data_1SL4 # _entry.id 1SL4 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.329 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 1SL4 RCSB RCSB021806 WWPDB D_1000021806 # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1SL4 _pdbx_database_status.recvd_initial_deposition_date 2004-03-05 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Guo, Y.' 1 'Feinberg, H.' 2 'Conroy, E.' 3 'Mitchell, D.A.' 4 'Alvarez, R.' 5 'Blixt, O.' 6 'Taylor, M.E.' 7 'Weis, W.I.' 8 'Drickamer, K.' 9 # _citation.id primary _citation.title ;Structural basis for distinct ligand-binding and targeting properties of the receptors DC-SIGN and DC-SIGNR ; _citation.journal_abbrev Nat.Struct.Mol.Biol. _citation.journal_volume 11 _citation.page_first 591 _citation.page_last 598 _citation.year 2004 _citation.journal_id_ASTM ? _citation.country US _citation.journal_id_ISSN 1545-9993 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 15195147 _citation.pdbx_database_id_DOI 10.1038/nsmb784 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Guo, Y.' 1 ? primary 'Feinberg, H.' 2 ? primary 'Conroy, E.' 3 ? primary 'Mitchell, D.A.' 4 ? primary 'Alvarez, R.' 5 ? primary 'Blixt, O.' 6 ? primary 'Taylor, M.E.' 7 ? primary 'Weis, W.I.' 8 ? primary 'Drickamer, K.' 9 ? # _cell.entry_id 1SL4 _cell.length_a 55.66 _cell.length_b 55.66 _cell.length_c 53.33 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1SL4 _symmetry.space_group_name_H-M 'P 43' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 78 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'mDC-SIGN1B type I isoform' 17746.582 1 ? ? ? ? 2 branched man 'alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]alpha-D-mannopyranose-(1-6)-alpha-D-mannopyranose' 666.578 1 ? ? ? ? 3 non-polymer syn 'CALCIUM ION' 40.078 3 ? ? ? ? 4 water nat water 18.015 152 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;ERLCHPCPWEWTFFQGNCYFMSNSQRNWHDSITACKEVGAQLVVIKSAEEQNFLQLQSSRSNRFTWMGLSDLNQEGTWQW VDGSPLLPSFKQYWNRGEPNNVGEEDCAEFSGNGWNDDKCNLAKFWICKKSAASCSRDEEQFLSPAPATPNPPPA ; _entity_poly.pdbx_seq_one_letter_code_can ;ERLCHPCPWEWTFFQGNCYFMSNSQRNWHDSITACKEVGAQLVVIKSAEEQNFLQLQSSRSNRFTWMGLSDLNQEGTWQW VDGSPLLPSFKQYWNRGEPNNVGEEDCAEFSGNGWNDDKCNLAKFWICKKSAASCSRDEEQFLSPAPATPNPPPA ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLU n 1 2 ARG n 1 3 LEU n 1 4 CYS n 1 5 HIS n 1 6 PRO n 1 7 CYS n 1 8 PRO n 1 9 TRP n 1 10 GLU n 1 11 TRP n 1 12 THR n 1 13 PHE n 1 14 PHE n 1 15 GLN n 1 16 GLY n 1 17 ASN n 1 18 CYS n 1 19 TYR n 1 20 PHE n 1 21 MET n 1 22 SER n 1 23 ASN n 1 24 SER n 1 25 GLN n 1 26 ARG n 1 27 ASN n 1 28 TRP n 1 29 HIS n 1 30 ASP n 1 31 SER n 1 32 ILE n 1 33 THR n 1 34 ALA n 1 35 CYS n 1 36 LYS n 1 37 GLU n 1 38 VAL n 1 39 GLY n 1 40 ALA n 1 41 GLN n 1 42 LEU n 1 43 VAL n 1 44 VAL n 1 45 ILE n 1 46 LYS n 1 47 SER n 1 48 ALA n 1 49 GLU n 1 50 GLU n 1 51 GLN n 1 52 ASN n 1 53 PHE n 1 54 LEU n 1 55 GLN n 1 56 LEU n 1 57 GLN n 1 58 SER n 1 59 SER n 1 60 ARG n 1 61 SER n 1 62 ASN n 1 63 ARG n 1 64 PHE n 1 65 THR n 1 66 TRP n 1 67 MET n 1 68 GLY n 1 69 LEU n 1 70 SER n 1 71 ASP n 1 72 LEU n 1 73 ASN n 1 74 GLN n 1 75 GLU n 1 76 GLY n 1 77 THR n 1 78 TRP n 1 79 GLN n 1 80 TRP n 1 81 VAL n 1 82 ASP n 1 83 GLY n 1 84 SER n 1 85 PRO n 1 86 LEU n 1 87 LEU n 1 88 PRO n 1 89 SER n 1 90 PHE n 1 91 LYS n 1 92 GLN n 1 93 TYR n 1 94 TRP n 1 95 ASN n 1 96 ARG n 1 97 GLY n 1 98 GLU n 1 99 PRO n 1 100 ASN n 1 101 ASN n 1 102 VAL n 1 103 GLY n 1 104 GLU n 1 105 GLU n 1 106 ASP n 1 107 CYS n 1 108 ALA n 1 109 GLU n 1 110 PHE n 1 111 SER n 1 112 GLY n 1 113 ASN n 1 114 GLY n 1 115 TRP n 1 116 ASN n 1 117 ASP n 1 118 ASP n 1 119 LYS n 1 120 CYS n 1 121 ASN n 1 122 LEU n 1 123 ALA n 1 124 LYS n 1 125 PHE n 1 126 TRP n 1 127 ILE n 1 128 CYS n 1 129 LYS n 1 130 LYS n 1 131 SER n 1 132 ALA n 1 133 ALA n 1 134 SER n 1 135 CYS n 1 136 SER n 1 137 ARG n 1 138 ASP n 1 139 GLU n 1 140 GLU n 1 141 GLN n 1 142 PHE n 1 143 LEU n 1 144 SER n 1 145 PRO n 1 146 ALA n 1 147 PRO n 1 148 ALA n 1 149 THR n 1 150 PRO n 1 151 ASN n 1 152 PRO n 1 153 PRO n 1 154 PRO n 1 155 ALA n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line BL21/DE3 _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name GB _struct_ref.db_code AAK91854 _struct_ref.pdbx_db_accession 15281089 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;ERLCHPCPWEWTFFQGNCYFMSNSQRNWHDSITACKEVGAQLVVIKSAEEQNFLQLQSSRSNRFTWMGLSDLNQEGTWQW VDGSPLLPSFKQYWNRGEPNNVGEEDCAEFSGNGWNDDKCNLAKFWICKKSAASCSRDEEQFLSPAPATPNPPPA ; _struct_ref.pdbx_align_begin 250 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1SL4 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 155 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 15281089 _struct_ref_seq.db_align_beg 250 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 404 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 250 _struct_ref_seq.pdbx_auth_seq_align_end 404 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CA non-polymer . 'CALCIUM ION' ? 'Ca 2' 40.078 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MAN 'D-saccharide, alpha linking' . alpha-D-mannopyranose ? 