HEADER HYDROLASE (SERINE PROTEINASE) 11-AUG-72 1SBT TITLE ATOMIC COORDINATES FOR SUBTILISIN BPN (OR NOVO) COMPND MOL_ID: 1; COMPND 2 MOLECULE: SUBTILISIN BPN'; COMPND 3 CHAIN: A; COMPND 4 EC: 3.4.21.14; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS AMYLOLIQUEFACIENS; SOURCE 3 ORGANISM_TAXID: 1390 KEYWDS HYDROLASE (SERINE PROTEINASE) EXPDTA X-RAY DIFFRACTION AUTHOR R.A.ALDEN,J.J.BIRKTOFT,J.KRAUT,J.D.ROBERTUS,C.S.WRIGHT REVDAT 13 27-SEP-23 1SBT 1 REMARK SEQADV SCALE ATOM REVDAT 12 13-JUL-11 1SBT 1 VERSN REVDAT 11 24-FEB-09 1SBT 1 VERSN REVDAT 10 01-APR-03 1SBT 1 JRNL REVDAT 9 31-MAY-84 1SBT 1 REMARK REVDAT 8 27-JAN-84 1SBT 1 REMARK REVDAT 7 30-SEP-83 1SBT 1 REVDAT REVDAT 6 05-FEB-79 1SBT 1 SHEET REVDAT 5 22-MAY-78 1SBT 3 HETATM REVDAT 4 30-DEC-77 1SBT 1 REMARK REVDAT 3 01-NOV-77 1SBT 1 COMPND AUTHOR JRNL REMARK REVDAT 3 2 1 FORMUL REVDAT 2 28-MAR-77 1SBT 1 REMARK REVDAT 1 06-JAN-77 1SBT 0 JRNL AUTH R.A.ALDEN,J.J.BIRKTOFT,J.KRAUT,J.D.ROBERTUS,C.S.WRIGHT JRNL TITL ATOMIC COORDINATES FOR SUBTILISIN BPN' (OR NOVO). JRNL REF BIOCHEM.BIOPHYS.RES.COMMUN. V. 45 337 1971 JRNL REFN ISSN 0006-291X JRNL PMID 5160720 JRNL DOI 10.1016/0006-291X(71)90823-0 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH T.L.POULOS,R.A.ALDEN,S.T.FREER,J.J.BIRKTOFT,J.KRAUT REMARK 1 TITL POLYPEPTIDE HALOMETHYL KETONES BIND TO SERINE PROTEASES AS REMARK 1 TITL 2 ANALOGS OF THE TETRAHEDRAL INTERMEDIATE,X-RAY REMARK 1 TITL 3 CRYSTALLOGRAPHIC COMPARISON OF LYSINE-AND REMARK 1 TITL 4 PHENYLALANINE-POLYPEPTIDE CHLOROMETHYL KETONE-INHIBITED REMARK 1 TITL 5 SUBTILISIN REMARK 1 REF J.BIOL.CHEM. V. 251 1097 1976 REMARK 1 REFN ISSN 0021-9258 REMARK 1 REFERENCE 2 REMARK 1 AUTH D.A.MATTHEWS,R.A.ALDEN,J.J.BIRKTOFT,S.T.FREER,J.KRAUT REMARK 1 TITL X-RAY CRYSTALLOGRAPHIC STUDY OF BORONIC ACID ADDUCTS WITH REMARK 1 TITL 2 SUBTILISIN BPN(NOVO),A MODEL FOR THE CATALYTIC TRANSITION REMARK 1 TITL 3 STATE REMARK 1 REF J.BIOL.CHEM. V. 250 7120 1975 REMARK 1 REFN ISSN 0021-9258 REMARK 1 REFERENCE 3 REMARK 1 AUTH J.D.ROBERTUS,J.KRAUT,R.A.ALDEN,J.J.BIRKTOFT REMARK 1 TITL SUBTILISIN,A STEREOCHEMICAL MECHANISM INVOLVING REMARK 1 TITL 2 TRANSITION-STATE STABILIZATION REMARK 1 REF BIOCHEMISTRY V. 11 4293 1972 REMARK 1 REFN ISSN 0006-2960 REMARK 1 REFERENCE 4 REMARK 1 AUTH J.D.ROBERTUS,R.A.ALDEN,J.J.BIRKTOFT,J.KRAUT,J.C.POWERS, REMARK 1 AUTH 2 P.E.WILCOX REMARK 1 TITL AN X-RAY CRYSTALLOGRAPHIC STUDY OF THE BINDING OF PEPTIDE REMARK 1 TITL 2 CHLOROMETHYL KETONE INHIBITORS TO SUBTILISIN BPN REMARK 1 REF BIOCHEMISTRY V. 11 2439 1972 REMARK 1 REFN ISSN 0006-2960 REMARK 1 REFERENCE 5 REMARK 1 AUTH J.KRAUT,J.D.ROBERTUS,J.J.BIRKTOFT,R.A.ALDEN,P.E.WILCOX, REMARK 1 AUTH 2 J.C.POWERS REMARK 1 TITL THE