data_1S1O # _entry.id 1S1O # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.381 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1S1O pdb_00001s1o 10.2210/pdb1s1o/pdb RCSB RCSB021254 ? ? WWPDB D_1000021254 ? ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 1R9V _pdbx_database_related.details 'D,L alternating dodecamer of norleucine' _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1S1O _pdbx_database_status.recvd_initial_deposition_date 2004-01-07 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_mr REL _pdbx_database_status.SG_entry . _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Navarro, E.' 1 'Fennude, E.' 2 'Celda, B.' 3 # _citation.id primary _citation.title 'Solution structure of a D,L-alternating oligonorleucine as a model of double-stranded antiparallel beta-helix.' _citation.journal_abbrev Biopolymers _citation.journal_volume 64 _citation.page_first 198 _citation.page_last 209 _citation.year 2002 _citation.journal_id_ASTM BIPMAA _citation.country US _citation.journal_id_ISSN 0006-3525 _citation.journal_id_CSD 0161 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 12115137 _citation.pdbx_database_id_DOI 10.1002/bip.10172 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Navarro, E.' 1 ? primary 'Fenude, E.' 2 ? primary 'Celda, B.' 3 ? # _cell.entry_id 1S1O _cell.length_a 1.000 _cell.length_b 1.000 _cell.length_c 1.000 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1S1O _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 # _entity.id 1 _entity.type polymer _entity.src_method syn _entity.pdbx_description 'BOC-L-NLE-(D-NLE-L-NLE)5-D-NLE(METHYL)-L-NLE-D-NLE-L-NLE METHYL ESTER' _entity.formula_weight 1843.550 _entity.pdbx_number_of_molecules 2 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(BOC)(NLE)(DNE)(NLE)(DNE)(NLE)(DNE)(NLE)(DNE)(NLE)(DNE)(NLE)(DNM)(NLE)(DNE)(NLO)' _entity_poly.pdbx_seq_one_letter_code_can XLLLLLLLLLLLXLLL _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 BOC n 1 2 NLE n 1 3 DNE n 1 4 NLE n 1 5 DNE n 1 6 NLE n 1 7 DNE n 1 8 NLE n 1 9 DNE n 1 10 NLE n 1 11 DNE n 1 12 NLE n 1 13 DNM n 1 14 NLE n 1 15 DNE n 1 16 NLO n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'The peptide was chemimcally synthesized.' # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 1S1O _struct_ref.pdbx_db_accession 1S1O _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1S1O A 1 ? 16 ? 1S1O 0 ? 15 ? 0 15 2 1 1S1O B 1 ? 16 ? 1S1O 0 ? 15 ? 0 15 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight BOC non-polymer . 'TERT-BUTYL HYDROGEN CARBONATE' ? 'C5 H10 O3' 118.131 DNE 'D-peptide linking' . D-NORLEUCINE ? 'C6 H13 N O2' 131.173 DNM 'D-peptide linking' . N-methyl-D-norleucine ? 