data_1RRR # _entry.id 1RRR # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.355 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1RRR pdb_00001rrr 10.2210/pdb1rrr/pdb WWPDB D_1000176193 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1RRR _pdbx_database_status.recvd_initial_deposition_date 1997-10-21 _pdbx_database_status.deposit_site ? _pdbx_database_status.process_site BNL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Gyi, J.I.' 1 'Lane, A.N.' 2 'Conn, G.L.' 3 'Brown, T.' 4 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary ;Solution structures of DNA.RNA hybrids with purine-rich and pyrimidine-rich strands: comparison with the homologous DNA and RNA duplexes. ; Biochemistry 37 73 ? 1998 BICHAW US 0006-2960 0033 ? 9425027 10.1021/bi9719713 1 ;Comparison of the Thermodynamic Stabilities and Solution Conformations of DNA.RNA Hybrids Containing Purine-Rich and Pyrimidine-Rich Strands with DNA and RNA Duplexes ; Biochemistry 35 12538 ? 1996 BICHAW US 0006-2960 0033 ? ? ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Gyi, J.I.' 1 ? primary 'Lane, A.N.' 2 ? primary 'Conn, G.L.' 3 ? primary 'Brown, T.' 4 ? 1 'Gyi, J.I.' 5 ? 1 'Conn, G.L.' 6 ? 1 'Lane, A.N.' 7 ? 1 'Brown, T.' 8 ? # _cell.entry_id 1RRR _cell.length_a 1.000 _cell.length_b 1.000 _cell.length_c 1.000 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1RRR _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;RNA (5'-R(*GP*AP*AP*GP*AP*GP*AP*AP*GP*C)-3') ; 3287.076 1 ? ? ? ? 2 polymer syn ;RNA (5'-R(*GP*CP*UP*UP*CP*UP*CP*UP*UP*C)-3') ; 3051.804 1 ? ? ? ? # loop_ _entity_name_com.entity_id _entity_name_com.name 1 RR10.RY10 2 RR10.RY10 # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polyribonucleotide no no GAAGAGAAGC GAAGAGAAGC A ? 2 polyribonucleotide no no GCUUCUCUUC GCUUCUCUUC B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 A n 1 3 A n 1 4 G n 1 5 A n 1 6 G n 1 7 A n 1 8 A n 1 9 G n 1 10 C n 2 1 G n 2 2 C n 2 3 U n 2 4 U n 2 5 C n 2 6 U n 2 7 C n 2 8 U n 2 9 U n 2 10 C n # loop_ _struct_ref.id _struct_ref.entity_id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 1 PDB 1RRR 1RRR ? ? ? 2 2 PDB 1RRR 1RRR ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1RRR A 1 ? 10 ? 1RRR 1 ? 10 ? 1 10 2 2 1RRR B 1 ? 10 ? 1RRR 1 ? 10 ? 1 10 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.solution_id 1 1 NOESY 1 2 1 COSY 1 # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 303 _pdbx_nmr_exptl_sample_conditions.pressure ? _pdbx_nmr_exptl_sample_conditions.pH 7.0 _pdbx_nmr_exptl_sample_conditions.ionic_strength ? _pdbx_nmr_exptl_sample_conditions.pressure_units . _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.field_strength 1 UNITY Varian 500 2 UNITYPLUS Varian 600 # _pdbx_nmr_refine.entry_id 1RRR _pdbx_nmr_refine.method 