data_1RMX # _entry.id 1RMX # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.392 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1RMX pdb_00001rmx 10.2210/pdb1rmx/pdb RCSB RCSB020892 ? ? WWPDB D_1000020892 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2004-08-24 2 'Structure model' 1 1 2008-04-29 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-03-02 5 'Structure model' 1 4 2024-05-22 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 5 'Structure model' 'Data collection' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_nmr_software 3 4 'Structure model' pdbx_nmr_spectrometer 4 4 'Structure model' pdbx_struct_assembly 5 4 'Structure model' pdbx_struct_oper_list 6 4 'Structure model' struct_site 7 5 'Structure model' chem_comp_atom 8 5 'Structure model' chem_comp_bond # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_nmr_software.name' 4 4 'Structure model' '_pdbx_nmr_spectrometer.model' 5 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 6 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 7 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1RMX _pdbx_database_status.recvd_initial_deposition_date 2003-11-28 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_mr REL _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 1RN9 _pdbx_database_related.details ;A SHORT LEXITROPSIN THAT RECOGNIZES THE DNA MINOR GROOVE AT 5'-ACTAGT-3': UNDERSTANDING THE ROLE OF ISOPROPYL-THIAZOLE ; _pdbx_database_related.content_type unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Anthony, N.G.' 1 'Johnston, B.F.' 2 'Khalaf, A.I.' 3 'Mackay, S.P.' 4 'Parkinson, J.A.' 5 'Suckling, C.J.' 6 'Waigh, R.D.' 7 # _citation.id primary _citation.title ;Short Lexitropsin that Recognizes the DNA Minor Groove at 5'-ACTAGT-3': Understanding the Role of Isopropyl-thiazole. ; _citation.journal_abbrev J.Am.Chem.Soc. _citation.journal_volume 126 _citation.page_first 11338 _citation.page_last 11349 _citation.year 2004 _citation.journal_id_ASTM JACSAT _citation.country US _citation.journal_id_ISSN 0002-7863 _citation.journal_id_CSD 0004 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 15355117 _citation.pdbx_database_id_DOI 10.1021/ja030658n # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Anthony, N.G.' 1 ? primary 'Johnston, B.F.' 2 ? primary 'Khalaf, A.I.' 3 ? primary 'MacKay, S.P.' 4 ? primary 'Parkinson, J.A.' 5 ? primary 'Suckling, C.J.' 6 ? primary 'Waigh, R.D.' 7 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "5'-D(*CP*GP*AP*CP*TP*AP*GP*TP*CP*G)-3'" 3045.005 2 ? ? ? ? 2 non-polymer syn ;N-[3-(DIMETHYLAMINO)PROPYL]-2-({[4-({[4-(FORMYLAMINO)-1-METHYL-1H-PYRROL-2-YL]CARBONYL}AMINO)-1-METHYL-1H-PYRROL-2-YL]CARBONYL}AMINO)-5-ISOPROPYL-1,3-THIAZOLE-4-CARBOXAMIDE ; 542.654 2 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code '(DC)(DG)(DA)(DC)(DT)(DA)(DG)(DT)(DC)(DG)' _entity_poly.pdbx_seq_one_letter_code_can CGACTAGTCG _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name ;N-[3-(DIMETHYLAMINO)PROPYL]-2-({[4-({[4-(FORMYLAMINO)-1-METHYL-1H-PYRROL-2-YL]CARBONYL}AMINO)-1-METHYL-1H-PYRROL-2-YL]CARBONYL}AMINO)-5-ISOPROPYL-1,3-THIAZOLE-4-CARBOXAMIDE ; _pdbx_entity_nonpoly.comp_id AIK # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DG n 1 3 DA n 1 4 DC n 1 5 DT n 1 6 DA n 1 7 DG n 1 8 DT n 1 9 DC n 1 10 DG n # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight AIK non-polymer . ;N-[3-(DIMETHYLAMINO)PROPYL]-2-({[4-({[4-(FORMYLAMINO)-1-METHYL-1H-PYRROL-2-YL]CARBONYL}AMINO)-1-METHYL-1H-PYRROL-2-YL]CARBONYL}AMINO)-5-ISOPROPYL-1,3-THIAZOLE-4-CARBOXAMIDE ; ? 'C25 H34 N8 O4 S' 542.654 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC C A . n A 1 2 DG 2 2 2 DG G A . n A 1 3 DA 3 3 3 DA A A . n A 1 4 DC 4 4 4 DC C A . n A 1 5 DT 5 5 5 DT T A . n A 1 6 DA 6 6 6 DA A A . n A 1 7 DG 7 7 7 DG G A . n A 1 8 DT 8 8 8 DT T A . n A 1 9 DC 9 9 9 DC C A . n A 1 10 DG 10 10 10 DG G A . n B 1 1 DC 1 11 11 DC C B . n B 1 2 DG 2 12 12 DG G B . n B 1 3 DA 3 13 13 DA A B . n B 1 4 DC 4 14 14 DC C B . n B 1 5 DT 5 15 15 DT T B . n B 1 6 DA 6 16 16 DA A B . n B 1 7 DG 7 17 17 DG G B . n B 1 8 DT 8 18 18 DT T B . n B 1 9 DC 9 19 19 DC C B . n B 1 10 DG 10 20 20 DG G B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 AIK 1 11 1 AIK L A . D 2 AIK 1 2 2 AIK L B . # _exptl.entry_id 1RMX _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol ? _exptl_crystal.density_Matthews ? _exptl_crystal.description ? # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type ? # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _database_PDB_matrix.entry_id 1RMX _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1RMX _struct.title ;A SHORT LEXITROPSIN THAT RECOGNIZES THE DNA MINOR GROOVE AT 5'-ACTAGT-3': UNDERSTANDING THE ROLE OF ISOPROPYL-THIAZOLE ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details 'minimized average' # _struct_keywords.entry_id 1RMX _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'MINOR-GROOVE-DNA COMPLEX, SIDE-BY-SIDE BINDING, DNA RECOGNITION, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 1RMX _struct_ref.pdbx_db_accession 1RMX _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1RMX A 1 ? 10 ? 1RMX 1 ? 10 ? 1 10 2 1 1RMX B 1 ? 10 ? 1RMX 11 ? 20 ? 