'C6 H12 O6' 180.156 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1SL4 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 49.75 _exptl_crystal.description ? _exptl_crystal.density_Matthews 2.47 _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.pdbx_details ;20% PEG 400, 0.1M Tris pH 7.0.,Protein solution: 10 mg/ml protein, 5mM CaCl2, 10 mM oligosaccharide., VAPOR DIFFUSION, HANGING DROP, temperature 298K ; _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type ADSC _diffrn_detector.pdbx_collection_date 2003-05-13 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Double crystal' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97949 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ALS BEAMLINE 8.3.1' _diffrn_source.pdbx_synchrotron_site ALS _diffrn_source.pdbx_synchrotron_beamline 8.3.1 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.97949 # _reflns.entry_id 1SL4 _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 53.45 _reflns.d_resolution_high 1.55 _reflns.number_obs 23776 _reflns.number_all 23779 _reflns.percent_possible_obs 100.0 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.062 _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate 23.3 _reflns.pdbx_redundancy 9.9 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.55 _reflns_shell.d_res_low 1.59 _reflns_shell.percent_possible_all 99.8 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 0.239 _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy 4.3 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 1757 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 1SL4 _refine.ls_number_reflns_obs 23752 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF 981050.85 _refine.pdbx_data_cutoff_low_absF 0.000000 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 38.51 _refine.ls_d_res_high 1.55 _refine.ls_percent_reflns_obs 99.8 _refine.ls_R_factor_obs ? _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.223 _refine.ls_R_factor_R_free 0.255 _refine.ls_R_factor_R_free_error 0.007 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.1 _refine.ls_number_reflns_R_free 1219 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 24.1 _refine.aniso_B[1][1] 0.44 _refine.aniso_B[2][2] 0.44 _refine.aniso_B[3][3] -0.88 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.424647 _refine.solvent_model_param_bsol 54.7314 _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 1SL4 _refine_analyze.Luzzati_coordinate_error_obs 0.22 _refine_analyze.Luzzati_sigma_a_obs 0.18 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.25 _refine_analyze.Luzzati_sigma_a_free 0.18 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1148 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 48 _refine_hist.number_atoms_solvent 152 _refine_hist.number_atoms_total 1348 _refine_hist.d_res_high 1.55 _refine_hist.d_res_low 38.51 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.005 ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.2 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 23.8 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 0.79 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it 1.32 1.50 ? ? 'X-RAY DIFFRACTION' ? c_mcangle_it 2.05 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scbond_it 1.92 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scangle_it 2.87 2.50 ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 1.55 _refine_ls_shell.d_res_low 1.65 _refine_ls_shell.number_reflns_R_work 3725 _refine_ls_shell.R_factor_R_work 0.325 _refine_ls_shell.percent_reflns_obs 99.9 _refine_ls_shell.R_factor_R_free 0.328 _refine_ls_shell.R_factor_R_free_error 0.022 _refine_ls_shell.percent_reflns_R_free 5.7 _refine_ls_shell.number_reflns_R_free 224 _refine_ls_shell.number_reflns_obs 3949 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.R_factor_all ? # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 PROTEIN_REP.PARAM PROTEIN.TOP 'X-RAY DIFFRACTION' 2 ION.PARAM PROTEIN_BREAK.TOP 'X-RAY DIFFRACTION' 3 CARBOHYDRATE.PARAM WATER.TOP 'X-RAY DIFFRACTION' 4 WATER_REP.PARAM CARBOHYDRATE.TOP 'X-RAY DIFFRACTION' 5 ? ION.TOP 'X-RAY DIFFRACTION' # _struct.entry_id 1SL4 _struct.title 'Crystal Structure of DC-SIGN carbohydrate recognition domain complexed with Man4' _struct.pdbx_descriptor 'mDC-SIGN1B type I isoform' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1SL4 _struct_keywords.pdbx_keywords 'SUGAR BINDING PROTEIN' _struct_keywords.text 'DC-SIGN, C-TYPE LECTIN, SUGAR BINDING PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 3 ? F N N 4 ? # _struct_biol.id 1 _struct_biol.pdbx_parent_biol_id ? _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASN A 27 ? VAL A 38 ? ASN A 276 VAL A 287 1 ? 12 HELX_P HELX_P2 2 SER A 47 ? ASN A 62 ? SER A 296 ASN A 311 1 ? 16 HELX_P HELX_P3 3 PHE A 90 ? TRP A 94 ? PHE A 339 TRP A 343 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 4 SG ? ? ? 1_555 A CYS 135 SG A ? A CYS 253 A CYS 384 1_555 ? ? ? ? ? ? ? 2.030 ? ? disulf2 disulf ? ? A CYS 4 SG ? ? ? 