'simulated annealing' _pdbx_nmr_refine.details ;DISTANCE CONSTRAINTS FOR GLYCOSIDIC TORSION ANGLES, RIBOSE PSEUDOROTATIONAL PHASE ANGLES AND AMPLITUDES CALCULATED FROM NOE BUILD-UP CURVES AND COUPLING CONSTANTS BY A LEAST SQUARES/GRID-SEARCH METHOD IMPLEMENTED IN NUCFIT AND PFIT (A.N. LANE, NIMR, UK). INTERNUCLEOTIDE DISTANCE CONSTRAINTS CALCULATED FROM NOE BUILD-UP CURVES. STRUCTURES CALCULATED BY SIMULATED ANNEALING/RMD PROTOCOL WITHIN DISCOVER 95.0 USING AN AMBER FORCEFIELD AND A DISTANCE DEPENDENT DIELECTRIC CONSTANT. ; _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.entry_id 1RRR _pdbx_nmr_ensemble.conformers_calculated_total_number 32 _pdbx_nmr_ensemble.conformers_submitted_total_number 10 _pdbx_nmr_ensemble.conformer_selection_criteria 'LOWEST POTENTIAL ENERGY AND MINIMAL VIOLATIONS AND ACCEPTABLE STEREOCHEMISTRY' # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal refinement Discover 95.0 'MOLECULAR SIMULATIONS INC.' 1 'structure solution' Felix 95.0 ? 2 'structure solution' NUCFIT ? ? 3 'structure solution' pfit ? ? 4 'structure solution' 'DISCOVER 95.0 (INSIGHTII)' '(INSIGHTII)' ? 5 # _exptl.entry_id 1RRR _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _struct.entry_id 1RRR _struct.title 'RNA DUPLEX CONTAINING A PURINE-RICH STRAND, NMR, 10 STRUCTURES' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1RRR _struct_keywords.pdbx_keywords RNA _struct_keywords.text 'RNA DUPLEX, PURINE/PYRIMIDINE-RICH STRANDS, A-FORM, RNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_biol.id 1 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A G 1 N1 ? ? ? 1_555 B C 10 N3 ? ? A G 1 B C 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A G 1 N2 ? ? ? 1_555 B C 10 O2 ? ? A G 1 B C 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 1 O6 ? ? ? 1_555 B C 10 N4 ? ? A G 1 B C 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A A 2 N1 ? ? ? 1_555 B U 9 N3 ? ? A A 2 B U 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A A 2 N6 ? ? ? 1_555 B U 9 O4 ? ? A A 2 B U 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A A 3 N1 ? ? ? 1_555 B U 8 N3 ? ? A A 3 B U 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A A 3 N6 ? ? ? 1_555 B U 8 O4 ? ? A A 3 B U 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A G 4 N1 ? ? ? 1_555 B C 7 N3 ? ? A G 4 B C 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A G 4 N2 ? ? ? 1_555 B C 7 O2 ? ? A G 4 B C 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A G 4 O6 ? ? ? 1_555 B C 7 N4 ? ? A G 4 B C 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A A 5 N1 ? ? ? 1_555 B U 6 N3 ? ? A A 5 B U 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A A 5 N6 ? ? ? 1_555 B U 6 O4 ? ? A A 5 B U 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A G 6 N1 ? ? ? 