data_1S2X # _entry.id 1S2X # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.351 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1S2X pdb_00001s2x 10.2210/pdb1s2x/pdb RCSB RCSB021299 ? ? WWPDB D_1000021299 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1S2X _pdbx_database_status.recvd_initial_deposition_date 2004-01-12 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Cendron, L.' 1 'Seydel, A.' 2 'Angelini, A.' 3 'Battistutta, R.' 4 'Zanotti, G.' 5 # _citation.id primary _citation.title 'Crystal structure of CagZ, a protein from the Helicobacter pylori pathogenicity island that encodes for a type IV secretion system' _citation.journal_abbrev J.Mol.Biol. _citation.journal_volume 340 _citation.page_first 881 _citation.page_last 889 _citation.year 2004 _citation.journal_id_ASTM JMOBAK _citation.country UK _citation.journal_id_ISSN 0022-2836 _citation.journal_id_CSD 0070 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 15223328 _citation.pdbx_database_id_DOI 10.1016/j.jmb.2004.05.016 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Cendron, L.' 1 ? primary 'Seydel, A.' 2 ? primary 'Angelini, A.' 3 ? primary 'Battistutta, R.' 4 ? primary 'Zanotti, G.' 5 ? # _cell.entry_id 1S2X _cell.length_a 31.550 _cell.length_b 44.650 _cell.length_c 159.600 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1S2X _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man Cag-Z 23938.371 1 ? M1D ? ? 2 non-polymer syn 'ISOPROPYL ALCOHOL' 60.095 1 ? ? ? ? 3 water nat water 18.015 91 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;GSPNSRVDELGFNEAERQKILDSNSSL(MSE)RNANEVRDKFIQNYATSLKDSNDPQDFLRRVQELRIN(MSE)QKNFIS FDAYYNYLNNLVLASYNRCKQEKTFAESTIKNELTLGEFVAEISDNFNNFTCDEVARISDLVASYLPREYLPPFIDGN (MSE)(MSE)GVAFQILGIDDFGKKLNEIVQDIGTKYIILSKNKTYLTSLERAKLITQLKLNLE ; _entity_poly.pdbx_seq_one_letter_code_can ;GSPNSRVDELGFNEAERQKILDSNSSLMRNANEVRDKFIQNYATSLKDSNDPQDFLRRVQELRINMQKNFISFDAYYNYL NNLVLASYNRCKQEKTFAESTIKNELTLGEFVAEISDNFNNFTCDEVARISDLVASYLPREYLPPFIDGNMMGVAFQILG IDDFGKKLNEIVQDIGTKYIILSKNKTYLTSLERAKLITQLKLNLE ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 PRO n 1 4 ASN n 1 5 SER n 1 6 ARG n 1 7 VAL n 1 8 ASP n 1 9 GLU n 1 10 LEU n 1 11 GLY n 1 12 PHE n 1 13 ASN n 1 14 GLU n 1 15 ALA n 1 16 GLU n 1 17 ARG n 1 18 GLN n 1 19 LYS n 1 20 ILE n 1 21 LEU n 1 22 ASP n 1 23 SER n 1 24 ASN n 1 25 SER n 1 26 SER n 1 27 LEU n 1 28 MSE n 1 29 ARG n 1 30 ASN n 1 31 ALA n 1 32 ASN n 1 33 GLU n 1 34 VAL n 1 35 ARG n 1 36 ASP n 1 37 LYS n 1 38 PHE n 1 39 ILE n 1 40 GLN n 1 41 ASN n 1 42 TYR n 1 43 ALA n 1 44 THR n 1 45 SER n 1 46 LEU n 1 47 LYS n 1 48 ASP n 1 49 SER n 1 50 ASN n 1 51 ASP n 1 52 PRO n 1 53 GLN n 1 54 ASP n 1 55 PHE n 1 56 LEU n 1 57 ARG n 1 58 ARG n 1 59 VAL n 1 60 GLN n 1 61 GLU n 1 62 LEU n 1 63 ARG n 1 64 ILE n 1 65 ASN n 1 66 MSE n 1 67 GLN n 1 68 LYS n 1 69 ASN n 1 70 PHE n 1 71 ILE n 1 72 SER n 1 73 PHE n 1 74 ASP n 1 75 ALA n 1 76 TYR n 1 77 TYR n 1 78 ASN n 1 79 TYR n 1 80 LEU n 1 81 ASN n 1 82 ASN n 1 83 LEU n 1 84 VAL n 1 85 LEU n 1 86 ALA n 1 87 SER n 1 88 TYR n 1 89 ASN n 1 90 ARG n 1 91 CYS n 1 92 LYS n 1 93 GLN n 1 94 GLU n 1 95 LYS n 1 96 THR n 1 97 PHE n 1 98 ALA n 1 99 GLU n 1 100 SER n 1 101 THR n 1 102 ILE n 1 103 LYS n 1 104 ASN n 1 105 GLU n 1 106 LEU n 1 107 THR n 1 108 LEU n 1 109 GLY n 1 110 GLU n 1 111 PHE n 1 112 VAL n 1 113 ALA n 