data_1SL5 # _entry.id 1SL5 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.329 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 1SL5 RCSB RCSB021807 WWPDB D_1000021807 # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1SL5 _pdbx_database_status.recvd_initial_deposition_date 2004-03-05 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Guo, Y.' 1 'Feinberg, H.' 2 'Conroy, E.' 3 'Mitchell, D.A.' 4 'Alvarez, R.' 5 'Blixt, O.' 6 'Taylor, M.E.' 7 'Weis, W.I.' 8 'Drickamer, K.' 9 # _citation.id primary _citation.title ;Structural basis for distinct ligand-binding and targeting properties of the receptors DC-SIGN and DC-SIGNR ; _citation.journal_abbrev Nat.Struct.Mol.Biol. _citation.journal_volume 11 _citation.page_first 591 _citation.page_last 598 _citation.year 2004 _citation.journal_id_ASTM ? _citation.country US _citation.journal_id_ISSN 1545-9993 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 15195147 _citation.pdbx_database_id_DOI 10.1038/nsmb784 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Guo, Y.' 1 ? primary 'Feinberg, H.' 2 ? primary 'Conroy, E.' 3 ? primary 'Mitchell, D.A.' 4 ? primary 'Alvarez, R.' 5 ? primary 'Blixt, O.' 6 ? primary 'Taylor, M.E.' 7 ? primary 'Weis, W.I.' 8 ? primary 'Drickamer, K.' 9 ? # _cell.entry_id 1SL5 _cell.length_a 72.57 _cell.length_b 55.37 _cell.length_c 29.63 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1SL5 _symmetry.space_group_name_H-M 'P 21 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'mDC-SIGN1B type I isoform' 16130.791 1 ? ? ? ? 2 branched man 'alpha-L-fucopyranose-(1-3)-[beta-D-galactopyranose-(1-4)]2-acetamido-2-deoxy-beta-D-glucopyranose-(1-3)-beta-D-galactopyranose' 691.630 1 ? ? ? ? 3 non-polymer syn 'CALCIUM ION' 40.078 2 ? ? ? ? 4 non-polymer syn 'MAGNESIUM ION' 24.305 1 ? ? ? ? 5 water nat water 18.015 192 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;ERLCHPCPWEWTFFQGNCYFMSNSQRNWHDSITACKEVGAQLVVIKSAEEQNFLQLQSSRSNRFTWMGLSDLNQEGTWQW VDGSPLLPSFKQYWNRGEPNNVGEEDCAEFSGNGWNDDKCNLAKFWICKKSAASCSRDE ; _entity_poly.pdbx_seq_one_letter_code_can ;ERLCHPCPWEWTFFQGNCYFMSNSQRNWHDSITACKEVGAQLVVIKSAEEQNFLQLQSSRSNRFTWMGLSDLNQEGTWQW VDGSPLLPSFKQYWNRGEPNNVGEEDCAEFSGNGWNDDKCNLAKFWICKKSAASCSRDE ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLU n 1 2 ARG n 1 3 LEU n 1 4 CYS n 1 5 HIS n 1 6 PRO n 1 7 CYS n 1 8 PRO n 1 9 TRP n 1 10 GLU n 1 11 TRP n 1 12 THR n 1 13 PHE n 1 14 PHE n 1 15 GLN n 1 16 GLY n 1 17 ASN n 1 18 CYS n 1 19 TYR n 1 20 PHE n 1 21 MET n 1 22 SER n 1 23 ASN n 1 24 SER n 1 25 GLN n 1 26 ARG n 1 27 ASN n 1 28 TRP n 1 29 HIS n 1 30 ASP n 1 31 SER n 1 32 ILE n 1 33 THR n 1 34 ALA n 1 35 CYS n 1 36 LYS n 1 37 GLU n 1 38 VAL n 1 39 GLY n 1 40 ALA n 1 41 GLN n 1 42 LEU n 1 43 VAL n 1 44 VAL n 1 45 ILE n 1 46 LYS n 1 47 SER n 1 48 ALA n 1 49 GLU n 1 50 GLU n 1 51 GLN n 1 52 ASN n 1 53 PHE n 1 54 LEU n 1 55 GLN n 1 56 LEU n 1 57 GLN n 1 58 SER n 1 59 SER n 1 60 ARG n 1 61 SER n 1 62 ASN n 1 63 ARG n 1 64 PHE n 1 65 THR n 1 66 TRP n 1 67 MET n 1 68 GLY n 1 69 LEU n 1 70 SER n 1 71 ASP n 1 72 LEU n 1 73 ASN n 1 74 GLN n 1 75 GLU n 1 76 GLY n 1 77 THR n 1 78 TRP n 1 79 GLN n 1 80 TRP n 1 81 VAL n 1 82 ASP n 1 83 GLY n 1 84 SER n 1 85 PRO n 1 86 LEU n 1 87 LEU n 1 88 PRO n 1 89 SER n 1 90 PHE n 1 91 LYS n 1 92 GLN n 1 93 TYR n 1 94 TRP n 1 95 ASN n 1 96 ARG n 1 97 GLY n 1 98 GLU n 1 99 PRO n 1 100 ASN n 1 101 ASN n 1 102 VAL n 1 103 GLY n 1 104 GLU n 1 105 GLU n 1 106 ASP n 1 107 CYS n 1 108 ALA n 1 109 GLU n 1 110 PHE n 1 111 SER n 1 112 GLY n 1 113 ASN n 1 114 GLY n 1 115 TRP n 1 116 ASN n 1 117 ASP n 1 118 ASP n 1 119 LYS n 1 120 CYS n 1 121 ASN n 1 122 LEU n 1 123 ALA n 1 124 LYS n 1 125 PHE n 1 126 TRP n 1 127 ILE n 1 128 CYS n 1 129 LYS n 1 130 LYS n 1 131 SER n 1 132 ALA n 1 133 ALA n 1 134 SER n 1 135 CYS n 1 136 SER n 1 137 ARG n 1 138 ASP n 1 139 GLU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell BL21/DE3 _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name GB _struct_ref.db_code AAK91854 _struct_ref.pdbx_db_accession 15281089 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;ERLCHPCPWEWTFFQGNCYFMSNSQRNWHDSITACKEVGAQLVVIKSAEEQNFLQLQSSRSNRFTWMGLSDLNQEGTWQW VDGSPLLPSFKQYWNRGEPNNVGEEDCAEFSGNGWNDDKCNLAKFWICKKSAASCSRDEEQFLSPAPATPNPPPA ; _struct_ref.pdbx_align_begin 250 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1SL5 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 139 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 15281089 _struct_ref_seq.db_align_beg 250 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 388 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 250 _struct_ref_seq.pdbx_auth_seq_align_end 388 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CA non-polymer . 'CALCIUM ION' ? 'Ca 2' 40.078 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 FUC 'L-saccharide, alpha linking' . alpha-L-fucopyranose ? 'C6 H12 O5' 164.156 GAL 'D-saccharide, beta linking' . beta-D-galactopyranose ? 'C6 H12 O6' 180.156 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 NAG 'D-saccharide, beta linking' . 