'C7 H15 N O2' 145.199 NLE 'L-peptide linking' n NORLEUCINE ? 'C6 H13 N O2' 131.173 NLO 'L-peptide linking' n O-METHYL-L-NORLEUCINE ? 'C7 H15 N O2' 145.199 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type 1 1 1 DQF-COSY 2 1 1 '2D TOCSY' 3 1 1 '2D ROESY' # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 303 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pH ? _pdbx_nmr_exptl_sample_conditions.ionic_strength ? _pdbx_nmr_exptl_sample_conditions.pressure_units ? _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '4.7 mM' _pdbx_nmr_sample_details.solvent_system Chloroform-d # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.type ? _pdbx_nmr_spectrometer.manufacturer Varian _pdbx_nmr_spectrometer.model UNITY _pdbx_nmr_spectrometer.field_strength 400 # _pdbx_nmr_refine.entry_id 1S1O _pdbx_nmr_refine.method 'molecular dynamics' _pdbx_nmr_refine.details 'Structures based on a total of 68 restraints: 28 interchain distance constraints and 40 intrachain distance constraints' _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_details.entry_id 1S1O _pdbx_nmr_details.text 'This structure was determined using standard 2D homonuclear techniques' # _pdbx_nmr_ensemble.entry_id 1S1O _pdbx_nmr_ensemble.conformers_calculated_total_number 50 _pdbx_nmr_ensemble.conformers_submitted_total_number 5 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 1S1O _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.classification _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal Discover 2.9.7 'structure solution' BIOSYM 1 VNMR ? 'data analysis' VARIAN 2 Discover 2.9.7 refinement BIOSYM 3 # _exptl.entry_id 1S1O _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol ? _exptl_crystal.description ? _exptl_crystal.density_Matthews ? # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _struct.entry_id 1S1O _struct.title 'NMR Structure of a D,L Alternating pentadecamer of norleucine: double antiparallel beta-helix' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1S1O _struct_keywords.pdbx_keywords 'DE NOVO PROTEIN' _struct_keywords.text 'beta-helix, gramicidin, norleucine, d, l-alternating, DE NOVO PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A BOC 1 C ? ? ? 1_555 A NLE 2 N ? ? A BOC 0 A NLE 1 1_555 ? ? ? ? ? ? ? 1.337 ? ? covale2 covale both ? A NLE 2 C ? ? ? 1_555 A DNE 3 N ? ? A NLE 1 A DNE 2 1_555 ? ? ? ? ? ? ? 1.331 sing ? covale3 covale both ? A DNE 3 C ? ? ? 1_555 A NLE 4 N ? ? A DNE 2 A NLE 3 1_555 ? ? ? ? ? ? ? 1.333 sing ? covale4 covale both ? A NLE 4 C ? ? ? 1_555 A DNE 5 N ? ? A NLE 3 A DNE 4 1_555 ? ? ? ? ? ? ? 1.334 sing ? covale5 covale both ? A DNE 5 C ? ? ? 1_555 A NLE 6 N ? ? A DNE 4 A NLE 5 1_555 ? ? ? ? ? ? ? 