1 114 GLU n 1 115 ILE n 1 116 SER n 1 117 ASP n 1 118 ASN n 1 119 PHE n 1 120 ASN n 1 121 ASN n 1 122 PHE n 1 123 THR n 1 124 CYS n 1 125 ASP n 1 126 GLU n 1 127 VAL n 1 128 ALA n 1 129 ARG n 1 130 ILE n 1 131 SER n 1 132 ASP n 1 133 LEU n 1 134 VAL n 1 135 ALA n 1 136 SER n 1 137 TYR n 1 138 LEU n 1 139 PRO n 1 140 ARG n 1 141 GLU n 1 142 TYR n 1 143 LEU n 1 144 PRO n 1 145 PRO n 1 146 PHE n 1 147 ILE n 1 148 ASP n 1 149 GLY n 1 150 ASN n 1 151 MSE n 1 152 MSE n 1 153 GLY n 1 154 VAL n 1 155 ALA n 1 156 PHE n 1 157 GLN n 1 158 ILE n 1 159 LEU n 1 160 GLY n 1 161 ILE n 1 162 ASP n 1 163 ASP n 1 164 PHE n 1 165 GLY n 1 166 LYS n 1 167 LYS n 1 168 LEU n 1 169 ASN n 1 170 GLU n 1 171 ILE n 1 172 VAL n 1 173 GLN n 1 174 ASP n 1 175 ILE n 1 176 GLY n 1 177 THR n 1 178 LYS n 1 179 TYR n 1 180 ILE n 1 181 ILE n 1 182 LEU n 1 183 SER n 1 184 LYS n 1 185 ASN n 1 186 LYS n 1 187 THR n 1 188 TYR n 1 189 LEU n 1 190 THR n 1 191 SER n 1 192 LEU n 1 193 GLU n 1 194 ARG n 1 195 ALA n 1 196 LYS n 1 197 LEU n 1 198 ILE n 1 199 THR n 1 200 GLN n 1 201 LEU n 1 202 LYS n 1 203 LEU n 1 204 ASN n 1 205 LEU n 1 206 GLU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Helicobacter _entity_src_gen.pdbx_gene_src_gene cagZ _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Helicobacter pylori' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 210 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species 'Escherichia coli' _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21 (DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pGEX-4T-3 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q9JMX9_HELPY _struct_ref.pdbx_db_accession Q9JMX9 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MELGFNEAERQKILDSNSSLMRNANEVRDKFIQNYATSLKDSNDPQDFLRRVQELRINMQKNFISFDAYYNYLNNLVLAS YNRCKQEKTFAESTIKNELTLGEFVAEISDNFNNFTCDEVARISDLVASYLPREYLPPFIDGNMMGVAFQILGIDDFGKK LNEIVQDIGTKYIILSKNKTYLTSLERAKLITQLKLNLE ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1S2X _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 8 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 206 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q9JMX9 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 199 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 199 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 1S2X GLY A 1 ? UNP Q9JMX9 ? ? 'cloning artifact' -6 1 1 1S2X SER A 2 ? UNP Q9JMX9 ? ? 'cloning artifact' -5 2 1 1S2X PRO A 3 ? UNP Q9JMX9 ? ? 'cloning artifact' -4 3 1 1S2X ASN A 4 ? UNP Q9JMX9 ? ? 'cloning artifact' -3 4 1 1S2X SER A 5 ? UNP Q9JMX9 ? ? 'cloning artifact' -2 5 1 1S2X ARG A 6 ? UNP Q9JMX9 ? ? 'cloning artifact' -1 6 1 1S2X VAL A 7 ? UNP Q9JMX9 ? ? 'cloning artifact' 0 7 1 1S2X ASP A 8 ? UNP Q9JMX9 MET 1 'engineered mutation' 1 8 1 1S2X MSE A 28 ? UNP Q9JMX9 MET 21 'modified residue' 21 9 1 1S2X MSE A 66 ? UNP Q9JMX9 MET 59 'modified residue' 59 10 1 1S2X MSE A 151 ? UNP Q9JMX9 MET 144 'modified residue' 144 11 1 1S2X MSE A 152 ? UNP Q9JMX9 MET 145 'modified residue' 145 12 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 IPA non-polymer . 