2-acetamido-2-deoxy-beta-D-glucopyranose ? 'C8 H15 N O6' 221.208 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1SL5 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 33.94 _exptl_crystal.description ? _exptl_crystal.density_Matthews 1.88 # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 8.5 _exptl_crystal_grow.pdbx_details ;30% PEG 4000, 0.2M MgCl2, 0.1M Tris pH 8.5. Protein solution: 10 mg/ml protein, 5mM CaCl2, 10mM oligosaccharide., VAPOR DIFFUSION, HANGING DROP, temperature 298K ; _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type ADSC _diffrn_detector.pdbx_collection_date 2003-06-22 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Double-crystal Si(111)' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.08940 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ALS BEAMLINE 8.2.2' _diffrn_source.pdbx_synchrotron_site ALS _diffrn_source.pdbx_synchrotron_beamline 8.2.2 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.08940 # _reflns.entry_id 1SL5 _reflns.observed_criterion_sigma_I -3.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 100 _reflns.d_resolution_high 1.7 _reflns.number_obs 12903 _reflns.number_all 13737 _reflns.percent_possible_obs 93.9 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.053 _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate 10.6 _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.7 _reflns_shell.d_res_low 1.76 _reflns_shell.percent_possible_all 88.5 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 1SL5 _refine.ls_number_reflns_obs 11105 _refine.ls_number_reflns_all 12014 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF 1015228.50 _refine.pdbx_data_cutoff_low_absF 0.000000 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 44.02 _refine.ls_d_res_high 1.80 _refine.ls_percent_reflns_obs 95.3 _refine.ls_R_factor_obs ? _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.179 _refine.ls_R_factor_R_free 0.223 _refine.ls_R_factor_R_free_error 0.007 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 8.2 _refine.ls_number_reflns_R_free 909 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 18.4 _refine.aniso_B[1][1] -0.26 _refine.aniso_B[2][2] 4.92 _refine.aniso_B[3][3] -4.65 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.361226 _refine.solvent_model_param_bsol 37.3354 _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 1SL5 _refine_analyze.Luzzati_coordinate_error_obs 0.18 _refine_analyze.Luzzati_sigma_a_obs 0.14 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.24 _refine_analyze.Luzzati_sigma_a_free 0.19 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1064 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 50 _refine_hist.number_atoms_solvent 192 _refine_hist.number_atoms_total 1306 _refine_hist.d_res_high 1.80 _refine_hist.d_res_low 44.02 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.005 ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.2 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 23.2 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 0.72 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it 1.26 1.50 ? ? 'X-RAY DIFFRACTION' ? c_mcangle_it 1.98 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scbond_it 1.93 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scangle_it 2.91 2.50 ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 1.80 _refine_ls_shell.d_res_low 1.91 _refine_ls_shell.number_reflns_R_work 1580 _refine_ls_shell.R_factor_R_work 0.24 _refine_ls_shell.percent_reflns_obs 90.5 _refine_ls_shell.R_factor_R_free 0.309 _refine_ls_shell.R_factor_R_free_error 0.026 _refine_ls_shell.percent_reflns_R_free 8.4 _refine_ls_shell.number_reflns_R_free 144 _refine_ls_shell.number_reflns_obs 1724 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.R_factor_all ? # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 PROTEIN_REP.PARAM PROTEIN.TOP 'X-RAY DIFFRACTION' 2 ION.PARAM PROTEIN_BREAK.TOP 'X-RAY DIFFRACTION' 3 CARBOHYDRATE.PARAM_N WATER.TOP 'X-RAY DIFFRACTION' 4 WATER_REP.PARAM CARBOHYDRATE.TOP_NEW 'X-RAY DIFFRACTION' 5 ? ION.TOP 'X-RAY DIFFRACTION' # _struct.entry_id 1SL5 _struct.title 'Crystal Structure of DC-SIGN carbohydrate recognition domain complexed with LNFP III (Dextra L504).' _struct.pdbx_descriptor 'mDC-SIGN1B type I isoform' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1SL5 _struct_keywords.pdbx_keywords 'SUGAR BINDING PROTEIN' _struct_keywords.text 'DC-SIGN, C-TYPE LECTIN, SUGAR BINDING PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 4 ? F N N 5 ? # _struct_biol.id 1 _struct_biol.pdbx_parent_biol_id ? _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASN A 27 ? VAL A 38 ? ASN A 276 VAL A 287 1 ? 12 HELX_P HELX_P2 2 SER A 47 ? ASN A 62 ? SER A 296 ASN A 311 1 ? 16 HELX_P HELX_P3 3 LEU A 87 ? TRP A 94 ? LEU A 336 TRP A 343 5 ? 8 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 7 SG ? ? ? 1_555 A CYS 18 SG ? ? A CYS 256 A CYS 267 1_555 ? ? ? ? ? ? ? 2.023 ? ? disulf2 disulf ? ? A CYS 35 SG ? ? ? 1_555 A CYS 128 SG ? ? A CYS 284 A CYS 377 1_555 ? ? ? ? ? ? ? 