1_555 B C 5 N3 ? ? A G 6 B C 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A G 6 N2 ? ? ? 1_555 B C 5 O2 ? ? A G 6 B C 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A G 6 O6 ? ? ? 1_555 B C 5 N4 ? ? A G 6 B C 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A A 7 N1 ? ? ? 1_555 B U 4 N3 ? ? A A 7 B U 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A A 7 N6 ? ? ? 1_555 B U 4 O4 ? ? A A 7 B U 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A A 8 N1 ? ? ? 1_555 B U 3 N3 ? ? A A 8 B U 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A A 8 N6 ? ? ? 1_555 B U 3 O4 ? ? A A 8 B U 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A G 9 N1 ? ? ? 1_555 B C 2 N3 ? ? A G 9 B C 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A G 9 N2 ? ? ? 1_555 B C 2 O2 ? ? A G 9 B C 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A G 9 O6 ? ? ? 1_555 B C 2 N4 ? ? A G 9 B C 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A C 10 N3 ? ? ? 1_555 B G 1 N1 ? ? A C 10 B G 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A C 10 N4 ? ? ? 1_555 B G 1 O6 ? ? A C 10 B G 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A C 10 O2 ? ? ? 1_555 B G 1 N2 ? ? A C 10 B G 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # _database_PDB_matrix.entry_id 1RRR _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1RRR _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 1 1 G G A . n A 1 2 A 2 2 2 A A A . n A 1 3 A 3 3 3 A A A . n A 1 4 G 4 4 4 G G A . n A 1 5 A 5 5 5 A A A . n A 1 6 G 6 6 6 G G A . n A 1 7 A 7 7 7 A A A . n A 1 8 A 8 8 8 A A A . n A 1 9 G 9 9 9 G G A . n A 1 10 C 10 10 10 C C A . n B 2 1 G 1 1 1 G G B . n B 2 2 C 2 2 2 C C B . n B 2 3 U 3 3 3 U U B . n B 2 4 U 4 4 4 U U B . n B 2 5 C 5 5 5 C C B . n B 2 6 U 6 6 6 U U B . n B 2 7 C 7 7 7 C C B . n B 2 8 U 8 8 8 U U B . n B 2 9 U 9 9 9 U U B . n B 2 10 C 10 10 10 C C B . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1998-04-22 2 'Structure model' 1 1 2008-03-24 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-03-02 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' Other # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_database_status 3 4 'Structure model' pdbx_nmr_software 4 4 'Structure model' pdbx_struct_assembly 5 4 'Structure model' pdbx_struct_oper_list # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_database_status.process_site' 4 4 'Structure model' '_pdbx_nmr_software.name' # _software.name AMBER _software.classification refinement _software.version . _software.citation_id ? _software.pdbx_ordinal 1 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" B U 3 ? ? "C1'" B U 3 ? ? N1 B U 3 ? ? 112.97 108.50 4.47 0.70 N 2 1 "O4'" B U 4 ? ? "C1'" B U 4 ? ? N1 B U 4 ? ? 113.50 108.50 5.00 0.70 N 3 1 "O4'" B C 7 ? ? "C1'" B C 7 ? ? N1 B C 7 ? ? 