1_555 A CYS 135 SG B ? A CYS 253 A CYS 384 1_555 ? ? ? ? ? ? ? 2.031 ? ? disulf3 disulf ? ? A CYS 7 SG A ? ? 1_555 A CYS 18 SG ? ? A CYS 256 A CYS 267 1_555 ? ? ? ? ? ? ? 2.032 ? ? disulf4 disulf ? ? A CYS 7 SG B ? ? 1_555 A CYS 18 SG ? ? A CYS 256 A CYS 267 1_555 ? ? ? ? ? ? ? 2.032 ? ? disulf5 disulf ? ? A CYS 35 SG ? ? ? 1_555 A CYS 128 SG ? ? A CYS 284 A CYS 377 1_555 ? ? ? ? ? ? ? 2.048 ? ? disulf6 disulf ? ? A CYS 107 SG ? ? ? 1_555 A CYS 120 SG A ? A CYS 356 A CYS 369 1_555 ? ? ? ? ? ? ? 2.030 ? ? disulf7 disulf ? ? A CYS 107 SG ? ? ? 1_555 A CYS 120 SG B ? A CYS 356 A CYS 369 1_555 ? ? ? ? ? ? ? 2.027 ? ? covale1 covale both ? B MAN . O6 ? ? ? 1_555 B MAN . C1 ? ? B MAN 1 B MAN 2 1_555 ? ? ? ? ? ? ? 1.399 ? ? covale2 covale both ? B MAN . O3 ? ? ? 1_555 B MAN . C1 ? ? B MAN 2 B MAN 3 1_555 ? ? ? ? ? ? ? 1.401 ? ? covale3 covale both ? B MAN . O6 ? ? ? 1_555 B MAN . C1 ? ? B MAN 2 B MAN 4 1_555 ? ? ? ? ? ? ? 1.409 ? ? metalc1 metalc ? ? A ASP 71 OD1 ? ? ? 1_555 C CA . CA ? ? A ASP 320 A CA 405 1_555 ? ? ? ? ? ? ? 2.601 ? ? metalc2 metalc ? ? A ASP 71 OD2 ? ? ? 1_555 C CA . CA ? ? A ASP 320 A CA 405 1_555 ? ? ? ? ? ? ? 2.502 ? ? metalc3 metalc ? ? A GLU 75 OE1 ? ? ? 1_555 C CA . CA ? ? A GLU 324 A CA 405 1_555 ? ? ? ? ? ? ? 2.486 ? ? metalc4 metalc ? ? A GLU 75 OE2 ? ? ? 1_555 C CA . CA ? ? A GLU 324 A CA 405 1_555 ? ? ? ? ? ? ? 2.510 ? ? metalc5 metalc ? ? A GLU 75 OE1 ? ? ? 1_555 E CA . CA ? ? A GLU 324 A CA 407 1_555 ? ? ? ? ? ? ? 2.347 ? ? metalc6 metalc ? ? A GLU 98 OE1 ? ? ? 1_555 D CA . CA ? ? A GLU 347 A CA 406 1_555 ? ? ? ? ? ? ? 2.507 ? ? metalc7 metalc ? ? A ASN 100 OD1 ? ? ? 1_555 D CA . CA ? ? A ASN 349 A CA 406 1_555 ? ? ? ? ? ? ? 2.374 ? ? metalc8 metalc ? ? A ASN 101 OD1 ? ? ? 1_555 C CA . CA ? ? A ASN 350 A CA 405 1_555 ? ? ? ? ? ? ? 2.470 ? ? metalc9 metalc ? ? A GLU 104 OE2 ? ? ? 1_555 E CA . CA ? ? A GLU 353 A CA 407 1_555 ? ? ? ? ? ? ? 2.124 ? ? metalc10 metalc ? ? A GLU 105 O ? ? ? 1_555 C CA . CA ? ? A GLU 354 A CA 405 1_555 ? ? ? ? ? ? ? 2.421 ? ? metalc11 metalc ? ? A GLU 105 OE1 ? ? ? 1_555 D CA . CA ? ? A GLU 354 A CA 406 1_555 ? ? ? ? ? ? ? 2.552 ? ? metalc12 metalc ? ? A ASP 106 OD1 ? ? ? 1_555 C CA . CA ? ? A ASP 355 A CA 405 1_555 ? ? ? ? ? ? ? 2.402 ? ? metalc13 metalc ? ? A ASP 106 OD2 ? ? ? 1_555 E CA . CA ? ? A ASP 355 A CA 407 1_555 ? ? ? ? ? ? ? 2.563 ? ? metalc14 metalc ? ? A ASP 106 OD1 ? ? ? 1_555 E CA . CA ? ? A ASP 355 A CA 407 1_555 ? ? ? ? ? ? ? 2.572 ? ? metalc15 metalc ? ? A ASN 116 OD1 ? ? ? 1_555 D CA . CA ? ? A ASN 365 A CA 406 1_555 ? ? ? ? ? ? ? 2.393 ? ? metalc16 metalc ? ? A ASP 117 O ? ? ? 1_555 D CA . CA ? ? A ASP 366 A CA 406 1_555 ? ? ? ? ? ? ? 2.496 ? ? metalc17 metalc ? ? A ASP 117 OD1 ? ? ? 1_555 D CA . CA ? ? A ASP 366 A CA 406 1_555 ? ? ? ? ? ? ? 2.353 ? ? metalc18 metalc ? ? C CA . CA ? ? ? 1_555 F HOH . O ? ? A CA 405 A HOH 412 1_555 ? ? ? ? ? ? ? 2.401 ? ? metalc19 metalc ? ? D CA . CA ? ? ? 1_555 B MAN . O3 ? ? A CA 406 B MAN 3 1_555 ? ? ? ? ? ? ? 2.524 ? ? metalc20 metalc ? ? D CA . CA ? ? ? 1_555 B MAN . O4 ? ? A CA 406 B MAN 3 1_555 ? ? ? ? ? ? ? 2.569 ? ? metalc21 metalc ? ? E CA . CA ? ? ? 1_555 F HOH . O ? ? A CA 407 A HOH 409 1_555 ? ? ? ? ? ? ? 2.419 ? ? metalc22 metalc ? ? E CA . CA ? ? ? 1_555 F HOH . O ? ? A CA 407 A HOH 410 1_555 ? ? ? ? ? ? ? 2.377 ? ? metalc23 metalc ? ? E CA . CA ? ? ? 1_555 F HOH . O ? ? A CA 407 A HOH 411 1_555 ? ? ? ? ? ? ? 2.322 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? metalc ? ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id GLU _struct_mon_prot_cis.label_seq_id 98 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id GLU _struct_mon_prot_cis.auth_seq_id 347 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 99 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 348 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle -0.38 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 5 ? B ? 5 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? parallel A 4 5 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 THR A 12 ? PHE A 14 ? THR A 261 PHE A 263 A 2 ASN A 17 ? MET A 21 ? ASN A 266 MET A 270 A 3 PHE A 125 ? SER A 131 ? PHE A 374 SER A 380 A 4 THR A 65 ? SER A 70 ? THR A 314 SER A 319 A 5 GLN A 79 ? TRP A 80 ? GLN A 328 TRP A 329 B 1 GLN A 41 ? LEU A 42 ? GLN A 290 LEU A 291 B 2 PHE A 125 ? SER A 131 ? PHE A 374 SER A 380 B 3 THR A 65 ? SER A 70 ? THR A 314 SER A 319 B 4 CYS A 107 ? SER A 111 ? CYS A 356 SER A 360 B 5 GLY A 114 ? ASP A 118 ? GLY A 363 ASP A 367 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N THR A 12 ? N THR A 261 O TYR A 19 ? O TYR A 268 A 2 3 N CYS A 18 ? N CYS A 267 O LYS A 130 ? O LYS A 379 A 3 4 O PHE A 125 ? O PHE A 374 N TRP A 66 ? N TRP A 315 A 4 5 N SER A 70 ? N SER A 319 O GLN A 79 ? O GLN A 328 B 1 2 N GLN A 41 ? N GLN A 290 O LYS A 129 ? O LYS A 378 B 2 3 O PHE A 125 ? O PHE A 374 N TRP A 66 ? N TRP A 315 B 3 4 N THR A 65 ? N THR A 314 O PHE A 110 ? O PHE A 359 B 4 5 N SER A 111 ? N SER A 360 O GLY A 114 ? O GLY A 363 # _database_PDB_matrix.entry_id 