AROMATIC SUBSTRATE BINDING SITE IN SUBTILISIN BPNAND ITS REMARK 1 TITL 2 RESEMBLANCE TO CHYMOTRYPSIN REMARK 1 REF COLD SPRING HARBOR V. 36 117 1972 REMARK 1 REF 2 SYMP.QUANT.BIOL. REMARK 1 REFN ISSN 0091-7451 REMARK 1 REFERENCE 6 REMARK 1 AUTH J.D.ROBERTUS,R.A.ALDEN,J.KRAUT REMARK 1 TITL ON THE IDENTITY OF SUBTILISINS BPNAND NOVO REMARK 1 REF BIOCHEM.BIOPHYS.RES.COMMUN. V. 42 334 1971 REMARK 1 REFN ISSN 0006-291X REMARK 1 REFERENCE 7 REMARK 1 AUTH R.A.ALDEN,C.S.WRIGHT,J.KRAUT REMARK 1 TITL A HYDROGEN-BOND NETWORK AT THE ACTIVE SITE OF SUBTILISIN BPN REMARK 1 REF PHILOS.TRANS.R.SOC.LONDON, V. 257 119 1970 REMARK 1 REF 2 SER.B REMARK 1 REFN ISSN 0080-4622 REMARK 1 REFERENCE 8 REMARK 1 AUTH C.S.WRIGHT,R.A.ALDEN,J.KRAUT REMARK 1 TITL STRUCTURE OF SUBTILISIN BPNAT 2.5 ANGSTROMS RESOLUTION REMARK 1 REF NATURE V. 221 235 1969 REMARK 1 REFN ISSN 0028-0836 REMARK 1 REFERENCE 9 REMARK 1 EDIT R.J.FELDMANN REMARK 1 REF ATLAS OF MACROMOLECULAR 177 1976 REMARK 1 REF 2 STRUCTURE ON MICROFICHE REMARK 1 PUBL TRACOR JITCO INC.,ROCKVILLE,MD. REMARK 1 REFN REMARK 1 REFERENCE 10 REMARK 1 EDIT M.O.DAYHOFF REMARK 1 REF ATLAS OF PROTEIN SEQUENCE V. 5 122 1972 REMARK 1 REF 2 AND STRUCTURE (DATA SECTION) REMARK 1 PUBL NATIONAL BIOMEDICAL RESEARCH FOUNDATION, SILVER SPRING,MD. REMARK 1 REFN REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NULL REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : NULL REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : NULL REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : NULL REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1938 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 17 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : NULL REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE FO-FC MAP INDICATES COORDINATE REMARK 3 ERRORS OF MORE THAN 1 ANGSTROM. THESE COORDINATES ARE THE OUTPUT REMARK 3 OF A REFINEMENT BY DIAMOND'S MODEL-BUILDING PROGRAM REMARK 4 REMARK 4 1SBT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000176307. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : NULL REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.54 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.07 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 33.35000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 27.20000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 33.35000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 27.20000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASN A 76 CG1 VAL A 270 1.02 REMARK 500 OD1 ASN A 76 CB VAL A 270 1.54 REMARK 500 OG1 THR A 22 OG SER A 87 1.62 REMARK 500 CB THR A 22 OG SER A 87 1.81 REMARK 500 ND2 ASN A 57 O ALA A 92 1.92 REMARK 