1.335 sing ? covale6 covale both ? A NLE 6 C ? ? ? 1_555 A DNE 7 N ? ? A NLE 5 A DNE 6 1_555 ? ? ? ? ? ? ? 1.334 sing ? covale7 covale both ? A DNE 7 C ? ? ? 1_555 A NLE 8 N ? ? A DNE 6 A NLE 7 1_555 ? ? ? ? ? ? ? 1.331 sing ? covale8 covale both ? A NLE 8 C ? ? ? 1_555 A DNE 9 N ? ? A NLE 7 A DNE 8 1_555 ? ? ? ? ? ? ? 1.334 sing ? covale9 covale both ? A DNE 9 C ? ? ? 1_555 A NLE 10 N ? ? A DNE 8 A NLE 9 1_555 ? ? ? ? ? ? ? 1.331 sing ? covale10 covale both ? A NLE 10 C ? ? ? 1_555 A DNE 11 N ? ? A NLE 9 A DNE 10 1_555 ? ? ? ? ? ? ? 1.332 sing ? covale11 covale both ? A DNE 11 C ? ? ? 1_555 A NLE 12 N ? ? A DNE 10 A NLE 11 1_555 ? ? ? ? ? ? ? 1.331 sing ? covale12 covale both ? A NLE 12 C ? ? ? 1_555 A DNM 13 N ? ? A NLE 11 A DNM 12 1_555 ? ? ? ? ? ? ? 1.351 sing ? covale13 covale both ? A DNM 13 C ? ? ? 1_555 A NLE 14 N ? ? A DNM 12 A NLE 13 1_555 ? ? ? ? ? ? ? 1.336 sing ? covale14 covale both ? A NLE 14 C ? ? ? 1_555 A DNE 15 N ? ? A NLE 13 A DNE 14 1_555 ? ? ? ? ? ? ? 1.334 sing ? covale15 covale both ? A DNE 15 C ? ? ? 1_555 A NLO 16 N ? ? A DNE 14 A NLO 15 1_555 ? ? ? ? ? ? ? 1.337 ? ? covale16 covale both ? B BOC 1 C ? ? ? 1_555 B NLE 2 N ? ? B BOC 0 B NLE 1 1_555 ? ? ? ? ? ? ? 1.333 ? ? covale17 covale both ? B NLE 2 C ? ? ? 1_555 B DNE 3 N ? ? B NLE 1 B DNE 2 1_555 ? ? ? ? ? ? ? 1.335 ? ? covale18 covale both ? B DNE 3 C ? ? ? 1_555 B NLE 4 N ? ? B DNE 2 B NLE 3 1_555 ? ? ? ? ? ? ? 1.335 ? ? covale19 covale both ? B NLE 4 C ? ? ? 1_555 B DNE 5 N ? ? B NLE 3 B DNE 4 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale20 covale both ? B DNE 5 C ? ? ? 1_555 B NLE 6 N ? ? B DNE 4 B NLE 5 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale21 covale both ? B NLE 6 C ? ? ? 1_555 B DNE 7 N ? ? B NLE 5 B DNE 6 1_555 ? ? ? ? ? ? ? 1.336 ? ? covale22 covale both ? B DNE 7 C ? ? ? 1_555 B NLE 8 N ? ? B DNE 6 B NLE 7 1_555 ? ? ? ? ? ? ? 1.337 ? ? covale23 covale both ? B NLE 8 C ? ? ? 1_555 B DNE 9 N ? ? B NLE 7 B DNE 8 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale24 covale both ? B DNE 9 C ? ? ? 1_555 B NLE 10 N ? ? B DNE 8 B NLE 9 1_555 ? ? ? ? ? ? ? 1.333 ? ? covale25 covale both ? B NLE 10 C ? ? ? 1_555 B DNE 11 N ? ? B NLE 9 B DNE 10 1_555 ? ? ? ? ? ? ? 1.335 ? ? covale26 covale both ? B DNE 11 C ? ? ? 1_555 B NLE 12 N ? ? B DNE 10 B NLE 11 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale27 covale both ? B DNM 13 C ? ? ? 1_555 B NLE 14 N ? ? B DNM 12 B NLE 13 1_555 ? ? ? ? ? ? ? 1.334 ? ? covale28 covale both ? B NLE 14 C ? ? ? 1_555 B DNE 15 N ? ? B NLE 13 B DNE 14 1_555 ? ? ? ? ? ? ? 1.336 ? ? covale29 covale both ? B DNE 15 C ? ? ? 1_555 B NLO 16 N ? ? B DNE 14 B NLO 15 1_555 ? ? ? ? ? ? ? 