_shell.d_res_low 1.66 _reflns_shell.percent_possible_all 75.0 _reflns_shell.Rmerge_I_obs 0.495 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 2174 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1,2 # _refine.entry_id 1RKI _refine.ls_number_reflns_obs 26648 _refine.ls_number_reflns_all 26648 _refine.pdbx_ls_sigma_I 0.0 _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 28.63 _refine.ls_d_res_high 1.60 _refine.ls_percent_reflns_obs 95.69 _refine.ls_R_factor_obs 0.18665 _refine.ls_R_factor_all 0.18665 _refine.ls_R_factor_R_work 0.18409 _refine.ls_R_factor_R_free 0.23507 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.0 _refine.ls_number_reflns_R_free 1409 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.969 _refine.correlation_coeff_Fo_to_Fc_free 0.953 _refine.B_iso_mean 30.700 _refine.aniso_B[1][1] -1.53 _refine.aniso_B[2][2] 2.69 _refine.aniso_B[3][3] -2.31 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] -1.46 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MIR _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.091 _refine.pdbx_overall_ESU_R_Free 0.100 _refine.overall_SU_ML 0.077 _refine.overall_SU_B 2.360 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1614 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 47 _refine_hist.number_atoms_solvent 89 _refine_hist.number_atoms_total 1750 _refine_hist.d_res_high 1.60 _refine_hist.d_res_low 28.63 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.024 0.022 ? 1706 'X-RAY DIFFRACTION' ? r_bond_other_d 0.002 0.020 ? 1580 'X-RAY DIFFRACTION' ? r_angle_refined_deg 2.270 2.007 ? 2289 'X-RAY DIFFRACTION' ? r_angle_other_deg 2.508 3.000 ? 3736 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 6.855 5.000 ? 196 'X-RAY DIFFRACTION' ? r_chiral_restr 0.111 0.200 ? 254 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.010 0.020 ? 1741 'X-RAY DIFFRACTION' ? r_gen_planes_other 0.010 0.020 ? 301 'X-RAY DIFFRACTION' ? r_nbd_refined 0.207 0.200 ? 269 'X-RAY DIFFRACTION' ? r_nbd_other 0.240 0.200 ? 1642 'X-RAY DIFFRACTION' ? r_nbtor_other 0.094 0.200 ? 982 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.145 0.200 ? 53 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.256 0.200 ? 13 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other 0.284 0.200 ? 84 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.199 0.200 ? 5 'X-RAY DIFFRACTION' ? r_mcbond_it 1.368 1.500 ? 993 'X-RAY DIFFRACTION' ? r_mcangle_it 2.416 2.000 ? 1641 'X-RAY DIFFRACTION' ? r_scbond_it 3.494 3.000 ? 709 'X-RAY DIFFRACTION' ? r_scangle_it 5.596 4.500 ? 