2.033 ? ? disulf3 disulf ? ? A CYS 107 SG ? ? ? 1_555 A CYS 120 SG ? ? A CYS 356 A CYS 369 1_555 ? ? ? ? ? ? ? 2.029 ? ? covale1 covale both ? B GAL . O3 ? ? ? 1_555 B NAG . C1 ? ? B GAL 1 B NAG 2 1_555 ? ? ? ? ? ? ? 1.384 ? ? covale2 covale both ? B NAG . O3 ? ? ? 1_555 B FUC . C1 ? ? B NAG 2 B FUC 3 1_555 ? ? ? ? ? ? ? 1.392 ? ? covale3 covale both ? B NAG . O4 ? ? ? 1_555 B GAL . C1 ? ? B NAG 2 B GAL 4 1_555 ? ? ? ? ? ? ? 1.383 ? ? metalc1 metalc ? ? A ASP 71 OD1 ? ? ? 1_555 C CA . CA ? ? A ASP 320 A CA 401 1_555 ? ? ? ? ? ? ? 2.713 ? ? metalc2 metalc ? ? A ASP 71 OD2 ? ? ? 1_555 C CA . CA ? ? A ASP 320 A CA 401 1_555 ? ? ? ? ? ? ? 2.469 ? ? metalc3 metalc ? ? A GLU 75 OE2 ? ? ? 1_555 C CA . CA ? ? A GLU 324 A CA 401 1_555 ? ? ? ? ? ? ? 2.456 ? ? metalc4 metalc ? ? A GLU 75 OE1 ? ? ? 1_555 C CA . CA ? ? A GLU 324 A CA 401 1_555 ? ? ? ? ? ? ? 2.397 ? ? metalc5 metalc ? ? A GLU 98 OE1 ? ? ? 1_555 D CA . CA ? ? A GLU 347 A CA 402 1_555 ? ? ? ? ? ? ? 2.530 ? ? metalc6 metalc ? ? A ASN 100 OD1 ? ? ? 1_555 D CA . CA ? ? A ASN 349 A CA 402 1_555 ? ? ? ? ? ? ? 2.304 ? ? metalc7 metalc ? ? A ASN 101 OD1 ? ? ? 1_555 C CA . CA ? ? A ASN 350 A CA 401 1_555 ? ? ? ? ? ? ? 2.419 ? ? metalc8 metalc ? ? A GLU 105 O ? ? ? 1_555 C CA . CA ? ? A GLU 354 A CA 401 1_555 ? ? ? ? ? ? ? 2.543 ? ? metalc9 metalc ? ? A GLU 105 OE1 ? ? ? 1_555 D CA . CA ? ? A GLU 354 A CA 402 1_555 ? ? ? ? ? ? ? 2.327 ? ? metalc10 metalc ? ? A ASP 106 OD1 ? ? ? 1_555 C CA . CA ? ? A ASP 355 A CA 401 1_555 ? ? ? ? ? ? ? 2.521 ? ? metalc11 metalc ? ? A ASP 106 OD2 ? ? ? 1_555 E MG . MG ? ? A ASP 355 A MG 403 1_555 ? ? ? ? ? ? ? 2.096 ? ? metalc12 metalc ? ? A ASN 116 OD1 ? ? ? 1_555 D CA . CA ? ? A ASN 365 A CA 402 1_555 ? ? ? ? ? ? ? 2.440 ? ? metalc13 metalc ? ? A ASP 117 OD1 ? ? ? 1_555 D CA . CA ? ? A ASP 366 A CA 402 1_555 ? ? ? ? ? ? ? 2.325 ? ? metalc14 metalc ? ? A ASP 117 O ? ? ? 1_555 D CA . CA ? ? A ASP 366 A CA 402 1_555 ? ? ? ? ? ? ? 2.450 ? ? metalc15 metalc ? ? C CA . CA ? ? ? 1_555 F HOH . O ? ? A CA 401 A HOH 407 1_555 ? ? ? ? ? ? ? 2.250 ? ? metalc16 metalc ? ? D CA . CA ? ? ? 1_555 B FUC . O3 ? ? A CA 402 B FUC 3 1_555 ? ? ? ? ? ? ? 2.487 ? ? metalc17 metalc ? ? D CA . CA ? ? ? 1_555 B FUC . O4 ? ? A CA 402 B FUC 3 1_555 ? ? ? ? ? ? ? 2.393 ? ? metalc18 metalc ? ? E MG . MG ? ? ? 1_555 F HOH . O ? ? A MG 403 A HOH 404 1_555 ? ? ? ? ? ? ? 2.126 ? ? metalc19 metalc ? ? E MG . MG ? ? ? 1_555 F HOH . O ? ? A MG 403 A HOH 405 1_555 ? ? ? ? ? ? ? 2.058 ? ? metalc20 metalc ? ? E MG . MG ? ? ? 1_555 F HOH . O ? ? A MG 403 A HOH 406 1_555 ? ? ? ? ? ? ? 2.171 ? ? metalc21 metalc ? ? E MG . MG ? ? ? 1_555 F HOH . O ? ? A MG 403 A HOH 409 1_555 ? ? ? ? ? ? ? 2.193 ? ? metalc22 metalc ? ? E MG . MG ? ? ? 1_555 F HOH . O ? ? A MG 403 A HOH 410 1_555 ? ? ? ? ? ? ? 2.062 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? metalc ? ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id GLU _struct_mon_prot_cis.label_seq_id 98 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id GLU _struct_mon_prot_cis.auth_seq_id 347 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 99 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 348 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle -0.32 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 5 ? B ? 5 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? parallel A 4 5 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 THR A 12 ? PHE A 14 ? THR A 261 PHE A 263 A 2 ASN A 17 ? MET A 21 ? ASN A 266 MET A 270 A 3 PHE A 125 ? SER A 131 ? PHE A 374 SER A 380 A 4 THR A 65 ? SER A 70 ? THR A 314 SER A 319 A 5 GLN A 79 ? TRP A 80 ? GLN A 328 TRP A 329 B 1 GLN A 41 ? LEU A 42 ? GLN A 290 LEU A 291 B 2 PHE A 125 ? SER A 131 ? PHE A 374 SER A 380 B 3 THR A 65 ? SER A 70 ? THR A 314 SER A 319 B 4 CYS A 107 ? SER A 111 ? CYS A 356 SER A 360 B 5 GLY A 114 ? ASP A 118 ? GLY A 363 ASP A 367 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N THR A 12 ? N THR A 261 O TYR A 19 ? O TYR A 268 A 2 3 N CYS A 18 ? N CYS A 267 O LYS A 130 ? O LYS A 379 A 3 4 O PHE A 125 ? O PHE A 374 N TRP A 66 ? N TRP A 315 A 4 5 N SER A 70 ? N SER A 319 O GLN A 79 ? O GLN A 328 B 1 2 N GLN A 41 ? N GLN A 290 O LYS A 129 ? O LYS A 378 B 2 3 O PHE A 125 ? O PHE A 374 N TRP A 66 ? N TRP A 315 B 3 4 N THR A 65 ? N THR A 314 O PHE A 110 ? O PHE A 359 B 4 5 N SER A 111 ? N SER A 360 O GLY A 114 ? O GLY A 363 # _database_PDB_matrix.entry_id 1SL5 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1SL5 _atom_sites.fract_transf_matrix[1][1] 0.013781 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.018062 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.033748 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CA MG N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLU 1 250 ? ? ? A . n A 1 2 ARG 2 251 ? ? ? A . n A 1 3 LEU 3 252 ? ? ? A . n A 1 4 CYS 4 253 253 CYS CYS A . n A 1 5 HIS 5 254 254 HIS HIS A . n A 1 6 PRO 6 255 255 PRO PRO A . n A 1 7 CYS 7 256 256 CYS CYS A . n A 1 8 PRO 8 257 257 PRO PRO A . n A 1 9 TRP 9 