11 20 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A DC 1 N3 ? ? ? 1_555 B DG 10 N1 ? ? A DC 1 B DG 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 B DG 10 O6 ? ? A DC 1 B DG 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 1 O2 ? ? ? 1_555 B DG 10 N2 ? ? A DC 1 B DG 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DG 2 N1 ? ? ? 1_555 B DC 9 N3 ? ? A DG 2 B DC 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DG 2 N2 ? ? ? 1_555 B DC 9 O2 ? ? A DG 2 B DC 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DG 2 O6 ? ? ? 1_555 B DC 9 N4 ? ? A DG 2 B DC 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DA 3 N1 ? ? ? 1_555 B DG 7 N1 ? ? A DA 3 B DG 17 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog8 hydrog ? ? A DA 3 N6 ? ? ? 1_555 B DG 7 O6 ? ? A DA 3 B DG 17 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog9 hydrog ? ? A DA 3 N1 ? ? ? 1_555 B DT 8 N3 ? ? A DA 3 B DT 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DA 3 N6 ? ? ? 1_555 B DT 8 O4 ? ? A DA 3 B DT 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DC 4 N3 ? ? ? 1_555 B DG 7 N1 ? ? A DC 4 B DG 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DC 4 N4 ? ? ? 1_555 B DG 7 O6 ? ? A DC 4 B DG 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DC 4 O2 ? ? ? 1_555 B DG 7 N2 ? ? A DC 4 B DG 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DT 5 N3 ? ? ? 1_555 B DA 6 N1 ? ? A DT 5 B DA 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DT 5 O4 ? ? ? 1_555 B DA 6 N6 ? ? A DT 5 B DA 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DT 5 O2 ? ? ? 1_555 B DG 7 N2 ? ? A DT 5 B DG 17 1_555 ? ? ? ? ? ? 'DT-DG MISPAIR' ? ? ? hydrog17 hydrog ? ? A DA 6 N1 ? ? ? 1_555 B DT 5 N3 ? ? A DA 6 B DT 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DA 6 N6 ? ? ? 1_555 B DT 5 O4 ? ? A DA 6 B DT 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DG 7 N1 ? ? ? 1_555 B DA 3 N1 ? ? A DG 7 B DA 13 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog20 hydrog ? ? A DG 7 O6 ? ? ? 1_555 B DA 3 N6 ? ? A DG 7 B DA 13 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog21 hydrog ? ? A DG 7 N1 ? ? ? 1_555 B DC 4 N3 ? ? A DG 7 B DC 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DG 7 N2 ? ? ? 1_555 B DC 4 O2 ? ? A DG 7 B DC 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DG 7 O6 ? ? ? 1_555 B DC 4 N4 ? ? A DG 7 B DC 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DG 7 N2 ? ? ? 1_555 B DT 5 O2 ? ? A DG 7 B DT 15 1_555 ? ? ? ? ? ? 'DG-DT MISPAIR' ? ? ? hydrog25 hydrog ? ? A DT 8 N3 ? ? ? 1_555 B DA 3 N1 ? ? A DT 8 B DA 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DT 8 O4 ? ? ? 1_555 B DA 3 N6 ? ? A DT 8 B DA 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A DC 9 N3 ? ? ? 1_555 B DG 2 N1 ? ? A DC 9 B DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A DC 9 N4 ? ? ? 1_555 B DG 2 O6 ? ? A DC 9 B DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A DC 9 O2 ? ? ? 1_555 B DG 2 N2 ? ? A DC 9 B DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A DG 10 N1 ? ? ? 1_555 B DC 1 N3 ? ? A DG 10 B DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A DG 10 N2 ? ? ? 1_555 B DC 1 O2 ? ? A DG 10 B DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A DG 10 O6 ? ? ? 1_555 B DC 1 N4 ? ? A DG 10 B DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A AIK 11 ? 8 'BINDING SITE FOR RESIDUE AIK A 11' AC2 Software B AIK 2 ? 8 'BINDING SITE FOR RESIDUE AIK B 2' 1 ? ? ? ? ? ? ? # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 8 DT A 5 ? DT A 5 . ? 1_555 ? 2 AC1 8 DA A 6 ? DA A 6 . ? 1_555 ? 3 AC1 8 DG A 7 ? DG A 7 . ? 1_555 ? 4 AC1 8 DT A 8 ? DT A 8 . ? 1_555 ? 5 AC1 8 DC A 9 ? DC A 9 . ? 1_555 ? 6 AC1 8 AIK D . ? AIK B 2 . ? 1_555 ? 7 AC1 8 DA B 3 ? DA B 13 . ? 1_555 ? 8 AC1 8 DG B 7 ? DG B 17 . ? 1_555 ? 9 AC2 8 DG A 7 ? DG A 7 . ? 1_555 ? 10 AC2 8 AIK C . ? AIK A 11 . ? 1_555 ? 11 AC2 8 DT B 5 ? DT B 15 . ? 1_555 ? 12 AC2 8 DA B 6 ? DA B 16 . ? 1_555 ? 13 AC2 8 DG B 7 ? DG B 17 . ? 1_555 ? 14 AC2 8 DT B 8 ? DT B 18 . ? 1_555 ? 15 AC2 8 DC B 9 ? DC B 19 . ? 1_555 ? 16 AC2 8 DG B 10 ? DG B 20 . ? 1_555 ? # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 C2 A DC 1 ? ? N3 A DC 1 ? ? 1.441 1.353 0.088 0.008 N 2 1 N3 A DC 1 ? ? C4 A DC 1 ? ? 1.268 1.335 -0.067 0.007 N 3 1 C4 A DC 1 ? ? C5 A DC 1 ? ? 1.474 1.425 0.049 0.008 N 4 1 C2 A DG 2 ? ? N3 A DG 2 ? ? 1.268 1.323 -0.055 0.008 N 5 1 N3 A DG 2 ? ? C4 A DG 2 ? ? 1.436 1.350 0.086 0.007 N 6 1 C4 A DG 2 ? ? C5 A DG 2 ? ? 1.328 1.379 -0.051 0.007 N 7 1 C5 A DG 2 ? ? N7 A DG 2 ? ? 1.442 1.388 0.054 0.006 N 8 1 N7 A DG 2 ? ? C8 A DG 2 ? ? 1.261 1.305 -0.044 0.006 N 9 1 C8 A DG 2 ? ? N9 A DG 2 ? ? 1.300 1.374 -0.074 0.007 N 10 1 N9 A DG 2 ? ? C4 A DG 2 ? ? 1.305 1.375 -0.070 0.008 N 11 1 C5 A DA 3 ? ? N7 A DA 3 ? ? 1.342 1.388 -0.046 0.006 N 12 1 N7 A DA 3 ? ? C8 A DA 3 ? ? 1.267 1.311 -0.044 0.007 N 13 1 C8 A DA 3 ? ? N9 A DA 3 ? ? 1.308 1.373 -0.065 0.008 N 14 1 C2 A DC 4 ? ? N3 A DC 4 ? ? 1.441 1.353 0.088 0.008 N 15 1 N3 A DC 4 ? ? C4 A DC 4 ? ? 1.269 1.335 -0.066 0.007 N 16 1 C5 A DA 6 ? ? N7 A DA 6 ? ? 1.342 1.388 -0.046 0.006 N 17 1 N7 A DA 6 ? ? C8 A DA 6 ? ? 1.267 1.311 -0.044 0.007 N 18 1 C8 A DA 6 ? ? N9 A DA 6 ? ? 