1SL4 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1SL4 _atom_sites.fract_transf_matrix[1][1] 0.017965 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.017965 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.018751 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CA N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLU 1 250 ? ? ? A . n A 1 2 ARG 2 251 ? ? ? A . n A 1 3 LEU 3 252 ? ? ? A . n A 1 4 CYS 4 253 253 CYS CYS A . n A 1 5 HIS 5 254 254 HIS HIS A . n A 1 6 PRO 6 255 255 PRO PRO A . n A 1 7 CYS 7 256 256 CYS CYS A . n A 1 8 PRO 8 257 257 PRO PRO A . n A 1 9 TRP 9 258 258 TRP TRP A . n A 1 10 GLU 10 259 259 GLU GLU A . n A 1 11 TRP 11 260 260 TRP TRP A . n A 1 12 THR 12 261 261 THR THR A . n A 1 13 PHE 13 262 262 PHE PHE A . n A 1 14 PHE 14 263 263 PHE PHE A . n A 1 15 GLN 15 264 264 GLN GLN A . n A 1 16 GLY 16 265 265 GLY GLY A . n A 1 17 ASN 17 266 266 ASN ASN A . n A 1 18 CYS 18 267 267 CYS CYS A . n A 1 19 TYR 19 268 268 TYR TYR A . n A 1 20 PHE 20 269 269 PHE PHE A . n A 1 21 MET 21 270 270 MET MET A . n A 1 22 SER 22 271 271 SER SER A . n A 1 23 ASN 23 272 272 ASN ASN A . n A 1 24 SER 24 273 273 SER SER A . n A 1 25 GLN 25 274 274 GLN GLN A . n A 1 26 ARG 26 275 275 ARG ARG A . n A 1 27 ASN 27 276 276 ASN ASN A . n A 1 28 TRP 28 277 277 TRP TRP A . n A 1 29 HIS 29 278 278 HIS HIS A . n A 1 30 ASP 30 279 279 ASP ASP A . n A 1 31 SER 31 280 280 SER SER A . n A 1 32 ILE 32 281 281 ILE ILE A . n A 1 33 THR 33 282 282 THR THR A . n A 1 34 ALA 34 283 283 ALA ALA A . n A 1 35 CYS 35 284 284 CYS CYS A . n A 1 36 LYS 36 285 285 LYS LYS A . n A 1 37 GLU 37 286 286 GLU GLU A . n A 1 38 VAL 38 287 287 VAL VAL A . n A 1 39 GLY 39 288 288 GLY GLY A . n A 1 40 ALA 40 289 289 ALA ALA A . n A 1 41 GLN 41 290 290 GLN GLN A . n A 1 42 LEU 42 291 291 LEU LEU A . n A 1 43 VAL 43 292 292 VAL VAL A . n A 1 44 VAL 44 293 293 VAL VAL A . n A 1 45 ILE 45 294 294 ILE ILE A . n A 1 46 LYS 46 295 295 LYS LYS A . n A 1 47 SER 47 296 296 SER SER A . n A 1 48 ALA 48 297 297 ALA ALA A . n A 1 49 GLU 49 298 298 GLU GLU A . n A 1 50 GLU 50 299 299 GLU GLU A . n A 1 51 GLN 51 300 300 GLN GLN A . n A 1 52 ASN 52 301 301 ASN ASN A . n A 1 53 PHE 53 302 302 PHE PHE A . n A 1 54 LEU 54 303 303 LEU LEU A . n A 1 55 GLN 55 304 304 GLN GLN A . n A 1 56 LEU 56 305 305 LEU LEU A . n A 1 57 GLN 57 306 306 GLN GLN A . n A 1 58 SER 58 307 307 SER SER A . n A 1 59 SER 59 308 308 SER SER A . n A 1 60 ARG 60 309 309 ARG ARG A . n A 1 61 SER 61 310 310 SER SER A . n A 1 62 ASN 62 311 311 ASN ASN A . n A 1 63 ARG 63 312 312 ARG ARG A . n A 1 64 PHE 64 313 313 PHE PHE A . n A 1 65 THR 65 314 314 THR THR A . n A 1 66 TRP 66 315 315 TRP TRP A . n A 1 67 MET 67 316 316 MET MET A . n A 1 68 GLY 68 317 317 GLY GLY A . n A 1 69 LEU 69 318 318 LEU LEU A . n A 1 70 SER 70 319 319 SER SER A . n A 1 71 ASP 71 320 320 ASP ASP A . n A 1 72 LEU 72 321 321 LEU LEU A . n A 1 73 ASN 73 322 322 ASN ASN A . n A 1 74 GLN 74 323 323 GLN GLN A . n A 1 75 GLU 75 324 324 GLU GLU A . n A 1 76 GLY 76 325 325 GLY GLY A . n A 1 77 THR 77 326 326 THR THR A . n A 1 78 TRP 78 327 327 TRP TRP A . n A 1 79 GLN 79 328 328 GLN GLN A . n A 1 80 TRP 80 329 329 TRP TRP A . n A 1 81 VAL 81 330 330 VAL VAL A . n A 1 82 ASP 82 331 331 ASP ASP A . n A 1 83 GLY 83 332 332 GLY GLY A . n A 1 84 SER 84 333 333 SER SER A . n A 1 85 PRO 85 334 334 PRO PRO A . n A 1 86 LEU 86 335 335 LEU LEU A . n A 1 87 LEU 87 336 336 LEU LEU A . n A 1 88 PRO 88 337 337 PRO PRO A . n A 1 89 SER 89 338 338 SER SER A . n A 1 90 PHE 90 339 339 PHE PHE A . n A 1 91 LYS 91 340 340 LYS LYS A . n A 1 92 GLN 92 341 341 GLN GLN A . n A 1 93 TYR 93 342 342 TYR TYR A . n A 1 94 TRP 94 343 343 TRP TRP A . n A 1 95 ASN 95 344 344 ASN ASN A . n A 1 96 ARG 96 345 345 ARG ARG A . n A 1 97 GLY 97 346 346 GLY GLY A . n A 1 98 GLU 98 347 347 GLU GLU A . n A 1 99 PRO 99 348 348 PRO PRO A . n A 1 100 ASN 100 349 349 ASN ASN A . n A 1 101 ASN 101 350 350 ASN ASN A . n A 1 102 VAL 102 351 351 VAL VAL A . n A 1 103 GLY 103 352 352 GLY GLY A . n A 1 104 GLU 104 353 353 GLU GLU A . n A 1 105 GLU 105 354 354 GLU GLU A . n A 1 106 ASP 106 355 355 ASP ASP A . n A 1 107 CYS 107 356 356 CYS CYS A . n A 1 108 ALA 108 357 357 ALA ALA A . n A 1 109 GLU 109 358 358 GLU GLU A . n A 1 110 PHE 110 359 359 PHE PHE A . n A 1 111 SER 111 360 360 SER SER A . n A 1 112 GLY 112 361 361 GLY GLY A . n A 1 113 ASN 113 362 362 ASN ASN A . n A 1 114 GLY 114 363 363 GLY GLY A . n A 1 115 TRP 115 364 364 TRP TRP A . n A 1 116 ASN 116 365 365 ASN ASN A . n A 1 117 ASP 117 366 366 ASP ASP A . n A 1 118 ASP 118 367 367 ASP ASP A . n A 1 119 LYS 119 368 368 LYS LYS A . n A 1 120 CYS 120 369 369 CYS CYS A . n A 1 121 ASN 121 370 370 ASN ASN A . n A 1 122 LEU 122 371 371 LEU LEU A . n A 1 123 ALA 123 372 372 ALA ALA A . n A 1 124 LYS 124 373 373 LYS LYS A . n A 1 125 PHE 125 374 374 PHE PHE A . n A 1 126 TRP 126 375 375 TRP TRP A . n A 1 127 ILE 127 376 376 ILE ILE A . n A 1 128 CYS 128 377 377 CYS CYS A . n A 1 129 LYS 129 378 378 LYS LYS A . n A 1 130 LYS 130 379 