HEADER HYDROLASE 03-AUG-95 1SLM TITLE CRYSTAL STRUCTURE OF FIBROBLAST STROMELYSIN-1: THE C-TRUNCATED HUMAN TITLE 2 PROENZYME COMPND MOL_ID: 1; COMPND 2 MOLECULE: STROMELYSIN-1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: PROPEPTIDE, CATALYTIC; COMPND 5 SYNONYM: MATRIX METALLOPROTEINASE-3, PROTEOGLYCANASE; COMPND 6 EC: 3.4.24.17; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 CELL: FIBROBLAST; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HYDROLASE, METALLOPROTEASE, FIBROBLAST, COLLAGEN DEGRADATION EXPDTA X-RAY DIFFRACTION AUTHOR J.W.BECKER REVDAT 7 14-FEB-24 1SLM 1 REMARK LINK REVDAT 6 29-NOV-17 1SLM 1 HELIX REVDAT 5 29-FEB-12 1SLM 1 JRNL REVDAT 4 16-NOV-11 1SLM 1 VERSN HETATM REVDAT 3 24-FEB-09 1SLM 1 VERSN REVDAT 2 01-APR-03 1SLM 1 JRNL REVDAT 1 17-DEC-96 1SLM 0 JRNL AUTH J.W.BECKER,A.I.MARCY,L.L.ROKOSZ,M.G.AXEL,J.J.BURBAUM, JRNL AUTH 2 P.M.FITZGERALD,P.M.CAMERON,C.K.ESSER,W.K.HAGMANN,J.D.HERMES, JRNL AUTH 3 J.P.SPRINGER JRNL TITL STROMELYSIN-1: THREE-DIMENSIONAL STRUCTURE OF THE INHIBITED JRNL TITL 2 CATALYTIC DOMAIN AND OF THE C-TRUNCATED PROENZYME. JRNL REF PROTEIN SCI. V. 4 1966 1995 JRNL REFN ISSN 0961-8368 JRNL PMID 8535233 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH P.R.GOOLEY,J.F.O'CONNELL,A.I.MARCY,G.C.CUCA,S.P.SALOWE, REMARK 1 AUTH 2 B.L.BUSH,J.D.HERMES,C.K.ESSER,W.K.HAGMANN,J.P.SPRINGER, REMARK 1 AUTH 3 B.A.JOHNSON REMARK 1 TITL THE NMR STRUCTURE OF THE INHIBITED CATALYTIC DOMAIN OF HUMAN REMARK 1 TITL 2 STROMELYSIN-1 REMARK 1 REF NAT.STRUCT.BIOL. V. 1 111 1994 REMARK 1 REFN ISSN 1072-8368 REMARK 1 REFERENCE 2 REMARK 1 AUTH K.T.CHAPMAN,I.E.KOPKA,P.L.DURETTE,C.K.ESSER,T.J.LANZA, REMARK 1 AUTH 2 M.IZQUIERDO-MARTIN,L.NIEDZWIECKI,B.CHANG,R.K.HARRISON, REMARK 1 AUTH 3 D.W.KUO,T.-T.LIN,R.L.STEIN,W.K.HAGMANN REMARK 1 TITL INHIBITION OF MATRIX METALLOPROTEINASES BY N-CARBOXYALKYL REMARK 1 TITL 2 PEPTIDES REMARK 1 REF J.MED.CHEM. V. 36 4293 1993 REMARK 1 REFN ISSN 0022-2623 REMARK 1 REFERENCE 3 REMARK 1 AUTH A.I.MARCY,L.L.EIBERGER,R.HARRISON,H.K.CHAN,N.I.HUTCHINSON, REMARK 1 AUTH 2 W.K.HAGMANN,P.M.CAMERON,D.A.BOULTON,J.D.HERMES REMARK 1 TITL HUMAN FIBROBLAST STROMELYSIN CATALYTIC DOMAIN: EXPRESSION, REMARK 1 TITL 2 PURIFICATION, AND CHARACTERIZATION OF A C-TERMINALLY REMARK 1 TITL 3 TRUNCATED FORM REMARK 1 REF BIOCHEMISTRY V. 30 6476 1991 REMARK 1 REFN ISSN 0006-2960 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.1 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 83.3 REMARK 3 NUMBER OF REFLECTIONS : 20541 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE-R REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.219 REMARK 3 FREE R VALUE : 0.256 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.900 REMARK 3 FREE R VALUE TEST SET COUNT : 2035 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.97 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 55.10 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 1195 REMARK 3 BIN R VALUE (WORKING SET) : 0.3309 REMARK 3 BIN FREE R VALUE : 0.3546 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 6.60 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 161 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1804 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 4 REMARK 3 SOLVENT ATOMS : 119 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.70 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.009 REMARK 3 BOND ANGLES (DEGREES) : 1.330 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 23.20 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.300 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1SLM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000176415. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-MAR-93 REMARK 200 TEMPERATURE (KELVIN) : 298 REMARK 200 PH : 5.8-6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RUH2R REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : GRAPHITE(002) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU REMARK 200 INTENSITY-INTEGRATION SOFTWARE : R-AXIS REMARK 200 DATA SCALING SOFTWARE : R-AXIS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24169 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 200 DATA REDUNDANCY : 2.820 REMARK 200 R MERGE (I) : 0.04480 REMARK 200 R SYM (I) : 0.05550 REMARK 200 FOR THE DATA SET : 8.2900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.450 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: X-PLOR 3.1 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.69 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: HANGING DROP VAPOR DIFFUSION. 2.0 REMARK 280 MICROLITER DROPS OF PROENZYME SOLUTION (10 MG/ML PROTEIN, 5.0 REMARK 280 MILLIMOLAR CALCIUM CHLORIDE, 50 MICROMOLAR ZINC ACETATE, 0.02% REMARK 280 SODIUM AZIDE, 20 MILLIMOLAR MES, PH 6.5, 0.02 MOLE INHIBITOR PER REMARK 280 MOLE PROENZYME) WERE MIXED WITH AN EQUAL VOLUME OF RESERVOIR REMARK 280 BUFFER (14% PEG-6000, 5% SATURATED SODIUM CITRATE, 0.02% SODIUM REMARK 280 AZIDE, 0.1 M CACODYLATE, PH 5.8) AND INCUBATED AT 4 DEGREES REMARK 280 CENTIGRADE., VAPOR DIFFUSION - HANGING DROP, TEMPERATURE 277K, REMARK 280 VAPOR DIFFUSION, HANGING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: F 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X,Y+1/2,Z+1/2 REMARK 290 6555 -X,-Y+1/2,Z+1/2 REMARK 290 7555 -X,Y+1/2,-Z+1/2 REMARK 290 8555 X,-Y+1/2,-Z+1/2 REMARK 290 9555 X+1/2,Y,Z+1/2 REMARK 290 10555 -X+1/2,-Y,Z+1/2 REMARK 290 11555 -X+1/2,Y,-Z+1/2 REMARK 290 12555 X+1/2,-Y,-Z+1/2 REMARK 290 13555 X+1/2,Y+1/2,Z REMARK 290 14555 -X+1/2,-Y+1/2,Z REMARK 290 15555 -X+1/2,Y+1/2,-Z REMARK 290 16555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 72.78000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 38.37500 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 72.78000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 38.37500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 72.78000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 38.37500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 72.78000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 38.37500 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 55.52000 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 38.37500 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 55.52000 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 38.37500 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 55.52000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 38.37500 REMARK 290 SMTRY1 12 1.000000 0.000000 0.000000 55.52000 REMARK 290 SMTRY2 12 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 38.37500 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 55.52000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 72.78000 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 14 -1.000000 0.000000 0.000000 55.52000 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 72.78000 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 15 -1.000000 0.000000 0.000000 55.52000 REMARK 290 SMTRY2 15 0.000000 1.000000 