HEADER BLOOD CLOTTING 13-FEB-04 1SDD TITLE CRYSTAL STRUCTURE OF BOVINE FACTOR VAI CAVEAT 1SDD NAG B 2187 HAS WRONG CHIRALITY AT ATOM C1 NAG B 2189 HAS CAVEAT 2 1SDD WRONG CHIRALITY AT ATOM C1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: COAGULATION FACTOR V; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: A1 DOMAIN (RESIDUES 29-305); COMPND 5 SYNONYM: ACTIVATED PROTEIN C COFACTOR; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: COAGULATION FACTOR V; COMPND 8 CHAIN: B; COMPND 9 FRAGMENT: LIGHT CHAIN (A3, C1, C2 DOMAINS, RESIDUES 1565-2211); COMPND 10 SYNONYM: ACTIVATED PROTEIN C COFACTOR SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BOS TAURUS; SOURCE 3 ORGANISM_COMMON: CATTLE; SOURCE 4 ORGANISM_TAXID: 9913; SOURCE 5 OTHER_DETAILS: PURIFIED FROM PLASMA; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: BOS TAURUS; SOURCE 8 ORGANISM_COMMON: CATTLE; SOURCE 9 ORGANISM_TAXID: 9913; SOURCE 10 OTHER_DETAILS: PURIFIED FROM PLASMA KEYWDS COAGULATION, COPPER-BINDING PROTEIN, COFACTOR, BLOOD CLOTTING EXPDTA X-RAY DIFFRACTION AUTHOR T.E.ADAMS,M.F.HOCKIN,K.G.MANN,S.J.EVERSE REVDAT 4 29-JUL-20 1SDD 1 CAVEAT COMPND REMARK HET REVDAT 4 2 1 HETNAM FORMUL LINK SITE REVDAT 4 3 1 ATOM REVDAT 3 13-JUL-11 1SDD 1 VERSN REVDAT 2 24-FEB-09 1SDD 1 VERSN REVDAT 1 29-JUN-04 1SDD 0 JRNL AUTH T.E.ADAMS,M.F.HOCKIN,K.G.MANN,S.J.EVERSE JRNL TITL THE CRYSTAL STRUCTURE OF ACTIVATED PROTEIN C-INACTIVATED JRNL TITL 2 BOVINE FACTOR VA: IMPLICATIONS FOR COFACTOR FUNCTION. JRNL REF PROC.NATL.ACAD.SCI.USA V. 101 8918 2004 JRNL REFN ISSN 0027-8424 JRNL PMID 15184653 JRNL DOI 10.1073/PNAS.0403072101 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 90.1 REMARK 3 NUMBER OF REFLECTIONS : 28745 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.252 REMARK 3 FREE R VALUE : 0.296 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 1098 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.90 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 76.40 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.3880 REMARK 3 BIN FREE R VALUE : 0.4460 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 72 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.035 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7010 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 72 REMARK 3 SOLVENT ATOMS : 189 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.45 REMARK 3 ESD FROM SIGMAA (A) : 0.55 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.56 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.63 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.019 REMARK 3 BOND ANGLES (DEGREES) : 1.940 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 25.56 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.190 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1SDD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-FEB-04. REMARK 100 THE DEPOSITION ID IS D_1000021614. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-MAR-02; 12-APR-01; 10-MAR-00; REMARK 200 09-MAR-00 REMARK 200 TEMPERATURE (KELVIN) : 100; 100; 100; 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 4 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y; Y; Y REMARK 200 RADIATION SOURCE : CHESS; NSLS; NSLS; NSLS REMARK 200 BEAMLINE : A1; X12C; X25; X25 REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL; NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M; M; M REMARK 200 WAVELENGTH OR RANGE (A) : 0.935; 0.9803, 1.0097, 1.0106; REMARK 200 1.100; 1.100 REMARK 200 MONOCHROMATOR : RH-COATED SI; CHANNEL-CUT REMARK 200 SI(111); CHANNEL-CUT SI(111); REMARK 200 CHANNEL-CUT SI(111) REMARK 200 OPTICS : NULL; NULL; NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; CCD; CCD; CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4; BRANDEIS - B1.3; REMARK 200 BRANDEIS - B4; BRANDEIS - B4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28745 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 88.8 REMARK 200 DATA REDUNDANCY : 4.200 REMARK 200 R MERGE (I) : 0.04900 REMARK 200 R SYM (I) : 0.05400 REMARK 200 FOR THE DATA SET : 7.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 80.8 REMARK 200 DATA REDUNDANCY IN SHELL : 2.00 REMARK 200 R MERGE FOR SHELL (I) : 0.20600 REMARK 200 R SYM FOR SHELL (I) : 0.30700 REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; MAD; SINGLE WAVELENGTH; REMARK 200 SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MIR + MAD REMARK 200 SOFTWARE USED: MLPHARE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.17 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG3350, MAGNESIUM CHLORIDE, CALCIUM REMARK 280 CHLORIDE, PH 7.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 285K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 31.68500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 114.60000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 43.28000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 114.60000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 31.68500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 43.28000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 4750 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 37640 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -25.