379 LYS LYS A . n A 1 131 SER 131 380 380 SER SER A . n A 1 132 ALA 132 381 381 ALA ALA A . n A 1 133 ALA 133 382 382 ALA ALA A . n A 1 134 SER 134 383 383 SER SER A . n A 1 135 CYS 135 384 384 CYS CYS A . n A 1 136 SER 136 385 ? ? ? A . n A 1 137 ARG 137 386 ? ? ? A . n A 1 138 ASP 138 387 ? ? ? A . n A 1 139 GLU 139 388 ? ? ? A . n A 1 140 GLU 140 389 ? ? ? A . n A 1 141 GLN 141 390 ? ? ? A . n A 1 142 PHE 142 391 ? ? ? A . n A 1 143 LEU 143 392 ? ? ? A . n A 1 144 SER 144 393 ? ? ? A . n A 1 145 PRO 145 394 ? ? ? A . n A 1 146 ALA 146 395 ? ? ? A . n A 1 147 PRO 147 396 ? ? ? A . n A 1 148 ALA 148 397 ? ? ? A . n A 1 149 THR 149 398 ? ? ? A . n A 1 150 PRO 150 399 ? ? ? A . n A 1 151 ASN 151 400 ? ? ? A . n A 1 152 PRO 152 401 ? ? ? A . n A 1 153 PRO 153 402 ? ? ? A . n A 1 154 PRO 154 403 ? ? ? A . n A 1 155 ALA 155 404 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 CA 1 405 1 CA CA2 A . D 3 CA 1 406 2 CA CA2 A . E 3 CA 1 407 3 CA CA2 A . F 4 HOH 1 408 1 HOH TIP A . F 4 HOH 2 409 2 HOH TIP A . F 4 HOH 3 410 3 HOH TIP A . F 4 HOH 4 411 4 HOH TIP A . F 4 HOH 5 412 5 HOH TIP A . F 4 HOH 6 413 6 HOH TIP A . F 4 HOH 7 414 7 HOH TIP A . F 4 HOH 8 415 8 HOH TIP A . F 4 HOH 9 416 9 HOH TIP A . F 4 HOH 10 417 10 HOH TIP A . F 4 HOH 11 418 11 HOH TIP A . F 4 HOH 12 419 12 HOH TIP A . F 4 HOH 13 420 13 HOH TIP A . F 4 HOH 14 421 14 HOH TIP A . F 4 HOH 15 422 15 HOH TIP A . F 4 HOH 16 423 16 HOH TIP A . F 4 HOH 17 424 17 HOH TIP A . F 4 HOH 18 425 18 HOH TIP A . F 4 HOH 19 426 19 HOH TIP A . F 4 HOH 20 427 20 HOH TIP A . F 4 HOH 21 428 21 HOH TIP A . F 4 HOH 22 429 22 HOH TIP A . F 4 HOH 23 430 23 HOH TIP A . F 4 HOH 24 431 24 HOH TIP A . F 4 HOH 25 432 25 HOH TIP A . F 4 HOH 26 433 26 HOH TIP A . F 4 HOH 27 434 27 HOH TIP A . F 4 HOH 28 435 28 HOH TIP A . F 4 HOH 29 436 29 HOH TIP A . F 4 HOH 30 437 30 HOH TIP A . F 4 HOH 31 438 31 HOH TIP A . F 4 HOH 32 439 32 HOH TIP A . F 4 HOH 33 440 33 HOH TIP A . F 4 HOH 34 441 34 HOH TIP A . F 4 HOH 35 442 35 HOH TIP A . F 4 HOH 36 443 36 HOH TIP A . F 4 HOH 37 444 37 HOH TIP A . F 4 HOH 38 445 38 HOH TIP A . F 4 HOH 39 446 39 HOH TIP A . F 4 HOH 40 447 40 HOH TIP A . F 4 HOH 41 448 41 HOH TIP A . F 4 HOH 42 449 42 HOH TIP A . F 4 HOH 43 450 43 HOH TIP A . F 4 HOH 44 451 44 HOH TIP A . F 4 HOH 45 452 45 HOH TIP A . F 4 HOH 46 453 46 HOH TIP A . F 4 HOH 47 454 47 HOH TIP A . F 4 HOH 48 455 48 HOH TIP A . F 4 HOH 49 456 49 HOH TIP A . F 4 HOH 50 457 50 HOH TIP A . F 4 HOH 51 458 51 HOH TIP A . F 4 HOH 52 459 52 HOH TIP A . F 4 HOH 53 460 53 HOH TIP A . F 4 HOH 54 461 54 HOH TIP A . F 4 HOH 55 462 55 HOH TIP A . F 4 HOH 56 463 56 HOH TIP A . F 4 HOH 57 464 57 HOH TIP A . F 4 HOH 58 465 58 HOH TIP A . F 4 HOH 59 466 59 HOH TIP A . F 4 HOH 60 467 60 HOH TIP A . F 4 HOH 61 468 61 HOH TIP A . F 4 HOH 62 469 62 HOH TIP A . F 4 HOH 63 470 63 HOH TIP A . F 4 HOH 64 471 64 HOH TIP A . F 4 HOH 65 472 65 HOH TIP A . F 4 HOH 66 473 66 HOH TIP A . F 4 HOH 67 474 67 HOH TIP A . F 4 HOH 68 475 68 HOH TIP A . F 4 HOH 69 476 69 HOH TIP A . F 4 HOH 70 477 70 HOH TIP A . F 4 HOH 71 478 71 HOH TIP A . F 4 HOH 72 479 72 HOH TIP A . F 4 HOH 73 480 73 HOH TIP A . F 4 HOH 74 481 74 HOH TIP A . F 4 HOH 75 482 75 HOH TIP A . F 4 HOH 76 483 76 HOH TIP A . F 4 HOH 77 484 77 HOH TIP A . F 4 HOH 78 485 78 HOH TIP A . F 4 HOH 79 486 79 HOH TIP A . F 4 HOH 80 487 80 HOH TIP A . F 4 HOH 81 488 81 HOH TIP A . F 4 HOH 82 489 82 HOH TIP A . F 4 HOH 83 490 83 HOH TIP A . F 4 HOH 84 491 84 HOH TIP A . F 4 HOH 85 492 85 HOH TIP A . F 4 HOH 86 493 86 HOH TIP A . F 4 HOH 87 494 87 HOH TIP A . F 4 HOH 88 495 88 HOH TIP A . F 4 HOH 89 496 89 HOH TIP A . F 4 HOH 90 497 90 HOH TIP A . F 4 HOH 91 498 91 HOH TIP A . F 4 HOH 92 499 92 HOH TIP A . F 4 HOH 93 500 93 HOH TIP A . F 4 HOH 94 501 94 HOH TIP A . F 4 HOH 95 502 95 HOH TIP A . F 4 HOH 96 503 96 HOH TIP A . F 4 HOH 97 504 97 HOH TIP A . F 4 HOH 98 505 98 HOH TIP A . F 4 HOH 99 506 99 HOH TIP A . F 4 HOH 100 507 100 HOH TIP A . F 4 HOH 101 508 101 HOH TIP A . F 4 HOH 102 509 102 HOH TIP A . F 4 HOH 103 510 103 HOH TIP A . F 4 HOH 104 511 104 HOH TIP A . F 4 HOH 105 512 105 HOH TIP A . F 4 HOH 106 513 106 HOH TIP A . F 4 HOH 107 514 107 HOH TIP A . F 4 HOH 108 515 108 HOH TIP A . F 4 HOH 109 516 109 HOH TIP A . F 4 HOH 110 517 110 HOH TIP A . F 4 HOH 111 518 111 HOH TIP A . F 4 HOH 112 519 112 HOH TIP A . F 4 HOH 113 520 113 HOH TIP A . F 4 HOH 114 521 114 HOH TIP A . F 4 HOH 115 522 115 HOH TIP A . F 4 HOH 116 523 116 HOH TIP A . F 4 HOH 117 524 117 HOH TIP A . F 4 HOH 118 525 118 HOH TIP A . F 4 HOH 119 526 119 HOH TIP A . F 4 HOH 120 527 120 HOH TIP A . F 4 HOH 121 528 121 HOH TIP A . F 4 HOH 122 529 122 HOH TIP A . F 4 HOH 123 530 123 HOH TIP A . F 4 HOH 124 531 124 HOH TIP A . F 4 HOH 125 532 125 HOH TIP A . F 4 HOH 126 533 126 HOH TIP A . F 4 HOH 127 534 127 HOH TIP A . F 4 HOH 128 535 128 HOH TIP A . F 4 HOH 129 536 129 HOH TIP A . F 4 HOH 130 537 130 HOH TIP A . F 4 HOH 131 538 131 HOH TIP A . F 4 HOH 132 539 132 HOH TIP A . F 4 HOH 133 540 133 HOH TIP A . F 4 HOH 134 541 134 HOH TIP A . F 4 HOH 135 542 135 HOH TIP A . F 4 HOH 136 543 136 HOH TIP A . F 4 HOH 137 544 137 HOH TIP A . F 4 HOH 138 545 138 HOH TIP A . F 4 HOH 139 546 139 HOH TIP A . F 4 HOH 140 547 140 HOH TIP A . F 4 HOH 141 548 141 HOH TIP A . F 4 HOH 142 549 142 HOH TIP A . F 4 HOH 143 550 143 HOH TIP A . F 4 HOH 144 551 144 HOH TIP A . F 4 HOH 145 552 145 HOH TIP A . F 4 HOH 146 553 146 HOH TIP A . F 4 HOH 147 554 147 HOH TIP A . F 4 HOH 148 555 148 HOH TIP A . F 4 HOH 149 556 149 HOH TIP A . F 4 HOH 150 557 150 HOH TIP A . F 4 HOH 151 558 151 HOH TIP A . F 4 HOH 152 559 152 HOH TIP A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OD1 ? A ASP 71 ? A ASP 320 ? 