HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 23-NOV-03 1RKQ TITLE CRYSTAL STRUCTURE OF HAD-LIKE PHOSPHATASE YIDA FROM E. COLI COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYPOTHETICAL PROTEIN YIDA; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: YIDA, B3697, C4619, SF3767, S4004; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TWO DOMAIN STRUCTURE WITH BETA-ALPHA SANDWICH. STUCTURE CONTAINS A KEYWDS 2 MAGNESIUM ION., PSI, PROTEIN STRUCTURE INITIATIVE, NEW YORK SGX KEYWDS 3 RESEARCH CENTER FOR STRUCTURAL GENOMICS, NYSGXRC, STRUCTURAL KEYWDS 4 GENOMICS, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR U.A.RAMAGOPAL,S.C.ALMO,S.K.BURLEY,NEW YORK SGX RESEARCH CENTER FOR AUTHOR 2 STRUCTURAL GENOMICS (NYSGXRC) REVDAT 7 03-APR-24 1RKQ 1 REMARK REVDAT 6 14-FEB-24 1RKQ 1 REMARK REVDAT 5 03-FEB-21 1RKQ 1 AUTHOR REMARK SEQADV LINK REVDAT 4 11-OCT-17 1RKQ 1 REMARK REVDAT 3 24-FEB-09 1RKQ 1 VERSN REVDAT 2 25-JAN-05 1RKQ 1 AUTHOR KEYWDS REMARK REVDAT 1 09-MAR-04 1RKQ 0 JRNL AUTH U.A.RAMAGOPAL,S.C.ALMO JRNL TITL CRYSTAL STRUCTURE OF NYSGRC TARGET T1436: A HYPOTHETICAL JRNL TITL 2 PROTEIN YIDA. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.50 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.5 REMARK 3 NUMBER OF REFLECTIONS : 99828 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.213 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 5253 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4184 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 4 REMARK 3 SOLVENT ATOMS : 618 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 16.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.063 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.068 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.044 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.104 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : 0.020 ; NULL REMARK 3 ANGLE DISTANCE (A) : 0.034 ; NULL REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : 0.040 ; NULL REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : 0.031 ; NULL REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : 0.139 ; NULL REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : 0.168 ; NULL REMARK 3 MULTIPLE TORSION (A) : 0.269 ; NULL REMARK 3 H-BOND (X...Y) (A) : 0.105 ; NULL REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : 0.000 ; NULL REMARK 3 PLANAR (DEGREES) : 6.200 ; NULL REMARK 3 STAGGERED (DEGREES) : 13.400; NULL REMARK 3 TRANSVERSE (DEGREES) : 22.200; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1RKQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-DEC-03. REMARK 100 THE DEPOSITION ID IS D_1000020844. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-AUG-03; 06-AUG-03 REMARK 200 TEMPERATURE (KELVIN) : 120; 120 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : NSLS; NSLS REMARK 200 BEAMLINE : X9A; X9A REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97901; 1.0083 REMARK 200 MONOCHROMATOR : NULL; NULL REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH; MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 106331 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.400 REMARK 200 RESOLUTION RANGE LOW (A) : 24.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.9 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.04300 REMARK 200 R SYM (I) : 0.06400 REMARK 200 FOR THE DATA SET : 30.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.45 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.4 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.37000 REMARK 200 R SYM FOR SHELL (I) : 0.56000 REMARK 200 FOR SHELL : 2.580 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SINGLE CRYSTAL SIRAS BY REMARK 200 RIP REMARK 200 SOFTWARE USED: RESOLVE REMARK 200 STARTING MODEL: EXPERIMENTAL PHASING BY SINGLE CRYSTAL SIRAS REMARK 200 (RADIATION DAMAGE). REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.31 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 3350, MAGNESIUM CHLORIDE,, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 0 REMARK 465 GLU A 272 REMARK 465 GLY A 273 REMARK 465 GLY A 274 REMARK 465 SER A 275 REMARK 465 HIS A 276 REMARK 465 HIS A 277 REMARK 465 HIS A 278 REMARK 465 HIS A 279 REMARK 465 HIS A 280 REMARK 465 HIS A 281 REMARK 465 MET B 0 REMARK 465 GLU B 272 REMARK 465 GLY B 273 REMARK 465 GLY B 274 REMARK 465 SER B 275 REMARK 465 HIS B 276 REMARK 465 HIS B 277 REMARK 465 HIS B 278 REMARK 465 HIS B 279 REMARK 465 HIS B 280 REMARK 465 HIS B 281 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 10 CB - CG - OD1 ANGL. DEV. = 5.8 DEGREES REMARK 500 ASP A 10 CB - CG - OD2 ANGL. DEV. = -6.8 DEGREES REMARK 500 ARG A 46 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 ARG A 46 NE - CZ - NH2 ANGL. DEV. = -3.7 DEGREES REMARK 500 TYR A 48 CB - CG - CD2 ANGL. DEV. = -4.5 DEGREES REMARK 500 TYR A 48 CB - CG - CD1 ANGL. DEV. = 5.1 DEGREES REMARK 500 TYR A 66 CZ - CE2 - CD2 ANGL. DEV. = -5.8 DEGREES REMARK 500 ASP A 92 CB - CG - OD1 ANGL. DEV. = 8.0 DEGREES REMARK 500 ASP A 92 CB - CG - OD2 ANGL. DEV. = -6.3 DEGREES REMARK 500 ARG A 95 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG A 95 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 ARG A 102 NH1 - CZ - NH2 ANGL. DEV. = 10.1 DEGREES REMARK 500 ARG A 102 NE - CZ - NH2 ANGL. DEV. = -9.0 DEGREES REMARK 500 ARG A 121 CG - CD - NE ANGL. DEV. = -13.8 DEGREES REMARK 500 ARG A 121 NE - CZ - NH2 ANGL. DEV. = -5.2 DEGREES REMARK 500 GLU A 142 OE1 - CD - OE2 ANGL. DEV. = -7.9 DEGREES REMARK 500 GLU A 144 CG - CD - OE1 ANGL. DEV. = 12.6 DEGREES REMARK 500 ASP A 159 CB - CG - OD2 ANGL. DEV. = 6.8 DEGREES REMARK 500 GLU A 160 OE1 - CD - OE2 ANGL. DEV. = -8.3 DEGREES REMARK 500 TYR A 187 CB - CG - CD1 ANGL. DEV. = -4.4 DEGREES REMARK 500 TYR A 187 CG - CD2 - CE2 ANGL. DEV. = -6.0 DEGREES REMARK 500 PHE A 188 CB - CG - CD2 ANGL. DEV. = -9.0 DEGREES REMARK 500 PHE A 188 CB - CG - CD1 ANGL. DEV. = 7.4 DEGREES REMARK 500 ARG A 195 NE - CZ - NH2 ANGL. DEV. = 4.3 DEGREES REMARK 500 ASP A 207 CB - CG - OD1 ANGL. DEV. = 10.6 DEGREES REMARK 500 ASP A 221 CB - CG - OD1 ANGL. DEV. = -7.9 DEGREES REMARK 500 ASP A 221 CB - CG - OD2 ANGL. DEV. = 8.0 DEGREES REMARK 500 ASP A 259 CB - CG - OD1 ANGL. DEV. = 11.6 DEGREES REMARK 500 TYR A 268 CB - CG - CD1 ANGL. DEV. = -3.8 DEGREES REMARK 500 ASP B 10 CB - CG - OD1 ANGL. DEV. = 5.6 DEGREES REMARK 500 ASP B 10 CB - CG - OD2 ANGL. DEV. = -6.4 DEGREES REMARK 500 ASP B 19 CB - CG - OD1 ANGL. DEV. = 5.9 DEGREES REMARK 500 PRO B 24 CA - C - N ANGL. DEV. = 13.6 DEGREES REMARK 500 ARG B 34 CD - NE - CZ ANGL. DEV. = 19.8 DEGREES REMARK 500 ARG B 34 CD - NE - CZ ANGL. DEV. = 10.2 DEGREES REMARK 500 ARG B 34 NE - CZ - NH2 ANGL. DEV. = 3.6 DEGREES REMARK 500 ARG B 36 NE - CZ - NH1 ANGL. DEV. = 4.5 DEGREES REMARK 500 ARG B 36 NE - CZ - NH2 ANGL. DEV. = -5.5 DEGREES REMARK 500 TYR B 48 CB - CG - CD2 ANGL. DEV. = -5.0 DEGREES REMARK 500 ASP B 65 CB - CG - OD2 ANGL. DEV. = -7.3 DEGREES REMARK 500 ASP B 80 CB - CG - OD2 ANGL. DEV. = 6.7 DEGREES REMARK 500 ASP B 92 CB - CG - OD1 ANGL. DEV. = 5.8 DEGREES REMARK 500 ARG B 102 NE - CZ - NH2 ANGL. DEV. = -4.1 DEGREES REMARK 500 ASP B 112 CB - CG - OD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 ARG B 113 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG B 121 NH1 - CZ - NH2 ANGL. DEV. = 8.6 DEGREES REMARK 500 ARG B 121 NE - CZ - NH2 ANGL. DEV. = -8.2 DEGREES REMARK 500 GLU B 142 OE1 - CD - OE2 ANGL. DEV. = -8.8 DEGREES REMARK 500 GLU B 142 CG - CD - OE1 ANGL. DEV. = 12.3 DEGREES REMARK 500 ARG B 170 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 58 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 11 -72.49 -94.19 REMARK 500 THR A 14 -77.07 -129.53 REMARK 500 ASP A 112 -163.43 -111.87 REMARK 500 ASP A 221 -23.76 -140.40 REMARK 500 VAL A 269 -58.71 -120.34 REMARK 500 MET B 11 -72.67 -92.29 REMARK 500 THR B 14 -79.09 -127.59 REMARK 500 ASP B 112 -163.58 -107.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ASP B 259 -11.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1273 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 10 OD2 REMARK 620 2 ASP A 12 O 87.3 REMARK 620 3 ASP A 221 OD1 83.3 92.6 REMARK 620 4 HOH A1274 O 88.8 175.0 90.0 REMARK 620 5 HOH A1275 O 167.5 87.1 85.9 97.4 REMARK 620 6 HOH A1276 O 105.5 92.2 170.2 85.9 85.