640 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.601 _refine_ls_shell.d_res_low 1.642 _refine_ls_shell.number_reflns_R_work 1420 _refine_ls_shell.R_factor_R_work 0.378 _refine_ls_shell.percent_reflns_obs ? _refine_ls_shell.R_factor_R_free 0.419 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 65 _refine_ls_shell.number_reflns_obs 1485 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.R_factor_all ? # _struct.entry_id 1RKI _struct.title 'Structure of pag5_736 from P. aerophilum with three disulphide bonds' _struct.pdbx_descriptor 'hypothetical protein' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1RKI _struct_keywords.pdbx_keywords 'STRUCTURAL GENOMICS, UNKNOWN FUNCTION' _struct_keywords.text 'STRUCTURAL GENOMICS, (beta-alpha-beta)x2, beta-loop-beta-beta, CxxC motif, UNKNOWN FUNCTION' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 3 ? F N N 4 ? G N N 5 ? H N N 6 ? I N N 7 ? J N N 7 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 LYS A 13 ? TYR A 26 ? LYS A 13 TYR A 26 1 ? 14 HELX_P HELX_P2 2 SER A 47 ? GLN A 56 ? SER A 47 GLN A 56 1 ? 10 HELX_P HELX_P3 3 LEU A 57 ? LYS A 62 ? LEU A 57 LYS A 62 1 ? 6 HELX_P HELX_P4 4 ILE B 10 ? LYS B 12 ? ILE B 10 LYS B 12 5 ? 3 HELX_P HELX_P5 5 LYS B 13 ? ARG B 19 ? LYS B 13 ARG B 19 1 ? 7 HELX_P HELX_P6 6 ARG B 19 ? ASP B 29 ? ARG B 19 ASP B 29 1 ? 11 HELX_P HELX_P7 7 SER B 47 ? GLN B 56 ? SER B 47 GLN B 56 1 ? 10 HELX_P HELX_P8 8 LEU B 57 ? LYS B 62 ? LEU B 57 LYS B 62 1 ? 6 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf1 disulf ? ? A CYS 22 SG ? ? ? 1_555 A CYS 34 SG ? ? A CYS 22 A CYS 34 1_555 ? ? ? ? ? ? ? 2.118 ? disulf2 disulf ? ? A CYS 24 SG ? ? ? 1_555 A CYS 54 SG ? ? A CYS 24 A CYS 54 1_555 ? ? ? ? ? ? ? 2.164 ? disulf3 disulf ? ? A CYS 80 SG ? ? ? 1_555 A CYS 83 SG ? ? A CYS 80 A CYS 83 1_555 ? ? ? ? ? ? ? 2.097 ? disulf4 disulf ? ? B CYS 22 SG A ? ? 1_555 B CYS 34 SG A ? B CYS 22 B CYS 34 1_555 ? ? ? ? ? ? ? 2.028 ? disulf5 disulf ? ? B CYS 22 SG B ? ? 1_555 B CYS 34 SG B ? B CYS 22 B CYS 34 1_555 ? ? ? ? ? ? ? 2.024 ? disulf6 disulf ? ? B CYS 24 SG ? ? ? 1_555 B CYS 54 SG ? ? B CYS 24 B CYS 54 1_555 ? ? ? ? ? ? ? 2.124 ? disulf7 disulf ? ? B CYS 80 SG ? ? ? 1_555 B CYS 83 SG ? ? B CYS 80 B CYS 83 1_555 ? ? ? ? ? ? ? 2.074 ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 3 ? C ? 