1_555 CA ? C CA . ? A CA 405 ? 1_555 OD2 ? A ASP 71 ? A ASP 320 ? 1_555 50.8 ? 2 OD1 ? A ASP 71 ? A ASP 320 ? 1_555 CA ? C CA . ? A CA 405 ? 1_555 OE1 ? A GLU 75 ? A GLU 324 ? 1_555 98.2 ? 3 OD2 ? A ASP 71 ? A ASP 320 ? 1_555 CA ? C CA . ? A CA 405 ? 1_555 OE1 ? A GLU 75 ? A GLU 324 ? 1_555 81.9 ? 4 OD1 ? A ASP 71 ? A ASP 320 ? 1_555 CA ? C CA . ? A CA 405 ? 1_555 OE2 ? A GLU 75 ? A GLU 324 ? 1_555 120.2 ? 5 OD2 ? A ASP 71 ? A ASP 320 ? 1_555 CA ? C CA . ? A CA 405 ? 1_555 OE2 ? A GLU 75 ? A GLU 324 ? 1_555 72.3 ? 6 OE1 ? A GLU 75 ? A GLU 324 ? 1_555 CA ? C CA . ? A CA 405 ? 1_555 OE2 ? A GLU 75 ? A GLU 324 ? 1_555 52.0 ? 7 OD1 ? A ASP 71 ? A ASP 320 ? 1_555 CA ? C CA . ? A CA 405 ? 1_555 OD1 ? A ASN 101 ? A ASN 350 ? 1_555 156.5 ? 8 OD2 ? A ASP 71 ? A ASP 320 ? 1_555 CA ? C CA . ? A CA 405 ? 1_555 OD1 ? A ASN 101 ? A ASN 350 ? 1_555 150.7 ? 9 OE1 ? A GLU 75 ? A GLU 324 ? 1_555 CA ? C CA . ? A CA 405 ? 1_555 OD1 ? A ASN 101 ? A ASN 350 ? 1_555 82.0 ? 10 OE2 ? A GLU 75 ? A GLU 324 ? 1_555 CA ? C CA . ? A CA 405 ? 1_555 OD1 ? A ASN 101 ? A ASN 350 ? 1_555 78.5 ? 11 OD1 ? A ASP 71 ? A ASP 320 ? 1_555 CA ? C CA . ? A CA 405 ? 1_555 O ? A GLU 105 ? A GLU 354 ? 1_555 90.3 ? 12 OD2 ? A ASP 71 ? A ASP 320 ? 1_555 CA ? C CA . ? A CA 405 ? 1_555 O ? A GLU 105 ? A GLU 354 ? 1_555 127.1 ? 13 OE1 ? A GLU 75 ? A GLU 324 ? 1_555 CA ? C CA . ? A CA 405 ? 1_555 O ? A GLU 105 ? A GLU 354 ? 1_555 145.8 ? 14 OE2 ? A GLU 75 ? A GLU 324 ? 1_555 CA ? C CA . ? A CA 405 ? 1_555 O ? A GLU 105 ? A GLU 354 ? 1_555 145.4 ? 15 OD1 ? A ASN 101 ? A ASN 350 ? 1_555 CA ? C CA . ? A CA 405 ? 1_555 O ? A GLU 105 ? A GLU 354 ? 1_555 77.5 ? 16 OD1 ? A ASP 71 ? A ASP 320 ? 1_555 CA ? C CA . ? A CA 405 ? 1_555 OD1 ? A ASP 106 ? A ASP 355 ? 1_555 73.5 ? 17 OD2 ? A ASP 71 ? A ASP 320 ? 1_555 CA ? C CA . ? A CA 405 ? 1_555 OD1 ? A ASP 106 ? A ASP 355 ? 1_555 114.3 ? 18 OE1 ? A GLU 75 ? A GLU 324 ? 1_555 CA ? C CA . ? A CA 405 ? 1_555 OD1 ? A ASP 106 ? A ASP 355 ? 1_555 73.8 ? 19 OE2 ? A GLU 75 ? A GLU 324 ? 1_555 CA ? C CA . ? A CA 405 ? 1_555 OD1 ? A ASP 106 ? A ASP 355 ? 1_555 124.6 ? 20 OD1 ? A ASN 101 ? A ASN 350 ? 1_555 CA ? C CA . ? A CA 405 ? 1_555 OD1 ? A ASP 106 ? A ASP 355 ? 1_555 84.1 ? 21 O ? A GLU 105 ? A GLU 354 ? 1_555 CA ? C CA . ? A CA 405 ? 1_555 OD1 ? A ASP 106 ? A ASP 355 ? 1_555 77.1 ? 22 OD1 ? A ASP 71 ? A ASP 320 ? 1_555 CA ? C CA . ? A CA 405 ? 1_555 O ? F HOH . ? A HOH 412 ? 1_555 108.7 ? 23 OD2 ? A ASP 71 ? A ASP 320 ? 1_555 CA ? C CA . ? A CA 405 ? 1_555 O ? F HOH . ? A HOH 412 ? 1_555 86.3 ? 24 OE1 ? A GLU 75 ? A GLU 324 ? 1_555 CA ? C CA . ? A CA 405 ? 1_555 O ? F HOH . ? A HOH 412 ? 1_555 133.1 ? 25 OE2 ? A GLU 75 ? A GLU 324 ? 1_555 CA ? C CA . ? A CA 405 ? 1_555 O ? F HOH . ? A HOH 412 ? 1_555 81.2 ? 26 OD1 ? A ASN 101 ? A ASN 350 ? 1_555 CA ? C CA . ? A CA 405 ? 1_555 O ? F HOH . ? A HOH 412 ? 1_555 87.1 ? 27 O ? A GLU 105 ? A GLU 354 ? 1_555 CA ? C CA . ? A CA 405 ? 1_555 O ? F HOH . ? A HOH 412 ? 1_555 73.0 ? 28 OD1 ? A ASP 106 ? A ASP 355 ? 1_555 CA ? C CA . ? A CA 405 ? 1_555 O ? F HOH . ? A HOH 412 ? 1_555 150.0 ? 29 OE1 ? A GLU 75 ? A GLU 324 ? 1_555 CA ? E CA . ? A CA 407 ? 1_555 OE2 ? A GLU 104 ? A GLU 353 ? 1_555 90.8 ? 30 OE1 ? A GLU 75 ? A GLU 324 ? 1_555 CA ? E CA . ? A CA 407 ? 1_555 OD2 ? A ASP 106 ? A ASP 355 ? 1_555 118.9 ? 31 OE2 ? A GLU 104 ? A GLU 353 ? 1_555 CA ? E CA . ? A CA 407 ? 1_555 OD2 ? A ASP 106 ? A ASP 355 ? 1_555 108.6 ? 32 OE1 ? A GLU 75 ? A GLU 324 ? 1_555 CA ? E CA . ? A CA 407 ? 1_555 OD1 ? A ASP 106 ? A ASP 355 ? 1_555 73.1 ? 33 OE2 ? A GLU 104 ? A GLU 353 ? 1_555 CA ? E CA . ? A CA 407 ? 1_555 OD1 ? A ASP 106 ? A ASP 355 ? 1_555 90.4 ? 34 OD2 ? A ASP 106 ? A ASP 355 ? 1_555 CA ? E CA . ? A CA 407 ? 1_555 OD1 ? A ASP 106 ? A ASP 355 ? 1_555 50.4 ? 35 OE1 ? A GLU 75 ? A GLU 324 ? 1_555 CA ? E CA . ? A CA 407 ? 1_555 O ? F HOH . ? A HOH 409 ? 1_555 86.3 ? 36 OE2 ? A GLU 104 ? A GLU 353 ? 1_555 CA ? E CA . ? A CA 407 ? 1_555 O ? F HOH . ? A HOH 409 ? 1_555 168.5 ? 37 OD2 ? A ASP 106 ? A ASP 355 ? 1_555 CA ? E CA . ? A CA 407 ? 1_555 O ? F HOH . ? A HOH 409 ? 1_555 82.5 ? 38 OD1 ? A ASP 106 ? A ASP 355 ? 1_555 CA ? E CA . ? A CA 407 ? 1_555 O ? F HOH . ? A HOH 409 ? 1_555 99.4 ? 39 OE1 ? A GLU 75 ? A GLU 324 ? 1_555 CA ? E CA . ? A CA 407 ? 1_555 O ? F HOH . ? A HOH 410 ? 1_555 85.2 ? 40 OE2 ? A GLU 104 ? A GLU 353 ? 1_555 CA ? E CA . ? A CA 407 ? 