0.000000 72.78000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 1.000000 0.000000 0.000000 55.52000 REMARK 290 SMTRY2 16 0.000000 -1.000000 0.000000 72.78000 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 145.56000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 153.50000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 376 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 TYR A 1 REMARK 465 PRO A 2 REMARK 465 LEU A 3 REMARK 465 ASP A 4 REMARK 465 GLY A 5 REMARK 465 ALA A 6 REMARK 465 ALA A 7 REMARK 465 ARG A 8 REMARK 465 GLY A 9 REMARK 465 GLU A 10 REMARK 465 ASP A 11 REMARK 465 THR A 12 REMARK 465 SER A 13 REMARK 465 MET A 14 REMARK 465 ASN A 15 REMARK 465 VAL A 31 REMARK 465 LYS A 32 REMARK 465 GLN A 33 REMARK 465 PHE A 34 REMARK 465 VAL A 35 REMARK 465 ARG A 36 REMARK 465 ARG A 37 REMARK 465 LYS A 38 REMARK 465 ASP A 39 REMARK 465 ASP A 251 REMARK 465 SER A 252 REMARK 465 PRO A 253 REMARK 465 GLU A 254 REMARK 465 THR A 255 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 26 51.72 20.57 REMARK 500 LYS A 28 112.82 -37.70 REMARK 500 THR A 59 -64.92 -100.08 REMARK 500 VAL A 80 62.14 -106.96 REMARK 500 ARG A 149 -136.89 50.33 REMARK 500 ASN A 162 -119.36 53.11 REMARK 500 ASP A 189 -157.81 -108.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 257 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 75 SG REMARK 620 2 HIS A 201 NE2 114.0 REMARK 620 3 HIS A 205 NE2 115.8 104.0 REMARK 620 4 HIS A 211 NE2 111.6 105.0 105.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 260 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 141 O REMARK 620 2 GLY A 173 O 168.4 REMARK 620 3 ASN A 175 O 99.5 91.4 REMARK 620 4 ASP A 177 OD1 86.0 97.7 91.9 REMARK 620 5 HOH A 306 O 83.2 92.6 91.2 169.1 REMARK 620 6 HOH A 312 O 98.4 70.7 162.0 90.5 89.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 258 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 151 NE2 REMARK 620 2 ASP A 153 OD2 101.0 REMARK 620 3 HIS A 166 NE2 121.4 116.2 REMARK 620 4 HIS A 179 ND1 110.4 104.0 102.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 259 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 158 OD1 REMARK 620 2 GLY A 159 O 89.7 REMARK 620 3 GLY A 161 O 92.1 94.3 REMARK 620 4 VAL A 163 O 88.1 174.0 91.4 REMARK 620 5 ASP A 181 OD2 90.9 83.4 176.1 91.0 REMARK 620 6 GLU A 184 OE2 177.4 90.3 85.3 92.1 91.7 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: ZN1 REMARK 800 EVIDENCE_CODE: UNKNOWN REMARK 800 SITE_DESCRIPTION: ZN1 ARE THE LIGANDS OF THE CATALYTIC (ZN 257) REMARK 800 ZINC ION. REMARK 800 REMARK 800 SITE_IDENTIFIER: ZN2 REMARK 800 EVIDENCE_CODE: UNKNOWN REMARK 800 SITE_DESCRIPTION: ZN2 ARE THE LIGANDS OF THE STRUCTURAL (ZN 258) REMARK 800 ZINC ION. REMARK 800 REMARK 800 SITE_IDENTIFIER: CA1 REMARK 800 EVIDENCE_CODE: UNKNOWN REMARK 800 SITE_DESCRIPTION: CA1 ARE THE LIGANDS OF THE CALCIUM ION CA 259 REMARK 800 REMARK 800 SITE_IDENTIFIER: CA2 REMARK 800 EVIDENCE_CODE: UNKNOWN REMARK 800 SITE_DESCRIPTION: CA2 ARE THE LIGANDS OF THE CALCIUM ION CA 260 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 257 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 258 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 259 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 260 DBREF 1SLM A 1 255 UNP P08254 MMP3_HUMAN 18 272 SEQRES 1 A 255 TYR PRO LEU ASP GLY ALA ALA ARG GLY GLU ASP THR SER SEQRES 2 A 255 MET ASN LEU VAL GLN LYS TYR LEU GLU ASN TYR TYR ASP SEQRES 3 A 255 LEU LYS LYS ASP VAL LYS GLN PHE VAL ARG ARG