'ISOPROPYL ALCOHOL' 2-PROPANOL 'C3 H8 O' 60.095 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1S2X _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 54.70 _exptl_crystal.description ? _exptl_crystal.density_Matthews 2.74 _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pdbx_details 'PEG 4000, isopropanol, HEPES, pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 298K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 4' _diffrn_detector.pdbx_collection_date 2003-09-10 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9202 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ESRF BEAMLINE ID29' _diffrn_source.pdbx_synchrotron_site ESRF _diffrn_source.pdbx_synchrotron_beamline ID29 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.9202 # _reflns.entry_id 1S2X _reflns.observed_criterion_sigma_I 0 _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 45. _reflns.d_resolution_high 1.9 _reflns.number_obs 18377 _reflns.number_all 18377 _reflns.percent_possible_obs 98.6 _reflns.pdbx_Rmerge_I_obs 0.054 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 5.0 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 6.2 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.9 _reflns_shell.d_res_low 2.0 _reflns_shell.percent_possible_all 92.5 _reflns_shell.Rmerge_I_obs 0.246 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 1.7 _reflns_shell.pdbx_redundancy 4.1 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 2406 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 1S2X _refine.ls_number_reflns_obs 14273 _refine.ls_number_reflns_all 17961 _refine.pdbx_ls_sigma_I 4.0 _refine.pdbx_ls_sigma_F 2.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 8.00 _refine.ls_d_res_high 1.90 _refine.ls_percent_reflns_obs 88.9 _refine.ls_R_factor_obs 0.229 _refine.ls_R_factor_all 0.245 _refine.ls_R_factor_R_work 0.238 _refine.ls_R_factor_R_free 0.263 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free 1381 _refine.ls_number_parameters 6267 _refine.ls_number_restraints 5971 _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method 'FREE R' _refine.details 'ANISOTROPIC SCALING APPLIED BY THE METHOD OF PARKIN, MOEZZI & HOPE, J.APPL.CRYST.28(1995)53-56' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_isotropic_thermal_model 'Isotropic, Anisotropic only for 4 Se atoms' _refine.pdbx_stereochemistry_target_values 'ENGH AND HUBER' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 1S2X _refine_analyze.Luzzati_coordinate_error_obs ? _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues 0 _refine_analyze.occupancy_sum_hydrogen 0.00 _refine_analyze.occupancy_sum_non_hydrogen 1556.00 _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1463 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 95 _refine_hist.number_atoms_total 1558 _refine_hist.d_res_high 1.90 _refine_hist.d_res_low 8.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function s_bond_d 0.006 ? ? ? 'X-RAY DIFFRACTION' ? s_angle_d 0.020 ? ? ? 'X-RAY DIFFRACTION' ? s_similar_dist 0.000 ? ? ? 'X-RAY DIFFRACTION' ? s_from_restr_planes 0.0217 ? ? ? 'X-RAY DIFFRACTION' ? s_zero_chiral_vol 0.026 ? ? ? 'X-RAY DIFFRACTION' ? s_non_zero_chiral_vol 0.031 ? ? ? 'X-RAY DIFFRACTION' ? s_anti_bump_dis_restr 0.030 ? ? ? 'X-RAY DIFFRACTION' ? s_rigid_bond_adp_cmpnt 0.000 ? ? ? 'X-RAY DIFFRACTION' ? s_similar_adp_cmpnt 0.085 ? ? ? 'X-RAY DIFFRACTION' ? s_approx_iso_adps 0.000 ? ? ? 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_obs _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.number_reflns_all _refine_ls_shell.pdbx_refine_id _refine_ls_shell.R_factor_all . 