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 TYR A 17 REMARK 465 ARG A 18 REMARK 465 PRO A 19 REMARK 465 GLU A 20 REMARK 465 SER A 21 REMARK 465 THR A 22 REMARK 465 HIS A 23 REMARK 465 LEU A 24 REMARK 465 SER A 25 REMARK 465 SER A 26 REMARK 465 LYS A 27 REMARK 465 PRO A 28 REMARK 465 PHE A 29 REMARK 465 GLU A 30 REMARK 465 HIS A 222 REMARK 465 ASP A 223 REMARK 465 HIS A 224 REMARK 465 ILE A 225 REMARK 465 SER A 226 REMARK 465 TRP A 227 REMARK 465 ALA A 268 REMARK 465 ASN A 269 REMARK 465 MET A 270 REMARK 465 THR A 271 REMARK 465 VAL A 272 REMARK 465 SER A 273 REMARK 465 PRO A 274 REMARK 465 GLU A 275 REMARK 465 ASP A 297 REMARK 465 ILE A 298 REMARK 465 LYS A 299 REMARK 465 ASN A 300 REMARK 465 CYS A 301 REMARK 465 ALA A 302 REMARK 465 LYS A 303 REMARK 465 LYS A 304 REMARK 465 THR A 305 REMARK 465 ARG A 306 REMARK 465 SER B 1537 REMARK 465 GLN B 1561 REMARK 465 SER B 1562 REMARK 465 ASP B 1563 REMARK 465 ASP B 1564 REMARK 465 VAL B 1565 REMARK 465 ASP B 1566 REMARK 465 TYR B 1567 REMARK 465 VAL B 1568 REMARK 465 TYR B 1636 REMARK 465 GLU B 1637 REMARK 465 LYS B 1638 REMARK 465 SER B 1639 REMARK 465 SER B 1640 REMARK 465 GLU B 1641 REMARK 465 GLY B 1642 REMARK 465 LYS B 1643 REMARK 465 THR B 1644 REMARK 465 TYR B 1645 REMARK 465 GLU B 1646 REMARK 465 ASP B 1647 REMARK 465 ASP B 1648 REMARK 465 SER B 1649 REMARK 465 PRO B 1650 REMARK 465 GLU B 1651 REMARK 465 TRP B 1652 REMARK 465 PHE B 1653 REMARK 465 LYS B 1654 REMARK 465 GLU B 1655 REMARK 465 ASP B 1656 REMARK 465 LYS B 1745 REMARK 465 LYS B 1746 REMARK 465 PRO B 1747 REMARK 465 THR B 1748 REMARK 465 ARG B 1749 REMARK 465 SER B 1750 REMARK 465 TRP B 1751 REMARK 465 ARG B 1752 REMARK 465 ARG B 1753 REMARK 465 ALA B 1754 REMARK 465 SER B 1755 REMARK 465 SER B 1756 REMARK 465 GLU B 1757 REMARK 465 VAL B 1758 REMARK 465 LYS B 1759 REMARK 465 TYR B 2183 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO B1838 C - N - CA ANGL. DEV. = 9.5 DEGREES REMARK 500 VAL B1847 N - CA - C ANGL. DEV. = -17.9 DEGREES REMARK 500 ARG B2014 N - CA - C ANGL. DEV. = -17.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 2 -172.85 -61.74 REMARK 500 TYR A 41 157.63 60.12 REMARK 500 ALA A 43 -105.79 32.34 REMARK 500 PHE A 45 49.51 77.20 REMARK 500 PRO A 50 176.19 -35.00 REMARK 500 ARG A 53 93.00 -59.07 REMARK 500 THR A 54 -135.99 63.52 REMARK 500 SER A 55 44.92 38.08 REMARK 500 PRO A 60 -126.22 -54.61 REMARK 500 THR A 61 90.76 178.52 REMARK 500 GLN A 87 72.57 -109.69 REMARK 500 GLU A 96 -76.69 -68.56 REMARK 500 SER A 101 86.72 -68.39 REMARK 500 MET A 110 48.62 -82.88 REMARK 