500 CD2 LEU A 75 O ILE A 79 1.99 REMARK 500 N SER A 204 OD1 ASN A 218 2.00 REMARK 500 OH TYR A 6 O VAL A 203 2.12 REMARK 500 CE1 TYR A 104 O HOH A 281 2.12 REMARK 500 N THR A 255 O LEU A 267 2.16 REMARK 500 O VAL A 174 NH1 ARG A 247 2.17 REMARK 500 O HOH A 277 O HOH A 290 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 CG TYR A 6 OG SER A 161 4545 0.90 REMARK 500 CB SER A 18 OG SER A 162 3545 1.11 REMARK 500 CB TYR A 6 OG SER A 161 4545 1.26 REMARK 500 OE1 GLN A 185 CD LYS A 213 4555 1.37 REMARK 500 OG SER A 183 OE1 GLN A 271 2655 1.51 REMARK 500 CD2 TYR A 6 OG SER A 161 4545 1.54 REMARK 500 OG1 THR A 55 O ALA A 144 4546 1.55 REMARK 500 NE2 GLN A 185 NZ LYS A 213 4555 1.61 REMARK 500 OG SER A 18 OG SER A 162 3545 1.70 REMARK 500 CD GLN A 185 CE LYS A 213 4555 1.81 REMARK 500 CD GLN A 185 CD LYS A 213 4555 1.88 REMARK 500 CB GLN A 206 OH TYR A 262 4545 1.90 REMARK 500 CB TYR A 6 CB SER A 161 4545 1.97 REMARK 500 CG TYR A 6 CB SER A 161 4545 1.97 REMARK 500 CD GLN A 185 NZ LYS A 213 4555 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 VAL A 4 C PRO A 5 N -0.163 REMARK 500 TYR A 6 CG TYR A 6 CD2 0.169 REMARK 500 TYR A 6 CE1 TYR A 6 CZ 0.119 REMARK 500 TYR A 6 CE2 TYR A 6 CD2 -0.104 REMARK 500 GLY A 7 CA GLY A 7 C 0.192 REMARK 500 LYS A 12 C LYS A 12 O 0.131 REMARK 500 HIS A 17 CG HIS A 17 CD2 0.081 REMARK 500 HIS A 17 C HIS A 17 O 0.131 REMARK 500 GLN A 19 C GLN A 19 O 0.131 REMARK 500 TYR A 21 CB TYR A 21 CG 0.140 REMARK 500 SER A 24 CB SER A 24 OG 0.079 REMARK 500 VAL A 26 C VAL A 26 O 0.138 REMARK 500 VAL A 26 C LYS A 27 N 0.248 REMARK 500 LYS A 27 CB LYS A 27 CG 0.202 REMARK 500 SER A 33 CA SER A 33 CB -0.107 REMARK 500 GLY A 34 CA GLY A 34 C -0.158 REMARK 500 ILE A 35 N ILE A 35 CA 0.150 REMARK 500 ASP A 36 N ASP A 36 CA 0.172 REMARK 500 ASP A 36 C SER A 37 N 0.140 REMARK 500 SER A 38 CA SER A 38 C 0.198 REMARK 500 HIS A 39 C HIS A 39 O 0.116 REMARK 500 SER A 49 C SER A 49 O 0.185 REMARK 500 PRO A 52 C PRO A 52 O 0.132 REMARK 500 SER A 53 N SER A 53 CA 0.166 REMARK 500 SER A 53 CB SER A 53 OG 0.121 REMARK 500 GLU A 54 CD GLU A 54 OE2 0.082 REMARK 500 THR A 55 CA THR A 55 CB -0.184 REMARK 500 THR A 55 C THR A 55 O -0.161 REMARK 500 PRO A 56 C ASN A 57 N 0.181 REMARK 500 ASN A 57 N ASN A 57 CA -0.140 REMARK 500 ASN A 57 CG ASN A 57 ND2 0.292 REMARK 500 PHE A 58 CA PHE A 58 CB 0.144 REMARK 500 ASP A 60 N ASP A 60 CA -0.151 REMARK 500 ASP A 60 CA ASP A 60 CB 0.211 REMARK 500 ASN A 62 CG ASN A 62 ND2 -0.154 REMARK 500 HIS A 64 CG HIS A 64 ND1 -0.112 REMARK 500 GLY A 65 N GLY A 65 CA 0.125 REMARK 500 GLY A 65 CA GLY A 65 C 0.126 REMARK 500 GLY A 65 C GLY A 65 O -0.110 REMARK 500 THR A 66 CB THR A 66 OG1 -0.128 REMARK 500 HIS A 67 