1.305 1.373 -0.068 0.008 N 19 1 N3 A DG 7 ? ? C4 A DG 7 ? ? 1.450 1.350 0.100 0.007 N 20 1 C4 A DG 7 ? ? C5 A DG 7 ? ? 1.333 1.379 -0.046 0.007 N 21 1 C6 A DG 7 ? ? N1 A DG 7 ? ? 1.343 1.391 -0.048 0.007 N 22 1 C5 A DG 7 ? ? N7 A DG 7 ? ? 1.435 1.388 0.047 0.006 N 23 1 N7 A DG 7 ? ? C8 A DG 7 ? ? 1.255 1.305 -0.050 0.006 N 24 1 C8 A DG 7 ? ? N9 A DG 7 ? ? 1.304 1.374 -0.070 0.007 N 25 1 N9 A DG 7 ? ? C4 A DG 7 ? ? 1.323 1.375 -0.052 0.008 N 26 1 C2 A DC 9 ? ? N3 A DC 9 ? ? 1.441 1.353 0.088 0.008 N 27 1 N3 A DC 9 ? ? C4 A DC 9 ? ? 1.267 1.335 -0.068 0.007 N 28 1 C2 A DG 10 ? ? N3 A DG 10 ? ? 1.270 1.323 -0.053 0.008 N 29 1 N3 A DG 10 ? ? C4 A DG 10 ? ? 1.439 1.350 0.089 0.007 N 30 1 C4 A DG 10 ? ? C5 A DG 10 ? ? 1.331 1.379 -0.048 0.007 N 31 1 C5 A DG 10 ? ? N7 A DG 10 ? ? 1.441 1.388 0.053 0.006 N 32 1 N7 A DG 10 ? ? C8 A DG 10 ? ? 1.259 1.305 -0.046 0.006 N 33 1 C8 A DG 10 ? ? N9 A DG 10 ? ? 1.299 1.374 -0.075 0.007 N 34 1 N9 A DG 10 ? ? C4 A DG 10 ? ? 1.307 1.375 -0.068 0.008 N 35 1 C2 B DC 11 ? ? N3 B DC 11 ? ? 1.440 1.353 0.087 0.008 N 36 1 N3 B DC 11 ? ? C4 B DC 11 ? ? 1.268 1.335 -0.067 0.007 N 37 1 C4 B DC 11 ? ? C5 B DC 11 ? ? 1.474 1.425 0.049 0.008 N 38 1 C2 B DG 12 ? ? N3 B DG 12 ? ? 1.270 1.323 -0.053 0.008 N 39 1 N3 B DG 12 ? ? C4 B DG 12 ? ? 1.439 1.350 0.089 0.007 N 40 1 C4 B DG 12 ? ? C5 B DG 12 ? ? 1.329 1.379 -0.050 0.007 N 41 1 C5 B DG 12 ? ? N7 B DG 12 ? ? 1.442 1.388 0.054 0.006 N 42 1 N7 B DG 12 ? ? C8 B DG 12 ? ? 1.260 1.305 -0.045 0.006 N 43 1 C8 B DG 12 ? ? N9 B DG 12 ? ? 1.302 1.374 -0.072 0.007 N 44 1 N9 B DG 12 ? ? C4 B DG 12 ? ? 1.309 1.375 -0.066 0.008 N 45 1 C5 B DA 13 ? ? N7 B DA 13 ? ? 1.343 1.388 -0.045 0.006 N 46 1 N7 B DA 13 ? ? C8 B DA 13 ? ? 1.267 1.311 -0.044 0.007 N 47 1 C8 B DA 13 ? ? N9 B DA 13 ? ? 1.307 1.373 -0.066 0.008 N 48 1 C2 B DC 14 ? ? N3 B DC 14 ? ? 1.440 1.353 0.087 0.008 N 49 1 N3 B DC 14 ? ? C4 B DC 14 ? ? 1.268 1.335 -0.067 0.007 N 50 1 C4 B DC 14 ? ? C5 B DC 14 ? ? 1.473 1.425 0.048 0.008 N 51 1 C5 B DA 16 ? ? N7 B DA 16 ? ? 1.339 1.388 -0.049 0.006 N 52 1 N7 B DA 16 ? ? C8 B DA 16 ? ? 1.264 1.311 -0.047 0.007 N 53 1 C8 B DA 16 ? ? N9 B DA 16 ? ? 1.313 1.373 -0.060 0.008 N 54 1 N3 B DG 17 ? ? C4 B DG 17 ? ? 1.449 1.350 0.099 0.007 N 55 1 C4 B DG 17 ? ? C5 B DG 17 ? ? 1.333 1.379 -0.046 0.007 N 56 1 C6 B DG 17 ? ? N1 B DG 17 ? ? 1.346 1.391 -0.045 0.007 N 57 1 C5 B DG 17 ? ? N7 B DG 17 ? ? 1.436 1.388 0.048 0.006 N 58 1 N7 B DG 17 ? ? C8 B DG 17 ? ? 1.255 1.305 -0.050 0.006 N 59 1 C8 B DG 17 ? ? N9 B DG 17 ? ? 1.303 1.374 -0.071 0.007 N 60 1 N9 B DG 17 ? ? C4 B DG 17 ? ? 1.320 1.375 -0.055 0.008 N 61 1 C2 B DC 19 ? ? N3 B DC 19 ? ? 1.440 1.353 0.087 0.008 N 62 1 N3 B DC 19 ? ? C4 B DC 19 ? ? 1.265 1.335 -0.070 0.007 N 63 1 C2 B DG 20 ? ? N3 B DG 20 ? ? 1.270 1.323 -0.053 0.008 N 64 1 N3 B DG 20 ? ? C4 B DG 20 ? ? 1.438 1.350 0.088 0.007 N 65 1 C4 B DG 20 ? ? C5 B DG 20 ? ? 1.330 1.379 -0.049 0.007 N 66 1 C5 B DG 20 ? ? N7 B DG 20 ? ? 1.443 1.388 0.055 0.006 N 67 1 N7 B DG 20 ? ? C8 B DG 20 ? ? 1.262 1.305 -0.043 0.006 N 68 1 C8 B DG 20 ? ? N9 B DG 20 ? ? 1.302 1.374 -0.072 0.007 N 69 1 N9 B DG 20 ? ? C4 B DG 20 ? ? 1.307 1.375 -0.068 0.008 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? "C2'" A DC 1 ? ? 100.74 105.90 -5.16 0.80 N 2 1 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 113.28 108.30 4.98 0.30 N 3 1 N3 A DC 1 ? ? C4 A DC 1 ? ? C5 A DC 1 ? ? 117.09 121.90 -4.81 0.40 N 4 1 C4 A DC 1 ? ? C5 A DC 1 ? ? C6 A DC 1 ? ? 120.98 117.40 3.58 0.50 N 5 1 N1 A DC 1 ? ? C2 A DC 1 ? ? O2 A DC 1 ? ? 123.32 118.90 4.42 0.60 N 6 1 N3 A DC 1 ? ? C2 A DC 1 ? ? O2 A DC 1 ? ? 115.37 121.90 -6.53 0.70 N 7 1 OP1 A DG 2 ? ? P A DG 2 ? ? OP2 A DG 2 ? ? 107.86 119.60 -11.74 1.50 N 8 1 "O4'" A DG 2 ? ? "C4'" A DG 2 ? ? "C3'" A DG 2 ? ? 101.04 104.50 -3.46 0.40 N 9 1 C2 A DG 2 ? ? N3 A DG 2 ? ? C4 A DG 2 ? ? 120.76 111.90 8.86 0.50 N 10 1 N3 A DG 2 ? ? C4 A DG 2 ? ? C5 A DG 2 ? ? 120.33 128.60 -8.27 0.50 N 11 1 C5 A DG 2 ? ? C6 A DG 2 ? ? N1 A DG 2 ? ? 116.77 111.50 5.27 0.50 N 12 1 C4 A DG 2 ? ? C5 A DG 2 ? ? N7 A DG 2 ? ? 101.30 110.80 -9.50 0.40 N 13 1 C5 A DG 2 ? ? N7 A DG 2 ? ? C8 A DG 2 ? ? 108.84 104.30 4.54 0.50 N 14 1 N7 A DG 2 ? ? C8 A DG 2 ? ? N9 A DG 2 ? ? 110.02 113.10 -3.08 0.50 N 15 1 N9 A DG 2 ? ? C4 A DG 2 ? ? C5 A DG 2 ? ? 111.47 105.40 6.07 0.40 N 16 1 C6 A DG 2 ? ? C5 A DG 2 ? ? N7 A DG 2 ? ? 140.57 130.40 10.17 0.60 N 17 1 C5 A DG 2 ? ? C6 A DG 2 ? ? O6 A DG 2 ? ? 120.60 128.60 -8.00 0.60 N 18 1 OP1 A DA 3 ? ? P A DA 3 ? ? OP2 A DA 3 ? ? 107.81 119.60 -11.79 1.50 N 19 1 "O4'" A DA 3 ? ? "C1'" A DA 3 ? ? "C2'" A DA 3 ? ? 98.56 105.90 -7.34 0.80 N 20 1 "O4'" A DA 3 ? ? "C1'" A DA 3 ? ? N9 A DA 3 ? ? 113.35 108.30 5.05 0.30 N 21 1 N1 A DA 3 ? ? C2 A DA 3 ? ? N3 A DA 3 ? ? 122.28 129.30 -7.02 0.50 N 22 1 C2 A DA 3 ? ? N3 A DA 3 ? ? C4 A DA 3 ? ? 118.27 110.60 7.67 0.50 N 23 1 N3 A DA 3 ? ? C4 A DA 3 ? ? C5 A DA 3 ? ? 120.14 126.80 -6.66 0.70 N 24 1 C4 A DA 3 ? ? C5 A DA 3 ? ? C6 A DA 3 ? ? 121.19 117.00 4.19 0.50 N 25 1 C4 A DA 3 ? ? C5 A DA 3 ? ? N7 A DA 3 ? ? 105.37 110.70 -5.33 0.50 N 26 1 C5 A DA 3 ? ? N7 A DA 3 ? ? C8 A DA 3 ? ? 109.73 103.90 5.83 0.50 N 27 1 N3 A DA 3 ? ? C4 A DA 3 ? ? N9 A DA 3 ? ? 133.31 127.40 5.91 0.80 N 28 1 "C3'" A DA 3 ? ? "O3'" A DA 3 ? ? P A DC 4 ? ? 