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B2273 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 10 OD2 REMARK 620 2 ASP B 12 O 86.1 REMARK 620 3 ASP B 221 OD1 85.2 93.7 REMARK 620 4 HOH B2274 O 168.1 87.8 85.0 REMARK 620 5 HOH B2275 O 91.2 175.7 89.3 95.5 REMARK 620 6 HOH B2276 O 105.4 91.6 168.4 84.9 86.0 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 1272 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 2272 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 1273 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 2273 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: NYSGXRC-T1436 RELATED DB: TARGETDB DBREF 1RKQ A 3 271 UNP P0A8Y5 YIDA_ECOLI 2 270 DBREF 1RKQ B 3 271 UNP P0A8Y5 YIDA_ECOLI 2 270 SEQADV 1RKQ MET A 0 UNP P0A8Y5 INITIATING METHIONINE SEQADV 1RKQ SER A 1 UNP P0A8Y5 CLONING ARTIFACT SEQADV 1RKQ LEU A 2 UNP P0A8Y5 CLONING ARTIFACT SEQADV 1RKQ VAL A 238 UNP P0A8Y5 MET 237 CONFLICT SEQADV 1RKQ GLU A 272 UNP P0A8Y5 CLONING ARTIFACT SEQADV 1RKQ GLY A 273 UNP P0A8Y5 CLONING ARTIFACT SEQADV 1RKQ GLY A 274 UNP P0A8Y5 CLONING ARTIFACT SEQADV 1RKQ SER A 275 UNP P0A8Y5 CLONING ARTIFACT SEQADV 1RKQ HIS A 276 UNP P0A8Y5 EXPRESSION TAG SEQADV 1RKQ HIS A 277 UNP P0A8Y5 EXPRESSION TAG SEQADV 1RKQ HIS A 278 UNP P0A8Y5 EXPRESSION TAG SEQADV 1RKQ HIS A 279 UNP P0A8Y5 EXPRESSION TAG SEQADV 1RKQ HIS A 280 UNP P0A8Y5 EXPRESSION TAG SEQADV 1RKQ HIS A 281 UNP P0A8Y5 EXPRESSION TAG SEQADV 1RKQ MET B 0 UNP P0A8Y5 INITIATING METHIONINE SEQADV 1RKQ SER B 1 UNP P0A8Y5 CLONING ARTIFACT SEQADV 1RKQ LEU B 2 UNP P0A8Y5 CLONING ARTIFACT SEQADV 1RKQ VAL B 238 UNP P0A8Y5 MET 237 CONFLICT SEQADV 1RKQ GLU B 272 UNP P0A8Y5 CLONING ARTIFACT SEQADV 1RKQ GLY B 273 UNP P0A8Y5 CLONING ARTIFACT SEQADV 1RKQ GLY B 274 UNP P0A8Y5 CLONING ARTIFACT SEQADV 1RKQ SER B 275 UNP P0A8Y5 CLONING ARTIFACT SEQADV 1RKQ HIS B 276 UNP P0A8Y5 EXPRESSION TAG SEQADV 1RKQ HIS B 277 UNP P0A8Y5 EXPRESSION TAG SEQADV 1RKQ HIS B 278 UNP P0A8Y5 EXPRESSION TAG SEQADV 1RKQ HIS B 279 UNP P0A8Y5 EXPRESSION TAG SEQADV 1RKQ HIS B 280 UNP P0A8Y5 EXPRESSION TAG SEQADV 1RKQ HIS B 281 UNP P0A8Y5 EXPRESSION TAG SEQRES 1 A 282 MET SER LEU ALA ILE LYS LEU ILE ALA ILE ASP MET ASP SEQRES 2 A 282 GLY THR LEU LEU LEU PRO ASP HIS THR ILE SER PRO ALA SEQRES 3 A 282 VAL LYS ASN ALA ILE ALA ALA ALA ARG ALA ARG GLY VAL SEQRES 4 A 282 ASN VAL VAL LEU THR THR GLY ARG PRO TYR ALA GLY VAL SEQRES 5 A 282 HIS ASN TYR LEU LYS GLU LEU HIS MET GLU GLN PRO GLY SEQRES 6 A 282 ASP TYR CYS ILE THR TYR ASN GLY ALA LEU VAL GLN LYS SEQRES 7 A 282 ALA ALA ASP GLY SER THR VAL ALA GLN THR ALA LEU SER SEQRES 8 A 282 TYR ASP ASP TYR ARG PHE LEU GLU LYS LEU SER ARG GLU SEQRES 9 A 282 VAL GLY SER HIS PHE HIS ALA LEU ASP ARG THR THR LEU SEQRES 10 A 282 TYR THR ALA ASN ARG ASP ILE SER TYR TYR THR VAL HIS SEQRES 11 A 282 GLU SER PHE VAL ALA THR ILE PRO LEU VAL PHE CYS GLU SEQRES 12 A 282 ALA GLU LYS MET ASP PRO ASN THR GLN PHE LEU LYS VAL SEQRES 13 A 282 MET MET ILE ASP GLU PRO ALA ILE LEU ASP GLN ALA ILE SEQRES 14 A 282 ALA ARG ILE PRO GLN GLU VAL LYS GLU LYS TYR THR VAL SEQRES 15 A 282 LEU LYS SER ALA PRO TYR PHE LEU GLU ILE LEU