4 ? D ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel C 3 4 ? anti-parallel D 1 2 ? anti-parallel D 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ILE A 33 ? GLY A 38 ? ILE A 33 GLY A 38 A 2 LYS A 41 ? THR A 46 ? LYS A 41 THR A 46 A 3 LYS A 3 ? THR A 9 ? LYS A 3 THR A 9 A 4 VAL A 64 ? PHE A 70 ? VAL A 64 PHE A 70 B 1 GLU A 72 ? HIS A 74 ? GLU A 72 HIS A 74 B 2 VAL A 91 ? ARG A 96 ? VAL A 91 ARG A 96 B 3 CYS A 83 ? ILE A 88 ? CYS A 83 ILE A 88 C 1 ILE B 33 ? GLY B 38 ? ILE B 33 GLY B 38 C 2 LYS B 41 ? THR B 46 ? LYS B 41 THR B 46 C 3 LYS B 3 ? LYS B 8 ? LYS B 3 LYS B 8 C 4 ASN B 66 ? PHE B 70 ? ASN B 66 PHE B 70 D 1 GLU B 72 ? HIS B 74 ? GLU B 72 HIS B 74 D 2 VAL B 91 ? ARG B 95 ? VAL B 91 ARG B 95 D 3 LEU B 84 ? ILE B 88 ? LEU B 84 ILE B 88 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N LYS A 35 ? N LYS A 35 O TYR A 43 ? O TYR A 43 A 2 3 O VAL A 42 ? O VAL A 42 N ILE A 7 ? N ILE A 7 A 3 4 N LYS A 8 ? N LYS A 8 O ASN A 66 ? O ASN A 66 B 1 2 N HIS A 74 ? N HIS A 74 O TYR A 92 ? O TYR A 92 B 2 3 O PHE A 93 ? O PHE A 93 N VAL A 86 ? N VAL A 86 C 1 2 N LYS B 35 ? N LYS B 35 O TYR B 43 ? O TYR B 43 C 2 3 O VAL B 44 ? O VAL B 44 N ILE B 5 ? N ILE B 5 C 3 4 N LYS B 8 ? N LYS B 8 O ASN B 66 ? O ASN B 66 D 1 2 N HIS B 74 ? N HIS B 74 O TYR B 92 ? O TYR B 92 D 2 3 O PHE B 93 ? O PHE B 93 N VAL B 86 ? N VAL B 86 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 6 'BINDING SITE FOR RESIDUE ACT B 201' AC2 Software ? ? ? ? 7 'BINDING SITE FOR RESIDUE SO4 A 202' AC3 Software ? ? ? ? 3 'BINDING SITE FOR RESIDUE SO4 A 203' AC4 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE CL B 204' AC5 Software ? ? ? ? 8 'BINDING SITE FOR RESIDUE P6G B 205' AC6 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE PG4 B 206' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 ASP B 23 ? ASP B 23 . ? 1_555 ? 2 AC1 6 TYR B 27 ? TYR B 27 . ? 1_555 ? 3 AC1 6 GLU B 72 ? GLU B 72 . ? 4_555 ? 4 AC1 6 VAL B 73 ? VAL B 73 . ? 4_555 ? 5 AC1 6 HOH J . ? HOH B 209 . ? 4_555 ? 6 AC1 6 HOH J . ? HOH B 231 . ? 1_555 ? 7 AC2 7 HIS A 58 ? HIS A 58 . ? 1_555 ? 8 AC2 7 LYS A 62 ? LYS A 62 . ? 1_555 ? 9 AC2 7 HOH I . ? HOH A 207 . ? 1_555 ? 10 AC2 7 HOH I . ? HOH A 225 . ? 1_555 ? 11 AC2 7 SER B 76 ? SER B 76 . ? 2_555 ? 12 AC2 7 LYS B 77 ? LYS B 77 . ? 2_555 ? 13 AC2 7 HOH J . ? HOH B 243 . ? 2_555 ? 14 AC3 3 HIS A 74 ? HIS A 74 . ? 1_555 ? 15 AC3 3 ASN A 75 ? ASN A 75 . ? 1_555 ? 16 AC3 3 SER A 76 ? SER A 76 . ? 1_555 ? 17 AC4 4 HIS A 58 ? HIS A 58 . ? 2_555 ? 18 AC4 4 ASN B 75 ? ASN B 75 . ? 1_555 ? 19 AC4 4 HOH J . ? HOH B 214 . ? 4_545 ? 20 AC4 4 HOH J . ? HOH B 248 . ? 4_545 ? 21 AC5 8 CYS A 24 ? CYS A 24 . ? 2_555 ? 22 AC5 8 TYR A 27 ? TYR A 27 . ? 2_555 ? 23 AC5 8 TYR A 28 ? TYR A 28 . ? 2_555 ? 24 AC5 8 TYR B 27 ? TYR B 27 . ? 4_545 ? 25 AC5 8 LYS B 35 ? LYS B 35 . ? 1_555 ? 26 AC5 8 TYR B 43 ? TYR B 43 . ? 1_555 ? 27 AC5 8 VAL B 91 ? VAL B 91 . ? 1_555 ? 28 AC5 8 PG4 H . ? PG4 B 206 . ? 1_555 ? 29 AC6 4 ASP B 20 ? ASP B 20 . ? 