1.332 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 2 _struct_sheet.details ? # _struct_sheet_order.sheet_id A _struct_sheet_order.range_id_1 1 _struct_sheet_order.range_id_2 2 _struct_sheet_order.offset ? _struct_sheet_order.sense anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 DNE A 3 ? NLE A 14 ? DNE A 2 NLE A 13 A 2 DNE B 3 ? DNE B 15 ? DNE B 2 DNE B 14 # _pdbx_struct_sheet_hbond.sheet_id A _pdbx_struct_sheet_hbond.range_id_1 1 _pdbx_struct_sheet_hbond.range_id_2 2 _pdbx_struct_sheet_hbond.range_1_label_atom_id N _pdbx_struct_sheet_hbond.range_1_label_comp_id DNE _pdbx_struct_sheet_hbond.range_1_label_asym_id A _pdbx_struct_sheet_hbond.range_1_label_seq_id 3 _pdbx_struct_sheet_hbond.range_1_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_1_auth_atom_id N _pdbx_struct_sheet_hbond.range_1_auth_comp_id DNE _pdbx_struct_sheet_hbond.range_1_auth_asym_id A _pdbx_struct_sheet_hbond.range_1_auth_seq_id 2 _pdbx_struct_sheet_hbond.range_2_label_atom_id O _pdbx_struct_sheet_hbond.range_2_label_comp_id DNE _pdbx_struct_sheet_hbond.range_2_label_asym_id B _pdbx_struct_sheet_hbond.range_2_label_seq_id 11 _pdbx_struct_sheet_hbond.range_2_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_2_auth_atom_id O _pdbx_struct_sheet_hbond.range_2_auth_comp_id DNE _pdbx_struct_sheet_hbond.range_2_auth_asym_id B _pdbx_struct_sheet_hbond.range_2_auth_seq_id 10 # _database_PDB_matrix.entry_id 1S1O _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1S1O _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 BOC 1 0 0 BOC BOC A . n A 1 2 NLE 2 1 1 NLE NLE A . n A 1 3 DNE 3 2 2 DNE DNE A . n A 1 4 NLE 4 3 3 NLE NLE A . n A 1 5 DNE 5 4 4 DNE DNE A . n A 1 6 NLE 6 5 5 NLE NLE A . n A 1 7 DNE 7 6 6 DNE DNE A . n A 1 8 NLE 8 7 7 NLE NLE A . n A 1 9 DNE 9 8 8 DNE DNE A . n A 1 10 NLE 10 9 9 NLE NLE A . n A 1 11 DNE 11 10 10 DNE DNE A . n A 1 12 NLE 12 11 11 NLE NLE A . n A 1 13 DNM 13 12 12 DNM DNM A . n A 1 14 NLE 14 13 13 NLE NLE A . n A 1 15 DNE 15 14 14 DNE DNE A . n A 1 16 NLO 16 15 15 NLO NLE A . n B 1 1 BOC 1 0 0 BOC BOC B . n B 1 2 NLE 2 1 1 NLE NLE B . n B 1 3 DNE 3 2 2 DNE DNE B . n B 1 4 NLE 4 3 3 NLE NLE B . n B 1 5 DNE 5 4 4 DNE DNE B . n B 1 6 NLE 6 5 5 NLE NLE B . n B 1 7 DNE 7 6 6 DNE DNE B . n B 1 8 NLE 8 7 7 NLE NLE B . n B 1 9 DNE 9 8 8 DNE DNE B . n B 1 10 NLE 10 9 9 NLE NLE B . n B 1 11 DNE 11 10 10 DNE DNE B . n B 1 12 NLE 12 11 11 NLE NLE B . n B 1 13 DNM 13 12 12 DNM DNM B . n B 1 14 NLE 14 13 13 NLE NLE B . n B 1 15 DNE 15 14 14 DNE DNE B . n B 1 16 NLO 16 15 15 NLO NLE B . n # _pdbx_molecule_features.prd_id PRD_000109 _pdbx_molecule_features.name 'BOC-L-NLE-(D-NLE-L-NLE)5-D-NLE(METHYL)-L-NLE-D-NLE-L-NLE METHYL ESTER' _pdbx_molecule_features.type Polypeptide _pdbx_molecule_features.class