258 258 TRP TRP A . n A 1 10 GLU 10 259 259 GLU GLU A . n A 1 11 TRP 11 260 260 TRP TRP A . n A 1 12 THR 12 261 261 THR THR A . n A 1 13 PHE 13 262 262 PHE PHE A . n A 1 14 PHE 14 263 263 PHE PHE A . n A 1 15 GLN 15 264 264 GLN GLN A . n A 1 16 GLY 16 265 265 GLY GLY A . n A 1 17 ASN 17 266 266 ASN ASN A . n A 1 18 CYS 18 267 267 CYS CYS A . n A 1 19 TYR 19 268 268 TYR TYR A . n A 1 20 PHE 20 269 269 PHE PHE A . n A 1 21 MET 21 270 270 MET MET A . n A 1 22 SER 22 271 271 SER SER A . n A 1 23 ASN 23 272 272 ASN ASN A . n A 1 24 SER 24 273 273 SER SER A . n A 1 25 GLN 25 274 274 GLN GLN A . n A 1 26 ARG 26 275 275 ARG ARG A . n A 1 27 ASN 27 276 276 ASN ASN A . n A 1 28 TRP 28 277 277 TRP TRP A . n A 1 29 HIS 29 278 278 HIS HIS A . n A 1 30 ASP 30 279 279 ASP ASP A . n A 1 31 SER 31 280 280 SER SER A . n A 1 32 ILE 32 281 281 ILE ILE A . n A 1 33 THR 33 282 282 THR THR A . n A 1 34 ALA 34 283 283 ALA ALA A . n A 1 35 CYS 35 284 284 CYS CYS A . n A 1 36 LYS 36 285 285 LYS LYS A . n A 1 37 GLU 37 286 286 GLU GLU A . n A 1 38 VAL 38 287 287 VAL VAL A . n A 1 39 GLY 39 288 288 GLY GLY A . n A 1 40 ALA 40 289 289 ALA ALA A . n A 1 41 GLN 41 290 290 GLN GLN A . n A 1 42 LEU 42 291 291 LEU LEU A . n A 1 43 VAL 43 292 292 VAL VAL A . n A 1 44 VAL 44 293 293 VAL VAL A . n A 1 45 ILE 45 294 294 ILE ILE A . n A 1 46 LYS 46 295 295 LYS LYS A . n A 1 47 SER 47 296 296 SER SER A . n A 1 48 ALA 48 297 297 ALA ALA A . n A 1 49 GLU 49 298 298 GLU GLU A . n A 1 50 GLU 50 299 299 GLU GLU A . n A 1 51 GLN 51 300 300 GLN GLN A . n A 1 52 ASN 52 301 301 ASN ASN A . n A 1 53 PHE 53 302 302 PHE PHE A . n A 1 54 LEU 54 303 303 LEU LEU A . n A 1 55 GLN 55 304 304 GLN GLN A . n A 1 56 LEU 56 305 305 LEU LEU A . n A 1 57 GLN 57 306 306 GLN GLN A . n A 1 58 SER 58 307 307 SER SER A . n A 1 59 SER 59 308 308 SER SER A . n A 1 60 ARG 60 309 309 ARG ARG A . n A 1 61 SER 61 310 310 SER SER A . n A 1 62 ASN 62 311 311 ASN ASN A . n A 1 63 ARG 63 312 312 ARG ARG A . n A 1 64 PHE 64 313 313 PHE PHE A . n A 1 65 THR 65 314 314 THR THR A . n A 1 66 TRP 66 315 315 TRP TRP A . n A 1 67 MET 67 316 316 MET MET A . n A 1 68 GLY 68 317 317 GLY GLY A . n A 1 69 LEU 69 318 318 LEU LEU A . n A 1 70 SER 70 319 319 SER SER A . n A 1 71 ASP 71 320 320 ASP ASP A . n A 1 72 LEU 72 321 321 LEU LEU A . n A 1 73 ASN 73 322 322 ASN ASN A . n A 1 74 GLN 74 323 323 GLN GLN A . n A 1 75 GLU 75 324 324 GLU GLU A . n A 1 76 GLY 76 325 325 GLY GLY A . n A 1 77 THR 77 326 326 THR THR A . n A 1 78 TRP 78 327 327 TRP TRP A . n A 1 79 GLN 79 328 328 GLN GLN A . n A 1 80 TRP 80 329 329 TRP TRP A . n A 1 81 VAL 81 330 330 VAL VAL A . n A 1 82 ASP 82 331 331 ASP ASP A . n A 1 83 GLY 83 332 332 GLY GLY A . n A 1 84 SER 84 333 333 SER SER A . n A 1 85 PRO 85 334 334 PRO PRO A . n A 1 86 LEU 86 335 335 LEU LEU A . n A 1 87 LEU 87 336 336 LEU LEU A . n A 1 88 PRO 88 337 337 PRO PRO A . n A 1 89 SER 89 338 338 SER SER A . n A 1 90 PHE 90 339 339 PHE PHE A . n A 1 91 LYS 91 340 340 LYS LYS A . n A 1 92 GLN 92 341 341 GLN GLN A . n A 1 93 TYR 93 342 342 TYR TYR A . n A 1 94 TRP 94 343 343 TRP TRP A . n A 1 95 ASN 95 344 344 ASN ASN A . n A 1 96 ARG 96 345 345 ARG ARG A . n A 1 97 GLY 97 346 346 GLY GLY A . n A 1 98 GLU 98 347 347 GLU GLU A . n A 1 99 PRO 99 348 348 PRO PRO A . n A 1 100 ASN 100 349 349 ASN ASN A . n A 1 101 ASN 101 350 350 ASN ASN A . n A 1 102 VAL 102 351 351 VAL VAL A . n A 1 103 GLY 103 352 352 GLY GLY A . n A 1 104 GLU 104 353 353 GLU GLU A . n A 1 105 GLU 105 354 354 GLU GLU A . n A 1 106 ASP 106 355 355 ASP ASP A . n A 1 107 CYS 107 356 356 CYS CYS A . n A 1 108 ALA 108 357 357 ALA ALA A . n A 1 109 GLU 109 358 358 GLU GLU A . n A 1 110 PHE 110 359 359 PHE PHE A . n A 1 111 SER 111 360 360 SER SER A . n A 1 112 GLY 112 361 361 GLY GLY A . n A 1 113 ASN 113 362 362 ASN ASN A . n A 1 114 GLY 114 363 363 GLY GLY A . n A 1 115 TRP 115 364 364 TRP TRP A . n A 1 116 ASN 116 365 365 ASN ASN A . n A 1 117 ASP 117 366 366 ASP ASP A . n A 1 118 ASP 118 367 367 ASP ASP A . n A 1 119 LYS 119 368 368 LYS LYS A . n A 1 120 CYS 120 369 369 CYS CYS A . n A 1 121 ASN 121 370 370 ASN ASN A . n A 1 122 LEU 122 371 371 LEU LEU A . n A 1 123 ALA 123 372 372 ALA ALA A . n A 1 124 LYS 124 373 373 LYS LYS A . n A 1 125 PHE 125 374 374 PHE PHE A . n A 1 126 TRP 126 375 375 TRP TRP A . n A 1 127 ILE 127 376 376 ILE ILE A . n A 1 128 CYS 128 377 377 CYS CYS A . n A 1 129 LYS 129 378 378 LYS LYS A . n A 1 130 LYS 130 379 379 LYS LYS A . n A 1 131 SER 131 380 380 SER SER A . n A 1 132 ALA 132 381 381 ALA ALA A . n A 1 133 ALA 133 382 382 ALA ALA A . n A 1 134 SER 134 383 383 SER SER A . n A 1 135 CYS 135 384 ? ? ? A . n A 1 136 SER 136 385 ? ? ? A . n A 1 137 ARG 137 386 ? ? ? A . n A 1 138 ASP 138 387 ? ? ? A . n A 1 139 GLU 139 388 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 CA 1 401 1 CA CA2 A . D 3 CA 1 402 2 CA CA2 A . E 4 MG 1 403 3 MG MG2 A . F 5 HOH 1 404 1 HOH TIP A . F 5 HOH 2 405 2 HOH TIP A . F 5 HOH 3 406 3 HOH TIP A . F 5 HOH 4 407 4 HOH TIP A . F 5 HOH 5 408 5 HOH TIP A . F 5 HOH 6 409 6 HOH