133.72 119.70 14.02 1.20 Y 29 1 OP1 A DC 4 ? ? P A DC 4 ? ? OP2 A DC 4 ? ? 108.11 119.60 -11.49 1.50 N 30 1 "C5'" A DC 4 ? ? "C4'" A DC 4 ? ? "O4'" A DC 4 ? ? 117.17 109.80 7.37 1.10 N 31 1 "O4'" A DC 4 ? ? "C1'" A DC 4 ? ? "C2'" A DC 4 ? ? 100.12 105.90 -5.78 0.80 N 32 1 "O4'" A DC 4 ? ? "C1'" A DC 4 ? ? N1 A DC 4 ? ? 111.79 108.30 3.49 0.30 N 33 1 N3 A DC 4 ? ? C4 A DC 4 ? ? C5 A DC 4 ? ? 117.19 121.90 -4.71 0.40 N 34 1 N1 A DC 4 ? ? C2 A DC 4 ? ? O2 A DC 4 ? ? 123.55 118.90 4.65 0.60 N 35 1 N3 A DC 4 ? ? C2 A DC 4 ? ? O2 A DC 4 ? ? 115.42 121.90 -6.48 0.70 N 36 1 N3 A DC 4 ? ? C4 A DC 4 ? ? N4 A DC 4 ? ? 122.55 118.00 4.55 0.70 N 37 1 "C3'" A DC 4 ? ? "O3'" A DC 4 ? ? P A DT 5 ? ? 127.19 119.70 7.49 1.20 Y 38 1 OP1 A DT 5 ? ? P A DT 5 ? ? OP2 A DT 5 ? ? 105.90 119.60 -13.70 1.50 N 39 1 P A DT 5 ? ? "O5'" A DT 5 ? ? "C5'" A DT 5 ? ? 134.01 120.90 13.11 1.60 N 40 1 "O4'" A DT 5 ? ? "C1'" A DT 5 ? ? "C2'" A DT 5 ? ? 98.21 105.90 -7.69 0.80 N 41 1 N1 A DT 5 ? ? C2 A DT 5 ? ? N3 A DT 5 ? ? 119.79 114.60 5.19 0.60 N 42 1 C2 A DT 5 ? ? N3 A DT 5 ? ? C4 A DT 5 ? ? 121.49 127.20 -5.71 0.60 N 43 1 N3 A DT 5 ? ? C4 A DT 5 ? ? C5 A DT 5 ? ? 118.98 115.20 3.78 0.60 N 44 1 C5 A DT 5 ? ? C4 A DT 5 ? ? O4 A DT 5 ? ? 118.93 124.90 -5.97 0.70 N 45 1 OP1 A DA 6 ? ? P A DA 6 ? ? OP2 A DA 6 ? ? 107.11 119.60 -12.49 1.50 N 46 1 "O4'" A DA 6 ? ? "C1'" A DA 6 ? ? N9 A DA 6 ? ? 110.17 108.30 1.87 0.30 N 47 1 N1 A DA 6 ? ? C2 A DA 6 ? ? N3 A DA 6 ? ? 122.17 129.30 -7.13 0.50 N 48 1 C2 A DA 6 ? ? N3 A DA 6 ? ? C4 A DA 6 ? ? 118.06 110.60 7.46 0.50 N 49 1 N3 A DA 6 ? ? C4 A DA 6 ? ? C5 A DA 6 ? ? 120.34 126.80 -6.46 0.70 N 50 1 C4 A DA 6 ? ? C5 A DA 6 ? ? C6 A DA 6 ? ? 120.91 117.00 3.91 0.50 N 51 1 C4 A DA 6 ? ? C5 A DA 6 ? ? N7 A DA 6 ? ? 106.09 110.70 -4.61 0.50 N 52 1 C5 A DA 6 ? ? N7 A DA 6 ? ? C8 A DA 6 ? ? 109.32 103.90 5.42 0.50 N 53 1 N3 A DA 6 ? ? C4 A DA 6 ? ? N9 A DA 6 ? ? 134.05 127.40 6.65 0.80 N 54 1 OP1 A DG 7 ? ? P A DG 7 ? ? OP2 A DG 7 ? ? 107.99 119.60 -11.61 1.50 N 55 1 "O4'" A DG 7 ? ? "C1'" A DG 7 ? ? N9 A DG 7 ? ? 103.32 108.00 -4.68 0.70 N 56 1 C2 A DG 7 ? ? N3 A DG 7 ? ? C4 A DG 7 ? ? 119.98 111.90 8.08 0.50 N 57 1 N3 A DG 7 ? ? C4 A DG 7 ? ? C5 A DG 7 ? ? 118.19 128.60 -10.41 0.50 N 58 1 C5 A DG 7 ? ? C6 A DG 7 ? ? N1 A DG 7 ? ? 116.00 111.50 4.50 0.50 N 59 1 C4 A DG 7 ? ? C5 A DG 7 ? ? N7 A DG 7 ? ? 102.24 110.80 -8.56 0.40 N 60 1 C5 A DG 7 ? ? N7 A DG 7 ? ? C8 A DG 7 ? ? 108.81 104.30 4.51 0.50 N 61 1 N9 A DG 7 ? ? C4 A DG 7 ? ? C5 A DG 7 ? ? 110.37 105.40 4.97 0.40 N 62 1 N3 A DG 7 ? ? C4 A DG 7 ? ? N9 A DG 7 ? ? 131.43 126.00 5.43 0.60 N 63 1 C6 A DG 7 ? ? C5 A DG 7 ? ? N7 A DG 7 ? ? 136.87 130.40 6.47 0.60 N 64 1 C5 A DG 7 ? ? C6 A DG 7 ? ? O6 A DG 7 ? ? 121.26 128.60 -7.34 0.60 N 65 1 OP1 A DT 8 ? ? P A DT 8 ? ? OP2 A DT 8 ? ? 107.78 119.60 -11.82 1.50 N 66 1 "O4'" A DT 8 ? ? "C4'" A DT 8 ? ? "C3'" A DT 8 ? ? 99.83 104.50 -4.67 0.40 N 67 1 "O4'" A DT 8 ? ? "C1'" A DT 8 ? ? N1 A DT 8 ? ? 112.68 108.30 4.38 0.30 N 68 1 N1 A DT 8 ? ? C2 A DT 8 ? ? N3 A DT 8 ? ? 119.50 114.60 4.90 0.60 N 69 1 C2 A DT 8 ? ? N3 A DT 8 ? ? C4 A DT 8 ? ? 122.49 127.20 -4.71 0.60 N 70 1 "C3'" A DT 8 ? ? "O3'" A DT 8 ? ? P A DC 9 ? ? 128.70 119.70 9.00 1.20 Y 71 1 OP1 A DC 9 ? ? P A DC 9 ? ? OP2 A DC 9 ? ? 106.84 119.60 -12.76 1.50 N 72 1 "O4'" A DC 9 ? ? "C1'" A DC 9 ? ? "C2'" A DC 9 ? ? 98.39 105.90 -7.51 0.80 N 73 1 "O4'" A DC 9 ? ? "C1'" A DC 9 ? ? N1 A DC 9 ? ? 110.90 108.30 2.60 0.30 N 74 1 C6 A DC 9 ? ? N1 A DC 9 ? ? C2 A DC 9 ? ? 117.53 120.30 -2.77 0.40 N 75 1 N3 A DC 9 ? ? C4 A DC 9 ? ? C5 A DC 9 ? ? 116.92 121.90 -4.98 0.40 N 76 1 C4 A DC 9 ? ? C5 A DC 9 ? ? C6 A DC 9 ? ? 120.79 117.40 3.39 0.50 N 77 1 N1 A DC 9 ? ? C2 A DC 9 ? ? O2 A DC 9 ? ? 123.54 118.90 4.64 0.60 N 78 1 N3 A DC 9 ? ? C2 A DC 9 ? ? O2 A DC 9 ? ? 114.91 121.90 -6.99 0.70 N 79 1 N3 A DC 9 ? ? C4 A DC 9 ? ? N4 A DC 9 ? ? 122.45 118.00 4.45 0.70 N 80 1 "C3'" A DC 9 ? ? "O3'" A DC 9 ? ? P A DG 10 ? ? 127.69 119.70 7.99 1.20 Y 81 1 OP1 A DG 10 ? ? P A DG 10 ? ? OP2 A DG 10 ? ? 107.57 119.60 -12.03 1.50 N 82 1 "O4'" A DG 10 ? ? "C4'" A DG 10 ? ? "C3'" A DG 10 ? ? 101.11 104.50 -3.39 0.40 N 83 1 "O4'" A DG 10 ? ? "C1'" A DG 10 ? ? N9 A DG 10 ? ? 111.12 108.30 2.82 0.30 N 84 1 C2 A DG 10 ? ? N3 A DG 10 ? ? C4 A DG 10 ? ? 120.62 111.90 8.72 0.50 N 85 1 N3 A DG 10 ? ? C4 A DG 10 ? ? C5 A DG 10 ? ? 120.09 128.60 -8.51 0.50 N 86 1 C5 A DG 10 ? ? C6 A DG 10 ? ? N1 A DG 10 ? ? 116.19 111.50 4.69 0.50 N 87 1 C4 A DG 10 ? ? C5 A DG 10 ? ? N7 A DG 10 ? ? 101.50 110.80 -9.30 0.40 N 88 1 C5 A DG 10 ? ? N7 A DG 10 ? ? C8 A DG 10 ? ? 108.56 104.30 4.26 0.50 N 89 1 N9 A DG 10 ? ? C4 A DG 10 ? ? C5 A DG 10 ? ? 111.25 105.40 5.85 0.40 N 90 1 C6 A DG 10 ? ? C5 A DG 10 ? ? N7 A DG 10 ? ? 139.91 130.40 9.51 0.60 N 91 1 C5 A DG 10 ? ? C6 A DG 10 ? ? O6 A DG 10 ? ? 121.31 128.60 -7.29 0.60 N 92 1 "O4'" B DC 11 ? ? "C1'" B DC 11 ? ? "C2'" B DC 11 ? ? 100.71 105.90 -5.19 0.80 N 93 1 "O4'" B DC 11 ? ? "C1'" B DC 11 ? ? N1 B DC 11 ? ? 110.42 108.30 2.12 0.30 N 94 1 N3 B DC 11 ? ? C4 B DC 11 ? ? C5 B DC 11 ? ? 117.07 121.90 -4.83 0.40 N 95 1 C4 B DC 11 ? ? C5 B DC 11 ? ? C6 B DC 11 ? ? 120.71 117.40 3.31 0.50 N 96 1 N1 B DC 11 ? ? C2 B DC 11 ? ? O2 B DC 11 ? ? 