Antibiotic _pdbx_molecule_features.details ? # _pdbx_molecule.instance_id 1 _pdbx_molecule.prd_id PRD_000109 _pdbx_molecule.asym_id A # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A NLE 2 A NLE 1 ? LEU NORLEUCINE 2 A NLE 4 A NLE 3 ? LEU NORLEUCINE 3 A NLE 6 A NLE 5 ? LEU NORLEUCINE 4 A NLE 8 A NLE 7 ? LEU NORLEUCINE 5 A NLE 10 A NLE 9 ? LEU NORLEUCINE 6 A NLE 12 A NLE 11 ? LEU NORLEUCINE 7 A NLE 14 A NLE 13 ? LEU NORLEUCINE 8 A NLO 16 A NLO 15 ? LEU O-METHYL-L-NORLEUCINE 9 B NLE 2 B NLE 1 ? LEU NORLEUCINE 10 B NLE 4 B NLE 3 ? LEU NORLEUCINE 11 B NLE 6 B NLE 5 ? LEU NORLEUCINE 12 B NLE 8 B NLE 7 ? LEU NORLEUCINE 13 B NLE 10 B NLE 9 ? LEU NORLEUCINE 14 B NLE 12 B NLE 11 ? LEU NORLEUCINE 15 B NLE 14 B NLE 13 ? LEU NORLEUCINE 16 B NLO 16 B NLO 15 ? LEU O-METHYL-L-NORLEUCINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2004-02-24 2 'Structure model' 1 1 2008-04-29 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2012-09-19 5 'Structure model' 1 4 2012-12-12 6 'Structure model' 1 5 2022-02-09 7 'Structure model' 2 0 2023-11-15 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Non-polymer description' 4 4 'Structure model' 'Structure summary' 5 5 'Structure model' Other 6 6 'Structure model' 'Data collection' 7 6 'Structure model' 'Database references' 8 6 'Structure model' 'Derived calculations' 9 7 'Structure model' 'Atomic model' 10 7 'Structure model' 'Data collection' 11 7 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 6 'Structure model' database_2 2 6 'Structure model' pdbx_nmr_software 3 6 'Structure model' struct_conn 4 6 'Structure model' struct_ref_seq 5 7 'Structure model' atom_site 6 7 'Structure model' chem_comp_atom 7 7 'Structure model' chem_comp_bond 8 7 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 6 'Structure model' '_database_2.pdbx_DOI' 2 6 'Structure model' '_database_2.pdbx_database_accession' 3 6 'Structure model' '_pdbx_nmr_software.name' 4 6 'Structure model' '_struct_conn.pdbx_dist_value' 5 6 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 6 6 'Structure model' '_struct_conn.pdbx_value_order' 7 6 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 8 6 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 9 6 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 10 6 'Structure model' '_struct_conn.ptnr1_label_asym_id' 11 6 'Structure model' '_struct_conn.ptnr1_label_comp_id' 12 6 'Structure model' '_struct_conn.ptnr1_label_seq_id' 13 6 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 14 6 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 15 6 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 16 6 'Structure model' '_struct_conn.ptnr2_label_asym_id' 17 6 'Structure model' '_struct_conn.ptnr2_label_comp_id' 18 6 'Structure model' '_struct_conn.ptnr2_label_seq_id' 19 6 'Structure model' '_struct_ref_seq.db_align_beg' 20 6 'Structure model' '_struct_ref_seq.db_align_end' 21 7 'Structure model' '_atom_site.auth_atom_id' 22 7 'Structure model' '_atom_site.label_atom_id' 23 7 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 DNE A 10 ? ? 