data_1SNE # _entry.id 1SNE # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.392 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1SNE pdb_00001sne 10.2210/pdb1sne/pdb RCSB RCSB021849 ? ? WWPDB D_1000021849 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2004-08-17 2 'Structure model' 1 1 2008-04-29 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 2 0 2023-11-15 5 'Structure model' 3 0 2024-05-08 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Atomic model' 4 4 'Structure model' 'Data collection' 5 4 'Structure model' 'Database references' 6 4 'Structure model' 'Derived calculations' 7 5 'Structure model' 'Atomic model' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' atom_site 2 4 'Structure model' chem_comp_atom 3 4 'Structure model' chem_comp_bond 4 4 'Structure model' database_2 5 4 'Structure model' struct_conn 6 4 'Structure model' struct_site 7 5 'Structure model' atom_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_atom_site.auth_atom_id' 2 4 'Structure model' '_atom_site.label_atom_id' 3 4 'Structure model' '_database_2.pdbx_DOI' 4 4 'Structure model' '_database_2.pdbx_database_accession' 5 4 'Structure model' '_struct_conn.pdbx_dist_value' 6 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 7 4 'Structure model' '_struct_conn.pdbx_ptnr1_label_alt_id' 8 4 'Structure model' '_struct_conn.pdbx_ptnr2_label_alt_id' 9 4 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 10 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 11 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 12 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 13 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 14 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 15 4 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 16 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 17 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 18 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 19 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 20 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' 21 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 22 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 23 4 'Structure model' '_struct_site.pdbx_auth_seq_id' 24 5 'Structure model' '_atom_site.auth_atom_id' 25 5 'Structure model' '_atom_site.label_atom_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1SNE _pdbx_database_status.recvd_initial_deposition_date 2004-03-10 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1SN9 . unspecified PDB 1SNA . unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Ali, M.H.' 1 'Peisach, E.' 2 'Allen, K.N.' 3 'Imperiali, B.' 4 # _citation.id primary _citation.title 'X-ray structure analysis of a designed oligomeric miniprotein reveals a discrete quaternary architecture.' _citation.journal_abbrev Proc.Natl.Acad.Sci.Usa _citation.journal_volume 101 _citation.page_first 12183 _citation.page_last 12188 _citation.year 2004 _citation.journal_id_ASTM PNASA6 _citation.country US _citation.journal_id_ISSN 0027-8424 _citation.journal_id_CSD 0040 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 15302930 _citation.pdbx_database_id_DOI 10.1073/pnas.0401245101 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Ali, M.H.' 1 ? primary 'Peisach, E.' 2 ? primary 'Allen, K.N.' 3 ? primary 'Imperiali, B.' 4 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'tetrameric beta-beta-alpha mini-protein' 2609.838 2 ? ? ? ? 2 non-polymer syn 'ISOPROPYL ALCOHOL' 60.095 1 ? ? ? ? 