HEADER PLANT PROTEIN 08-MAR-04 1SM7 TITLE SOLUTION STRUCTURE OF THE RECOMBINANT PRONAPIN PRECURSOR, BNIB. COMPND MOL_ID: 1; COMPND 2 MOLECULE: RECOMBINANT IB PRONAPIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BRASSICA NAPUS; SOURCE 3 ORGANISM_COMMON: RAPE; SOURCE 4 ORGANISM_TAXID: 3708; SOURCE 5 EXPRESSION_SYSTEM: PICHIA PASTORIS; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 4922; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: GS115 HIS4; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PPIC9 KEYWDS ALL ALPHA-HELIX, RIGHT-HANDED SUPERHELIX, PLANT PROTEIN EXPDTA SOLUTION NMR NUMMDL 19 AUTHOR D.PANTOJA-UCEDA,O.PALOMARES,M.BRUIX,M.VILLALBA,R.RODRIGUEZ,M.RICO, AUTHOR 2 J.SANTORO REVDAT 4 01-MAY-13 1SM7 1 MODEL VERSN REVDAT 3 24-FEB-09 1SM7 1 VERSN REVDAT 2 08-FEB-05 1SM7 1 JRNL TITLE AUTHOR REVDAT 1 01-FEB-05 1SM7 0 JRNL AUTH D.PANTOJA-UCEDA,O.PALOMARES,M.BRUIX,M.VILLALBA,R.RODRIGUEZ, JRNL AUTH 2 M.RICO,J.SANTORO JRNL TITL SOLUTION STRUCTURE AND STABILITY AGAINST DIGESTION OF JRNL TITL 2 RPROBNIB, A RECOMBINANT 2S ALBUMIN FROM RAPESEED: JRNL TITL 3 RELATIONSHIP TO ITS ALLERGENIC PROPERTIES. JRNL REF BIOCHEMISTRY V. 43 16036 2004 JRNL REFN ISSN 0006-2960 JRNL PMID 15609998 JRNL DOI 10.1021/BI048069X REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : DIANA 1.5 REMARK 3 AUTHORS : PETER GUNTERT REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1SM7 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-MAR-04. REMARK 100 THE RCSB ID CODE IS RCSB021823. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 308; 308 REMARK 210 PH : 3.0; 3.0 REMARK 210 IONIC STRENGTH : NULL; NULL REMARK 210 PRESSURE : AMBIENT; AMBIENT REMARK 210 SAMPLE CONTENTS : 1.2MM RPROBNIB; 10MM PHOSPHATE REMARK 210 BUFFER; 95% H2O, 5% D2O; 1.2MM REMARK 210 RPROBNIB; 10MM PHOSPHATE BUFFER; REMARK 210 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D TOCSY; 2D NOESY; 2D COSY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : DMX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : DIANA 1.5, XWINNMR, NMRVIEW 5.0.4 REMARK 210 METHOD USED : SIMULATED ANNEALING, TORSION REMARK 210 ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 19 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HD22 LEU A 52 HD11 LEU A 64 1.20 REMARK 500 HZ1 LYS A 69 HG13 VAL A 73 1.29 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 2 CYS A 48 CA - CB - SG ANGL. DEV. = 7.9 DEGREES REMARK 500 3 CYS A 48 CA - CB - SG ANGL. DEV. = 7.4 DEGREES REMARK 500 4 CYS A 49 CA - CB - SG ANGL. DEV. = 8.5 DEGREES REMARK 500 6 CYS A 48 CA - CB - SG ANGL. DEV. = 6.9 DEGREES REMARK 500 8 ARG A 23 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 8 ARG A 23 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 8 CYS A 48 CA - CB - SG ANGL. DEV. = 8.6 DEGREES REMARK 500 8 CYS A 104 CA - CB - SG ANGL. DEV. = 7.8 DEGREES REMARK 500 10 CYS A 48 CA - CB - SG ANGL. DEV. = 9.9 DEGREES REMARK 500 15 CYS A 48 CA - CB - SG ANGL. DEV. = 7.9 DEGREES REMARK 500 15 CYS A 61 CA - CB - SG ANGL. DEV. = 8.