1.9 2.0 . 0.353 12.86 . . . . 2133 . . 'X-RAY DIFFRACTION' . . 2.0 2.2 . 0.278 21.52 . . . . 3568 . . 'X-RAY DIFFRACTION' . . 2.2 2.5 . 0.231 20.89 . . . . 3463 . . 'X-RAY DIFFRACTION' . . 2.5 3 . 0.215 18.98 . . . . 3147 . . 'X-RAY DIFFRACTION' . . 3 4 . 0.218 15.48 . . . . 2567 . . 'X-RAY DIFFRACTION' . . 4 8 . 0.257 10.23 . . . . 1697 . . 'X-RAY DIFFRACTION' . # _pdbx_refine.entry_id 1S2X _pdbx_refine.R_factor_all_no_cutoff ? _pdbx_refine.R_factor_obs_no_cutoff ? _pdbx_refine.free_R_factor_no_cutoff ? _pdbx_refine.free_R_val_test_set_size_perc_no_cutoff ? _pdbx_refine.free_R_val_test_set_ct_no_cutoff ? _pdbx_refine.R_factor_all_4sig_cutoff 0.2293 _pdbx_refine.R_factor_obs_4sig_cutoff ? _pdbx_refine.free_R_factor_4sig_cutoff ? _pdbx_refine.free_R_val_test_set_size_perc_4sig_cutoff ? _pdbx_refine.free_R_val_test_set_ct_4sig_cutoff ? _pdbx_refine.number_reflns_obs_4sig_cutoff 13176 _pdbx_refine.number_reflns_obs_no_cutoff ? _pdbx_refine.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine.free_R_error_no_cutoff ? # _struct.entry_id 1S2X _struct.title 'Crystal structure of Cag-Z from Helicobacter pylori' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1S2X _struct_keywords.pdbx_keywords 'UNKNOWN FUNCTION' _struct_keywords.text 'Cag-Z, Helicobacter pylori, cag pathogenicity island, type IV secretion system, UNKNOWN FUNCTION' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASN A 13 ? ASN A 24 ? ASN A 6 ASN A 17 1 ? 12 HELX_P HELX_P2 2 ASN A 30 ? ALA A 43 ? ASN A 23 ALA A 36 1 ? 14 HELX_P HELX_P3 3 THR A 44 ? SER A 49 ? THR A 37 SER A 42 5 ? 6 HELX_P HELX_P4 4 ASP A 51 ? ASN A 69 ? ASP A 44 ASN A 62 1 ? 19 HELX_P HELX_P5 5 PHE A 73 ? ILE A 102 ? PHE A 66 ILE A 95 1 ? 30 HELX_P HELX_P6 6 ASN A 104 ? SER A 136 ? ASN A 97 SER A 129 1 ? 33 HELX_P HELX_P7 7 TYR A 137 ? LEU A 138 ? TYR A 130 LEU A 131 5 ? 2 HELX_P HELX_P8 8 PRO A 139 ? LEU A 143 ? PRO A 132 LEU A 136 5 ? 5 HELX_P HELX_P9 9 ASP A 148 ? LEU A 159 ? ASP A 141 LEU A 152 1 ? 12 HELX_P HELX_P10 10 GLY A 160 ? LYS A 184 ? GLY A 153 LYS A 177 1 ? 25 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A LEU 27 C ? ? ? 1_555 A MSE 28 N ? ? A LEU 20 A MSE 21 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale2 covale both ? A MSE 28 C ? ? ? 1_555 A ARG 29 N ? ? A MSE 21 A ARG 22 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale3 covale both ? A ASN 65 C ? ? ? 1_555 A MSE 66 N ? ? A ASN 58 A MSE 59 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale4 covale both ? A MSE 66 C ? ? ? 1_555 A GLN 67 N ? ? A MSE 59 A GLN 60 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale5 covale both ? A ASN 150 C ? ? ? 1_555 A MSE 151 N ? ? A ASN 143 A MSE 144 1_555 ? ? ? ? ? ? ? 1.322 ? ? covale6 covale both ? A MSE 151 C ? ? ? 1_555 A MSE 152 N ? ? A MSE 144 A MSE 145 1_555 ? ? ? ? ? ? ? 1.337 ? ? covale7 covale both ? A MSE 152 C ? ? ? 1_555 A GLY 153 N ? ? A MSE 145 A GLY 146 1_555 ? ? ? ? ? ? ? 