500 ASP A 111 -11.69 -147.07 REMARK 500 PRO A 116 92.94 -50.38 REMARK 500 ILE A 126 106.19 -52.96 REMARK 500 HIS A 129 31.37 -76.12 REMARK 500 PRO A 132 157.94 -46.61 REMARK 500 THR A 133 -134.87 -89.27 REMARK 500 PRO A 137 159.40 -41.68 REMARK 500 TYR A 145 -175.63 -170.39 REMARK 500 VAL A 148 -27.22 -36.65 REMARK 500 ASN A 149 116.11 -165.72 REMARK 500 GLU A 152 -86.93 -74.93 REMARK 500 ASP A 153 -62.17 -17.69 REMARK 500 SER A 156 13.86 -64.98 REMARK 500 ILE A 159 165.29 165.73 REMARK 500 LYS A 177 -118.04 -86.45 REMARK 500 MET A 178 26.36 -59.45 REMARK 500 PHE A 179 -50.33 -133.02 REMARK 500 GLU A 180 142.97 39.68 REMARK 500 LYS A 181 46.80 75.20 REMARK 500 PHE A 187 90.47 -48.97 REMARK 500 LYS A 194 77.11 -113.41 REMARK 500 SER A 195 -137.58 -165.82 REMARK 500 SER A 200 96.95 -63.61 REMARK 500 MET A 203 79.65 -177.75 REMARK 500 TYR A 204 98.68 -62.93 REMARK 500 THR A 205 -157.62 -101.52 REMARK 500 VAL A 206 62.85 -165.19 REMARK 500 ASN A 207 21.08 103.87 REMARK 500 VAL A 210 -135.71 -78.25 REMARK 500 PRO A 215 91.78 -51.70 REMARK 500 ASP A 216 -156.38 -69.91 REMARK 500 ILE A 217 117.36 -168.07 REMARK 500 CYS A 220 44.68 -95.99 REMARK 500 SER A 233 7.54 174.66 REMARK 500 SER A 234 -38.92 57.14 REMARK 500 GLU A 237 145.97 -174.14 REMARK 500 REMARK 500 THIS ENTRY HAS 136 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR B1890 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A2184 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LYS A 93 O REMARK 620 2 GLU A 108 O 76.9 REMARK 620 3 ASP A 111 OD1 77.7 51.2 REMARK 620 4 ASP A 111 OD2 68.6 99.7 51.8 REMARK 620 5 ASP A 112 OD2 155.5 97.6 80.4 89.3 REMARK 620 6 ASP A 112 OD1 159.1 85.5 100.0 126.4 37.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU B2190 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B1802 ND1 REMARK 620 2 HIS B1804 NE2 89.7 REMARK 620 3 ASP B1844 OD1 103.6 101.7 REMARK 620 4 ASP B1844 OD2 158.6 87.1 56.6 REMARK 620 5 ASP B1844 CG 131.7 96.3 28.3 28.4 REMARK 620 N 1 2 3 4 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1CZV RELATED DB: PDB REMARK 900 RELATED ID: 1CZT RELATED DB: PDB REMARK 900 RELATED ID: 1CZS RELATED DB: PDB DBREF 1SDD A 1 306 UNP Q28107 FA5_BOVIN 29 334 DBREF 1SDD B 1537 2183 UNP Q28107 FA5_BOVIN 1565 2211 SEQRES 1 A 306 ALA LYS LEU ARG GLN PHE TYR VAL ALA ALA GLN SER ILE SEQRES 2 A 306 ARG TRP ASN TYR ARG PRO GLU SER THR HIS LEU SER SER SEQRES 3 A 306 LYS PRO PHE GLU THR SER PHE LYS LYS ILE VAL TYR ARG SEQRES 4 A 306 GLU TYR GLU ALA TYR PHE GLN LYS GLU LYS PRO GLN SER SEQRES 5 A 306 ARG THR SER GLY LEU LEU GLY PRO THR LEU TYR ALA GLU SEQRES 