TIP A . F 5 HOH 7 410 7 HOH TIP A . F 5 HOH 8 411 8 HOH TIP A . F 5 HOH 9 412 9 HOH TIP A . F 5 HOH 10 413 10 HOH TIP A . F 5 HOH 11 414 11 HOH TIP A . F 5 HOH 12 415 12 HOH TIP A . F 5 HOH 13 416 13 HOH TIP A . F 5 HOH 14 417 14 HOH TIP A . F 5 HOH 15 418 15 HOH TIP A . F 5 HOH 16 419 16 HOH TIP A . F 5 HOH 17 420 17 HOH TIP A . F 5 HOH 18 421 18 HOH TIP A . F 5 HOH 19 422 19 HOH TIP A . F 5 HOH 20 423 20 HOH TIP A . F 5 HOH 21 424 21 HOH TIP A . F 5 HOH 22 425 22 HOH TIP A . F 5 HOH 23 426 23 HOH TIP A . F 5 HOH 24 427 24 HOH TIP A . F 5 HOH 25 428 25 HOH TIP A . F 5 HOH 26 429 26 HOH TIP A . F 5 HOH 27 430 27 HOH TIP A . F 5 HOH 28 431 28 HOH TIP A . F 5 HOH 29 432 29 HOH TIP A . F 5 HOH 30 433 30 HOH TIP A . F 5 HOH 31 434 31 HOH TIP A . F 5 HOH 32 435 32 HOH TIP A . F 5 HOH 33 436 33 HOH TIP A . F 5 HOH 34 437 34 HOH TIP A . F 5 HOH 35 438 35 HOH TIP A . F 5 HOH 36 439 36 HOH TIP A . F 5 HOH 37 440 37 HOH TIP A . F 5 HOH 38 441 38 HOH TIP A . F 5 HOH 39 442 39 HOH TIP A . F 5 HOH 40 443 40 HOH TIP A . F 5 HOH 41 444 41 HOH TIP A . F 5 HOH 42 445 42 HOH TIP A . F 5 HOH 43 446 43 HOH TIP A . F 5 HOH 44 447 44 HOH TIP A . F 5 HOH 45 448 45 HOH TIP A . F 5 HOH 46 449 46 HOH TIP A . F 5 HOH 47 450 47 HOH TIP A . F 5 HOH 48 451 48 HOH TIP A . F 5 HOH 49 452 49 HOH TIP A . F 5 HOH 50 453 50 HOH TIP A . F 5 HOH 51 454 51 HOH TIP A . F 5 HOH 52 455 52 HOH TIP A . F 5 HOH 53 456 53 HOH TIP A . F 5 HOH 54 457 54 HOH TIP A . F 5 HOH 55 458 55 HOH TIP A . F 5 HOH 56 459 56 HOH TIP A . F 5 HOH 57 460 57 HOH TIP A . F 5 HOH 58 461 58 HOH TIP A . F 5 HOH 59 462 59 HOH TIP A . F 5 HOH 60 463 60 HOH TIP A . F 5 HOH 61 464 61 HOH TIP A . F 5 HOH 62 465 62 HOH TIP A . F 5 HOH 63 466 63 HOH TIP A . F 5 HOH 64 467 64 HOH TIP A . F 5 HOH 65 468 65 HOH TIP A . F 5 HOH 66 469 66 HOH TIP A . F 5 HOH 67 470 67 HOH TIP A . F 5 HOH 68 471 68 HOH TIP A . F 5 HOH 69 472 69 HOH TIP A . F 5 HOH 70 473 70 HOH TIP A . F 5 HOH 71 474 71 HOH TIP A . F 5 HOH 72 475 72 HOH TIP A . F 5 HOH 73 476 73 HOH TIP A . F 5 HOH 74 477 74 HOH TIP A . F 5 HOH 75 478 75 HOH TIP A . F 5 HOH 76 479 76 HOH TIP A . F 5 HOH 77 480 77 HOH TIP A . F 5 HOH 78 481 78 HOH TIP A . F 5 HOH 79 482 79 HOH TIP A . F 5 HOH 80 483 80 HOH TIP A . F 5 HOH 81 484 81 HOH TIP A . F 5 HOH 82 485 82 HOH TIP A . F 5 HOH 83 486 83 HOH TIP A . F 5 HOH 84 487 84 HOH TIP A . F 5 HOH 85 488 85 HOH TIP A . F 5 HOH 86 489 86 HOH TIP A . F 5 HOH 87 490 87 HOH TIP A . F 5 HOH 88 491 88 HOH TIP A . F 5 HOH 89 492 89 HOH TIP A . F 5 HOH 90 493 90 HOH TIP A . F 5 HOH 91 494 91 HOH TIP A . F 5 HOH 92 495 92 HOH TIP A . F 5 HOH 93 496 93 HOH TIP A . F 5 HOH 94 497 94 HOH TIP A . F 5 HOH 95 498 95 HOH TIP A . F 5 HOH 96 499 96 HOH TIP A . F 5 HOH 97 500 97 HOH TIP A . F 5 HOH 98 501 98 HOH TIP A . F 5 HOH 99 502 99 HOH TIP A . F 5 HOH 100 503 100 HOH TIP A . F 5 HOH 101 504 101 HOH TIP A . F 5 HOH 102 505 102 HOH TIP A . F 5 HOH 103 506 103 HOH TIP A . F 5 HOH 104 507 104 HOH TIP A . F 5 HOH 105 508 105 HOH TIP A . F 5 HOH 106 509 106 HOH TIP A . F 5 HOH 107 510 107 HOH TIP A . F 5 HOH 108 511 108 HOH TIP A . F 5 HOH 109 512 109 HOH TIP A . F 5 HOH 110 513 110 HOH TIP A . F 5 HOH 111 514 111 HOH TIP A . F 5 HOH 112 515 112 HOH TIP A . F 5 HOH 113 516 113 HOH TIP A . F 5 HOH 114 517 114 HOH TIP A . F 5 HOH 115 518 115 HOH TIP A . F 5 HOH 116 519 116 HOH TIP A . F 5 HOH 117 520 117 HOH TIP A . F 5 HOH 118 521 118 HOH TIP A . F 5 HOH 119 522 119 HOH TIP A . F 5 HOH 120 523 120 HOH TIP A . F 5 HOH 121 524 121 HOH TIP A . F 5 HOH 122 525 122 HOH TIP A . F 5 HOH 123 526 123 HOH TIP A . F 5 HOH 124 527 124 HOH TIP A . F 5 HOH 125 528 125 HOH TIP A . F 5 HOH 126 529 126 HOH TIP A . F 5 HOH 127 530 127 HOH TIP A . F 5 HOH 128 531 128 HOH TIP A . F 5 HOH 129 532 129 HOH TIP A . F 5 HOH 130 533 130 HOH TIP A . F 5 HOH 131 534 131 HOH TIP A . F 5 HOH 132 535 132 HOH TIP A . F 5 HOH 133 536 133 HOH TIP A . F 5 HOH 134 537 134 HOH TIP A . F 5 HOH 135 538 135 HOH TIP A . F 5 HOH 136 539 136 HOH TIP A . F 5 HOH 137 540 137 HOH TIP A . F 5 HOH 138 541 138 HOH TIP A . F 5 HOH 139 542 139 HOH TIP A . F 5 HOH 140 543 140 HOH TIP A . F 5 HOH 141 544 141 HOH TIP A . F 5 HOH 142 545 142 HOH TIP A . F 5 HOH 143 546 143 HOH TIP A . F 5 HOH 144 547 144 HOH TIP A . F 5 HOH 145 548 145 HOH TIP A . F 5 HOH 146 549 146 HOH TIP A . F 5 HOH 147 550 147 HOH TIP A . F 5 HOH 148 551 148 HOH TIP A . F 5 HOH 149 552 149 HOH TIP A . F 5 HOH 150 553 150 HOH TIP A . F 5 HOH 151 554 151 HOH TIP A . F 5 HOH 152 555 152 HOH TIP A . F 5 HOH 153 556 153 HOH TIP A . F 5 HOH 154 557 154 HOH TIP A . F 5 HOH 155 558 155 HOH TIP A . F 5 HOH 156 559 156 HOH TIP A . F 5 HOH 157 560 157 HOH TIP A . F 5 HOH 158 561 158 HOH TIP A . F 5 HOH 159 562 159 HOH TIP A . F 5 HOH 160 563 160 HOH TIP A . F 5 HOH 161 564 161 HOH TIP A . F 5 HOH 162 565 162 HOH TIP A . F 5 HOH 163 566 163 HOH TIP A . F 5 HOH 164 567 164 HOH TIP A . F 5 HOH 165 568 165 HOH TIP A . F 5 HOH 166 569 166 HOH TIP A . F 5 HOH 167 570 167 HOH TIP A . F 5 HOH 168 571 168 HOH TIP A . F 5 HOH 169 572 169 HOH TIP A . F 5 HOH 170 573 170 HOH TIP A . F 5 HOH 171 574 171 HOH TIP A . F 5 HOH 172 575 172 HOH TIP A . F 5 HOH 173 576 173 HOH TIP A . F 5 HOH 174 577 174 HOH TIP A . F 5 HOH 175 578 175 HOH TIP A . F 5 HOH 176 579 176 HOH TIP A . F 5 HOH 177 580 177 HOH TIP A . F 5 HOH 178 581 178 HOH TIP A . F 5 HOH 179 582 179 HOH TIP A . F 5 HOH 180 583 180 HOH TIP A . F 5 HOH 181 584 181 HOH TIP A . F 5 HOH 182 585 182 HOH TIP A . F 5 HOH 183 586 183 HOH TIP A . F 5 HOH 184 587 184 HOH TIP A . F 5 HOH 185 588 185 HOH TIP A . F 5 HOH 186 589 186 HOH TIP A . F 5 HOH 187 590 187 HOH TIP A . F 5 HOH 188 591 188 HOH TIP A . F 5 HOH 189 592 189 HOH TIP A . F 5 HOH 190 593 190 HOH TIP A . F 5 HOH 191 594 191 HOH TIP A . F 5 HOH 192 595 192 HOH TIP A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OD1 ? A ASP 71 ? A ASP 320 ? 1_555 CA ? C CA . ? A CA 401 ? 1_555 OD2 ? A ASP 71 ? A ASP 320 ? 1_555 49.9 ? 2 OD1 ? A ASP 71 ? A ASP 320 ? 1_555 CA ? C CA . ? A CA 401 ? 1_555 OE2 ? A GLU 75 ? A GLU 324 ? 1_555 121.4 ? 3 OD2 ? A ASP 71 ? A ASP 320 ? 1_555 CA ? C CA . ? A CA 401 ? 1_555 OE2 ? A GLU 75 ? A GLU 324 ? 1_555 74.2 ? 4 OD1 ? A ASP 71 ? A ASP 320 ? 1_555 CA ? C CA . ? A CA 401 ? 1_555 OE1 ? A GLU 75 ? A GLU 324 ? 1_555 93.1 ? 5 OD2 ? A ASP 71 ? A ASP 320 ? 1_555 CA ? C CA . ? A CA 401 ? 1_555 OE1 ? A GLU 75 ? A GLU 324 ? 1_555 77.0 ? 6 OE2 ? A GLU 75 ? A GLU 324 ? 1_555 CA ? C CA . ? A CA 401 ? 1_555 OE1 ? A GLU 75 ? A GLU 324 ? 1_555 53.8 ? 7 OD1 ? A ASP 71 ? A ASP 320 ? 1_555 CA ? C CA . ? A CA 401 ? 1_555 OD1 ? A ASN 101 ? A ASN 350 ? 1_555 155.1 ? 8 OD2 ? A ASP 71 ? A ASP 320 ? 1_555 CA ? C CA . ? A CA 401 ? 1_555 OD1 ? A ASN 101 ? A ASN 350 ? 1_555 152.7 ? 9 OE2 ? A GLU 75 ? A GLU 324 ? 1_555 CA ? C CA . ? A CA 401 ? 1_555 OD1 ? A ASN 101 ? A ASN 350 ? 1_555 78.4 ? 10 OE1 ? A GLU 75 ? A GLU 324 ? 1_555 CA ? C CA . ? A CA 401 ? 1_555 OD1 ? A ASN 101 ? A ASN 350 ? 1_555 87.4 ? 11 OD1 ? A ASP 71 ? A ASP 320 ? 1_555 CA ? C CA . ? A CA 401 ? 1_555 O ? A GLU 105 ? A GLU 354 ? 1_555 89.6 ? 12 OD2 ? A ASP 71 ? A ASP 320 ? 1_555 CA ? C CA . ? A CA 401 ? 1_555 O ? A GLU 105 ? A GLU 354 ? 1_555 126.0 ? 13 OE2 ? A GLU 75 ? A GLU 324 ? 1_555 CA ? C CA . ? A CA 401 ? 1_555 O ? A GLU 105 ? A GLU 354 ? 1_555 144.7 ? 14 OE1 ? A GLU 75 ? A GLU 324 ? 1_555 CA ? C CA . ? A CA 401 ? 1_555 O ? A GLU 105 ? A GLU 354 ? 1_555 149.1 ? 15 OD1 ? A ASN 101 ? A ASN 350 ? 1_555 CA ? C CA . ? A CA 401 ? 1_555 O ? A GLU 105 ? A GLU 354 ? 1_555 77.7 ? 16 OD1 ? A ASP 71 ? A ASP 320 ? 1_555 CA ? C CA . ? A CA 401 ? 1_555 OD1 ? A ASP 106 ? A ASP 355 ? 1_555 76.8 ? 17 OD2 ? A ASP 71 ? A ASP 320 ? 1_555 CA ? C CA . ? A CA 401 ? 1_555 OD1 ? A ASP 106 ? A ASP 355 ? 1_555 117.9 ? 18 OE2 ? A GLU 75 ? A GLU 324 ? 1_555 CA ? C CA . ? A CA 401 ? 1_555 OD1 ? A ASP 106 ? A ASP 355 ? 1_555 125.9 ? 19 OE1 ? A GLU 75 ? A GLU 324 ? 1_555 CA ? C CA . ? A CA 401 ? 1_555 OD1 ? A ASP 106 ? A ASP 355 ? 1_555 76.7 ? 20 OD1 ? A ASN 101 ? A ASN 350 ? 1_555 CA ? C CA . ? A CA 401 ? 1_555 OD1 ? A ASP 106 ? A ASP 355 ? 1_555 79.1 ? 21 O ? A GLU 105 ? A GLU 354 ? 1_555 CA ? C CA . ? A CA 401 ? 1_555 OD1 ? A ASP 106 ? A ASP 355 ? 1_555 74.0 ? 22 OD1 ? A ASP 71 ? A ASP 320 ? 1_555 CA ? C CA . ? A CA 401 ? 1_555 O ? F HOH . ? A HOH 407 ? 1_555 112.8 ? 23 OD2 ? A ASP 71 ? A ASP 320 ? 1_555 CA ? C CA . ? A CA 401 ? 1_555 O ? F HOH . ? A HOH 407 ? 1_555 91.8 ? 24 OE2 ? A GLU 75 ? A GLU 324 ? 1_555 CA ? C CA . ? A CA 401 ? 1_555 O ? F HOH . ? A HOH 407 ? 1_555 81.0 ? 25 OE1 ? A GLU 75 ? A GLU 324 ? 1_555 CA ? C CA . ? A CA 401 ? 1_555 O ? F HOH . ? A HOH 407 ? 1_555 134.8 ? 26 OD1 ? A ASN 101 ? A ASN 350 ? 1_555 CA ? C CA . ? A CA 401 ? 1_555 O ? F HOH . ? A HOH 407 ? 1_555 83.4 ? 27 O ? A GLU 105 ? A GLU 354 ? 1_555 CA ? C CA . ? A CA 401 ? 1_555 O ? F HOH . ? A HOH 407 ? 1_555 70.7 ? 28 OD1 ? A ASP 106 ? A ASP 355 ? 1_555 CA ? C CA . ? A CA 401 ? 1_555 O ? F HOH . ? A HOH 407 ? 1_555 143.1 ? 29 OE1 ? A GLU 98 ? A GLU 347 ? 1_555 CA ? D CA . ? A CA 402 ? 1_555 OD1 ? A ASN 100 ? A ASN 349 ? 1_555 78.0 ? 30 OE1 ? A GLU 98 ? A GLU 347 ? 1_555 CA ? D CA . ? A CA 402 ? 1_555 OE1 ? A GLU 105 ? A GLU 354 ? 1_555 147.5 ? 31 OD1 ? A ASN 100 ? A ASN 349 ? 1_555 CA ? D CA . ? A CA 402 ? 1_555 OE1 ? A GLU 105 ? A GLU 354 ? 1_555 74.1 ? 32 OE1 ? A GLU 98 ? A GLU 347 ? 1_555 CA ? D CA . ? A CA 402 ? 1_555 OD1 ? A ASN 116 ? A ASN 365 ? 1_555 66.9 ? 33 OD1 ? A ASN 100 ? A ASN 349 ? 1_555 CA ? D CA . ? A CA 402 ? 1_555 OD1 ? A ASN 116 ? A ASN 365 ? 1_555 143.9 ? 34 OE1 ? A GLU 105 ? A GLU 354 ? 1_555 CA ? D CA . ? A CA 402 ? 1_555 OD1 ? A ASN 116 ? A ASN 365 ? 1_555 141.9 ? 35 OE1 ? A GLU 98 ? A GLU 347 ? 1_555 CA ? D CA . ? A CA 402 ? 1_555 OD1 ? A ASP 117 ? A ASP 366 ? 1_555 70.9 ? 36 OD1 ? A ASN 100 ? A ASN 349 ? 1_555 CA ? D CA . ? A CA 402 ? 1_555 OD1 ? A ASP 117 ? A ASP 366 ? 1_555 85.4 ? 37 OE1 ? A GLU 105 ? A GLU 354 ? 1_555 CA ? D CA . ? A CA 402 ? 1_555 OD1 ? A ASP 117 ? A ASP 366 ? 1_555 90.4 ? 38 OD1 ? A ASN 116 ? A ASN 365 ? 1_555 CA ? D CA . ? A CA 402 ? 1_555 OD1 ? A ASP 117 ? A ASP 366 ? 1_555 90.6 ? 39 OE1 ? A GLU 98 ? A GLU 347 ? 