123.92 118.90 5.02 0.60 N 97 1 N3 B DC 11 ? ? C2 B DC 11 ? ? O2 B DC 11 ? ? 114.99 121.90 -6.91 0.70 N 98 1 OP1 B DG 12 ? ? P B DG 12 ? ? OP2 B DG 12 ? ? 107.93 119.60 -11.67 1.50 N 99 1 C2 B DG 12 ? ? N3 B DG 12 ? ? C4 B DG 12 ? ? 121.13 111.90 9.23 0.50 N 100 1 N3 B DG 12 ? ? C4 B DG 12 ? ? C5 B DG 12 ? ? 119.73 128.60 -8.87 0.50 N 101 1 C5 B DG 12 ? ? C6 B DG 12 ? ? N1 B DG 12 ? ? 117.14 111.50 5.64 0.50 N 102 1 C4 B DG 12 ? ? C5 B DG 12 ? ? N7 B DG 12 ? ? 101.29 110.80 -9.51 0.40 N 103 1 C5 B DG 12 ? ? N7 B DG 12 ? ? C8 B DG 12 ? ? 108.93 104.30 4.63 0.50 N 104 1 N9 B DG 12 ? ? C4 B DG 12 ? ? C5 B DG 12 ? ? 111.50 105.40 6.10 0.40 N 105 1 C6 B DG 12 ? ? C5 B DG 12 ? ? N7 B DG 12 ? ? 140.35 130.40 9.95 0.60 N 106 1 C5 B DG 12 ? ? C6 B DG 12 ? ? O6 B DG 12 ? ? 120.73 128.60 -7.87 0.60 N 107 1 "C3'" B DG 12 ? ? "O3'" B DG 12 ? ? P B DA 13 ? ? 128.82 119.70 9.12 1.20 Y 108 1 OP1 B DA 13 ? ? P B DA 13 ? ? OP2 B DA 13 ? ? 106.31 119.60 -13.29 1.50 N 109 1 "O4'" B DA 13 ? ? "C4'" B DA 13 ? ? "C3'" B DA 13 ? ? 100.73 104.50 -3.77 0.40 N 110 1 N1 B DA 13 ? ? C2 B DA 13 ? ? N3 B DA 13 ? ? 121.45 129.30 -7.85 0.50 N 111 1 C2 B DA 13 ? ? N3 B DA 13 ? ? C4 B DA 13 ? ? 117.67 110.60 7.07 0.50 N 112 1 N3 B DA 13 ? ? C4 B DA 13 ? ? C5 B DA 13 ? ? 120.87 126.80 -5.93 0.70 N 113 1 C4 B DA 13 ? ? C5 B DA 13 ? ? C6 B DA 13 ? ? 120.59 117.00 3.59 0.50 N 114 1 C4 B DA 13 ? ? C5 B DA 13 ? ? N7 B DA 13 ? ? 105.24 110.70 -5.46 0.50 N 115 1 C5 B DA 13 ? ? N7 B DA 13 ? ? C8 B DA 13 ? ? 109.50 103.90 5.60 0.50 N 116 1 N3 B DA 13 ? ? C4 B DA 13 ? ? N9 B DA 13 ? ? 132.27 127.40 4.87 0.80 N 117 1 "C3'" B DA 13 ? ? "O3'" B DA 13 ? ? P B DC 14 ? ? 127.40 119.70 7.70 1.20 Y 118 1 OP1 B DC 14 ? ? P B DC 14 ? ? OP2 B DC 14 ? ? 107.34 119.60 -12.26 1.50 N 119 1 "O4'" B DC 14 ? ? "C4'" B DC 14 ? ? "C3'" B DC 14 ? ? 101.01 104.50 -3.49 0.40 N 120 1 N3 B DC 14 ? ? C4 B DC 14 ? ? C5 B DC 14 ? ? 117.28 121.90 -4.62 0.40 N 121 1 C4 B DC 14 ? ? C5 B DC 14 ? ? C6 B DC 14 ? ? 120.47 117.40 3.07 0.50 N 122 1 N1 B DC 14 ? ? C2 B DC 14 ? ? O2 B DC 14 ? ? 123.37 118.90 4.47 0.60 N 123 1 N3 B DC 14 ? ? C2 B DC 14 ? ? O2 B DC 14 ? ? 115.31 121.90 -6.59 0.70 N 124 1 "C3'" B DC 14 ? ? "O3'" B DC 14 ? ? P B DT 15 ? ? 129.09 119.70 9.39 1.20 Y 125 1 OP1 B DT 15 ? ? P B DT 15 ? ? OP2 B DT 15 ? ? 106.97 119.60 -12.63 1.50 N 126 1 "O4'" B DT 15 ? ? "C1'" B DT 15 ? ? "C2'" B DT 15 ? ? 99.75 105.90 -6.15 0.80 N 127 1 N1 B DT 15 ? ? C2 B DT 15 ? ? N3 B DT 15 ? ? 119.72 114.60 5.12 0.60 N 128 1 C2 B DT 15 ? ? N3 B DT 15 ? ? C4 B DT 15 ? ? 121.46 127.20 -5.74 0.60 N 129 1 N3 B DT 15 ? ? C4 B DT 15 ? ? C5 B DT 15 ? ? 118.91 115.20 3.71 0.60 N 130 1 C5 B DT 15 ? ? C4 B DT 15 ? ? O4 B DT 15 ? ? 118.50 124.90 -6.40 0.70 N 131 1 "C3'" B DT 15 ? ? "O3'" B DT 15 ? ? P B DA 16 ? ? 128.57 119.70 8.87 1.20 Y 132 1 OP1 B DA 16 ? ? P B DA 16 ? ? OP2 B DA 16 ? ? 108.24 119.60 -11.36 1.50 N 133 1 "O4'" B DA 16 ? ? "C4'" B DA 16 ? ? "C3'" B DA 16 ? ? 100.36 104.50 -4.14 0.40 N 134 1 "O4'" B DA 16 ? ? "C1'" B DA 16 ? ? N9 B DA 16 ? ? 112.86 108.30 4.56 0.30 N 135 1 N1 B DA 16 ? ? C2 B DA 16 ? ? N3 B DA 16 ? ? 122.61 129.30 -6.69 0.50 N 136 1 C2 B DA 16 ? ? N3 B DA 16 ? ? C4 B DA 16 ? ? 118.34 110.60 7.74 0.50 N 137 1 N3 B DA 16 ? ? C4 B DA 16 ? ? C5 B DA 16 ? ? 119.28 126.80 -7.52 0.70 N 138 1 C4 B DA 16 ? ? C5 B DA 16 ? ? C6 B DA 16 ? ? 122.02 117.00 5.02 0.50 N 139 1 C4 B DA 16 ? ? C5 B DA 16 ? ? N7 B DA 16 ? ? 106.17 110.70 -4.53 0.50 N 140 1 C5 B DA 16 ? ? N7 B DA 16 ? ? C8 B DA 16 ? ? 109.22 103.90 5.32 0.50 N 141 1 N3 B DA 16 ? ? C4 B DA 16 ? ? N9 B DA 16 ? ? 134.67 127.40 7.27 0.80 N 142 1 N1 B DA 16 ? ? C6 B DA 16 ? ? N6 B DA 16 ? ? 122.32 118.60 3.72 0.60 N 143 1 "C3'" B DA 16 ? ? "O3'" B DA 16 ? ? P B DG 17 ? ? 128.58 119.70 8.88 1.20 Y 144 1 OP1 B DG 17 ? ? P B DG 17 ? ? OP2 B DG 17 ? ? 107.76 119.60 -11.84 1.50 N 145 1 "O4'" B DG 17 ? ? "C1'" B DG 17 ? ? "C2'" B DG 17 ? ? 100.69 105.90 -5.21 0.80 N 146 1 "O4'" B DG 17 ? ? "C1'" B DG 17 ? ? N9 B DG 17 ? ? 102.30 108.00 -5.70 0.70 N 147 1 C2 B DG 17 ? ? N3 B DG 17 ? ? C4 B DG 17 ? ? 120.03 111.90 8.13 0.50 N 148 1 N3 B DG 17 ? ? C4 B DG 17 ? ? C5 B DG 17 ? ? 118.67 128.60 -9.93 0.50 N 149 1 C5 B DG 17 ? ? C6 B DG 17 ? ? N1 B DG 17 ? ? 116.28 111.50 4.78 0.50 N 150 1 C4 B DG 17 ? ? C5 B DG 17 ? ? N7 B DG 17 ? ? 102.40 110.80 -8.40 0.40 N 151 1 C5 B DG 17 ? ? N7 B DG 17 ? ? C8 B DG 17 ? ? 108.61 104.30 4.31 0.50 N 152 1 N9 B DG 17 ? ? C4 B DG 17 ? ? C5 B DG 17 ? ? 110.19 105.40 4.79 0.40 N 153 1 N3 B DG 17 ? ? C4 B DG 17 ? ? N9 B DG 17 ? ? 131.14 126.00 5.14 0.60 N 154 1 C6 B DG 17 ? ? C5 B DG 17 ? ? N7 B DG 17 ? ? 137.29 130.40 6.89 0.60 N 155 1 C5 B DG 17 ? ? C6 B DG 17 ? ? O6 B DG 17 ? ? 120.64 128.60 -7.96 0.60 N 156 1 "C3'" B DG 17 ? ? "O3'" B DG 17 ? ? P B DT 18 ? ? 127.75 119.70 8.05 1.20 Y 157 1 OP1 B DT 18 ? ? P B DT 18 ? ? OP2 B DT 18 ? ? 105.69 119.60 -13.91 1.50 N 158 1 "O4'" B DT 18 ? ? "C4'" B DT 18 ? ? "C3'" B DT 18 ? ? 100.51 104.50 -3.99 0.40 N 159 1 "O4'" B DT 18 ? ? "C1'" B DT 18 ? ? N1 B DT 18 ? ? 113.21 108.30 4.91 0.30 N 160 1 N1 B DT 18 ? ? C2 B DT 18 ? ? N3 B DT 18 ? ? 119.98 114.60 5.38 0.60 N 161 1 C2 B DT 18 ? ? N3 B DT 18 ? ? C4 B DT 18 ? ? 122.01 127.20 -5.19 0.60 N 162 1 N3 B DT 18 ? ? C2 B DT 18 ? ? O2 B DT 18 ? ? 