4_545 ? 30 AC6 4 ASP B 23 ? ASP B 23 . ? 4_545 ? 31 AC6 4 TYR B 27 ? TYR B 27 . ? 4_545 ? 32 AC6 4 P6G G . ? P6G B 205 . ? 1_555 ? # _database_PDB_matrix.entry_id 1RKI _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1RKI _atom_sites.fract_transf_matrix[1][1] 0.009480 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.004071 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.022874 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.020644 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CL N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 1 MET MET A . n A 1 2 LYS 2 2 2 LYS LYS A . n A 1 3 LYS 3 3 3 LYS LYS A . n A 1 4 HIS 4 4 4 HIS HIS A . n A 1 5 ILE 5 5 5 ILE ILE A . n A 1 6 ILE 6 6 6 ILE ILE A . n A 1 7 ILE 7 7 7 ILE ILE A . n A 1 8 LYS 8 8 8 LYS LYS A . n A 1 9 THR 9 9 9 THR THR A . n A 1 10 ILE 10 10 10 ILE ILE A . n A 1 11 PRO 11 11 11 PRO PRO A . n A 1 12 LYS 12 12 12 LYS LYS A . n A 1 13 LYS 13 13 13 LYS LYS A . n A 1 14 GLU 14 14 14 GLU GLU A . n A 1 15 GLU 15 15 15 GLU GLU A . n A 1 16 ILE 16 16 16 ILE ILE A . n A 1 17 ILE 17 17 17 ILE ILE A . n A 1 18 SER 18 18 18 SER SER A . n A 1 19 ARG 19 19 19 ARG ARG A . n A 1 20 ASP 20 20 20 ASP ASP A . n A 1 21 LEU 21 21 21 LEU LEU A . n A 1 22 CYS 22 22 22 CYS CYS A . n A 1 23 ASP 23 23 23 ASP ASP A . n A 1 24 CYS 24 24 24 CYS CYS A . n A 1 25 ILE 25 25 25 ILE ILE A . n A 1 26 TYR 26 26 26 TYR TYR A . n A 1 27 TYR 27 27 27 TYR TYR A . n A 1 28 TYR 28 28 28 TYR TYR A . n A 1 29 ASP 29 29 29 ASP ASP A . n A 1 30 ASN 30 30 30 ASN ASN A . n A 1 31 SER 31 31 31 SER SER A . n A 1 32 VAL 32 32 32 VAL VAL A . n A 1 33 ILE 33 33 33 ILE ILE A . n A 1 34 CYS 34 34 34 CYS CYS A . n A 1 35 LYS 35 35 35 LYS LYS A . n A 1 36 PRO 36 36 36 PRO PRO A . n A 1 37 ILE 37 37 37 ILE ILE A . n A 1 38 GLY 38 38 38 GLY GLY A . n A 1 39 PRO 39 39 39 PRO PRO A . n A 1 40 SER 40 40 40 SER SER A . n A 1 41 LYS 41 41 41 LYS LYS A . n A 1 42 VAL 42 42 42 VAL VAL A . n A 1 43 TYR 43 43 43 TYR TYR A . n A 1 44 VAL 44 44 44 VAL VAL A . n A 1 45 SER 45 45 45 SER SER A . n A 1 46 THR 46 46 46 THR THR A . n A 1 47 SER 47 47 47 SER SER A . n A 1 48 LEU 48 48 48 LEU LEU A . n A 1 49 GLU 49 49 49 GLU GLU A . n A 1 50 ASN 50 50 50 ASN ASN A . n A 1 51 LEU 51 51 51 LEU LEU A . n A 1 52 GLU 52 52 52 GLU GLU A . n A 1 53 LYS 53 53 53 LYS LYS A . n A 1 54 CYS 54 54 54 CYS CYS A . n A 1 55 LEU 55 55 55 LEU LEU A . n A 1 56 GLN 56 56 56 GLN GLN A . n A 1 57 LEU 57 57 57 LEU LEU A . n A 1 58 HIS 58 58 58 HIS HIS A . n A 1 59 TYR 59 59 59 TYR TYR A . n A 1 60 PHE 60 60 60 PHE PHE A . n A 1 61 LYS 61 61 61 LYS LYS A . n A 1 62 LYS 62 62 