CB HIS A 67 CG -0.099 REMARK 500 HIS A 67 CG HIS A 67 CD2 0.092 REMARK 500 HIS A 67 CE1 HIS A 67 NE2 0.116 REMARK 500 HIS A 67 NE2 HIS A 67 CD2 -0.104 REMARK 500 THR A 71 CB THR A 71 OG1 -0.183 REMARK 500 THR A 71 C THR A 71 O 0.189 REMARK 500 VAL A 72 N VAL A 72 CA -0.140 REMARK 500 ASN A 76 N ASN A 76 CA 0.153 REMARK 500 ASN A 76 CB ASN A 76 CG 1.042 REMARK 500 ASN A 76 CG ASN A 76 OD1 12.354 REMARK 500 REMARK 500 THIS ENTRY HAS 250 BOND DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 5 C - N - CA ANGL. DEV. = 11.7 DEGREES REMARK 500 TYR A 6 CB - CG - CD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 TYR A 6 CG - CD2 - CE2 ANGL. DEV. = 5.2 DEGREES REMARK 500 GLY A 7 CA - C - O ANGL. DEV. = -12.5 DEGREES REMARK 500 GLY A 7 O - C - N ANGL. DEV. = 13.8 DEGREES REMARK 500 VAL A 8 CG1 - CB - CG2 ANGL. DEV. = -10.9 DEGREES REMARK 500 GLN A 10 O - C - N ANGL. DEV. = 11.0 DEGREES REMARK 500 ILE A 11 CA - CB - CG2 ANGL. DEV. = -12.8 DEGREES REMARK 500 LYS A 27 C - N - CA ANGL. DEV. = -22.4 DEGREES REMARK 500 VAL A 28 CB - CA - C ANGL. DEV. = 12.1 DEGREES REMARK 500 GLY A 34 CA - C - O ANGL. DEV. = 11.9 DEGREES REMARK 500 HIS A 39 CE1 - NE2 - CD2 ANGL. DEV. = 5.6 DEGREES REMARK 500 MET A 50 N - CA - CB ANGL. DEV. = -11.0 DEGREES REMARK 500 GLU A 54 OE1 - CD - OE2 ANGL. DEV. = -10.5 DEGREES REMARK 500 ASN A 57 N - CA - CB ANGL. DEV. = -11.1 DEGREES REMARK 500 PHE A 58 CB - CG - CD2 ANGL. DEV. = -7.0 DEGREES REMARK 500 PHE A 58 CB - CG - CD1 ANGL. DEV. = 9.2 DEGREES REMARK 500 ASP A 60 CB - CG - OD1 ANGL. DEV. = 8.1 DEGREES REMARK 500 ASP A 61 CB - CG - OD2 ANGL. DEV. = 9.1 DEGREES REMARK 500 ASN A 62 OD1 - CG - ND2 ANGL. DEV. = 14.9 DEGREES REMARK 500 ASN A 62 CB - CG - OD1 ANGL. DEV. = -13.0 DEGREES REMARK 500 SER A 63 CB - CA - C ANGL. DEV. = 18.0 DEGREES REMARK 500 SER A 63 N - CA - CB ANGL. DEV. = -12.3 DEGREES REMARK 500 HIS A 64 CB - CG - CD2 ANGL. DEV. = -12.4 DEGREES REMARK 500 GLY A 65 N - CA - C ANGL. DEV. = -20.2 DEGREES REMARK 500 THR A 66 CA - CB - CG2 ANGL. DEV. = -12.2 DEGREES REMARK 500 VAL A 68 CA - CB - CG1 ANGL. DEV. = -10.4 DEGREES REMARK 500 GLY A 70 O - C - N ANGL. DEV. = 9.6 DEGREES REMARK 500 THR A 71 CA - CB - CG2 ANGL. DEV. = -10.4 DEGREES REMARK 500 ALA A 74 N - CA - CB ANGL. DEV. = -16.5 DEGREES REMARK 500 LEU A 75 CB - CA - C ANGL. DEV. = -21.0 DEGREES REMARK 500 ASN A 76 OD1 - CG - ND2 ANGL. DEV. = -37.6 DEGREES REMARK 500 ASN A 76 CB - CG - OD1 ANGL. DEV. = 22.2 DEGREES REMARK 500 ASN A 77 O - C - N ANGL. DEV. = 10.0 DEGREES REMARK 500 SER A 78 CA - C - O ANGL. DEV. = -14.0 DEGREES REMARK 500 ILE A 79 N - CA - CB ANGL. DEV. = 28.9 DEGREES REMARK 500 VAL A 81 N - CA - C ANGL. DEV. = 17.4 DEGREES REMARK 500 