118.28 122.30 -4.02 0.60 N 163 1 C5 B DT 18 ? ? C4 B DT 18 ? ? O4 B DT 18 ? ? 120.13 124.90 -4.77 0.70 N 164 1 "C3'" B DT 18 ? ? "O3'" B DT 18 ? ? P B DC 19 ? ? 128.75 119.70 9.05 1.20 Y 165 1 OP1 B DC 19 ? ? P B DC 19 ? ? OP2 B DC 19 ? ? 106.95 119.60 -12.65 1.50 N 166 1 "O4'" B DC 19 ? ? "C1'" B DC 19 ? ? "C2'" B DC 19 ? ? 98.62 105.90 -7.28 0.80 N 167 1 "O4'" B DC 19 ? ? "C1'" B DC 19 ? ? N1 B DC 19 ? ? 112.47 108.30 4.17 0.30 N 168 1 C6 B DC 19 ? ? N1 B DC 19 ? ? C2 B DC 19 ? ? 117.38 120.30 -2.92 0.40 N 169 1 N3 B DC 19 ? ? C4 B DC 19 ? ? C5 B DC 19 ? ? 116.73 121.90 -5.17 0.40 N 170 1 C4 B DC 19 ? ? C5 B DC 19 ? ? C6 B DC 19 ? ? 120.80 117.40 3.40 0.50 N 171 1 N1 B DC 19 ? ? C2 B DC 19 ? ? O2 B DC 19 ? ? 124.40 118.90 5.50 0.60 N 172 1 N3 B DC 19 ? ? C2 B DC 19 ? ? O2 B DC 19 ? ? 113.90 121.90 -8.00 0.70 N 173 1 "C3'" B DC 19 ? ? "O3'" B DC 19 ? ? P B DG 20 ? ? 135.83 119.70 16.13 1.20 Y 174 1 "O5'" B DG 20 ? ? "C5'" B DG 20 ? ? "C4'" B DG 20 ? ? 104.41 109.40 -4.99 0.80 N 175 1 P B DG 20 ? ? "O5'" B DG 20 ? ? "C5'" B DG 20 ? ? 134.85 120.90 13.95 1.60 N 176 1 C2 B DG 20 ? ? N3 B DG 20 ? ? C4 B DG 20 ? ? 120.92 111.90 9.02 0.50 N 177 1 N3 B DG 20 ? ? C4 B DG 20 ? ? C5 B DG 20 ? ? 120.05 128.60 -8.55 0.50 N 178 1 C5 B DG 20 ? ? C6 B DG 20 ? ? N1 B DG 20 ? ? 116.83 111.50 5.33 0.50 N 179 1 C4 B DG 20 ? ? C5 B DG 20 ? ? N7 B DG 20 ? ? 101.15 110.80 -9.65 0.40 N 180 1 C5 B DG 20 ? ? N7 B DG 20 ? ? C8 B DG 20 ? ? 108.93 104.30 4.63 0.50 N 181 1 N9 B DG 20 ? ? C4 B DG 20 ? ? C5 B DG 20 ? ? 111.70 105.40 6.30 0.40 N 182 1 C6 B DG 20 ? ? C5 B DG 20 ? ? N7 B DG 20 ? ? 140.58 130.40 10.18 0.60 N 183 1 C5 B DG 20 ? ? C6 B DG 20 ? ? O6 B DG 20 ? ? 121.23 128.60 -7.37 0.60 N # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 DA A 6 ? ? 0.094 'SIDE CHAIN' 2 1 DA B 13 ? ? 0.072 'SIDE CHAIN' # _struct_site_keywords.site_id 1 _struct_site_keywords.text 'MINOR GROOVE BINDER' # _pdbx_nmr_ensemble.entry_id 1RMX _pdbx_nmr_ensemble.conformers_calculated_total_number ? _pdbx_nmr_ensemble.conformers_submitted_total_number 1 _pdbx_nmr_ensemble.conformer_selection_criteria ? # _pdbx_nmr_representative.entry_id 1RMX _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'minimized average structure' # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '2.4mM DNA duplex with 2 equivalents of AIK13/20 ligand, 90% H2O, 10% D2O' _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.pressure 1 _pdbx_nmr_exptl_sample_conditions.pH 7.0 _pdbx_nmr_exptl_sample_conditions.ionic_strength '100mM NaCl' _pdbx_nmr_exptl_sample_conditions.pressure_units atm _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.solution_id 1 1 '2D NOESY' 1 2 1 '2D TOCSY' 1 3 1 DQF-COSY 1 # _pdbx_nmr_details.entry_id 1RMX _pdbx_nmr_details.text 'The structure was determined using standard 2D homonuclear techniques' # _pdbx_nmr_refine.entry_id 1RMX _pdbx_nmr_refine.method 'Restrained Molecular Dynamics' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal 'iterative matrix relaxation' SYBYL 6.3 'TRIPOS INC.' 1 collection XwinNMR 3.0 Bruker 2 collection VNMR 6 Varian 3 refinement SYBYL 6.3 'TRIPOS INC.' 4 'data analysis' Sparky 3.105 'Goddard & Kneller' 5 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal AIK C14 C Y N 1 AIK C10 C Y N 2 AIK N9 N N N 3 AIK C8 C N N 4 AIK C6 C Y N 5 AIK C7 C Y N 6 AIK C3 C Y N 7 AIK N2 N N N 8 AIK C1 C N N 9 AIK O1 O N N 10 AIK C4 C Y N 11 AIK N5 N Y N 12 AIK C5 C N N 13 AIK O8 O N N 14 AIK C11 C Y N 15 AIK N12 N Y N 16 AIK C12 C N N 17 AIK C13 C Y N 18 AIK C15 C N N 19 AIK O15 O N N 20 AIK N16 N N N 21 AIK C17 C Y N 22 AIK N21 N Y N 23 AIK C20 C Y N 24 AIK C25 C N N 25 AIK O25 O N N 26 AIK N26 N N N 27 AIK C27 C N N 28 AIK C28 C N N 29 AIK C29 C N N 30 AIK N30 N N N 31 AIK C32 C N N 32 AIK C31 C N N 33 AIK C19 C Y N 34 AIK C22 C N N 35 AIK C23 C N N 36 AIK C24 C N N 37 AIK S18 S Y N 38 AIK H14 H N N 39 AIK H9 H N N 40 AIK H7 H N N 41 AIK H2 H N N 42 AIK H1 H N N 43 AIK H4 H N N 44 AIK H51 H N N 45 AIK H52 H N N 46 AIK H53 H N N 47 AIK H11 H N N 48 AIK H121 H N N 49 AIK H122 H N N 50 AIK H123 H N N 51 AIK H16 H N N 52 AIK H26 H N N 53 AIK H271 H N N 54 AIK H272 H N N 55 AIK H281 H N N 56 AIK H282 H N N 57 AIK H291 H N N 58 AIK H292 H N N 59 AIK H321 H N N 60 AIK H322 H N N 61 AIK H323 H N N 62 AIK H311 H N N 63 AIK H312 H N N 64 AIK H313 H N N 65 AIK H22 H N N 66 AIK H231 H N N 67 AIK H232 H N N 68 AIK H233 H N N 69 AIK H241 H N N 70 AIK H242 H N N 71 AIK H243 H N N 72 DA OP3 O N N 73 DA P P N N 74 DA OP1 O N N 75 DA OP2 O N N 76 DA "O5'" O N N 77 DA "C5'" C N N 78 DA "C4'" C N R 79 DA "O4'" O N N 80 DA "C3'" C N S 81 DA "O3'" O N N 82 DA "C2'" C N N 83 DA "C1'" C N R 84 DA N9 N Y N 85 DA C8 C Y N 86 DA N7 N Y N 87 DA C5 C Y N 88 DA C6 C Y N 89 DA N6 N N N 90 DA N1 N Y N 91 DA C2 C Y N 92 DA N3 N Y N 93 DA C4 C Y N 94 DA HOP3 H N N 95 DA HOP2 H N N 96 DA "H5'" H N N 97 DA "H5''" H N N 98 DA "H4'" H N N 99 DA "H3'" H N N 100 DA "HO3'" H N N 101 DA "H2'" H N N 102 DA "H2''" H N N 103 DA "H1'" H N N 104 DA H8 H N N 105 DA H61 H N N 106 DA H62 H N N 107 DA H2 H N N 108 DC OP3 O N N 109 DC P P N N 110 DC OP1 O N N 111 DC OP2 O N N 112 DC "O5'" O N N 113 DC "C5'" C N N 114 DC "C4'" C