62 LYS LYS A . n A 1 63 LEU 63 63 63 LEU LEU A . n A 1 64 VAL 64 64 64 VAL VAL A . n A 1 65 LYS 65 65 65 LYS LYS A . n A 1 66 ASN 66 66 66 ASN ASN A . n A 1 67 ILE 67 67 67 ILE ILE A . n A 1 68 GLU 68 68 68 GLU GLU A . n A 1 69 ILE 69 69 69 ILE ILE A . n A 1 70 PHE 70 70 70 PHE PHE A . n A 1 71 ASP 71 71 71 ASP ASP A . n A 1 72 GLU 72 72 72 GLU GLU A . n A 1 73 VAL 73 73 73 VAL VAL A . n A 1 74 HIS 74 74 74 HIS HIS A . n A 1 75 ASN 75 75 75 ASN ASN A . n A 1 76 SER 76 76 76 SER SER A . n A 1 77 LYS 77 77 77 LYS LYS A . n A 1 78 PRO 78 78 78 PRO PRO A . n A 1 79 ASN 79 79 79 ASN ASN A . n A 1 80 CYS 80 80 80 CYS CYS A . n A 1 81 ASP 81 81 81 ASP ASP A . n A 1 82 LYS 82 82 82 LYS LYS A . n A 1 83 CYS 83 83 83 CYS CYS A . n A 1 84 LEU 84 84 84 LEU LEU A . n A 1 85 ILE 85 85 85 ILE ILE A . n A 1 86 VAL 86 86 86 VAL VAL A . n A 1 87 GLU 87 87 87 GLU GLU A . n A 1 88 ILE 88 88 88 ILE ILE A . n A 1 89 GLY 89 89 89 GLY GLY A . n A 1 90 GLY 90 90 90 GLY GLY A . n A 1 91 VAL 91 91 91 VAL VAL A . n A 1 92 TYR 92 92 92 TYR TYR A . n A 1 93 PHE 93 93 93 PHE PHE A . n A 1 94 VAL 94 94 94 VAL VAL A . n A 1 95 ARG 95 95 95 ARG ARG A . n A 1 96 ARG 96 96 96 ARG ARG A . n A 1 97 VAL 97 97 97 VAL VAL A . n A 1 98 ASN 98 98 98 ASN ASN A . n A 1 99 GLY 99 99 99 GLY GLY A . n A 1 100 VAL 100 100 100 VAL VAL A . n A 1 101 PRO 101 101 101 PRO PRO A . n A 1 102 ARG 102 102 ? ? ? A . n B 1 1 MET 1 1 1 MET MET B . n B 1 2 LYS 2 2 2 LYS LYS B . n B 1 3 LYS 3 3 3 LYS LYS B . n B 1 4 HIS 4 4 4 HIS HIS B . n B 1 5 ILE 5 5 5 ILE ILE B . n B 1 6 ILE 6 6 6 ILE ILE B . n B 1 7 ILE 7 7 7 ILE ILE B . n B 1 8 LYS 8 8 8 LYS LYS B . n B 1 9 THR 9 9 9 THR THR B . n B 1 10 ILE 10 10 10 ILE ILE B . n B 1 11 PRO 11 11 11 PRO PRO B . n B 1 12 LYS 12 12 12 LYS LYS B . n B 1 13 LYS 13 13 13 LYS LYS B . n B 1 14 GLU 14 14 14 GLU GLU B . n B 1 15 GLU 15 15 15 GLU GLU B . n B 1 16 ILE 16 16 16 ILE ILE B . n B 1 17 ILE 17 17 17 ILE ILE B . n B 1 18 SER 18 18 18 SER SER B . n B 1 19 ARG 19 19 19 ARG ARG B . n B 1 20 ASP 20 20 20 ASP ASP B . n B 1 21 LEU 21 21 21 LEU LEU B . n B 1 22 CYS 22 22 22 CYS CYS B . n B 1 23 ASP 23 23 23 ASP ASP B . n B 1 24 CYS 24 24 24 CYS CYS B . n B 1 25 ILE 25 25 25 ILE ILE B . n B 1 26 TYR 26 26 26 TYR TYR B . n B 1 27 TYR 27 27 27 TYR TYR B . n B 1 28 TYR 28 28 28 TYR TYR B . n B 1 29 ASP 29 29 29 ASP ASP B . n B 1 30 ASN 30 30 30 ASN ASN B . n B 1 31 SER 31 31 31 SER SER B . n B 1 32 VAL 32 32 32 VAL VAL B . n B 1 33 ILE 33 33 33 ILE ILE B . n B 1 34 CYS 34 34 34 CYS CYS B . n B 1 35 LYS 35 35 35 LYS LYS B . n B 1 36 PRO 36 36 36 PRO PRO B . n B 1 37 ILE 37 37 37 ILE ILE B . n B 1 38 GLY 