LEU A 82 CB - CA - C ANGL. DEV. = -11.5 DEGREES REMARK 500 VAL A 84 CB - CA - C ANGL. DEV. = -18.6 DEGREES REMARK 500 VAL A 84 CA - CB - CG1 ANGL. DEV. = -12.4 DEGREES REMARK 500 ALA A 85 CB - CA - C ANGL. DEV. = 11.4 DEGREES REMARK 500 ALA A 85 N - CA - CB ANGL. DEV. = 8.6 DEGREES REMARK 500 SER A 88 N - CA - CB ANGL. DEV. = -9.4 DEGREES REMARK 500 SER A 88 CA - C - O ANGL. DEV. = 14.4 DEGREES REMARK 500 SER A 88 O - C - N ANGL. DEV. = -10.6 DEGREES REMARK 500 ALA A 89 CB - CA - C ANGL. DEV. = 18.6 DEGREES REMARK 500 ALA A 89 N - CA - C ANGL. DEV. = -16.9 DEGREES REMARK 500 LEU A 90 CB - CA - C ANGL. DEV. = 12.8 DEGREES REMARK 500 LEU A 90 N - CA - CB ANGL. DEV. = -13.2 DEGREES REMARK 500 TYR A 91 CG - CD1 - CE1 ANGL. DEV. = -5.0 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 178 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 12 42.58 100.48 REMARK 500 ASP A 32 -129.63 -148.54 REMARK 500 ILE A 35 105.37 172.94 REMARK 500 ALA A 48 163.29 164.00 REMARK 500 THR A 55 -89.43 -44.23 REMARK 500 SER A 63 -11.45 76.96 REMARK 500 ALA A 69 9.89 -43.87 REMARK 500 ALA A 73 58.53 -162.90 REMARK 500 LEU A 75 -175.21 21.04 REMARK 500 ASN A 76 78.16 -177.32 REMARK 500 ASN A 77 -136.36 -176.93 REMARK 500 VAL A 81 -127.64 -111.16 REMARK 500 LEU A 82 105.14 -164.63 REMARK 500 PRO A 86 -3.93 -53.93 REMARK 500 ALA A 99 -27.73 82.35 REMARK 500 GLU A 112 -76.77 -29.26 REMARK 500 TRP A 113 -31.31 -35.49 REMARK 500 SER A 125 48.64 -91.39 REMARK 500 SER A 132 139.01 164.17 REMARK 500 ASN A 155 52.69 -108.28 REMARK 500 GLU A 156 -149.41 -105.25 REMARK 500 THR A 159 98.89 -176.59 REMARK 500 SER A 162 -162.75 -75.78 REMARK 500 PRO A 172 -3.40 -55.62 REMARK 500 ASP A 181 -164.69 -103.33 REMARK 500 PRO A 201 96.52 -54.06 REMARK 500 PRO A 239 -3.59 -52.23 REMARK 500 THR A 253 -0.23 -141.79 REMARK 500 THR A 254 -172.65 -62.03 REMARK 500 ASP A 259 120.83 -15.61 REMARK 500 SER A 260 -38.57 -29.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 HIS A 39 0.08 SIDE CHAIN REMARK 500 ASN A 62 0.07 SIDE CHAIN REMARK 500 ASN A 76 0.18 SIDE CHAIN REMARK 500 ARG A 247 0.11 SIDE CHAIN REMARK 500 PHE A 261 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 GLN A 10 -12.37 REMARK 500 VAL A 44 11.21 REMARK 500 VAL A 51 -10.01 REMARK 500 PRO A 56 -13.33 REMARK 500 ASN A 62 -11.26 REMARK 500 SER A 78 -10.10 REMARK 500 GLY A 80 14.11 REMARK 500 VAL A 84 -20.20 REMARK 500 ASN A 109 -13.35 REMARK 500 LYS A 136 -14.99 REMARK 500 VAL A 147 -13.61 REMARK 500 GLY A 157 -12.32 REMARK 500 LEU A 196 10.23 REMARK 500 GLY A 266 -10.46 REMARK 500 REMARK 500 REMARK: NULL DBREF 1SBT A 1 275 UNP P00782 SUBT_BACAM 108 382 SEQADV 1SBT PRO A 56 UNP P00782 ASN 163 CONFLICT SEQADV 1SBT ASN