1_555 CA ? D CA . ? A CA 402 ? 1_555 O ? A ASP 117 ? A ASP 366 ? 1_555 122.7 ? 40 OD1 ? A ASN 100 ? A ASN 349 ? 1_555 CA ? D CA . ? A CA 402 ? 1_555 O ? A ASP 117 ? A ASP 366 ? 1_555 137.9 ? 41 OE1 ? A GLU 105 ? A GLU 354 ? 1_555 CA ? D CA . ? A CA 402 ? 1_555 O ? A ASP 117 ? A ASP 366 ? 1_555 71.9 ? 42 OD1 ? A ASN 116 ? A ASN 365 ? 1_555 CA ? D CA . ? A CA 402 ? 1_555 O ? A ASP 117 ? A ASP 366 ? 1_555 72.6 ? 43 OD1 ? A ASP 117 ? A ASP 366 ? 1_555 CA ? D CA . ? A CA 402 ? 1_555 O ? A ASP 117 ? A ASP 366 ? 1_555 70.8 ? 44 OE1 ? A GLU 98 ? A GLU 347 ? 1_555 CA ? D CA . ? A CA 402 ? 1_555 O3 ? B FUC . ? B FUC 3 ? 1_555 135.4 ? 45 OD1 ? A ASN 100 ? A ASN 349 ? 1_555 CA ? D CA . ? A CA 402 ? 1_555 O3 ? B FUC . ? B FUC 3 ? 1_555 118.6 ? 46 OE1 ? A GLU 105 ? A GLU 354 ? 1_555 CA ? D CA . ? A CA 402 ? 1_555 O3 ? B FUC . ? B FUC 3 ? 1_555 74.1 ? 47 OD1 ? A ASN 116 ? A ASN 365 ? 1_555 CA ? D CA . ? A CA 402 ? 1_555 O3 ? B FUC . ? B FUC 3 ? 1_555 83.7 ? 48 OD1 ? A ASP 117 ? A ASP 366 ? 1_555 CA ? D CA . ? A CA 402 ? 1_555 O3 ? B FUC . ? B FUC 3 ? 1_555 144.9 ? 49 O ? A ASP 117 ? A ASP 366 ? 1_555 CA ? D CA . ? A CA 402 ? 1_555 O3 ? B FUC . ? B FUC 3 ? 1_555 74.4 ? 50 OE1 ? A GLU 98 ? A GLU 347 ? 1_555 CA ? D CA . ? A CA 402 ? 1_555 O4 ? B FUC . ? B FUC 3 ? 1_555 71.0 ? 51 OD1 ? A ASN 100 ? A ASN 349 ? 1_555 CA ? D CA . ? A CA 402 ? 1_555 O4 ? B FUC . ? B FUC 3 ? 1_555 84.8 ? 52 OE1 ? A GLU 105 ? A GLU 354 ? 1_555 CA ? D CA . ? A CA 402 ? 1_555 O4 ? B FUC . ? B FUC 3 ? 1_555 121.8 ? 53 OD1 ? A ASN 116 ? A ASN 365 ? 1_555 CA ? D CA . ? A CA 402 ? 1_555 O4 ? B FUC . ? B FUC 3 ? 1_555 76.4 ? 54 OD1 ? A ASP 117 ? A ASP 366 ? 1_555 CA ? D CA . ? A CA 402 ? 1_555 O4 ? B FUC . ? B FUC 3 ? 1_555 141.8 ? 55 O ? A ASP 117 ? A ASP 366 ? 1_555 CA ? D CA . ? A CA 402 ? 1_555 O4 ? B FUC . ? B FUC 3 ? 1_555 134.7 ? 56 O3 ? B FUC . ? B FUC 3 ? 1_555 CA ? D CA . ? A CA 402 ? 1_555 O4 ? B FUC . ? B FUC 3 ? 1_555 70.1 ? 57 OD2 ? A ASP 106 ? A ASP 355 ? 1_555 MG ? E MG . ? A MG 403 ? 1_555 O ? F HOH . ? A HOH 404 ? 1_555 96.5 ? 58 OD2 ? A ASP 106 ? A ASP 355 ? 1_555 MG ? E MG . ? A MG 403 ? 1_555 O ? F HOH . ? A HOH 405 ? 1_555 87.1 ? 59 O ? F HOH . ? A HOH 404 ? 1_555 MG ? E MG . ? A MG 403 ? 1_555 O ? F HOH . ? A HOH 405 ? 1_555 91.3 ? 60 OD2 ? A ASP 106 ? A ASP 355 ? 1_555 MG ? E MG . ? A MG 403 ? 1_555 O ? F HOH . ? A HOH 406 ? 1_555 84.5 ? 61 O ? F HOH . ? A HOH 404 ? 1_555 MG ? E MG . ? A MG 403 ? 1_555 O ? F HOH . ? A HOH 406 ? 1_555 177.8 ? 62 O ? F HOH . ? A HOH 405 ? 1_555 MG ? E MG . ? A MG 403 ? 1_555 O ? F HOH . ? A HOH 406 ? 1_555 90.7 ? 63 OD2 ? A ASP 106 ? A ASP 355 ? 1_555 MG ? E MG . ? A MG 403 ? 1_555 O ? F HOH . ? A HOH 409 ? 1_555 177.1 ? 64 O ? F HOH . ? A HOH 404 ? 1_555 MG ? E MG . ? A MG 403 ? 1_555 O ? F HOH . ? A HOH 409 ? 1_555 86.3 ? 65 O ? F HOH . ? A HOH 405 ? 1_555 MG ? E MG . ? A MG 403 ? 1_555 O ? F HOH . ? A HOH 409 ? 1_555 92.3 ? 66 O ? F HOH . ? A HOH 406 ? 1_555 MG ? E MG . ? A MG 403 ? 1_555 O ? F HOH . ? A HOH 409 ? 1_555 92.6 ? 67 OD2 ? A ASP 106 ? A ASP 355 ? 1_555 MG ? E MG . ? A MG 403 ? 1_555 O ? F HOH . ? A HOH 410 ? 1_555 89.5 ? 68 O ? F HOH . ? A HOH 404 ? 1_555 MG ? E MG . ? A MG 403 ? 1_555 O ? F HOH . ? A HOH 410 ? 1_555 92.9 ? 69 O ? F HOH . ? A HOH 405 ? 1_555 MG ? E MG . ? A MG 403 ? 1_555 O ? F HOH . ? A HOH 410 ? 1_555 174.9 ? 70 O ? F HOH . ? A HOH 406 ? 1_555 MG ? E MG . ? A MG 403 ? 1_555 O ? F HOH . ? A HOH 410 ? 1_555 85.2 ? 71 O ? F HOH . ? A HOH 409 ? 1_555 MG ? E MG . ? A MG 403 ? 1_555 O ? F HOH . ? A HOH 410 ? 1_555 91.0 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2004-06-15 2 'Structure model' 1 1 2008-04-29 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 2 0 2020-07-29 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 4 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Non-polymer description' 3 3 'Structure model' 'Version format compliance' 4 4 'Structure model' 'Atomic model' 5 4 'Structure model' 'Data collection' 6 4 'Structure model' 'Derived calculations' 7 4 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' atom_site 2 4 'Structure model' chem_comp 3 4 'Structure model' entity 4 4 'Structure model' pdbx_branch_scheme 5 4 'Structure model' pdbx_chem_comp_identifier 6 4 'Structure model' pdbx_entity_branch 7 4 'Structure model' pdbx_entity_branch_descriptor 8 4 'Structure model' pdbx_entity_branch_link 9 4 'Structure model' pdbx_entity_branch_list 10 4 'Structure model' pdbx_entity_nonpoly 11 4 'Structure model' pdbx_nonpoly_scheme 12 4 'Structure model' pdbx_struct_assembly_gen 13 4 'Structure model' pdbx_struct_conn_angle 14 4 'Structure model' struct_asym 15 4 'Structure model' struct_conn 16 4 'Structure model' struct_site 17 4 'Structure model' struct_site_gen # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_atom_site.B_iso_or_equiv' 2 4 'Structure model' '_atom_site.Cartn_x' 3 4 'Structure model' '_atom_site.Cartn_y' 4 4 'Structure model' '_atom_site.Cartn_z' 5 4 'Structure model' '_atom_site.auth_asym_id' 6 4 'Structure model' '_atom_site.auth_atom_id' 