1_555 O ? F HOH . ? A HOH 410 ? 1_555 80.8 ? 41 OD2 ? A ASP 106 ? A ASP 355 ? 1_555 CA ? E CA . ? A CA 407 ? 1_555 O ? F HOH . ? A HOH 410 ? 1_555 153.0 ? 42 OD1 ? A ASP 106 ? A ASP 355 ? 1_555 CA ? E CA . ? A CA 407 ? 1_555 O ? F HOH . ? A HOH 410 ? 1_555 156.6 ? 43 O ? F HOH . ? A HOH 409 ? 1_555 CA ? E CA . ? A CA 407 ? 1_555 O ? F HOH . ? A HOH 410 ? 1_555 87.8 ? 44 OE1 ? A GLU 75 ? A GLU 324 ? 1_555 CA ? E CA . ? A CA 407 ? 1_555 O ? F HOH . ? A HOH 411 ? 1_555 162.9 ? 45 OE2 ? A GLU 104 ? A GLU 353 ? 1_555 CA ? E CA . ? A CA 407 ? 1_555 O ? F HOH . ? A HOH 411 ? 1_555 91.1 ? 46 OD2 ? A ASP 106 ? A ASP 355 ? 1_555 CA ? E CA . ? A CA 407 ? 1_555 O ? F HOH . ? A HOH 411 ? 1_555 76.4 ? 47 OD1 ? A ASP 106 ? A ASP 355 ? 1_555 CA ? E CA . ? A CA 407 ? 1_555 O ? F HOH . ? A HOH 411 ? 1_555 123.8 ? 48 O ? F HOH . ? A HOH 409 ? 1_555 CA ? E CA . ? A CA 407 ? 1_555 O ? F HOH . ? A HOH 411 ? 1_555 88.5 ? 49 O ? F HOH . ? A HOH 410 ? 1_555 CA ? E CA . ? A CA 407 ? 1_555 O ? F HOH . ? A HOH 411 ? 1_555 78.3 ? 50 OE1 ? A GLU 98 ? A GLU 347 ? 1_555 CA ? D CA . ? A CA 406 ? 1_555 OD1 ? A ASN 100 ? A ASN 349 ? 1_555 72.1 ? 51 OE1 ? A GLU 98 ? A GLU 347 ? 1_555 CA ? D CA . ? A CA 406 ? 1_555 OE1 ? A GLU 105 ? A GLU 354 ? 1_555 141.7 ? 52 OD1 ? A ASN 100 ? A ASN 349 ? 1_555 CA ? D CA . ? A CA 406 ? 1_555 OE1 ? A GLU 105 ? A GLU 354 ? 1_555 71.8 ? 53 OE1 ? A GLU 98 ? A GLU 347 ? 1_555 CA ? D CA . ? A CA 406 ? 1_555 OD1 ? A ASN 116 ? A ASN 365 ? 1_555 69.1 ? 54 OD1 ? A ASN 100 ? A ASN 349 ? 1_555 CA ? D CA . ? A CA 406 ? 1_555 OD1 ? A ASN 116 ? A ASN 365 ? 1_555 140.1 ? 55 OE1 ? A GLU 105 ? A GLU 354 ? 1_555 CA ? D CA . ? A CA 406 ? 1_555 OD1 ? A ASN 116 ? A ASN 365 ? 1_555 148.1 ? 56 OE1 ? A GLU 98 ? A GLU 347 ? 1_555 CA ? D CA . ? A CA 406 ? 1_555 O ? A ASP 117 ? A ASP 366 ? 1_555 133.9 ? 57 OD1 ? A ASN 100 ? A ASN 349 ? 1_555 CA ? D CA . ? A CA 406 ? 1_555 O ? A ASP 117 ? A ASP 366 ? 1_555 137.8 ? 58 OE1 ? A GLU 105 ? A GLU 354 ? 1_555 CA ? D CA . ? A CA 406 ? 1_555 O ? A ASP 117 ? A ASP 366 ? 1_555 71.4 ? 59 OD1 ? A ASN 116 ? A ASN 365 ? 1_555 CA ? D CA . ? A CA 406 ? 1_555 O ? A ASP 117 ? A ASP 366 ? 1_555 78.7 ? 60 OE1 ? A GLU 98 ? A GLU 347 ? 1_555 CA ? D CA . ? A CA 406 ? 1_555 OD1 ? A ASP 117 ? A ASP 366 ? 1_555 75.3 ? 61 OD1 ? A ASN 100 ? A ASN 349 ? 1_555 CA ? D CA . ? A CA 406 ? 1_555 OD1 ? A ASP 117 ? A ASP 366 ? 1_555 87.1 ? 62 OE1 ? A GLU 105 ? A GLU 354 ? 1_555 CA ? D CA . ? A CA 406 ? 1_555 OD1 ? A ASP 117 ? A ASP 366 ? 1_555 90.7 ? 63 OD1 ? A ASN 116 ? A ASN 365 ? 1_555 CA ? D CA . ? A CA 406 ? 1_555 OD1 ? A ASP 117 ? A ASP 366 ? 1_555 91.4 ? 64 O ? A ASP 117 ? A ASP 366 ? 1_555 CA ? D CA . ? A CA 406 ? 1_555 OD1 ? A ASP 117 ? A ASP 366 ? 1_555 73.4 ? 65 OE1 ? A GLU 98 ? A GLU 347 ? 1_555 CA ? D CA . ? A CA 406 ? 1_555 O3 ? B MAN . ? B MAN 3 ? 1_555 71.3 ? 66 OD1 ? A ASN 100 ? A ASN 349 ? 1_555 CA ? D CA . ? A CA 406 ? 1_555 O3 ? B MAN . ? B MAN 3 ? 1_555 77.0 ? 67 OE1 ? A GLU 105 ? A GLU 354 ? 1_555 CA ? D CA . ? A CA 406 ? 1_555 O3 ? B MAN . ? B MAN 3 ? 1_555 111.9 ? 68 OD1 ? A ASN 116 ? A ASN 365 ? 1_555 CA ? D CA . ? A CA 406 ? 1_555 O3 ? B MAN . ? B MAN 3 ? 1_555 82.5 ? 69 O ? A ASP 117 ? A ASP 366 ? 1_555 CA ? D CA . ? A CA 406 ? 1_555 O3 ? B MAN . ? B MAN 3 ? 1_555 136.7 ? 70 OD1 ? A ASP 117 ? A ASP 366 ? 1_555 CA ? D CA . ? A CA 406 ? 1_555 O3 ? B MAN . ? B MAN 3 ? 1_555 146.0 ? 71 OE1 ? A GLU 98 ? A GLU 347 ? 1_555 CA ? D CA . ? A CA 406 ? 1_555 O4 ? B MAN . ? B MAN 3 ? 1_555 132.3 ? 72 OD1 ? A ASN 100 ? A ASN 349 ? 1_555 CA ? D CA . ? A CA 406 ? 1_555 O4 ? B MAN . ? B MAN 3 ? 1_555 119.7 ? 73 OE1 ? A GLU 105 ? A GLU 354 ? 1_555 CA ? D CA . ? A CA 406 ? 1_555 O4 ? B MAN . ? B MAN 3 ? 1_555 77.9 ? 74 OD1 ? A ASN 116 ? A ASN 365 ? 1_555 CA ? D CA . ? A CA 406 ? 1_555 O4 ? B MAN . ? B MAN 3 ? 1_555 82.1 ? 75 O ? A ASP 117 ? A ASP 366 ? 1_555 CA ? D CA . ? A CA 406 ? 1_555 O4 ? B MAN . ? B MAN 3 ? 1_555 71.1 ? 76 OD1 ? A ASP 117 ? A ASP 366 ? 1_555 CA ? D CA . ? A CA 406 ? 1_555 O4 ? B MAN . ? B MAN 3 ? 1_555 144.5 ? 77 O3 ? B MAN . ? B MAN 3 ? 1_555 CA ? D CA . ? A CA 406 ? 1_555 O4 ? B MAN . ? B MAN 3 ? 1_555 67.9 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2004-06-15 2 'Structure model' 1 1 2008-04-29 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 2 0 2020-07-29 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 4 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Atomic model' 4 4 'Structure model' 'Data collection' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' atom_site 2 4 'Structure model' chem_comp 3 4 'Structure model' entity 4 4 'Structure model' pdbx_branch_scheme 5 4 'Structure model' pdbx_chem_comp_identifier 6 4 'Structure model' pdbx_entity_branch 7 4 'Structure model' pdbx_entity_branch_descriptor 8 4 'Structure model' pdbx_entity_branch_link 9 4 'Structure model' pdbx_entity_branch_list 10 4 'Structure model' pdbx_entity_nonpoly 11 4 'Structure model' pdbx_nonpoly_scheme 12 4 'Structure model' pdbx_struct_assembly_gen 13 4 'Structure model' pdbx_struct_conn_angle 14 4 'Structure