38 38 38 GLY GLY B . n B 1 39 PRO 39 39 39 PRO PRO B . n B 1 40 SER 40 40 40 SER SER B . n B 1 41 LYS 41 41 41 LYS LYS B . n B 1 42 VAL 42 42 42 VAL VAL B . n B 1 43 TYR 43 43 43 TYR TYR B . n B 1 44 VAL 44 44 44 VAL VAL B . n B 1 45 SER 45 45 45 SER SER B . n B 1 46 THR 46 46 46 THR THR B . n B 1 47 SER 47 47 47 SER SER B . n B 1 48 LEU 48 48 48 LEU LEU B . n B 1 49 GLU 49 49 49 GLU GLU B . n B 1 50 ASN 50 50 50 ASN ASN B . n B 1 51 LEU 51 51 51 LEU LEU B . n B 1 52 GLU 52 52 52 GLU GLU B . n B 1 53 LYS 53 53 53 LYS LYS B . n B 1 54 CYS 54 54 54 CYS CYS B . n B 1 55 LEU 55 55 55 LEU LEU B . n B 1 56 GLN 56 56 56 GLN GLN B . n B 1 57 LEU 57 57 57 LEU LEU B . n B 1 58 HIS 58 58 58 HIS HIS B . n B 1 59 TYR 59 59 59 TYR TYR B . n B 1 60 PHE 60 60 60 PHE PHE B . n B 1 61 LYS 61 61 61 LYS LYS B . n B 1 62 LYS 62 62 62 LYS LYS B . n B 1 63 LEU 63 63 63 LEU LEU B . n B 1 64 VAL 64 64 64 VAL VAL B . n B 1 65 LYS 65 65 65 LYS LYS B . n B 1 66 ASN 66 66 66 ASN ASN B . n B 1 67 ILE 67 67 67 ILE ILE B . n B 1 68 GLU 68 68 68 GLU GLU B . n B 1 69 ILE 69 69 69 ILE ILE B . n B 1 70 PHE 70 70 70 PHE PHE B . n B 1 71 ASP 71 71 71 ASP ASP B . n B 1 72 GLU 72 72 72 GLU GLU B . n B 1 73 VAL 73 73 73 VAL VAL B . n B 1 74 HIS 74 74 74 HIS HIS B . n B 1 75 ASN 75 75 75 ASN ASN B . n B 1 76 SER 76 76 76 SER SER B . n B 1 77 LYS 77 77 77 LYS LYS B . n B 1 78 PRO 78 78 78 PRO PRO B . n B 1 79 ASN 79 79 79 ASN ASN B . n B 1 80 CYS 80 80 80 CYS CYS B . n B 1 81 ASP 81 81 81 ASP ASP B . n B 1 82 LYS 82 82 82 LYS LYS B . n B 1 83 CYS 83 83 83 CYS CYS B . n B 1 84 LEU 84 84 84 LEU LEU B . n B 1 85 ILE 85 85 85 ILE ILE B . n B 1 86 VAL 86 86 86 VAL VAL B . n B 1 87 GLU 87 87 87 GLU GLU B . n B 1 88 ILE 88 88 88 ILE ILE B . n B 1 89 GLY 89 89 89 GLY GLY B . n B 1 90 GLY 90 90 90 GLY GLY B . n B 1 91 VAL 91 91 91 VAL VAL B . n B 1 92 TYR 92 92 92 TYR TYR B . n B 1 93 PHE 93 93 93 PHE PHE B . n B 1 94 VAL 94 94 94 VAL VAL B . n B 1 95 ARG 95 95 95 ARG ARG B . n B 1 96 ARG 96 96 96 ARG ARG B . n B 1 97 VAL 97 97 97 VAL VAL B . n B 1 98 ASN 98 98 ? ? ? B . n B 1 99 GLY 99 99 ? ? ? B . n B 1 100 VAL 100 100 ? ? ? B . n B 1 101 PRO 101 101 ? ? ? B . n B 1 102 ARG 102 102 ? ? ? B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SO4 1 202 2 SO4 SO4 A . D 2 SO4 1 203 3 SO4 SO4 A . E 3 ACT 1 201 1 ACT ACT B . F 4 CL 1 204 4 CL CL B . G 5 P6G 1 205 5 P6G 6PE B . H 6 PG4 1 206 6 PG4 4PE B . I 7 HOH 1 204 3 HOH HOH A . I 7 HOH 2 205 6 HOH HOH A . I 7 HOH 3 206 9 HOH HOH A . I 7 HOH 4 207 10 HOH HOH A . I 7 HOH 5 208 11 HOH HOH A . I 7 HOH 6 209 13 HOH HOH A . I 7 HOH 7 210 14 HOH HOH A . I 7 HOH 8 211 17 HOH HOH