1.328 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id IPA _struct_site.pdbx_auth_seq_id 201 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 1 _struct_site.details 'BINDING SITE FOR RESIDUE IPA A 201' # _struct_site_gen.id 1 _struct_site_gen.site_id AC1 _struct_site_gen.pdbx_num_res 1 _struct_site_gen.label_comp_id SER _struct_site_gen.label_asym_id A _struct_site_gen.label_seq_id 131 _struct_site_gen.pdbx_auth_ins_code ? _struct_site_gen.auth_comp_id SER _struct_site_gen.auth_asym_id A _struct_site_gen.auth_seq_id 124 _struct_site_gen.label_atom_id . _struct_site_gen.label_alt_id ? _struct_site_gen.symmetry 1_555 _struct_site_gen.details ? # _database_PDB_matrix.entry_id 1S2X _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.000000 _database_PDB_matrix.origx_vector[2] 0.000000 _database_PDB_matrix.origx_vector[3] 0.000000 # _atom_sites.entry_id 1S2X _atom_sites.fract_transf_matrix[1][1] 0.031696 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.022396 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.006266 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 -6 ? ? ? A . n A 1 2 SER 2 -5 ? ? ? A . n A 1 3 PRO 3 -4 ? ? ? A . n A 1 4 ASN 4 -3 ? ? ? A . n A 1 5 SER 5 -2 ? ? ? A . n A 1 6 ARG 6 -1 ? ? ? A . n A 1 7 VAL 7 0 0 VAL VAL A . n A 1 8 ASP 8 1 1 ASP ASP A . n A 1 9 GLU 9 2 2 GLU GLU A . n A 1 10 LEU 10 3 3 LEU LEU A . n A 1 11 GLY 11 4 4 GLY GLY A . n A 1 12 PHE 12 5 5 PHE PHE A . n A 1 13 ASN 13 6 6 ASN ASN A . n A 1 14 GLU 14 7 7 GLU GLU A . n A 1 15 ALA 15 8 8 ALA ALA A . n A 1 16 GLU 16 9 9 GLU GLU A . n A 1 17 ARG 17 10 10 ARG ARG A . n A 1 18 GLN 18 11 11 GLN GLN A . n A 1 19 LYS 19 12 12 LYS LYS A . n A 1 20 ILE 20 13 13 ILE ILE A . n A 1 21 LEU 21 14 14 LEU LEU A . n A 1 22 ASP 22 15 15 ASP ASP A . n A 1 23 SER 23 16 16 SER SER A . n A 1 24 ASN 24 17 17 ASN ASN A . n A 1 25 SER 25 18 18 SER SER A . n A 1 26 SER 26 19 19 SER SER A . n A 1 27 LEU 27 20 20 LEU LEU A . n A 1 28 MSE 28 21 21 MSE MET A . n A 1 29 ARG 29 22 22 ARG ARG A . n A 1 30 ASN 30 23 23 ASN ASN A . n A 1 31 ALA 31 24 24 ALA ALA A . n A 1 32 ASN 32 25 25 ASN ASN A . n A 1 33 GLU 33 26 26 GLU GLU A . n A 1 34 VAL 34 27 27 VAL VAL A . n A 1 35 ARG 35 28 28 ARG ARG A . n A 1 36 ASP 36 29 29 ASP ASP A . n A 1 37 LYS 37 30 30 LYS LYS A . n A 1 38 PHE 38 31 31 PHE PHE A . n A 1 39 ILE 39 32 32 ILE ILE A . n A 1 40 GLN 40 33 33 GLN GLN A . n A 1 41 ASN 41 34 34 ASN ASN A . n A 1 42 TYR 42 35 35 TYR TYR A . n A 1 43 ALA 43 36 36 ALA ALA A . n A 1 44 THR 44 37 37 THR THR A . n A 1 45 SER 45 38 38 SER SER A . n A 1 46 LEU 46 39 39 LEU LEU A . n A 1 47 LYS 47 40 40 LYS LYS A . n A 1 48 ASP 48 41 41 ASP ASP A . n A 1 49 SER 49 42 42 SER SER A . n A 1 50 ASN 50 43 43 ASN ASN A . n A 1 51 ASP 51 44 44 ASP ASP A . n A 1 52 PRO 52 45 45 PRO PRO A . n A 1 53 GLN 53 46 46 GLN GLN A . n A 1 54 ASP 54 47 47 ASP ASP A . n A 1 55 PHE 55 48 48 PHE PHE A . n A 1 56 LEU 56 49 49 LEU LEU A . n A 1 57 ARG 57 50 50 ARG ARG A . n A 1 58 ARG 58 51 51 ARG ARG A . n A 1 59 VAL 59 52 52 VAL VAL A . n A 1 60 GLN 60 53 53 GLN GLN A . n A 1 61 GLU 61 54 54 GLU GLU A . n A 1 62 LEU 62 55 55 LEU LEU A . n A 1 63 ARG 63 56 56 ARG ARG A . n A 1 64 ILE 64 57 57 ILE ILE A . n A 1 65 ASN 65 58 58 ASN ASN A . n A 1 66 MSE 66 59 59 MSE MET A . n A 1 67 GLN 67 60 60 GLN GLN A . n A 1 68 LYS 68 61 61 LYS LYS A . n A 1 69 ASN 69 62 62 ASN ASN A . n A 1 70 PHE 70 63 63 PHE PHE A . n A 1 71 ILE 71 64 64 ILE ILE A . n A 1 72 SER 72 65 65 SER SER A . n A 1 73 PHE 73 66 66 PHE PHE A . n A 1 74 ASP 74 67 67 ASP ASP A . n A 1 75 ALA 75 68 68 ALA ALA A . n A 1 76 TYR 76 69 69 TYR TYR A . n A 1 77 TYR 77 70 70 TYR TYR A . n A 1 78 ASN 78 71 71 ASN ASN A . n A 1 79 TYR 79 72 