6 A 306 VAL GLY ASP ILE MET LYS VAL HIS PHE LYS ASN LYS ALA SEQRES 7 A 306 HIS LYS PRO LEU SER ILE HIS ALA GLN GLY ILE LYS TYR SEQRES 8 A 306 SER LYS PHE SER GLU GLY ALA SER TYR SER ASP HIS THR SEQRES 9 A 306 LEU PRO MET GLU LYS MET ASP ASP ALA VAL ALA PRO GLY SEQRES 10 A 306 GLN GLU TYR THR TYR GLU TRP ILE ILE SER GLU HIS SER SEQRES 11 A 306 GLY PRO THR HIS ASP ASP PRO PRO CYS LEU THR HIS ILE SEQRES 12 A 306 TYR TYR SER TYR VAL ASN LEU VAL GLU ASP PHE ASN SER SEQRES 13 A 306 GLY LEU ILE GLY PRO LEU LEU ILE CYS LYS LYS GLY THR SEQRES 14 A 306 LEU THR GLU ASP GLY THR GLN LYS MET PHE GLU LYS GLN SEQRES 15 A 306 HIS VAL LEU MET PHE ALA VAL PHE ASP GLU SER LYS SER SEQRES 16 A 306 TRP ASN GLN THR SER SER LEU MET TYR THR VAL ASN GLY SEQRES 17 A 306 TYR VAL ASN GLY THR MET PRO ASP ILE THR VAL CYS ALA SEQRES 18 A 306 HIS ASP HIS ILE SER TRP HIS LEU ILE GLY MET SER SER SEQRES 19 A 306 GLY PRO GLU LEU PHE SER ILE HIS PHE ASN GLY GLN VAL SEQRES 20 A 306 LEU GLU GLN ASN HIS HIS LYS ILE SER ALA ILE THR LEU SEQRES 21 A 306 VAL SER ALA THR SER THR THR ALA ASN MET THR VAL SER SEQRES 22 A 306 PRO GLU GLY ARG TRP THR ILE ALA SER LEU ILE PRO ARG SEQRES 23 A 306 HIS PHE GLN ALA GLY MET GLN ALA TYR ILE ASP ILE LYS SEQRES 24 A 306 ASN CYS ALA LYS LYS THR ARG SEQRES 1 B 647 SER ASN THR GLY ASN ARG LYS TYR TYR TYR ILE ALA ALA SEQRES 2 B 647 GLU GLU ILE SER TRP ASP TYR SER LYS PHE VAL GLN SER SEQRES 3 B 647 ASP ASP VAL ASP TYR VAL PRO GLU ASP THR VAL TYR LYS SEQRES 4 B 647 LYS VAL VAL PHE ARG LYS TYR LEU ASP SER THR PHE THR SEQRES 5 B 647 LYS LEU ASP PRO GLN GLY GLU TYR GLU GLU HIS LEU GLY SEQRES 6 B 647 ILE LEU GLY PRO VAL ILE ARG ALA GLU VAL ASP ASP VAL SEQRES 7 B 647 ILE GLN VAL ARG PHE LYS ASN LEU ALA SER ARG PRO TYR SEQRES 8 B 647 SER LEU HIS ALA HIS GLY LEU SER TYR GLU LYS SER SER SEQRES 9 B 647 GLU GLY LYS THR TYR GLU ASP ASP SER PRO GLU TRP PHE SEQRES 10 B 647 LYS GLU ASP ASN ALA ILE GLN PRO ASN LYS THR TYR THR SEQRES 11 B 647 TYR VAL TRP HIS ALA THR THR ARG SER GLY PRO GLU ASN SEQRES 12 B 647 PRO GLY SER ALA CYS ARG ALA TRP ALA TYR TYR SER ALA SEQRES 13 B 647 VAL ASN PRO GLU LYS ASP ILE HIS SER GLY LEU ILE GLY SEQRES 14 B 647 PRO LEU LEU ILE CYS ARG LYS GLY THR LEU ASP LYS GLU SEQRES 15 B 647 THR ASN MET PRO VAL ASP MET ARG GLU PHE VAL LEU LEU SEQRES 16 B 647 PHE MET VAL PHE ASP GLU LYS LYS SER TRP TYR TYR ASP SEQRES 17 B 647 LYS LYS PRO THR ARG SER TRP ARG ARG ALA SER SER GLU SEQRES 18 B 647 VAL LYS ASN SER HIS GLU PHE HIS ALA ILE ASN GLY MET SEQRES 19 B 647 ILE TYR ASN LEU PRO GLY LEU ARG MET TYR GLU GLN GLU SEQRES 20 B 647 TRP VAL ARG LEU HIS LEU LEU ASN LEU GLY