N R 115 DC "O4'" O N N 116 DC "C3'" C N S 117 DC "O3'" O N N 118 DC "C2'" C N N 119 DC "C1'" C N R 120 DC N1 N N N 121 DC C2 C N N 122 DC O2 O N N 123 DC N3 N N N 124 DC C4 C N N 125 DC N4 N N N 126 DC C5 C N N 127 DC C6 C N N 128 DC HOP3 H N N 129 DC HOP2 H N N 130 DC "H5'" H N N 131 DC "H5''" H N N 132 DC "H4'" H N N 133 DC "H3'" H N N 134 DC "HO3'" H N N 135 DC "H2'" H N N 136 DC "H2''" H N N 137 DC "H1'" H N N 138 DC H41 H N N 139 DC H42 H N N 140 DC H5 H N N 141 DC H6 H N N 142 DG OP3 O N N 143 DG P P N N 144 DG OP1 O N N 145 DG OP2 O N N 146 DG "O5'" O N N 147 DG "C5'" C N N 148 DG "C4'" C N R 149 DG "O4'" O N N 150 DG "C3'" C N S 151 DG "O3'" O N N 152 DG "C2'" C N N 153 DG "C1'" C N R 154 DG N9 N Y N 155 DG C8 C Y N 156 DG N7 N Y N 157 DG C5 C Y N 158 DG C6 C N N 159 DG O6 O N N 160 DG N1 N N N 161 DG C2 C N N 162 DG N2 N N N 163 DG N3 N N N 164 DG C4 C Y N 165 DG HOP3 H N N 166 DG HOP2 H N N 167 DG "H5'" H N N 168 DG "H5''" H N N 169 DG "H4'" H N N 170 DG "H3'" H N N 171 DG "HO3'" H N N 172 DG "H2'" H N N 173 DG "H2''" H N N 174 DG "H1'" H N N 175 DG H8 H N N 176 DG H1 H N N 177 DG H21 H N N 178 DG H22 H N N 179 DT OP3 O N N 180 DT P P N N 181 DT OP1 O N N 182 DT OP2 O N N 183 DT "O5'" O N N 184 DT "C5'" C N N 185 DT "C4'" C N R 186 DT "O4'" O N N 187 DT "C3'" C N S 188 DT "O3'" O N N 189 DT "C2'" C N N 190 DT "C1'" C N R 191 DT N1 N N N 192 DT C2 C N N 193 DT O2 O N N 194 DT N3 N N N 195 DT C4 C N N 196 DT O4 O N N 197 DT C5 C N N 198 DT C7 C N N 199 DT C6 C N N 200 DT HOP3 H N N 201 DT HOP2 H N N 202 DT "H5'" H N N 203 DT "H5''" H N N 204 DT "H4'" H N N 205 DT "H3'" H N N 206 DT "HO3'" H N N 207 DT "H2'" H N N 208 DT "H2''" H N N 209 DT "H1'" H N N 210 DT H3 H N N 211 DT H71 H N N 212 DT H72 H N N 213 DT H73 H N N 214 DT H6 H N N 215 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal AIK C14 C10 sing Y N 1 AIK C14 C13 doub Y N 2 AIK C14 H14 sing N N 3 AIK C10 N9 sing N N 4 AIK C10 C11 doub Y N 5 AIK N9 C8 sing N N 6 AIK N9 H9 sing N N 7 AIK C8 C6 sing N N 8 AIK C8 O8 doub N N 9 AIK C6 C7 doub Y N 10 AIK C6 N5 sing Y N 11 AIK C7 C3 sing Y N 12 AIK C7 H7 sing N N 13 AIK C3 N2 sing N N 14 AIK C3 C4 doub Y N 15 AIK N2 C1 sing N N 16 AIK N2 H2 sing N N 17 AIK C1 O1 doub N N 18 AIK C1 H1 sing N N 19 AIK C4 N5 sing Y N 20 AIK C4 H4 sing N N 21 AIK N5 C5 sing N N 22 AIK C5 H51 sing N N 23 AIK C5 H52 sing N N 24 AIK C5 H53 sing N N 25 AIK C11 N12 sing Y N 26 AIK C11 H11 sing N N 27 AIK N12 C12 sing N N 28 AIK N12 C13 sing Y N 29 AIK C12 H121 sing N N 30 AIK C12 H122 sing N N 31 AIK C12 H123 sing N N 32 AIK C13 C15 sing N N 33 AIK C15 O15 doub N N 34 AIK C15 N16 sing N N 35 AIK N16 C17 sing N N 36 AIK N16 H16 sing N N 37 AIK C17 N21 doub Y N 38 AIK C17 S18 sing Y N 39 AIK N21 C20 sing Y N 40 AIK C20 C25 sing N N 41 AIK C20 C19 doub Y N 42 AIK C25 O25 doub N N 43 AIK C25 N26 sing N N 44 AIK N26 C27 sing N N 45 AIK N26 H26 sing N N 46 AIK C27 C28 sing N N 47 AIK C27 H271 sing N N 48 AIK C27 H272 sing N N 49 AIK C28 C29 sing N N 50 AIK C28 H281 sing N N 51 AIK C28 H282 sing N N 52 AIK C29 N30 sing N N 53 AIK C29 H291 sing N N 54 AIK C29 H292 sing N N 55 AIK N30 C32 sing N N 56 AIK N30 C31 sing N N 57 AIK C32 H321 sing N N 58 AIK C32 H322 sing N N 59 AIK C32 H323 sing N N 60 AIK C31 H311 sing N N 61 AIK C31 H312 sing N N 62 AIK C31 H313 sing N N 63 AIK C19 C22 sing N N 64 AIK C19 S18 sing Y N 65 AIK C22 C23 sing N N 66 AIK C22 C24 sing N N 67 AIK C22 H22 sing N N 68 AIK C23 H231 sing N N 69 AIK C23 H232 sing N N 70 AIK C23 H233 sing N N 71 AIK C24 H241 sing N N 72 AIK C24 H242 sing N N 73 AIK C24 H243 sing N N 74 DA OP3 P sing N N 75 DA OP3 HOP3 sing N N 76 DA P OP1 doub N N 77 DA P OP2 sing N N 78 DA P "O5'" sing N N 79 DA OP2 HOP2 sing N N 80 DA "O5'" "C5'" sing N N 81 DA "C5'" "C4'" sing N N 82 DA "C5'" "H5'" sing N N 83 DA "C5'" "H5''" sing N N 84 DA "C4'" "O4'" sing N N 85 DA "C4'" "C3'" sing N N 86 DA "C4'" "H4'" sing N N 87 DA "O4'" "C1'" sing N N 88 DA "C3'" "O3'" sing N N 89 DA "C3'" "C2'" sing N N 90 DA "C3'" "H3'" sing N N 91 DA "O3'" "HO3'" sing N N 92 DA "C2'" "C1'" sing N N 93 DA "C2'" "H2'" sing N N 94 DA "C2'" "H2''" sing N N 95 DA "C1'" N9 sing N N 96 DA "C1'" "H1'" sing N N 97 DA N9 C8 sing Y N 98 DA N9 C4 sing Y N 99 DA C8 N7 doub Y N 100 DA C8 H8 sing N N 101 DA N7 C5 sing Y N 102 DA C5 C6 sing Y N 103 DA C5 C4 doub Y N 104 DA C6 N6 sing N N 105 DA C6 N1 doub Y N 106 DA N6 H61 sing N N 107 DA N6 H62 sing N N 108 DA N1 C2 sing Y N 109 DA C2 N3 doub Y N 110 DA C2 H2 sing N N 111 DA N3 C4 sing Y N 112 DC OP3 P sing N N 113 DC OP3 HOP3 sing N N 114 DC P OP1 doub N N 115 DC P OP2 sing N N 116 DC P "O5'" sing N N 117 DC OP2 HOP2 sing N N 118 DC "O5'" "C5'" sing N N 119 DC "C5'" "C4'" sing N N 120 DC "C5'" "H5'" sing N N 121 DC "C5'" "H5''" sing N N 122 DC "C4'" "O4'" sing N N 123 DC "C4'" "C3'" sing N N 124 DC "C4'" "H4'" sing N N 125 DC "O4'" "C1'" sing N N 126 DC "C3'" "O3'" sing N N 127 DC "C3'" "C2'" sing N N 128 DC "C3'" "H3'" sing N N 129 DC "O3'" "HO3'" sing N N 130 DC "C2'" "C1'" sing N N 131 DC "C2'" "H2'" sing N N 132 DC "C2'" "H2''" sing N N 133 DC "C1'" N1 sing N N 134 DC "C1'" "H1'" sing N N 135 DC N1 C2 sing N N 136 DC N1 C6 sing N N 137 DC C2 O2 doub N N 138 DC C2 N3 sing N