A 57 UNP P00782 PRO 164 CONFLICT SEQADV 1SBT ASP A 61 UNP P00782 ASN 168 CONFLICT SEQADV 1SBT SER A 88 UNP P00782 ALA 195 CONFLICT SEQADV 1SBT ALA A 89 UNP P00782 SER 196 CONFLICT SEQADV 1SBT ASP A 98 UNP P00782 ALA 205 CONFLICT SEQADV 1SBT ALA A 99 UNP P00782 ASP 206 CONFLICT SEQADV 1SBT SER A 158 UNP P00782 THR 265 CONFLICT SEQADV 1SBT THR A 159 UNP P00782 SER 266 CONFLICT SEQADV 1SBT GLN A 251 UNP P00782 GLU 358 CONFLICT SEQRES 1 A 275 ALA GLN SER VAL PRO TYR GLY VAL SER GLN ILE LYS ALA SEQRES 2 A 275 PRO ALA LEU HIS SER GLN GLY TYR THR GLY SER ASN VAL SEQRES 3 A 275 LYS VAL ALA VAL ILE ASP SER GLY ILE ASP SER SER HIS SEQRES 4 A 275 PRO ASP LEU LYS VAL ALA GLY GLY ALA SER MET VAL PRO SEQRES 5 A 275 SER GLU THR PRO ASN PHE GLN ASP ASP ASN SER HIS GLY SEQRES 6 A 275 THR HIS VAL ALA GLY THR VAL ALA ALA LEU ASN ASN SER SEQRES 7 A 275 ILE GLY VAL LEU GLY VAL ALA PRO SER SER ALA LEU TYR SEQRES 8 A 275 ALA VAL LYS VAL LEU GLY ASP ALA GLY SER GLY GLN TYR SEQRES 9 A 275 SER TRP ILE ILE ASN GLY ILE GLU TRP ALA ILE ALA ASN SEQRES 10 A 275 ASN MET ASP VAL ILE ASN MET SER LEU GLY GLY PRO SER SEQRES 11 A 275 GLY SER ALA ALA LEU LYS ALA ALA VAL ASP LYS ALA VAL SEQRES 12 A 275 ALA SER GLY VAL VAL VAL VAL ALA ALA ALA GLY ASN GLU SEQRES 13 A 275 GLY SER THR GLY SER SER SER THR VAL GLY TYR PRO GLY SEQRES 14 A 275 LYS TYR PRO SER VAL ILE ALA VAL GLY ALA VAL ASP SER SEQRES 15 A 275 SER ASN GLN ARG ALA SER PHE SER SER VAL GLY PRO GLU SEQRES 16 A 275 LEU ASP VAL MET ALA PRO GLY VAL SER ILE GLN SER THR SEQRES 17 A 275 LEU PRO GLY ASN LYS TYR GLY ALA TYR ASN GLY THR SER SEQRES 18 A 275 MET ALA SER PRO HIS VAL ALA GLY ALA ALA ALA LEU ILE SEQRES 19 A 275 LEU SER LYS HIS PRO ASN TRP THR ASN THR GLN VAL ARG SEQRES 20 A 275 SER SER LEU GLN ASN THR THR THR LYS LEU GLY ASP SER SEQRES 21 A 275 PHE TYR TYR GLY LYS GLY LEU ILE ASN VAL GLN ALA ALA SEQRES 22 A 275 ALA GLN FORMUL 2 HOH *17(H2 O) HELIX 1 A PRO A 5 GLN A 10 1 6 HELIX 2 B PRO A 14 GLY A 20 1 7 HELIX 3 C HIS A 64 ALA A 73 1 10 HELIX 4 D GLN A 103 ASN A 117 1 15 HELIX 5 E SER A 132 SER A 145 1 14 HELIX 6 F ALA A 223 HIS A 238 1 16 HELIX 7 G THR A 242 ASN A 252 1 11 HELIX 8 H ASN A 269 GLN A 275 1 7 SHEET 1 S 5 ALA A 45 MET A 50 0 SHEET 2 S 5 ALA A 89 LYS A 94 1 SHEET 3 S 5 VAL A 28 ASP A 32 1 SHEET 4 S 5 ASP A 120 MET A 124 1 SHEET 5 S 5 VAL A 148 ALA A 152 1 CISPEP 1 TYR A 167 PRO A 168 0 0.25 CRYST1 66.700 54.400 62.900 90.00 91.90 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 8.47280 ORIGX2 0.000000 1.000000 0.000000 21.75456 ORIGX3 0.000000 0.000000 1.000000 10.39794 SCALE1 0.014993 0.000000 0.000497 0.00000 SCALE2 0.000000 0.018382 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015907 0.00000