168.44 -84.67 2 1 NLE A 13 ? ? -55.15 109.71 3 1 DNE B 4 ? ? 168.97 -82.51 4 2 DNE A 4 ? ? 117.31 -62.54 5 2 NLE B 13 ? ? -57.08 106.64 6 3 DNE B 4 ? ? 107.80 -79.17 7 3 DNE B 14 ? ? 140.36 -40.76 8 4 DNE B 6 ? ? 163.91 -91.81 9 5 DNE B 4 ? ? 158.89 -73.85 10 5 DNE B 10 ? ? 141.83 -53.67 11 5 DNE B 14 ? ? 140.09 -48.49 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A NLO 15 ? C1 ? A NLO 16 C1 2 1 Y 1 B NLO 15 ? C1 ? B NLO 16 C1 3 2 Y 1 A NLO 15 ? C1 ? A NLO 16 C1 4 2 Y 1 B NLO 15 ? C1 ? B NLO 16 C1 5 3 Y 1 A NLO 15 ? C1 ? A NLO 16 C1 6 3 Y 1 B NLO 15 ? C1 ? B NLO 16 C1 7 4 Y 1 A NLO 15 ? C1 ? A NLO 16 C1 8 4 Y 1 B NLO 15 ? C1 ? B NLO 16 C1 9 5 Y 1 A NLO 15 ? C1 ? A NLO 16 C1 10 5 Y 1 B NLO 15 ? C1 ? B NLO 16 C1 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal BOC O1 O N N 1 BOC C C N N 2 BOC O2 O N N 3 BOC CT C N N 4 BOC C1 C N N 5 BOC C2 C N N 6 BOC C3 C N N 7 BOC O3 O N N 8 BOC H11 H N N 9 BOC H12 H N N 10 BOC H13 H N N 11 BOC H21 H N N 12 BOC H22 H N N 13 BOC H23 H N N 14 BOC H31 H N N 15 BOC H32 H N N 16 BOC H33 H N N 17 BOC H3 H N N 18 DNE N N N N 19 DNE CA C N R 20 DNE C C N N 21 DNE O O N N 22 DNE CB C N N 23 DNE CG C N N 24 DNE CD C N N 25 DNE CE C N N 26 DNE OXT O N N 27 DNE H H N N 28 DNE H2 H N N 29 DNE HA H N N 30 DNE HB2 H N N 31 DNE HB3 H N N 32 DNE HG2 H N N 33 DNE HG3 H N N 34 DNE HD2 H N N 35 DNE HD3 H N N 36 DNE HE1 H N N 37 DNE HE2 H N N 38 DNE HE3 H N N 39 DNE HXT H N N 40 DNM C C N N 41 DNM N N N N 42 DNM O O N N 43 DNM C1 C N N 44 DNM CA C N R 45 DNM CB C N N 46 DNM CD C N N 47 DNM CE C N N 48 DNM CG C N N 49 DNM OXT O N N 50 DNM HA H N N 51 DNM HB H N N 52 DNM HBA H N N 53 DNM H1 H N N 54 DNM H1A H N N 55 DNM H1B H N N 56 DNM HD H N N 57 DNM HDA H N N 58 DNM HE H N N 59 DNM HEA H N N 60 DNM HEB H N N 61 DNM HG H N N 62 DNM HGA H N N 63 DNM H H N N 64 DNM HXT H N N 65 NLE N N N N 66 NLE CA C N S 67 NLE C C N N 68 NLE O O N N 69 NLE OXT O N N 70 NLE CB C N N 71 NLE CG C N N 72 NLE CD C N N 73 NLE CE C N N 74 NLE H H N N 75 NLE H2 H N N 76 NLE HA H N N 77 NLE HXT H N N 78 NLE HB2 H N N 79 NLE HB3 H N N 80 NLE HG2 H N N 81 NLE HG3 H N N 82 NLE HD2 H N N 83 NLE HD3 H N N 84 NLE HE1 H N N 85 NLE HE2 H N N 86 NLE HE3 H N N 87 NLO N N N N 88 NLO CA C N S 89 NLO C C N N 90 NLO O O N N 91 NLO CB C N N 92 NLO CG C N N 93 NLO CD C N N 94 NLO CE C N N 95 NLO OXT O N N 96 NLO C1 