72 TYR TYR A . n A 1 80 LEU 80 73 73 LEU LEU A . n A 1 81 ASN 81 74 74 ASN ASN A . n A 1 82 ASN 82 75 75 ASN ASN A . n A 1 83 LEU 83 76 76 LEU LEU A . n A 1 84 VAL 84 77 77 VAL VAL A . n A 1 85 LEU 85 78 78 LEU LEU A . n A 1 86 ALA 86 79 79 ALA ALA A . n A 1 87 SER 87 80 80 SER SER A . n A 1 88 TYR 88 81 81 TYR TYR A . n A 1 89 ASN 89 82 82 ASN ASN A . n A 1 90 ARG 90 83 83 ARG ARG A . n A 1 91 CYS 91 84 84 CYS CYS A . n A 1 92 LYS 92 85 85 LYS LYS A . n A 1 93 GLN 93 86 86 GLN GLN A . n A 1 94 GLU 94 87 87 GLU GLU A . n A 1 95 LYS 95 88 88 LYS LYS A . n A 1 96 THR 96 89 89 THR THR A . n A 1 97 PHE 97 90 90 PHE PHE A . n A 1 98 ALA 98 91 91 ALA ALA A . n A 1 99 GLU 99 92 92 GLU GLU A . n A 1 100 SER 100 93 93 SER SER A . n A 1 101 THR 101 94 94 THR THR A . n A 1 102 ILE 102 95 95 ILE ILE A . n A 1 103 LYS 103 96 96 LYS LYS A . n A 1 104 ASN 104 97 97 ASN ASN A . n A 1 105 GLU 105 98 98 GLU GLU A . n A 1 106 LEU 106 99 99 LEU LEU A . n A 1 107 THR 107 100 100 THR THR A . n A 1 108 LEU 108 101 101 LEU LEU A . n A 1 109 GLY 109 102 102 GLY GLY A . n A 1 110 GLU 110 103 103 GLU GLU A . n A 1 111 PHE 111 104 104 PHE PHE A . n A 1 112 VAL 112 105 105 VAL VAL A . n A 1 113 ALA 113 106 106 ALA ALA A . n A 1 114 GLU 114 107 107 GLU GLU A . n A 1 115 ILE 115 108 108 ILE ILE A . n A 1 116 SER 116 109 109 SER SER A . n A 1 117 ASP 117 110 110 ASP ASP A . n A 1 118 ASN 118 111 111 ASN ASN A . n A 1 119 PHE 119 112 112 PHE PHE A . n A 1 120 ASN 120 113 113 ASN ASN A . n A 1 121 ASN 121 114 114 ASN ASN A . n A 1 122 PHE 122 115 115 PHE PHE A . n A 1 123 THR 123 116 116 THR THR A . n A 1 124 CYS 124 117 117 CYS CYS A . n A 1 125 ASP 125 118 118 ASP ASP A . n A 1 126 GLU 126 119 119 GLU GLU A . n A 1 127 VAL 127 120 120 VAL VAL A . n A 1 128 ALA 128 121 121 ALA ALA A . n A 1 129 ARG 129 122 122 ARG ARG A . n A 1 130 ILE 130 123 123 ILE ILE A . n A 1 131 SER 131 124 124 SER SER A . n A 1 132 ASP 132 125 125 ASP ASP A . n A 1 133 LEU 133 126 126 LEU LEU A . n A 1 134 VAL 134 127 127 VAL VAL A . n A 1 135 ALA 135 128 128 ALA ALA A . n A 1 136 SER 136 129 129 SER SER A . n A 1 137 TYR 137 130 130 TYR TYR A . n A 1 138 LEU 138 131 131 LEU LEU A . n A 1 139 PRO 139 132 132 PRO PRO A . n A 1 140 ARG 140 133 133 ARG ARG A . n A 1 141 GLU 141 134 134 GLU GLU A . n A 1 142 TYR 142 135 135 TYR TYR A . n A 1 143 LEU 143 136 136 LEU LEU A . n A 1 144 PRO 144 137 137 PRO PRO A . n A 1 145 PRO 145 138 138 PRO PRO A . n A 1 146 PHE 146 139 139 PHE PHE A . n A 1 147 ILE 147 140 140 ILE ILE A . n A 1 148 ASP 148 141 141 ASP ASP A . n A 1 149 GLY 149 142 142 GLY GLY A . n A 1 150 ASN 150 143 143 ASN ASN A . n A 1 151 MSE 151 144 144 MSE MET A . n A 1 152 MSE 152 145 145 MSE MET A . n A 1 153 GLY 153 146 146 GLY GLY A . n A 1 154 VAL 154 147 147 VAL VAL A . n A 1 155 ALA 155 148 148 ALA ALA A . n A 1 156 PHE 156 149 149 PHE PHE A . n A 1 157 GLN 157 150 150 GLN GLN A . n A 1 158 ILE 158 151 151 ILE ILE A . n A 1 159 LEU 159 152 152 LEU LEU A . n A 1 160 GLY 160 153 153 GLY GLY A . n A 1 161 ILE 161 154 154 ILE ILE A . n A 1 162 ASP 162 155 155 ASP ASP A . n A 1 163 ASP 163 156 156 ASP ASP A . n A 1 164 PHE 164 157 157 PHE PHE A . n A 1 165 GLY 165 158 158 GLY GLY A . n A 1 166 LYS 166 159 159 LYS LYS A . n A 1 167 LYS 167 160 160 LYS LYS A . n A 1 168 LEU 168 161 161 LEU LEU A . n A 1 169 ASN 169 162 