model' struct_asym 15 4 'Structure model' struct_conn 16 4 'Structure model' struct_site 17 4 'Structure model' struct_site_gen # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_atom_site.auth_asym_id' 2 4 'Structure model' '_atom_site.label_asym_id' 3 4 'Structure model' '_chem_comp.name' 4 4 'Structure model' '_chem_comp.type' 5 4 'Structure model' '_entity.formula_weight' 6 4 'Structure model' '_entity.pdbx_description' 7 4 'Structure model' '_entity.pdbx_number_of_molecules' 8 4 'Structure model' '_entity.type' 9 4 'Structure model' '_pdbx_struct_assembly_gen.asym_id_list' 10 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_asym_id' 11 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 12 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 13 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 14 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 15 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 16 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 17 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_seq_id' 18 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 19 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_asym_id' 20 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 21 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 22 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 23 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 24 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 25 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 26 4 'Structure model' '_pdbx_struct_conn_angle.value' 27 4 'Structure model' '_struct_conn.pdbx_dist_value' 28 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 29 4 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 30 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 31 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 32 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 33 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 34 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 35 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 36 4 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 37 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 38 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 39 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 40 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 41 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 42 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CNS refinement 1.1 ? 1 MOSFLM 'data reduction' . ? 2 CCP4 'data scaling' '(SCALA)' ? 3 COMO phasing . ? 4 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 VAL A 292 ? ? -38.18 121.53 2 1 ASN A 350 ? ? 48.50 28.01 3 1 GLU A 353 ? ? 73.53 89.09 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLU 250 ? A GLU 1 2 1 Y 1 A ARG 251 ? A ARG 2 3 1 Y 1 A LEU 252 ? A LEU 3 4 1 Y 1 A SER 385 ? A SER 136 5 1 Y 1 A ARG 386 ? A ARG 137 6 1 Y 1 A ASP 387 ? A ASP 138 7 1 Y 1 A GLU 388 ? A GLU 139 8 1 Y 1 A GLU 389 ? A GLU 140 9 1 Y 1 A GLN 390 ? A GLN 141 10 1 Y 1 A PHE 391 ? A PHE 142 11 1 Y 1 A LEU 392 ? A LEU 143 12 1 Y 1 A SER 393 ? A SER 144 13 1 Y 1 A PRO 394 ? A PRO 145 14 1 Y 1 A ALA 395 ? A ALA 146 15 1 Y 1 A PRO 396 ? A PRO 147 16 1 Y 1 A ALA 397 ? A ALA 148 17 1 Y 1 A THR 398 ? A THR 149 18 1 Y 1 A PRO 399 ? A PRO 150 19 1 Y 1 A ASN 400 ? A ASN 151 20 1 Y 1 A PRO 401 ? A PRO 152 21 1 Y 1 A PRO 402 ? A PRO 153 22 1 Y 1 A PRO 403 ? A PRO 154 23 1 Y 1 A ALA 404 ? A ALA 155 # loop_ _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_mon_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.hetero B 2 MAN 1 B MAN 1 C MAN 1 n B 2 MAN 2 B MAN 2 C MAN 2 n B 2 MAN 3 B MAN 3 C MAN 3 n B 2 MAN 4 B MAN 4 C MAN 4 n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier MAN 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DManpa MAN 'COMMON NAME' GMML 1.0 a-D-mannopyranose MAN 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 a-D-Manp MAN 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Man # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_descriptor.ordinal _pdbx_entity_branch_descriptor.entity_id _pdbx_entity_branch_descriptor.descriptor _pdbx_entity_branch_descriptor.type _pdbx_entity_branch_descriptor.program _pdbx_entity_branch_descriptor.program_version 1 2 'DManpa1-3[DManpa1-6]DManpa1-6DManpa1-ROH' 'Glycam Condensed Sequence' GMML 1.0 2 2 'WURCS=2.0/1,4,3/[a1122h-1a_1-5]/1-1-1-1/a6-b1_b3-c1_b6-d1' WURCS PDB2Glycan 1.1.0 3 2 '[][a-D-Manp]{[(6+1)][a-D-Manp]{[(3+1)][a-D-Manp]{}[(6+1)][a-D-Manp]{}}}' LINUCS PDB-CARE ? # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.value_order _pdbx_entity_branch_link.details 1 2 2 MAN C1 O1 1 MAN O6 HO6 sing ? 2 2 3 MAN C1 O1 2 MAN O3 HO3 sing ? 3 2 4 MAN C1 O1 2 MAN O6 HO6 sing ? # loop_ _pdbx_entity_branch_list.entity_id _pdbx_entity_branch_list.comp_id _pdbx_entity_branch_list.num _pdbx_entity_branch_list.hetero 2 MAN 1 n 2 MAN 2 n 2 MAN 3 n 2 MAN 4 n # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'CALCIUM ION' CA 4 water HOH #