GLY SER ARG SEQRES 21 B 647 ASP ILE HIS VAL VAL HIS PHE HIS GLY GLN THR LEU LEU SEQRES 22 B 647 GLU ASN GLY THR GLN GLN HIS GLN LEU GLY VAL TRP PRO SEQRES 23 B 647 LEU LEU PRO GLY SER PHE LYS THR LEU GLU MET LYS ALA SEQRES 24 B 647 SER LYS PRO GLY TRP TRP LEU LEU ASP THR GLU VAL GLY SEQRES 25 B 647 GLU ILE GLN ARG ALA GLY MET GLN THR PRO PHE LEU ILE SEQRES 26 B 647 VAL ASP ARG GLU CYS LYS MET PRO MET GLY LEU SER THR SEQRES 27 B 647 GLY LEU ILE ALA ASP SER GLN ILE GLN ALA SER GLU PHE SEQRES 28 B 647 TRP GLY TYR TRP GLU PRO LYS LEU ALA ARG LEU ASN ASN SEQRES 29 B 647 GLY GLY SER TYR ASN ALA TRP ILE ALA GLU LYS LEU SER SEQRES 30 B 647 THR GLU PHE ASN PRO GLU PRO TRP ILE GLN VAL ASP MET SEQRES 31 B 647 GLN LYS GLU VAL LEU LEU THR GLY ILE GLN THR GLN GLY SEQRES 32 B 647 ALA LYS HIS TYR LEU LYS PRO TYR TYR THR THR GLU PHE SEQRES 33 B 647 CYS VAL ALA TYR SER LEU ASP ARG LYS ASN TRP ARG ILE SEQRES 34 B 647 PHE LYS GLY ASN SER THR ARG ASN VAL MET TYR PHE GLY SEQRES 35 B 647 GLY ASN SER ASP ALA SER THR ILE LYS GLU ASN GLN ILE SEQRES 36 B 647 ASP PRO PRO VAL VAL ALA ARG TYR ILE ARG ILE SER PRO SEQRES 37 B 647 THR GLY SER TYR ASN LYS PRO ALA LEU ARG LEU GLU LEU SEQRES 38 B 647 GLN GLY CYS GLU VAL ASN GLY CYS SER THR PRO LEU GLY SEQRES 39 B 647 MET GLU SER GLY LYS ILE GLU ASN LYS GLN ILE THR ALA SEQRES 40 B 647 SER SER PHE LYS LYS SER TRP TRP GLY ASN TYR TRP GLU SEQRES 41 B 647 PRO PHE LEU ALA ARG LEU ASN ALA GLN GLY ARG VAL ASN SEQRES 42 B 647 ALA TRP GLN ALA LYS ALA ASN ASN ASN ASN GLN TRP LEU SEQRES 43 B 647 GLN ILE ASP LEU LEU LYS ILE LYS LYS ILE THR ALA ILE SEQRES 44 B 647 VAL THR GLN GLY CYS LYS SER LEU SER SER GLU MET TYR SEQRES 45 B 647 VAL LYS SER TYR THR ILE HIS TYR SER ASP GLN GLY THR SEQRES 46 B 647 ASP TRP LYS PRO TYR ARG GLU LYS SER SER MET VAL ASP SEQRES 47 B 647 LYS ILE PHE GLU GLY ASN ASN ASN VAL ARG GLY HIS VAL SEQRES 48 B 647 LYS ASN PHE PHE ASN PRO PRO ILE ILE SER ARG PHE ILE SEQRES 49 B 647 ARG ILE ILE PRO LYS THR TRP ASN GLN SER ILE ALA LEU SEQRES 50 B 647 ARG LEU GLU LEU PHE GLY CYS ASP MET TYR MODRES 1SDD ASN A 197 ASN GLYCOSYLATION SITE MODRES 1SDD ASN A 211 ASN GLYCOSYLATION SITE MODRES 1SDD ASN B 1811 ASN GLYCOSYLATION SITE MODRES 1SDD ASN B 1662 ASN GLYCOSYLATION SITE MODRES 1SDD ASN B 1969 ASN GLYCOSYLATION SITE HET NAG A2185 14 HET NAG A2186 14 HET CA A2184 1 HET NAG B2187 14 HET NAG B2188 14 HET NAG B2189 14 HET CU B2190 1 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM CA CALCIUM ION HETNAM CU COPPER (II) ION FORMUL 3 NAG 5(C8 H15 N O6) FORMUL 5 CA CA 2+ FORMUL 9 CU CU 2+ FORMUL 10 HOH *189(H2 O) HELIX 1 1 LEU A 105 MET A 110 