ASP LYS SEQRES 16 A 282 ARG VAL ASN LYS GLY THR GLY VAL LYS SER LEU ALA ASP SEQRES 17 A 282 VAL LEU GLY ILE LYS PRO GLU GLU ILE MET ALA ILE GLY SEQRES 18 A 282 ASP GLN GLU ASN ASP ILE ALA MET ILE GLU TYR ALA GLY SEQRES 19 A 282 VAL GLY VAL ALA VAL ASP ASN ALA ILE PRO SER VAL LYS SEQRES 20 A 282 GLU VAL ALA ASN PHE VAL THR LYS SER ASN LEU GLU ASP SEQRES 21 A 282 GLY VAL ALA PHE ALA ILE GLU LYS TYR VAL LEU ASN GLU SEQRES 22 A 282 GLY GLY SER HIS HIS HIS HIS HIS HIS SEQRES 1 B 282 MET SER LEU ALA ILE LYS LEU ILE ALA ILE ASP MET ASP SEQRES 2 B 282 GLY THR LEU LEU LEU PRO ASP HIS THR ILE SER PRO ALA SEQRES 3 B 282 VAL LYS ASN ALA ILE ALA ALA ALA ARG ALA ARG GLY VAL SEQRES 4 B 282 ASN VAL VAL LEU THR THR GLY ARG PRO TYR ALA GLY VAL SEQRES 5 B 282 HIS ASN TYR LEU LYS GLU LEU HIS MET GLU GLN PRO GLY SEQRES 6 B 282 ASP TYR CYS ILE THR TYR ASN GLY ALA LEU VAL GLN LYS SEQRES 7 B 282 ALA ALA ASP GLY SER THR VAL ALA GLN THR ALA LEU SER SEQRES 8 B 282 TYR ASP ASP TYR ARG PHE LEU GLU LYS LEU SER ARG GLU SEQRES 9 B 282 VAL GLY SER HIS PHE HIS ALA LEU ASP ARG THR THR LEU SEQRES 10 B 282 TYR THR ALA ASN ARG ASP ILE SER TYR TYR THR VAL HIS SEQRES 11 B 282 GLU SER PHE VAL ALA THR ILE PRO LEU VAL PHE CYS GLU SEQRES 12 B 282 ALA GLU LYS MET ASP PRO ASN THR GLN PHE LEU LYS VAL SEQRES 13 B 282 MET MET ILE ASP GLU PRO ALA ILE LEU ASP GLN ALA ILE SEQRES 14 B 282 ALA ARG ILE PRO GLN GLU VAL LYS GLU LYS TYR THR VAL SEQRES 15 B 282 LEU LYS SER ALA PRO TYR PHE LEU GLU ILE LEU ASP LYS SEQRES 16 B 282 ARG VAL ASN LYS GLY THR GLY VAL LYS SER LEU ALA ASP SEQRES 17 B 282 VAL LEU GLY ILE LYS PRO GLU GLU ILE MET ALA ILE GLY SEQRES 18 B 282 ASP GLN GLU ASN ASP ILE ALA MET ILE GLU TYR ALA GLY SEQRES 19 B 282 VAL GLY VAL ALA VAL ASP ASN ALA ILE PRO SER VAL LYS SEQRES 20 B 282 GLU VAL ALA ASN PHE VAL THR LYS SER ASN LEU GLU ASP SEQRES 21 B 282 GLY VAL ALA PHE ALA ILE GLU LYS TYR VAL LEU ASN GLU SEQRES 22 B 282 GLY GLY SER HIS HIS HIS HIS HIS HIS HET CL A1272 1 HET MG A1273 1 HET CL B2272 1 HET MG B2273 1 HETNAM CL CHLORIDE ION HETNAM MG MAGNESIUM ION FORMUL 3 CL 2(CL 1-) FORMUL 4 MG 2(MG 2+) FORMUL 7 HOH *618(H2 O) HELIX 1 1 SER A 23 ARG A 36 1 14 HELIX 2 2 PRO A 47 GLY A 50 5 4 HELIX 3 3 VAL A 51 LEU A 58 1 8 HELIX 4 4 TYR A 70 GLY A 72 5 3 HELIX 5 5 SER A 90 GLY A 105 1 16 HELIX 6 6 SER A 124 ALA A 134 1 11 HELIX 7 7 GLU A 142 MET A 146 5 5 HELIX 8 8 GLU A 160 ILE A 171 1 12 HELIX 9 9 PRO A 172 LYS A 178 1 7 HELIX 10 10 ASN A 197 GLY A 210 1 14 HELIX 11 11 LYS A 212 GLU A 214 5 3 HELIX 12 12 GLN A 222 ASN A 224 5 3 HELIX 13 13 ASP A 225 ALA A 232 1 8 HELIX 14 14 ILE A 242 ALA A 249 1 8 HELIX 15 15 ASP A 259 VAL A 269 1 11 HELIX 16 16 SER B 23 ARG B 36 1 14 HELIX 17 17 PRO B 47 GLY B 50 5 4 HELIX 18 18 VAL B 51 LEU B 58 1 8 HELIX 19 19 TYR B 70 GLY B 72 5 3 HELIX 20 20 SER B 90 GLY B 105 1 16 HELIX 21 21 SER B 124 ALA B 134 1 11 HELIX 22 22 