C N N 97 NLO H H N N 98 NLO H2 H N N 99 NLO HA H N N 100 NLO HB2 H N N 101 NLO HB3 H N N 102 NLO HG2 H N N 103 NLO HG3 H N N 104 NLO HD2 H N N 105 NLO HD3 H N N 106 NLO HE1 H N N 107 NLO HE2 H N N 108 NLO HE3 H N N 109 NLO H11 H N N 110 NLO H12 H N N 111 NLO H13 H N N 112 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal BOC O1 C doub N N 1 BOC C O2 sing N N 2 BOC O2 CT sing N N 3 BOC CT C1 sing N N 4 BOC CT C2 sing N N 5 BOC CT C3 sing N N 6 BOC O3 C sing N N 7 BOC C1 H11 sing N N 8 BOC C1 H12 sing N N 9 BOC C1 H13 sing N N 10 BOC C2 H21 sing N N 11 BOC C2 H22 sing N N 12 BOC C2 H23 sing N N 13 BOC C3 H31 sing N N 14 BOC C3 H32 sing N N 15 BOC C3 H33 sing N N 16 BOC O3 H3 sing N N 17 DNE N CA sing N N 18 DNE N H sing N N 19 DNE N H2 sing N N 20 DNE CA C sing N N 21 DNE CA CB sing N N 22 DNE CA HA sing N N 23 DNE C O doub N N 24 DNE C OXT sing N N 25 DNE CB CG sing N N 26 DNE CB HB2 sing N N 27 DNE CB HB3 sing N N 28 DNE CG CD sing N N 29 DNE CG HG2 sing N N 30 DNE CG HG3 sing N N 31 DNE CD CE sing N N 32 DNE CD HD2 sing N N 33 DNE CD HD3 sing N N 34 DNE CE HE1 sing N N 35 DNE CE HE2 sing N N 36 DNE CE HE3 sing N N 37 DNE OXT HXT sing N N 38 DNM OXT C sing N N 39 DNM O C doub N N 40 DNM C CA sing N N 41 DNM CA N sing N N 42 DNM C1 N sing N N 43 DNM N H sing N N 44 DNM OXT HXT sing N N 45 DNM H1 C1 sing N N 46 DNM C1 H1B sing N N 47 DNM C1 H1A sing N N 48 DNM CB CA sing N N 49 DNM CA HA sing N N 50 DNM HB CB sing N N 51 DNM HBA CB sing N N 52 DNM CB CG sing N N 53 DNM CE CD sing N N 54 DNM HDA CD sing N N 55 DNM CD HD sing N N 56 DNM CD CG sing N N 57 DNM HEA CE sing N N 58 DNM HEB CE sing N N 59 DNM CE HE sing N N 60 DNM CG HGA sing N N 61 DNM CG HG sing N N 62 NLE N CA sing N N 63 NLE N H sing N N 64 NLE N H2 sing N N 65 NLE CA C sing N N 66 NLE CA CB sing N N 67 NLE CA HA sing N N 68 NLE C O doub N N 69 NLE C OXT sing N N 70 NLE OXT HXT sing N N 71 NLE CB CG sing N N 72 NLE CB HB2 sing N N 73 NLE CB HB3 sing N N 74 NLE CG CD sing N N 75 NLE CG HG2 sing N N 76 NLE CG HG3 sing N N 77 NLE CD CE sing N N 78 NLE CD HD2 sing N N 79 NLE CD HD3 sing N N 80 NLE CE HE1 sing N N 81 NLE CE HE2 sing N N 82 NLE CE HE3 sing N N 83 NLO N CA sing N N 84 NLO N H sing N N 85 NLO N H2 sing N N 86 NLO CA C sing N N 87 NLO CA CB sing N N 88 NLO CA HA sing N N 89 NLO C O doub N N 90 NLO C OXT sing N N 91 NLO CB CG sing N N 92 NLO CB HB2 sing N N 93 NLO CB HB3 sing N N 94 NLO CG CD sing N N 95 NLO CG HG2 sing N N 96 NLO CG HG3 sing N N 97 NLO CD CE sing N N 98 NLO CD HD2 sing N N 99 NLO CD HD3 sing N N 100 NLO CE HE1 sing N N 101 NLO CE HE2 sing N N 102 NLO CE HE3 sing N N 103 NLO OXT C1 sing N N 104 NLO C1 H11 sing N N 105 NLO C1 H12 sing N N 106 NLO C1 H13 sing N N 107 #