1 6 HELIX 2 2 SER A 127 GLY A 131 5 5 HELIX 3 3 LEU A 150 SER A 156 1 7 HELIX 4 4 HIS A 287 GLY A 291 5 5 HELIX 5 5 GLU B 1597 GLY B 1601 5 5 HELIX 6 6 ASN B 1694 HIS B 1700 1 7 HELIX 7 7 LYS B 1738 SER B 1740 5 3 HELIX 8 8 VAL B 1847 ARG B 1852 1 6 HELIX 9 9 ALA B 1878 SER B 1880 5 3 HELIX 10 10 GLU B 1892 ALA B 1896 5 5 HELIX 11 11 GLU B 2056 ALA B 2060 5 5 SHEET 1 A 4 GLN A 5 PHE A 6 0 SHEET 2 A 4 ILE A 69 ASN A 76 1 O HIS A 73 N PHE A 6 SHEET 3 A 4 ALA A 9 TRP A 15 1 N ALA A 10 O LYS A 75 SHEET 4 A 4 PHE A 33 ARG A 39 -1 O LYS A 35 N ILE A 13 SHEET 1 B 3 GLN A 5 PHE A 6 0 SHEET 2 B 3 ILE A 69 ASN A 76 1 O HIS A 73 N PHE A 6 SHEET 3 B 3 GLU A 119 ILE A 125 -1 O TYR A 120 N PHE A 74 SHEET 1 C 4 LEU A 62 GLU A 65 0 SHEET 2 C 4 GLY A 160 CYS A 165 1 O CYS A 165 N ALA A 64 SHEET 3 C 4 CYS A 139 TYR A 145 -1 N HIS A 142 O LEU A 162 SHEET 4 C 4 HIS A 85 GLN A 87 -1 N HIS A 85 O TYR A 145 SHEET 1 D 2 VAL A 189 ASP A 191 0 SHEET 2 D 2 LEU A 202 TYR A 204 -1 O MET A 203 N PHE A 190 SHEET 1 E 2 LEU A 238 PHE A 239 0 SHEET 2 E 2 LEU A 260 VAL A 261 -1 O LEU A 260 N PHE A 239 SHEET 1 F 2 GLU A 249 GLN A 250 0 SHEET 2 F 2 HIS A 253 LYS A 254 -1 O HIS A 253 N GLN A 250 SHEET 1 G 4 VAL B1573 TYR B1582 0 SHEET 2 G 4 ARG B1542 ASP B1555 -1 N ALA B1548 O ARG B1580 SHEET 3 G 4 VAL B1614 PHE B1619 1 O ARG B1618 N TYR B1545 SHEET 4 G 4 TYR B1665 THR B1666 -1 O TYR B1665 N PHE B1619 SHEET 1 H 4 VAL B1573 TYR B1582 0 SHEET 2 H 4 ARG B1542 ASP B1555 -1 N ALA B1548 O ARG B1580 SHEET 3 H 4 VAL B1614 PHE B1619 1 O ARG B1618 N TYR B1545 SHEET 4 H 4 TRP B1669 HIS B1670 -1 O TRP B1669 N ILE B1615 SHEET 1 I 4 ILE B1607 GLU B1610 0 SHEET 2 I 4 ILE B1704 CYS B1710 1 O LEU B1708 N ILE B1607 SHEET 3 I 4 CYS B1684 TYR B1690 -1 N ARG B1685 O ILE B1709 SHEET 4 I 4 HIS B1630 HIS B1632 -1 N HIS B1630 O TYR B1690 SHEET 1 J 4 GLU B1763 ILE B1767 0 SHEET 2 J 4 GLU B1727 ASP B1736 -1 N PHE B1735 O PHE B1764 SHEET 3 J 4 TRP B1784 ASN B1791 1 O HIS B1788 N PHE B1728 SHEET 4 J 4 SER B1827 LYS B1834 -1 O LYS B1829 N LEU B1789 SHEET 1 K 5 ARG B1778 TYR B1780 0 SHEET 2 K 5 GLN B1856 VAL B1862 1 O VAL B1862 N MET B1779 SHEET 3 K 5 GLY B1839 ASP B1844 -1 N TRP B1841 O PHE B1859 SHEET 4 K 5 HIS B1799 PHE B1803 -1 N HIS B1802 O ASP B1844 SHEET 5 K 5 TRP B1821 LEU B1823 -1 O LEU B1823 N HIS B1799 SHEET 1 L 2 LEU B1808 GLU B1810 0 SHEET 2 L 2 HIS B1816 LEU B1818 -1 O HIS B1816 N GLU B1810 SHEET 1 M14 MET B1868 PRO B1869 0 SHEET 2 M14 ALA B2012 CYS B2020 -1 O GLY B2019 N MET B1868 SHEET 3 M14 TRP B1907 ILE B1908 -1 N TRP B1907 O LEU B2013 SHEET 4 M14 ALA B2012 CYS B2020 -1 O LEU B2013 N TRP B1907 SHEET 5 