N 139 DC N3 C4 doub N N 140 DC C4 N4 sing N N 141 DC C4 C5 sing N N 142 DC N4 H41 sing N N 143 DC N4 H42 sing N N 144 DC C5 C6 doub N N 145 DC C5 H5 sing N N 146 DC C6 H6 sing N N 147 DG OP3 P sing N N 148 DG OP3 HOP3 sing N N 149 DG P OP1 doub N N 150 DG P OP2 sing N N 151 DG P "O5'" sing N N 152 DG OP2 HOP2 sing N N 153 DG "O5'" "C5'" sing N N 154 DG "C5'" "C4'" sing N N 155 DG "C5'" "H5'" sing N N 156 DG "C5'" "H5''" sing N N 157 DG "C4'" "O4'" sing N N 158 DG "C4'" "C3'" sing N N 159 DG "C4'" "H4'" sing N N 160 DG "O4'" "C1'" sing N N 161 DG "C3'" "O3'" sing N N 162 DG "C3'" "C2'" sing N N 163 DG "C3'" "H3'" sing N N 164 DG "O3'" "HO3'" sing N N 165 DG "C2'" "C1'" sing N N 166 DG "C2'" "H2'" sing N N 167 DG "C2'" "H2''" sing N N 168 DG "C1'" N9 sing N N 169 DG "C1'" "H1'" sing N N 170 DG N9 C8 sing Y N 171 DG N9 C4 sing Y N 172 DG C8 N7 doub Y N 173 DG C8 H8 sing N N 174 DG N7 C5 sing Y N 175 DG C5 C6 sing N N 176 DG C5 C4 doub Y N 177 DG C6 O6 doub N N 178 DG C6 N1 sing N N 179 DG N1 C2 sing N N 180 DG N1 H1 sing N N 181 DG C2 N2 sing N N 182 DG C2 N3 doub N N 183 DG N2 H21 sing N N 184 DG N2 H22 sing N N 185 DG N3 C4 sing N N 186 DT OP3 P sing N N 187 DT OP3 HOP3 sing N N 188 DT P OP1 doub N N 189 DT P OP2 sing N N 190 DT P "O5'" sing N N 191 DT OP2 HOP2 sing N N 192 DT "O5'" "C5'" sing N N 193 DT "C5'" "C4'" sing N N 194 DT "C5'" "H5'" sing N N 195 DT "C5'" "H5''" sing N N 196 DT "C4'" "O4'" sing N N 197 DT "C4'" "C3'" sing N N 198 DT "C4'" "H4'" sing N N 199 DT "O4'" "C1'" sing N N 200 DT "C3'" "O3'" sing N N 201 DT "C3'" "C2'" sing N N 202 DT "C3'" "H3'" sing N N 203 DT "O3'" "HO3'" sing N N 204 DT "C2'" "C1'" sing N N 205 DT "C2'" "H2'" sing N N 206 DT "C2'" "H2''" sing N N 207 DT "C1'" N1 sing N N 208 DT "C1'" "H1'" sing N N 209 DT N1 C2 sing N N 210 DT N1 C6 sing N N 211 DT C2 O2 doub N N 212 DT C2 N3 sing N N 213 DT N3 C4 sing N N 214 DT N3 H3 sing N N 215 DT C4 O4 doub N N 216 DT C4 C5 sing N N 217 DT C5 C7 sing N N 218 DT C5 C6 doub N N 219 DT C7 H71 sing N N 220 DT C7 H72 sing N N 221 DT C7 H73 sing N N 222 DT C6 H6 sing N N 223 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1RMX 'double helix' 1RMX 'b-form double helix' 1RMX 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 1 1_555 B DG 10 1_555 0.147 -0.313 0.253 -0.165 -11.301 0.085 1 A_DC1:DG20_B A 1 ? B 20 ? 19 1 1 A DG 2 1_555 B DC 9 1_555 -0.307 -0.291 -0.386 -26.292 -20.196 1.951 2 A_DG2:DC19_B A 2 ? B 19 ? 19 1 1 A DA 3 1_555 B DT 8 1_555 0.146 -0.223 0.043 -15.196 2.375 -6.408 3 A_DA3:DT18_B A 3 ? B 18 ? 20 1 1 A DC 4 1_555 B DG 7 1_555 0.219 -0.357 0.395 -6.275 -0.891 -2.230 4 A_DC4:DG17_B A 4 ? B 17 ? 19 1 1 A DT 5 1_555 B DA 6 1_555 -0.206 -0.264 -0.591 7.527 -10.794 -8.877 5 A_DT5:DA16_B A 5 ? B 16 ? 20 1 1 A DA 6 1_555 B DT 5 1_555 0.262 -0.246 -0.730 -17.513 -21.275 -7.700 6 A_DA6:DT15_B A 6 ? B 15 ? 20 1 1 A DG 7 1_555 B DC 4 1_555 -0.253 -0.330 0.281 7.598 -4.465 -1.780 7 A_DG7:DC14_B A 7 ? B 14 ? 19 1 1 A DT 8 1_555 B DA 3 1_555 0.061 -0.215 0.062 15.349 -5.023 5.128 8 A_DT8:DA13_B A 8 ? B 13 ? 20 1 1 A DC 9 1_555 B DG 2 1_555 0.155 -0.263 -0.289 27.054 -8.597 -0.872 9 A_DC9:DG12_B A 9 ? B 12 ? 19 1 1 A DG 10 1_555 B DC 1 1_555 -0.202 -0.387 0.300 11.460 -20.508 0.290 10 A_DG10:DC11_B A 10 ? B 11 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 1 1_555 B DG 10 1_555 A DG 2 1_555 B DC 9 1_555 1.146 -0.288 3.324 14.454 11.264 43.156 -1.366 -0.157 3.355 14.556 -18.679 46.714 1 AA_DC1DG2:DC19DG20_BB A 1 ? B 20 ? A 2 ? B 19 ? 1 A DG 2 1_555 B DC 9 1_555 A DA 3 1_555 B DT 8 1_555 -0.075 -0.681 2.876 -1.554 16.954 24.131 -4.311 -0.124 1.982 35.454 3.251 29.459 2 AA_DG2DA3:DT18DC19_BB A 2 ? B 19 ? A 3 ? B 18 ? 1 A DA 3 1_555 B DT 8 1_555 A DC 4 1_555 B DG 7 1_555 -0.656 -0.708 2.765 -2.136 -2.653 27.297 -0.928 0.927 2.862 -5.594 4.504 27.505 3 AA_DA3DC4:DG17DT18_BB A 3 ? B 18 ? A 4 ? B 17 ? 1 A DC 4 1_555 B DG 7 1_555 A DT 5 1_555 B DA 6 1_555 0.148 -0.206 2.548 11.017 8.277 27.853 -1.631 1.381 2.291 16.013 -21.314 31.014 4 AA_DC4DT5:DA16DG17_BB A 4 ? B 17 ? A 5 ? B 16 ? 1 A DT 5 1_555 B DA 6 1_555 A DA 6 1_555 B DT 5 1_555 0.553 1.827 3.538 2.780 9.346 48.093 1.399 -0.427 3.832 11.332 -3.371 49.014 5 AA_DT5DA6:DT15DA16_BB A 5 ? B 16 ? A 6 ? B 15 ? 1 A DA 6 1_555 B DT 5 1_555 A DG 7 1_555 B DC 4 1_555 0.125 0.726 2.250 -8.648 4.012 30.689 0.810 -1.310 2.209 7.361 15.866 32.101 6 AA_DA6DG7:DC14DT15_BB A 6 ? B 15 ? A 7 ? B 14 ? 1 A DG 7 1_555 B DC 4 1_555 A DT 8 1_555 B DA 3 1_555 1.155 -0.609 2.688 2.186 3.163 26.352 -2.006 -2.036 2.683 6.892 -4.763 26.626 7 AA_DG7DT8:DA13DC14_BB A 7 ? B 14 ? A 8 ? B 13 ? 1 A DT 8 1_555 B DA 3 1_555 A DC 9 1_555 B DG 2 1_555 -0.342 -0.329 2.842 5.833 9.859 27.523 -2.381 1.695 2.459 19.678 -11.642 29.769 8 AA_DT8DC9:DG12DA13_BB A 8 ? B 13 ? A 9 ? B 12 ? 1 A DC 9 1_555 B DG 2 1_555 A DG 10 1_555 B DC 1 1_555 -0.331 -0.784 3.151 -8.785 11.226 32.662 -2.826 -0.664 2.740 18.881 14.775 35.560 9 AA_DC9DG10:DC11DG12_BB A 9 ? B 12 ? A 10 ? B 11 ? # loop_ _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.type 1 INOVA Varian 800 ? 2 INOVA Varian 600 ? 3 AVANCE Bruker 600 ? 4 AMX Bruker 400 ? # _atom_sites.entry_id 1RMX _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O P S # loop_