GLU B 142 MET B 146 5 5 HELIX 23 23 GLU B 160 ARG B 170 1 11 HELIX 24 24 PRO B 172 LYS B 178 1 7 HELIX 25 25 ASN B 197 GLY B 210 1 14 HELIX 26 26 LYS B 212 GLU B 214 5 3 HELIX 27 27 GLN B 222 ASN B 224 5 3 HELIX 28 28 ASP B 225 ALA B 232 1 8 HELIX 29 29 ILE B 242 GLU B 247 1 6 HELIX 30 30 ASP B 259 VAL B 269 1 11 SHEET 1 A 8 THR A 83 GLN A 86 0 SHEET 2 A 8 LEU A 74 LYS A 77 -1 N VAL A 75 O VAL A 84 SHEET 3 A 8 TYR A 66 THR A 69 -1 N CYS A 67 O GLN A 76 SHEET 4 A 8 ASN A 39 THR A 43 1 N LEU A 42 O ILE A 68 SHEET 5 A 8 LEU A 6 ILE A 9 1 N ILE A 7 O VAL A 41 SHEET 6 A 8 ILE A 216 GLY A 220 1 O MET A 217 N ALA A 8 SHEET 7 A 8 VAL A 234 ALA A 237 1 O VAL A 236 N ALA A 218 SHEET 8 A 8 PHE A 251 VAL A 252 1 O PHE A 251 N ALA A 237 SHEET 1 B 6 LEU A 138 PHE A 140 0 SHEET 2 B 6 LEU A 116 THR A 118 1 N LEU A 116 O VAL A 139 SHEET 3 B 6 HIS A 107 LEU A 111 -1 N ALA A 110 O TYR A 117 SHEET 4 B 6 LYS A 154 ILE A 158 -1 O LYS A 154 N LEU A 111 SHEET 5 B 6 PHE A 188 ASP A 193 -1 O LEU A 189 N MET A 157 SHEET 6 B 6 TYR A 179 ALA A 185 -1 N LEU A 182 O GLU A 190 SHEET 1 C 5 ASN B 39 LEU B 42 0 SHEET 2 C 5 LEU B 6 ILE B 9 1 N ILE B 7 O VAL B 41 SHEET 3 C 5 ILE B 216 GLY B 220 1 O MET B 217 N ALA B 8 SHEET 4 C 5 VAL B 234 ALA B 237 1 O VAL B 236 N ALA B 218 SHEET 5 C 5 PHE B 251 VAL B 252 1 O PHE B 251 N ALA B 237 SHEET 1 D 3 TYR B 66 THR B 69 0 SHEET 2 D 3 LEU B 74 LYS B 77 -1 O GLN B 76 N CYS B 67 SHEET 3 D 3 THR B 83 GLN B 86 -1 O VAL B 84 N VAL B 75 SHEET 1 E 6 LEU B 138 PHE B 140 0 SHEET 2 E 6 LEU B 116 THR B 118 1 N LEU B 116 O VAL B 139 SHEET 3 E 6 HIS B 107 LEU B 111 -1 N ALA B 110 O TYR B 117 SHEET 4 E 6 LYS B 154 ILE B 158 -1 O MET B 156 N HIS B 109 SHEET 5 E 6 PHE B 188 ASP B 193 -1 O LEU B 189 N MET B 157 SHEET 6 E 6 TYR B 179 ALA B 185 -1 N LEU B 182 O GLU B 190 LINK OD2 ASP A 10 MG MG A1273 1555 1555 2.16 LINK O ASP A 12 MG MG A1273 1555 1555 2.17 LINK OD1 ASP A 221 MG MG A1273 1555 1555 2.19 LINK MG MG A1273 O HOH A1274 1555 1555 2.19 LINK MG MG A1273 O HOH A1275 1555 1555 2.18 LINK MG MG A1273 O HOH A1276 1555 1555 2.15 LINK OD2 ASP B 10 MG MG B2273 1555 1555 2.15 LINK O ASP B 12 MG MG B2273 1555 1555 2.19 LINK OD1 ASP B 221 MG MG B2273 1555 1555 2.14 LINK MG MG B2273 O HOH B2274 1555 1555 2.17 LINK MG MG B2273 O HOH B2275 1555 1555 2.17 LINK MG MG B2273 O HOH B2276 1555 1555 2.15 SITE 1 AC1 5 ASP A 10 GLY A 45 LYS A 198 ASN A 224 SITE 2 AC1 5 HOH A1276 SITE 1 AC2 5 ASP B 10 GLY B 45 LYS B 198 ASN B 224 SITE 2 AC2 5 HOH B2276 SITE 1 AC3 6 ASP A 10 ASP A 12 ASP A 221 HOH A1274 SITE 2 AC3 6 HOH A1275 HOH A1276 SITE 1 AC4 6 ASP B 10 ASP B 12 ASP B 221 HOH B2274 SITE 2 AC4 6 HOH B2275 HOH B2276 CRYST1 45.120 54.871 67.725 112.58 96.37 106.79 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022163 0.006687 0.006002 0.00000 SCALE2 0.000000 0.019036 0.009255 0.00000 SCALE3 0.000000 0.000000 0.016520 0.00000