113.01 108.50 4.51 0.70 N 4 2 "O4'" A A 3 ? ? "C1'" A A 3 ? ? N9 A A 3 ? ? 113.36 108.50 4.86 0.70 N 5 3 "O4'" B C 7 ? ? "C1'" B C 7 ? ? N1 B C 7 ? ? 112.84 108.50 4.34 0.70 N 6 3 "O4'" B U 9 ? ? "C1'" B U 9 ? ? N1 B U 9 ? ? 112.83 108.50 4.33 0.70 N 7 4 "O4'" A A 2 ? ? "C1'" A A 2 ? ? N9 A A 2 ? ? 112.71 108.50 4.21 0.70 N 8 4 "O4'" A A 3 ? ? "C1'" A A 3 ? ? N9 A A 3 ? ? 113.10 108.50 4.60 0.70 N 9 4 "O4'" B U 4 ? ? "C1'" B U 4 ? ? N1 B U 4 ? ? 113.26 108.50 4.76 0.70 N 10 4 "O4'" B C 5 ? ? "C1'" B C 5 ? ? N1 B C 5 ? ? 112.76 108.50 4.26 0.70 N 11 5 "O4'" B C 5 ? ? "C1'" B C 5 ? ? N1 B C 5 ? ? 114.44 108.50 5.94 0.70 N 12 6 "O4'" A A 3 ? ? "C1'" A A 3 ? ? N9 A A 3 ? ? 113.45 108.50 4.95 0.70 N 13 6 "O4'" B U 3 ? ? "C1'" B U 3 ? ? N1 B U 3 ? ? 112.84 108.50 4.34 0.70 N 14 6 "O4'" B U 4 ? ? "C1'" B U 4 ? ? N1 B U 4 ? ? 112.85 108.50 4.35 0.70 N 15 7 "O4'" B C 2 ? ? "C1'" B C 2 ? ? N1 B C 2 ? ? 113.04 108.50 4.54 0.70 N 16 8 "O4'" B U 3 ? ? "C1'" B U 3 ? ? N1 B U 3 ? ? 113.04 108.50 4.54 0.70 N 17 8 "O4'" B U 6 ? ? "C1'" B U 6 ? ? N1 B U 6 ? ? 112.79 108.50 4.29 0.70 N 18 8 "O4'" B C 7 ? ? "C1'" B C 7 ? ? N1 B C 7 ? ? 112.89 108.50 4.39 0.70 N 19 8 "O4'" B U 8 ? ? "C1'" B U 8 ? ? N1 B U 8 ? ? 112.87 108.50 4.37 0.70 N 20 8 "O4'" B U 9 ? ? "C1'" B U 9 ? ? N1 B U 9 ? ? 112.81 108.50 4.31 0.70 N 21 9 "O4'" A G 6 ? ? "C1'" A G 6 ? ? N9 A G 6 ? ? 113.51 108.50 5.01 0.70 N 22 9 "O4'" B U 9 ? ? "C1'" B U 9 ? ? N1 B U 9 ? ? 112.84 108.50 4.34 0.70 N 23 10 "O4'" B C 2 ? ? "C1'" B C 2 ? ? N1 B C 2 ? ? 113.11 108.50 4.61 0.70 N 24 10 "O4'" B U 3 ? ? "C1'" B U 3 ? ? N1 B U 3 ? ? 113.35 108.50 4.85 0.70 N 25 10 "O4'" B U 4 ? ? "C1'" B U 4 ? ? N1 B U 4 ? ? 113.51 108.50 5.01 0.70 N 26 10 "O4'" B C 5 ? ? "C1'" B C 5 ? ? N1 B C 5 ? ? 113.28 108.50 4.78 0.70 N 27 10 "O4'" B U 6 ? ? "C1'" B U 6 ? ? N1 B U 6 ? ? 112.77 108.50 4.27 0.70 N # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 A A 2 ? ? 0.059 'SIDE CHAIN' 2 1 A A 7 ? ? 0.060 'SIDE CHAIN' 3 2 A A 7 ? ? 0.071 'SIDE CHAIN' 4 2 G A 9 ? ? 0.065 'SIDE CHAIN' 5 2 C B 7 ? ? 0.071 'SIDE CHAIN' 6 3 G A 6 ? ? 0.071 'SIDE CHAIN' 7 3 A A 7 ? ? 0.079 'SIDE CHAIN' 8 3 U B 8 ? ? 0.064 'SIDE CHAIN' 9 4 A A 7 ? ? 0.068 'SIDE CHAIN' 10 4 U B 6 ? ? 0.061 'SIDE CHAIN' 11 4 C B 7 ? ? 0.073 'SIDE CHAIN' 12 5 A A 2 ? ? 0.052 'SIDE CHAIN' 13 5 U B 8 ? ? 0.066 'SIDE CHAIN' 14 6 G A 6 ? ? 0.059 'SIDE CHAIN' 15 6 A A 7 ? ? 0.075 'SIDE CHAIN' 16 6 U B 6 ? ? 0.073 'SIDE CHAIN' 17 6 C B 7 ? ? 0.060 'SIDE CHAIN' 18 7 A A 7 ? ? 0.068 'SIDE CHAIN' 19 7 G A 9 ? ? 0.076 'SIDE CHAIN' 20 7 U B 6 ? ? 0.074 'SIDE CHAIN' 21 7 C B 7 ? ? 0.079 'SIDE CHAIN' 22 8 A A 2 ? ? 0.055 'SIDE CHAIN' 23 8 A A 7 ? ? 0.071 'SIDE CHAIN' 24 9 A A 7 ? ? 0.061 'SIDE CHAIN' 25 9 G A 9 ? ? 