M14 ILE B1922 GLN B1938 -1 N GLN B1936 O GLU B2016 SHEET 6 M14 ILE B1882 ALA B1884 -1 N GLN B1883 O GLN B1923 SHEET 7 M14 ILE B1922 GLN B1938 -1 O GLN B1923 N GLN B1883 SHEET 8 M14 LYS B1987 TYR B2008 -1 O ILE B2002 N ILE B1922 SHEET 9 M14 PRO B1946 SER B1957 -1 N ALA B1955 O ARG B2001 SHEET 10 M14 ALA B1940 LYS B1941 -1 N ALA B1940 O TYR B1947 SHEET 11 M14 PRO B1946 SER B1957 -1 O TYR B1947 N ALA B1940 SHEET 12 M14 ARG B1964 ILE B1965 -1 O ARG B1964 N TYR B1956 SHEET 13 M14 PRO B1946 SER B1957 -1 N TYR B1956 O ARG B1964 SHEET 14 M14 PHE B1977 GLY B1978 -1 O PHE B1977 N PHE B1952 SHEET 1 N 4 ILE B2041 ALA B2043 0 SHEET 2 N 4 LEU B2082 GLN B2098 -1 O GLN B2083 N THR B2042 SHEET 3 N 4 ALA B2172 CYS B2180 -1 O PHE B2178 N THR B2093 SHEET 4 N 4 TRP B2071 GLN B2072 -1 N TRP B2071 O LEU B2173 SHEET 1 O 5 ILE B2041 ALA B2043 0 SHEET 2 O 5 LEU B2082 GLN B2098 -1 O GLN B2083 N THR B2042 SHEET 3 O 5 VAL B2147 ILE B2162 -1 O ILE B2155 N ILE B2092 SHEET 4 O 5 ILE B2114 SER B2117 -1 N SER B2117 O PHE B2159 SHEET 5 O 5 LYS B2124 PRO B2125 -1 O LYS B2124 N TYR B2116 SHEET 1 P 2 LYS B2048 SER B2049 0 SHEET 2 P 2 ASN B2053 TYR B2054 -1 O ASN B2053 N SER B2049 SHEET 1 Q 3 CYS B2100 SER B2102 0 SHEET 2 Q 3 SER B2105 TYR B2112 -1 O SER B2105 N SER B2102 SHEET 3 Q 3 PHE B2137 GLU B2138 -1 O PHE B2137 N TYR B2112 SHEET 1 R 3 CYS B2100 SER B2102 0 SHEET 2 R 3 SER B2105 TYR B2112 -1 O SER B2105 N SER B2102 SHEET 3 R 3 THR B2166 ASN B2168 -1 O THR B2166 N SER B2111 SSBOND 1 CYS A 139 CYS A 165 1555 1555 2.03 SSBOND 2 CYS B 1684 CYS B 1710 1555 1555 2.03 SSBOND 3 CYS B 1866 CYS B 2020 1555 1555 2.04 SSBOND 4 CYS B 2025 CYS B 2180 1555 1555 2.05 LINK ND2 ASN A 197 C1 NAG A2185 1555 1555 1.45 LINK ND2 ASN A 211 C1 NAG A2186 1555 1555 1.45 LINK ND2 ASN B1662 C1 NAG B2187 1555 1555 1.46 LINK ND2 ASN B1811 C1 NAG B2188 1555 1555 1.45 LINK ND2 ASN B1969 C1 NAG B2189 1555 1555 1.45 LINK O LYS A 93 CA CA A2184 1555 1555 2.25 LINK O GLU A 108 CA CA A2184 1555 1555 2.97 LINK OD1 ASP A 111 CA CA A2184 1555 1555 2.26 LINK OD2 ASP A 111 CA CA A2184 1555 1555 2.69 LINK OD2 ASP A 112 CA CA A2184 1555 1555 1.97 LINK OD1 ASP A 112 CA CA A2184 1555 1555 3.39 LINK ND1 HIS B1802 CU CU B2190 1555 1555 2.28 LINK NE2 HIS B1804 CU CU B2190 1555 1555 2.63 LINK OD1 ASP B1844 CU CU B2190 1555 1555 2.21 LINK OD2 ASP B1844 CU CU B2190 1555 1555 2.40 LINK CG ASP B1844 CU CU B2190 1555 1555 2.63 CRYST1 63.370 86.560 229.200 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015780 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011553 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004363 0.00000