7 4 'Structure model' '_atom_site.auth_comp_id' 8 4 'Structure model' '_atom_site.auth_seq_id' 9 4 'Structure model' '_atom_site.label_asym_id' 10 4 'Structure model' '_atom_site.label_atom_id' 11 4 'Structure model' '_atom_site.label_comp_id' 12 4 'Structure model' '_atom_site.label_entity_id' 13 4 'Structure model' '_atom_site.type_symbol' 14 4 'Structure model' '_chem_comp.name' 15 4 'Structure model' '_chem_comp.type' 16 4 'Structure model' '_pdbx_struct_assembly_gen.asym_id_list' 17 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_asym_id' 18 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 19 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 20 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 21 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 22 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 23 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 24 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 25 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_asym_id' 26 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 27 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 28 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 29 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 30 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 31 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 32 4 'Structure model' '_pdbx_struct_conn_angle.value' 33 4 'Structure model' '_struct_conn.pdbx_dist_value' 34 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 35 4 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 36 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 37 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 38 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 39 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 40 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 41 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 42 4 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 43 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 44 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 45 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 46 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 47 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 48 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CNS refinement 1.1 ? 1 DENZO 'data reduction' . ? 2 SCALEPACK 'data scaling' . ? 3 AMoRE phasing . ? 4 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 GLU A 259 ? ? 81.29 -10.22 2 1 GLN A 264 ? ? 34.37 60.04 3 1 ALA A 289 ? ? -126.52 -165.86 4 1 VAL A 292 ? ? -35.35 119.34 5 1 GLU A 353 ? ? 71.39 94.27 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLU 250 ? A GLU 1 2 1 Y 1 A ARG 251 ? A ARG 2 3 1 Y 1 A LEU 252 ? A LEU 3 4 1 Y 1 A CYS 384 ? A CYS 135 5 1 Y 1 A SER 385 ? A SER 136 6 1 Y 1 A ARG 386 ? A ARG 137 7 1 Y 1 A ASP 387 ? A ASP 138 8 1 Y 1 A GLU 388 ? A GLU 139 # loop_ _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_mon_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.hetero B 2 GAL 1 B GAL 1 C GAL 4 n B 2 NAG 2 B NAG 2 C NAG 2 n B 2 FUC 3 B FUC 3 C FUC 3 n B 2 GAL 4 B GAL 4 C GAL 1 n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier FUC 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 LFucpa FUC 'COMMON NAME' GMML 1.0 a-L-fucopyranose FUC 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 a-L-Fucp FUC 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Fuc GAL 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGalpb GAL 'COMMON NAME' GMML 1.0 b-D-galactopyranose GAL 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-Galp GAL 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Gal NAG 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpNAcb NAG 'COMMON NAME' GMML 1.0 N-acetyl-b-D-glucopyranosamine NAG 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-GlcpNAc NAG 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 GlcNAc # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_descriptor.ordinal _pdbx_entity_branch_descriptor.entity_id _pdbx_entity_branch_descriptor.descriptor _pdbx_entity_branch_descriptor.type _pdbx_entity_branch_descriptor.program _pdbx_entity_branch_descriptor.program_version 1 2 'LFucpa1-3[DGalpb1-4]DGlcpNAcb1-3DGalpb1-ROH' 'Glycam Condensed Sequence' GMML 1.0 2 2 'WURCS=2.0/3,4,3/[a2112h-1b_1-5][a2122h-1b_1-5_2*NCC/3=O][a1221m-1a_1-5]/1-2-3-1/a3-b1_b3-c1_b4-d1' WURCS PDB2Glycan 1.1.0 3 2 '[][b-D-Galp]{[(3+1)][b-D-GlcpNAc]{[(3+1)][a-L-Fucp]{}[(4+1)][b-D-Galp]{}}}' LINUCS PDB-CARE ? # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.value_order _pdbx_entity_branch_link.details 1 2 2 NAG C1 O1 1 GAL O3 HO3 sing ? 2 2 3 FUC C1 O1 2 NAG O3 HO3 sing ? 3 2 4 GAL C1 O1 2 NAG O4 HO4 sing ? # loop_ _pdbx_entity_branch_list.entity_id _pdbx_entity_branch_list.comp_id _pdbx_entity_branch_list.num _pdbx_entity_branch_list.hetero 2 GAL 1 n 2 NAG 2 n 2 FUC 3 n 2 GAL 4 n # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'CALCIUM ION' CA 4 'MAGNESIUM ION' MG 5 water HOH #