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLU A 12 33.11 -179.83 REMARK 500 1 GLN A 13 50.53 -155.12 REMARK 500 1 HIS A 14 -148.18 -64.91 REMARK 500 1 ARG A 16 -71.63 -152.30 REMARK 500 1 GLN A 20 -40.26 -132.20 REMARK 500 1 LEU A 26 -167.82 -112.37 REMARK 500 1 SER A 32 -81.18 -133.95 REMARK 500 1 LEU A 44 -41.98 -130.06 REMARK 500 1 ASP A 56 -170.04 77.51 REMARK 500 1 CYS A 61 166.32 173.75 REMARK 500 1 LYS A 65 -34.61 -39.84 REMARK 500 1 GLN A 66 -71.21 -61.62 REMARK 500 1 ARG A 72 -75.53 -154.85 REMARK 500 1 VAL A 73 159.50 -45.89 REMARK 500 1 GLN A 74 33.57 -175.69 REMARK 500 1 GLN A 76 103.73 174.86 REMARK 500 1 PHE A 80 -62.86 -152.80 REMARK 500 1 THR A 83 -72.28 -41.51 REMARK 500 1 ASN A 97 95.11 -23.92 REMARK 500 1 ILE A 101 -89.11 -61.06 REMARK 500 1 ILE A 107 -39.64 171.72 REMARK 500 2 PRO A 2 -159.49 -69.71 REMARK 500 2 GLU A 12 25.17 -171.12 REMARK 500 2 GLN A 13 52.75 -151.84 REMARK 500 2 HIS A 14 -153.37 -71.28 REMARK 500 2 ARG A 16 -75.50 -145.53 REMARK 500 2 ALA A 17 -16.79 -46.99 REMARK 500 2 GLN A 19 34.64 -90.55 REMARK 500 2 GLN A 20 -38.11 -140.70 REMARK 500 2 SER A 32 -34.01 166.84 REMARK 500 2 GLU A 33 19.83 -153.19 REMARK 500 2 GLN A 35 109.04 -174.70 REMARK 500 2 ASP A 56 -170.88 77.68 REMARK 500 2 CYS A 61 153.66 176.22 REMARK 500 2 PRO A 62 10.34 -65.29 REMARK 500 2 VAL A 73 102.99 -48.84 REMARK 500 2 HIS A 77 -133.96 -117.19 REMARK 500 2 PHE A 80 -35.73 176.75 REMARK 500 2 SER A 82 -35.95 -38.41 REMARK 500 2 THR A 83 -72.83 -49.16 REMARK 500 2 ASN A 97 96.32 -28.25 REMARK 500 2 LYS A 99 86.44 -151.74 REMARK 500 2 CYS A 104 63.55 -118.37 REMARK 500 2 ILE A 107 -38.55 170.64 REMARK 500 3 PRO A 2 -175.64 -68.86 REMARK 500 3 GLN A 3 -40.96 -132.22 REMARK 500 3 GLU A 12 32.87 172.11 REMARK 500 3 GLN A 13 55.98 -157.43 REMARK 500 3 HIS A 14 -150.93 -69.58 REMARK 500 3 ARG A 16 -76.62 -150.94 REMARK 500 REMARK 500 THIS ENTRY HAS 461 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1PNB RELATED DB: PDB DBREF 1SM7 A 1 109 UNP Q8GT96 Q8GT96_BRANA 1 109 SEQRES 1 A 109 GLN PRO GLN LYS CYS GLN ARG GLU PHE GLN GLN GLU GLN SEQRES 2 A 109 HIS LEU ARG ALA CYS GLN GLN TRP ILE ARG GLN GLN LEU SEQRES 3 A 109 ALA GLY SER PRO PHE SER GLU ASN GLN TRP GLY PRO GLN SEQRES 4 A 109 GLN GLY PRO SER LEU ARG GLU GLN CYS CYS ASN GLU LEU SEQRES 5 A 109 TYR GLN GLU ASP GLN VAL CYS VAL CYS PRO THR LEU LYS SEQRES 6 A 109 GLN ALA ALA LYS SER VAL ARG VAL GLN GLY GLN HIS GLY SEQRES 7 A 109 PRO PHE GLN SER THR ARG ILE TYR GLN ILE ALA LYS ASN SEQRES 8 A 109 LEU PRO ASN VAL CYS ASN MET LYS GLN ILE GLY THR CYS SEQRES 9 A 109 PRO PHE ILE ALA ILE HELIX 1 1 PRO A 2 ARG A 7 1 6 HELIX 2 2 GLU A 8 GLN A 13 1 6 HELIX 3 3 ALA A 17 ILE A 22 1 6 HELIX 4 4 ARG A 23 LEU A 26 5 4 HELIX 5 5 LEU A 44 LEU A 52 1 9 HELIX 6 6 ASP A 56 CYS A 61 1 6 HELIX 7 7 LEU A 64 SER A 70 1 7 HELIX 8 8 PHE A 80 ILE A 88 1 9 HELIX 9 9 ASN A 91 CYS A 96 1 6 SSBOND 1 CYS A 5 CYS A 59 1555 1555 2.03 SSBOND 2 CYS A 18 CYS A 48 1555 1555 2.04 SSBOND 3 CYS A 49 CYS A 96 1555 1555 2.00 SSBOND 4 CYS A 61 CYS A 104 1555 1555 1.98 CISPEP 1 CYS A 61 PRO A 62 1 -5.47 CISPEP 2 CYS A 61 PRO A 62 2 -16.39 CISPEP 3 CYS A 61 PRO A 62 3 -13.53 CISPEP 4 CYS A 61 PRO A 62 4 -17.02 CISPEP 5 CYS A 61 PRO A 62 5 -6.92 CISPEP 6 CYS A 61 PRO A 62 6 -10.60 CISPEP 7 CYS A 61 PRO A 62 7 -7.38 CISPEP 8 CYS A 61 PRO A 62 8 -10.83 CISPEP 9 CYS A 61 PRO A 62 9 -4.31 CISPEP 10 CYS A 61 PRO A 62 10 -16.29 CISPEP 11 CYS A 61 PRO A 62 11 -18.05 CISPEP 12 CYS A 61 PRO A 62 12 -17.05 CISPEP 13 CYS A 61 PRO A 62 13 -5.22 CISPEP 14 CYS A 61 PRO A 62 14 -11.93 CISPEP 15 CYS A 61 PRO A 62 15 -14.33 CISPEP 16 CYS A 61 PRO A 62 16 -21.81 CISPEP 17 CYS A 61 PRO A 62 17 -9.96 CISPEP 18 CYS A 61 PRO A 62 18 -5.79 CISPEP 19 CYS A 61 PRO A 62 19 -4.81 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1