LYS ASP SEQRES 4 A 255 SER GLY PRO VAL VAL LYS LYS ILE ARG GLU MET GLN LYS SEQRES 5 A 255 PHE LEU GLY LEU GLU VAL THR GLY LYS LEU ASP SER ASP SEQRES 6 A 255 THR LEU GLU VAL MET ARG LYS PRO ARG CYS GLY VAL PRO SEQRES 7 A 255 ASP VAL GLY HIS PHE ARG THR PHE PRO GLY ILE PRO LYS SEQRES 8 A 255 TRP ARG LYS THR HIS LEU THR TYR ARG ILE VAL ASN TYR SEQRES 9 A 255 THR PRO ASP LEU PRO LYS ASP ALA VAL ASP SER ALA VAL SEQRES 10 A 255 GLU LYS ALA LEU LYS VAL TRP GLU GLU VAL THR PRO LEU SEQRES 11 A 255 THR PHE SER ARG LEU TYR GLU GLY GLU ALA ASP ILE MET SEQRES 12 A 255 ILE SER PHE ALA VAL ARG GLU HIS GLY ASP PHE TYR PRO SEQRES 13 A 255 PHE ASP GLY PRO GLY ASN VAL LEU ALA HIS ALA TYR ALA SEQRES 14 A 255 PRO GLY PRO GLY ILE ASN GLY ASP ALA HIS PHE ASP ASP SEQRES 15 A 255 ASP GLU GLN TRP THR LYS ASP THR THR GLY THR ASN LEU SEQRES 16 A 255 PHE LEU VAL ALA ALA HIS GLU ILE GLY HIS SER LEU GLY SEQRES 17 A 255 LEU PHE HIS SER ALA ASN THR GLU ALA LEU MET TYR PRO SEQRES 18 A 255 LEU TYR HIS SER LEU THR ASP LEU THR ARG PHE ARG LEU SEQRES 19 A 255 SER GLN ASP ASP ILE ASN GLY ILE GLN SER LEU TYR GLY SEQRES 20 A 255 PRO PRO PRO ASP SER PRO GLU THR HET ZN A 257 1 HET ZN A 258 1 HET CA A 259 1 HET CA A 260 1 HETNAM ZN ZINC ION HETNAM CA CALCIUM ION FORMUL 2 ZN 2(ZN 2+) FORMUL 4 CA 2(CA 2+) FORMUL 6 HOH *119(H2 O) HELIX 1 HA VAL A 17 TYR A 24 1 8 HELIX 2 HB GLY A 41 PHE A 53 1 13 HELIX 3 HC SER A 64 VAL A 69 1 6 HELIX 4 HD LYS A 110 GLU A 125 1 16 HELIX 5 HE LEU A 195 SER A 206 1 12 HELIX 6 HF GLN A 236 TYR A 246 1 11 SHEET 1 S1 5 THR A 131 ARG A 134 0 SHEET 2 S1 5 HIS A 96 ILE A 101 1 O LEU A 97 N SER A 133 SHEET 3 S1 5 ILE A 142 ALA A 147 1 O ILE A 142 N ARG A 100 SHEET 4 S1 5 ALA A 178 ASP A 181 1 O ALA A 178 N SER A 145 SHEET 5 S1 5 ALA A 165 ALA A 167 -1 O HIS A 166 N HIS A 179 LINK SG CYS A 75 ZN ZN A 257 1555 1555 2.18 LINK O ASP A 141 CA CA A 260 1555 1555 2.45 LINK NE2 HIS A 151 ZN ZN A 258 1555 1555 1.80 LINK OD2 ASP A 153 ZN ZN A 258 1555 1555 1.92 LINK OD1 ASP A 158 CA CA A 259 1555 1555 2.50 LINK O GLY A 159 CA CA A 259 1555 1555 2.30 LINK O GLY A 161 CA CA A 259 1555 1555 2.43 LINK O VAL A 163 CA CA A 259 1555 1555 2.31 LINK NE2 HIS A 166 ZN ZN A 258 1555 1555 1.83 LINK O GLY A 173 CA CA A 260 1555 1555 2.31 LINK O ASN A 175 CA CA A 260 1555 1555 2.37 LINK OD1 ASP A 177 CA CA A 260 1555 1555 2.86 LINK ND1 HIS A 179 ZN ZN A 258 1555 1555 1.92 LINK OD2 ASP A 181 CA CA A 259 1555 1555 2.41 LINK OE2 GLU A 184 CA CA A 259 1555 1555 2.38 LINK NE2 HIS A 201 ZN ZN A 257 1555 1555 1.80 LINK NE2 HIS A 205 ZN ZN A 257 1555 1555 1.93 LINK NE2 HIS A 211 ZN ZN A 257 1555 1555 1.87 LINK CA CA A 260 O HOH A 306 1555 1555 2.42 LINK CA CA A 260 O HOH A 312 1555 1555 2.52 SITE 1 ZN1 4 CYS A 75 HIS A 201 HIS A 205 HIS A 211 SITE 1 ZN2 4 HIS A 151 ASP A 153 HIS A 166 HIS A 179 SITE 1 CA1 6 ASP A 158 GLY A 159 GLY A 161 VAL A 163 SITE 2 CA1 6 ASP A 181 GLU A 184 SITE 1 CA2 6 ASP A 141 GLY A 173 ASN A 175 ASP A 177 SITE 2 CA2 6 HOH A 306 HOH A 312 SITE 1 AC1 4 CYS A 75 HIS A 201 HIS A 205 HIS A 211 SITE 1 AC2 5 HIS A 151 ASP A 153 HIS A 166 TYR A 168 SITE 2 AC2 5 HIS A 179 SITE 1 AC3 6 ASP A 158 GLY A 159 GLY A 161 VAL A 163 SITE 2 AC3 6 ASP A 181 GLU A 184 SITE 1 AC4 6 ASP A 141 GLY A 173 ASN A 175 ASP A 177 SITE 2 AC4 6 HOH A 306 HOH A 312 CRYST1 111.040 145.560 76.750 90.00 90.00 90.00 F 2 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009006 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006870 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013029 0.00000