162 ASN ASN A . n A 1 170 GLU 170 163 163 GLU GLU A . n A 1 171 ILE 171 164 164 ILE ILE A . n A 1 172 VAL 172 165 165 VAL VAL A . n A 1 173 GLN 173 166 166 GLN GLN A . n A 1 174 ASP 174 167 167 ASP ASP A . n A 1 175 ILE 175 168 168 ILE ILE A . n A 1 176 GLY 176 169 169 GLY GLY A . n A 1 177 THR 177 170 170 THR THR A . n A 1 178 LYS 178 171 171 LYS LYS A . n A 1 179 TYR 179 172 172 TYR TYR A . n A 1 180 ILE 180 173 173 ILE ILE A . n A 1 181 ILE 181 174 174 ILE ILE A . n A 1 182 LEU 182 175 175 LEU LEU A . n A 1 183 SER 183 176 176 SER SER A . n A 1 184 LYS 184 177 177 LYS LYS A . n A 1 185 ASN 185 178 178 ASN ASN A . n A 1 186 LYS 186 179 179 LYS LYS A . n A 1 187 THR 187 180 ? ? ? A . n A 1 188 TYR 188 181 ? ? ? A . n A 1 189 LEU 189 182 ? ? ? A . n A 1 190 THR 190 183 ? ? ? A . n A 1 191 SER 191 184 ? ? ? A . n A 1 192 LEU 192 185 ? ? ? A . n A 1 193 GLU 193 186 ? ? ? A . n A 1 194 ARG 194 187 ? ? ? A . n A 1 195 ALA 195 188 ? ? ? A . n A 1 196 LYS 196 189 ? ? ? A . n A 1 197 LEU 197 190 ? ? ? A . n A 1 198 ILE 198 191 ? ? ? A . n A 1 199 THR 199 192 ? ? ? A . n A 1 200 GLN 200 193 ? ? ? A . n A 1 201 LEU 201 194 ? ? ? A . n A 1 202 LYS 202 195 ? ? ? A . n A 1 203 LEU 203 196 ? ? ? A . n A 1 204 ASN 204 197 ? ? ? A . n A 1 205 LEU 205 198 ? ? ? A . n A 1 206 GLU 206 199 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 IPA 1 201 201 IPA ISO A . C 3 HOH 1 1001 1001 HOH HOH A . C 3 HOH 2 1002 1002 HOH HOH A . C 3 HOH 3 1003 1003 HOH HOH A . C 3 HOH 4 1004 1004 HOH HOH A . C 3 HOH 5 1005 1005 HOH HOH A . C 3 HOH 6 1006 1006 HOH HOH A . C 3 HOH 7 1007 1007 HOH HOH A . C 3 HOH 8 1008 1008 HOH HOH A . C 3 HOH 9 1009 1009 HOH HOH A . C 3 HOH 10 1010 1010 HOH HOH A . C 3 HOH 11 1011 1011 HOH HOH A . C 3 HOH 12 1012 1012 HOH HOH A . C 3 HOH 13 1013 1013 HOH HOH A . C 3 HOH 14 1015 1015 HOH HOH A . C 3 HOH 15 1016 1016 HOH HOH A . C 3 HOH 16 1017 1017 HOH HOH A . C 3 HOH 17 1018 1018 HOH HOH A . C 3 HOH 18 1019 1019 HOH HOH A . C 3 HOH 19 1020 1020 HOH HOH A . C 3 HOH 20 1021 1021 HOH HOH A . C 3 HOH 21 1023 1023 HOH HOH A . C 3 HOH 22 1024 1024 HOH HOH A . C 3 HOH 23 1025 1025 HOH HOH A . C 3 HOH 24 1026 1026 HOH HOH A . C 3 HOH 25 1027 1027 HOH HOH A . C 3 HOH 26 1028 1028 HOH HOH A . C 3 HOH 27 1029 1029 HOH HOH A . C 3 HOH 28 1030 1030 HOH HOH A . C 3 HOH 29 1031 1031 HOH HOH A . C 3 HOH 30 1032 1032 HOH HOH A . C 3 HOH 31 1033 1033 HOH HOH A . C 3 HOH 32 1034 1034 HOH HOH A . C 3 HOH 33 1035 1035 HOH HOH A . C 3 HOH 34 1036 1036 HOH HOH A . C 3 HOH 35 1037 1037 HOH HOH A . C 3 HOH 36 1040 1040 HOH HOH A . C 3 HOH 37 1041 1041 HOH HOH A . C 3 HOH 38 1042 1042 HOH HOH A . C 3 HOH 39 1045 1045 HOH HOH A . C 3 HOH 40 1046 1046 HOH HOH A . C 3 HOH 41 1047 1047 HOH HOH A . C 3 HOH 42 1048 1048 HOH HOH A . C 3 HOH 43 1052 1052 HOH HOH A . C 3 HOH 44 1053 1053 HOH HOH A . C 3 HOH 45 1056 1056 HOH HOH A . C 3 HOH 46 1057 1057 HOH HOH A . C 3 HOH 47 1058 1058 HOH HOH A . C 3 HOH 48 1060 1060 HOH HOH A . C 3 HOH 49 1062 1062 HOH HOH A . C 3 HOH 50 1063 1063 HOH HOH A . C 3 HOH 51 1064 1064 HOH HOH A . C 3 HOH 52 1065 1065 HOH HOH A . C 3 HOH 53 1066 1066 HOH HOH A . C 3 HOH 54 1067 1067 HOH HOH A . C 3 HOH 55 1069 1069 HOH HOH A . C 3 HOH 56 1070 1070 HOH HOH A . C 3 HOH 57 1071 1071 HOH HOH A . C 3 HOH 58 1072 1072 HOH HOH A . C 3 HOH 59 1073 1073 HOH HOH A . C 3 HOH 60 1074 