0.063 'SIDE CHAIN' 26 9 U B 8 ? ? 0.065 'SIDE CHAIN' 27 10 U B 6 ? ? 0.072 'SIDE CHAIN' 28 10 U B 9 ? ? 0.067 'SIDE CHAIN' # _ndb_struct_conf_na.entry_id 1RRR _ndb_struct_conf_na.feature 'a-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 1 1_555 B C 10 1_555 -0.422 -0.119 -0.164 -2.221 -15.764 0.390 1 A_G1:C10_B A 1 ? B 10 ? 19 1 1 A A 2 1_555 B U 9 1_555 0.020 -0.006 0.118 -5.352 -7.899 -1.318 2 A_A2:U9_B A 2 ? B 9 ? 20 1 1 A A 3 1_555 B U 8 1_555 0.056 0.016 0.094 0.033 -9.294 -2.552 3 A_A3:U8_B A 3 ? B 8 ? 20 1 1 A G 4 1_555 B C 7 1_555 -0.459 -0.135 0.030 -4.008 -14.850 -0.859 4 A_G4:C7_B A 4 ? B 7 ? 19 1 1 A A 5 1_555 B U 6 1_555 0.057 -0.003 0.126 -5.045 -12.502 -5.324 5 A_A5:U6_B A 5 ? B 6 ? 20 1 1 A G 6 1_555 B C 5 1_555 0.062 -0.012 0.032 -7.994 -16.362 -1.768 6 A_G6:C5_B A 6 ? B 5 ? 19 1 1 A A 7 1_555 B U 4 1_555 -0.283 -0.106 0.433 0.672 -10.475 -1.379 7 A_A7:U4_B A 7 ? B 4 ? 20 1 1 A A 8 1_555 B U 3 1_555 0.113 -0.014 0.282 6.438 -17.771 -2.629 8 A_A8:U3_B A 8 ? B 3 ? 20 1 1 A G 9 1_555 B C 2 1_555 -0.247 -0.111 0.276 3.346 -15.412 -3.531 9 A_G9:C2_B A 9 ? B 2 ? 19 1 1 A C 10 1_555 B G 1 1_555 0.421 -0.136 0.154 1.770 -18.590 -1.099 10 A_C10:G1_B A 10 ? B 1 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 1 1_555 B C 10 1_555 A A 2 1_555 B U 9 1_555 -0.099 -1.967 3.053 -3.267 7.999 34.454 -4.245 -0.253 2.546 13.247 5.410 35.489 1 AA_G1A2:U9C10_BB A 1 ? B 10 ? A 2 ? B 9 ? 1 A A 2 1_555 B U 9 1_555 A A 3 1_555 B U 8 1_555 -0.012 -2.226 2.923 0.677 7.698 25.539 -6.428 0.166 2.169 16.925 -1.490 26.664 2 AA_A2A3:U8U9_BB A 2 ? B 9 ? A 3 ? B 8 ? 1 A A 3 1_555 B U 8 1_555 A G 4 1_555 B C 7 1_555 0.121 -2.384 3.096 0.458 9.098 28.984 -6.089 -0.154 2.262 17.637 -0.888 30.353 3 AA_A3G4:C7U8_BB A 3 ? B 8 ? A 4 ? B 7 ? 1 A G 4 1_555 B C 7 1_555 A A 5 1_555 B U 6 1_555 0.029 -1.985 3.089 0.495 4.102 33.439 -4.032 0.024 2.832 7.095 -0.856 33.686 4 AA_G4A5:U6C7_BB A 4 ? B 7 ? A 5 ? B 6 ? 1 A A 5 1_555 B U 6 1_555 A G 6 1_555 B C 5 1_555 -0.129 -2.085 3.158 1.024 6.558 31.727 -4.780 0.394 2.679 11.833 -1.848 32.397 5 AA_A5G6:C5U6_BB A 5 ? B 6 ? A 6 ? B 5 ? 1 A G 6 1_555 B C 5 1_555 A A 7 1_555 B U 4 1_555 -0.016 -1.925 2.786 -2.797 4.231 29.741 -4.400 -0.431 2.486 8.168 5.401 30.161 6 AA_G6A7:U4C5_BB A 6 ? B 5 ? A 7 ? B 4 ? 1 A A 7 1_555 B U 4 1_555 A A 8 1_555 B U 3 1_555 -0.393 -1.505 2.968 0.361 -0.197 34.775 -2.491 0.707 2.972 -0.329 -0.604 34.778 7 AA_A7A8:U3U4_BB A 7 ? B 4 ? A 8 ? B 3 ? 1 A A 8 1_555 B U 3 1_555 A G 9 1_555 B C 2 1_555 0.127 -2.210 3.035 -1.040 8.744 30.218 -5.444 -0.396 2.316 16.341 1.943 31.446 8 AA_A8G9:C2U3_BB A 8 ? B 3 ? A 9 ? B 2 ? 1 A G 9 1_555 B C 2 1_555 A C 10 1_555 B G 1 1_555 -0.208 -2.030 3.141 -0.746 1.411 34.377 -3.639 0.242 3.061 2.386 1.261 34.413 9 AA_G9C10:G1C2_BB A 9 ? B 2 ? A 10 ? B 1 ? #