A . I 7 HOH 9 212 18 HOH HOH A . I 7 HOH 10 213 21 HOH HOH A . I 7 HOH 11 214 23 HOH HOH A . I 7 HOH 12 215 24 HOH HOH A . I 7 HOH 13 216 27 HOH HOH A . I 7 HOH 14 217 31 HOH HOH A . I 7 HOH 15 218 33 HOH HOH A . I 7 HOH 16 219 34 HOH HOH A . I 7 HOH 17 220 37 HOH HOH A . I 7 HOH 18 221 38 HOH HOH A . I 7 HOH 19 222 39 HOH HOH A . I 7 HOH 20 223 40 HOH HOH A . I 7 HOH 21 224 42 HOH HOH A . I 7 HOH 22 225 45 HOH HOH A . I 7 HOH 23 226 46 HOH HOH A . I 7 HOH 24 227 48 HOH HOH A . I 7 HOH 25 228 49 HOH HOH A . I 7 HOH 26 229 51 HOH HOH A . I 7 HOH 27 230 52 HOH HOH A . I 7 HOH 28 231 54 HOH HOH A . I 7 HOH 29 232 55 HOH HOH A . I 7 HOH 30 233 56 HOH HOH A . I 7 HOH 31 234 60 HOH HOH A . I 7 HOH 32 235 61 HOH HOH A . I 7 HOH 33 236 63 HOH HOH A . I 7 HOH 34 237 64 HOH HOH A . I 7 HOH 35 238 68 HOH HOH A . I 7 HOH 36 239 71 HOH HOH A . I 7 HOH 37 240 72 HOH HOH A . I 7 HOH 38 241 79 HOH HOH A . I 7 HOH 39 242 87 HOH HOH A . I 7 HOH 40 243 89 HOH HOH A . I 7 HOH 41 244 97 HOH HOH A . I 7 HOH 42 245 101 HOH HOH A . I 7 HOH 43 246 110 HOH HOH A . J 7 HOH 1 207 1 HOH HOH B . J 7 HOH 2 208 2 HOH HOH B . J 7 HOH 3 209 4 HOH HOH B . J 7 HOH 4 210 5 HOH HOH B . J 7 HOH 5 211 7 HOH HOH B . J 7 HOH 6 212 8 HOH HOH B . J 7 HOH 7 213 12 HOH HOH B . J 7 HOH 8 214 15 HOH HOH B . J 7 HOH 9 215 16 HOH HOH B . J 7 HOH 10 216 19 HOH HOH B . J 7 HOH 11 217 20 HOH HOH B . J 7 HOH 12 218 22 HOH HOH B . J 7 HOH 13 219 25 HOH HOH B . J 7 HOH 14 220 26 HOH HOH B . J 7 HOH 15 221 28 HOH HOH B . J 7 HOH 16 222 29 HOH HOH B . J 7 HOH 17 223 30 HOH HOH B . J 7 HOH 18 224 32 HOH HOH B . J 7 HOH 19 225 35 HOH HOH B . J 7 HOH 20 226 36 HOH HOH B . J 7 HOH 21 227 41 HOH HOH B . J 7 HOH 22 228 43 HOH HOH B . J 7 HOH 23 229 44 HOH HOH B . J 7 HOH 24 230 47 HOH HOH B . J 7 HOH 25 231 50 HOH HOH B . J 7 HOH 26 232 53 HOH HOH B . J 7 HOH 27 233 57 HOH HOH B . J 7 HOH 28 234 58 HOH HOH B . J 7 HOH 29 235 59 HOH HOH B . J 7 HOH 30 236 62 HOH HOH B . J 7 HOH 31 237 65 HOH HOH B . J 7 HOH 32 238 66 HOH HOH B . J 7 HOH 33 239 67 HOH HOH B . J 7 HOH 34 240 69 HOH HOH B . J 7 HOH 35 241 70 HOH HOH B . J 7 HOH 36 242 73 HOH HOH B . J 7 HOH 37 243 74 HOH HOH B . J 7 HOH 38 244 75 HOH HOH B . J 7 HOH 39 245 76 HOH HOH B . J 7 HOH 40 246 77 HOH HOH B . J 7 HOH 41 247 78 HOH HOH B . J 7 HOH 42 248 80 HOH HOH B . J 7 HOH 43 249 93 HOH HOH B . J 7 HOH 44 250 95 HOH HOH B . J 7 HOH 45 251 104 HOH HOH B . J 7 HOH 46 252 105 HOH HOH B . # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? monomeric 1 2 author_defined_assembly ? monomeric 1 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,C,D,I 2 1 B,E,F,G,H,J # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2005-01-18 2 'Structure model' 1 1 2008-04-29 3 'Structure model' 1 2 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' Advisory 3 3 'Structure model' 'Refinement description' 4 3 'Structure model' 'Version format compliance' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] 'X-RAY DIFFRACTION' 1 ? refined -3.4052 5.8163 14.3336 0.0606 0.0499 0.0423 -0.0267 0.0087 -0.0029 1.9815 0.9589 2.0589 -0.7112 0.6060 -0.0885 0.0291 -0.0552 0.0261 -0.1462 -0.0580 0.0024 0.0465 -0.0442 -0.0382 'X-RAY DIFFRACTION' 2 ? refined 8.9255 11.6429 29.1303 0.0933 0.0909 0.0229 -0.0222 -0.0153 -0.0170 2.4500 0.9066 4.9669 -0.2390 2.4730 0.9159 0.0072 -0.0820 0.0748 0.2002 0.2309 -0.0095 -0.1544 -0.2775 0.3111 'X-RAY DIFFRACTION' 3 ? refined 18.2733 18.9726 4.9588 0.0442 0.0559 0.0907 0.0130 0.0076 0.0056 0.8299 2.0489 0.5710 0.6253 0.1664 0.8925 -0.0199 -0.0441 0.0640 0.0393 -0.0009 0.1017 0.0643 -0.0733 -0.0495 'X-RAY DIFFRACTION' 4 ? refined 13.6532 -0.2326 4.8688 0.0633 0.0715 0.1005 0.0032 -0.0075 0.0251 -0.0485 1.3334 2.6069 -0.0097 -0.7576 0.2545 0.0052 0.0497 -0.0549 -0.0228 -0.1188 -0.0103 0.1010 0.2048 0.0889 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 A 1 A 70 ? . . . . ? 'X-RAY DIFFRACTION' 2 2 A 71 A 101 ? . . . . ? 'X-RAY DIFFRACTION' 3 3 B 1 B 70 ? . . . . ? 'X-RAY DIFFRACTION' 4 4 B 71 B 97 ? . . . . ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.1.24 ? 1 DENZO 'data reduction' . ? 2 SCALEPACK 'data scaling' . ? 3 SHELXD phasing . ? 4 MLPHARE phasing . ? 5 DM phasing . ? 6 CNS refinement . ? 7 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 CA B CYS 34 ? ? CB B CYS 34 ? ? 1.447 1.526 -0.079 0.013 N 2 1 CB B CYS 34 ? ? SG B CYS 34 ? B 1.713 1.812 -0.099 0.016 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 NE A ARG 19 ? ? CZ A ARG 19 ? ? NH1 A ARG 19 ? ? 124.01 120.30 3.71 0.50 N 2 1 CA B CYS 34 ? ? CB B CYS 34 ? ? SG B CYS 34 ? A 121.20 114.20 7.00 1.10 N 3 1 CA B CYS 34 ? ? CB B CYS 34 ? ? SG B CYS 34 ? B 134.28 114.20 20.08 1.10 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LYS A 12 ? ? 81.00 -7.34 2 1 THR B 9 ? ? -116.51 -157.94 3 1 ARG B 19 ? ? -97.57 -66.35 4 1 ASP B 81 ? ? -101.67 -72.93 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A ARG 102 ? A ARG 102 2 1 Y 1 B ASN 98 ? B ASN 98 3 1 Y 1 B GLY 99 ? B GLY 99 4 1 Y 1 B VAL 100 ? B VAL 100 5 1 Y 1 B PRO 101 ? B PRO 101 6 1 Y 1 B ARG 102 ? B ARG 102 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'SULFATE ION' SO4 3 'ACETATE ION' ACT 4 'CHLORIDE ION' CL 5 'HEXAETHYLENE GLYCOL' P6G 6 'TETRAETHYLENE GLYCOL' PG4 7 water HOH #