1074 HOH HOH A . C 3 HOH 61 1075 1075 HOH HOH A . C 3 HOH 62 1078 1078 HOH HOH A . C 3 HOH 63 1080 1080 HOH HOH A . C 3 HOH 64 1081 1081 HOH HOH A . C 3 HOH 65 1082 1082 HOH HOH A . C 3 HOH 66 1085 1085 HOH HOH A . C 3 HOH 67 1086 1086 HOH HOH A . C 3 HOH 68 1087 1087 HOH HOH A . C 3 HOH 69 1088 1088 HOH HOH A . C 3 HOH 70 1091 1091 HOH HOH A . C 3 HOH 71 1096 1096 HOH HOH A . C 3 HOH 72 1099 1099 HOH HOH A . C 3 HOH 73 1100 1100 HOH HOH A . C 3 HOH 74 1101 1101 HOH HOH A . C 3 HOH 75 1104 1104 HOH HOH A . C 3 HOH 76 1106 1106 HOH HOH A . C 3 HOH 77 1107 1107 HOH HOH A . C 3 HOH 78 1110 1110 HOH HOH A . C 3 HOH 79 1111 1111 HOH HOH A . C 3 HOH 80 1113 1113 HOH HOH A . C 3 HOH 81 1114 1114 HOH HOH A . C 3 HOH 82 1115 1115 HOH HOH A . C 3 HOH 83 1116 1116 HOH HOH A . C 3 HOH 84 1117 1117 HOH HOH A . C 3 HOH 85 1118 1118 HOH HOH A . C 3 HOH 86 1120 1120 HOH HOH A . C 3 HOH 87 1123 1123 HOH HOH A . C 3 HOH 88 1124 1124 HOH HOH A . C 3 HOH 89 1125 1125 HOH HOH A . C 3 HOH 90 1126 1126 HOH HOH A . C 3 HOH 91 1127 1127 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 28 A MSE 21 ? MET SELENOMETHIONINE 2 A MSE 66 A MSE 59 ? MET SELENOMETHIONINE 3 A MSE 151 A MSE 144 ? MET SELENOMETHIONINE 4 A MSE 152 A MSE 145 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2004-07-27 2 'Structure model' 1 1 2008-04-29 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2021-10-27 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Database references' 4 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' struct_conn 3 4 'Structure model' struct_ref_seq_dif 4 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 4 4 'Structure model' '_struct_ref_seq_dif.details' 5 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 6 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 7 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal SHELX 'model building' . ? 1 SHELXL-97 refinement . ? 2 MOSFLM 'data reduction' . ? 3 CCP4 'data scaling' '(SCALA)' ? 4 CNS phasing . ? 5 # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 OD1 _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 ASP _pdbx_validate_close_contact.auth_seq_id_1 41 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 1065 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.17 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASN A 6 ? ? -49.37 158.19 2 1 LYS A 177 ? ? -39.24 104.31 3 1 ASN A 178 ? ? -39.68 165.43 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY -6 ? A GLY 1 2 1 Y 1 A SER -5 ? A SER 2 3 1 Y 1 A PRO -4 ? A PRO 3 4 1 Y 1 A ASN -3 ? A ASN 4 5 1 Y 1 A SER -2 ? A SER 5 6 1 Y 1 A ARG -1 ? A ARG 6 7 1 Y 1 A THR 180 ? A THR 187 8 1 Y 1 A TYR 181 ? A TYR 188 9 1 Y 1 A LEU 182 ? A LEU 189 10 1 Y 1 A THR 183 ? A THR 190 11 1 Y 1 A SER 184 ? A SER 191 12 1 Y 1 A LEU 185 ? A LEU 192 13 1 Y 1 A GLU 186 ? A GLU 193 14 1 Y 1 A ARG 187 ? A ARG 194 15 1 Y 1 A ALA 188 ? A ALA 195 16 1 Y 1 A LYS 189 ? A LYS 196 17 1 Y 1 A LEU 190 ? A LEU 197 18 1 Y 1 A ILE 191 ? A ILE 198 19 1 Y 1 A THR 192 ? A THR 199 20 1 Y 1 A GLN 193 ? A GLN 200 21 1 Y 1 A LEU 194 ? A LEU 201 22 1 Y 1 A LYS 195 ? A LYS 202 23 1 Y 1 A LEU 196 ? A LEU 203 24 1 Y 1 A ASN 197 ? A ASN 204 25 1 Y 1 A LEU 198 ? A LEU 205 26 1 Y 1 A GLU 199 ? A GLU 206 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'ISOPROPYL ALCOHOL' IPA 3 water HOH #