3 water nat water 18.015 69 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name BBAT # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(ACE)YRI(DPR)SYDF(DAL)DELAKLLR(MSO)A(DBZ)G(NH2)' _entity_poly.pdbx_seq_one_letter_code_can XYRIPSYDFADELAKLLRMAAGX _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'ISOPROPYL ALCOHOL' IPA 3 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ACE n 1 2 TYR n 1 3 ARG n 1 4 ILE n 1 5 DPR n 1 6 SER n 1 7 TYR n 1 8 ASP n 1 9 PHE n 1 10 DAL n 1 11 ASP n 1 12 GLU n 1 13 LEU n 1 14 ALA n 1 15 LYS n 1 16 LEU n 1 17 LEU n 1 18 ARG n 1 19 MSO n 1 20 ALA n 1 21 DBZ n 1 22 GLY n 1 23 NH2 n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'The protein was chemically synthesized.' # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ACE non-polymer . 'ACETYL GROUP' ? 'C2 H4 O' 44.053 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 DAL 'D-peptide linking' . D-ALANINE ? 'C3 H7 N O2' 89.093 DBZ 'L-peptide linking' n '3-(BENZOYLAMINO)-L-ALANINE' ? 'C10 H12 N2 O3' 208.214 DPR 'D-peptide linking' . D-PROLINE ? 'C5 H9 N O2' 115.130 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 IPA non-polymer . 'ISOPROPYL ALCOHOL' 2-PROPANOL 'C3 H8 O' 60.095 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSO 'L-peptide linking' n 'SELENOMETHIONINE SELENOXIDE' ? 'C5 H11 N O3 Se' 212.106 NH2 non-polymer . 'AMINO GROUP' ? 'H2 N' 16.023 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ACE 1 100 100 ACE ACE A . n A 1 2 TYR 2 101 101 TYR TYR A . n A 1 3 ARG 3 102 102 ARG ARG A . n A 1 4 ILE 4 103 103 ILE ILE A . n A 1 5 DPR 5 104 104 DPR DPR A . n A 1 6 SER 6 105 105 SER SER A . n A 1 7 TYR 7 106 106 TYR TYR A . n A 1 8 ASP 8 107 107 ASP ASP A . n A 1 9 PHE 9 108 108 PHE PHE A . n A 1 10 DAL 10 109 109 DAL DAL A . n A 1 11 ASP 11 110 110 ASP ASP A . n A 1 12 GLU 12 111 111 GLU GLU A . n A 1 13 LEU 13 112 112 LEU LEU A . n A 1 14 ALA 14 113 113 ALA ALA A . n A 1 15 LYS 15 114 114 LYS LYS A . n A 1 16 LEU 16 115 115 LEU LEU A . n A 1 17 LEU 17 116 116 LEU LEU A . n A 1 18 ARG 18 117 117 ARG ARG A . n A 1 19 MSO 19 118 118 MSO MSO A . n A 1 20 ALA 20 119 119 ALA ALA A . n A 1 21 DBZ 21 120 120 DBZ DBZ A . n A 1 22 GLY 22 121 121 GLY GLY A . n A 1 23 NH2 23 122 122 NH2 NH2 A . n B 1 1 ACE 1 200 200 ACE ACE B . n B 1 2 TYR 2 201 201 TYR TYR B . n B 1 3 ARG 3 202 202 ARG ARG B . n B 1 4 ILE 4 203 203 ILE ILE B . n B 1 5 DPR 5 204 204 DPR DPR B . n B 1 6 SER 6 205 205 SER SER B . n B 1 7 TYR 7 206 206 TYR TYR B . n B 1 8 ASP 8 207 207 ASP ASP B . n B 1 9 PHE 9 208 208 PHE PHE B . n B 1 10 DAL 10 209 209 DAL DAL B . n B 1 11 ASP 11 210 210 ASP ASP B . n B 1 12 GLU 12 211 211 GLU GLU B . n B 1 13 LEU 13 212 212 LEU LEU B . n B 1 14 ALA 14 213 213 ALA ALA B . n B 1 15 LYS 15 214 214 LYS LYS B . n B 1 16 LEU 16 215 215 LEU LEU B . n B 1 17 LEU 17 216 216 LEU LEU B . n B 1 18 ARG 18 217 217 ARG ARG B . n B 1 19 MSO 19 218 218 MSO MSO B . n B 1 20 ALA 20 219 219 ALA ALA B . n B 1 21 DBZ 21 220 220 DBZ DBZ B . n B 1 22 GLY 22 221 221 GLY GLY B . n B 1 23 NH2 23 222 222 NH2 NH2 B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 IPA 1 123 1 IPA IPA A . D 3 HOH 1 2 2 HOH HOH A . D 3 HOH 2 3 3 HOH HOH A . D 3 HOH 3 7 7 HOH HOH A . D 3 HOH 4 8 8 HOH HOH A . D 3 HOH 5 10 10 HOH HOH A . D 3 HOH 6 11 11 HOH HOH A . D 3 HOH 7 13 13 HOH HOH A . D 3 HOH 8 14 14 HOH HOH A . D 3 HOH 9 15 15 HOH HOH A . D 3 HOH 10 16 16 HOH HOH A . D 3 HOH 11 19 19 HOH HOH A . D 3 HOH 12 22 22 HOH HOH A . D 3 HOH 13 23 23 HOH HOH A . D 3 HOH 14 25 25 HOH HOH A . D 3 HOH 15 27 27 HOH HOH A . D 3 HOH 16 32 32 HOH HOH A . D 3 HOH 17 33 33 HOH HOH A . D 3 HOH 18 38 38 HOH HOH A . D 3 HOH 19 39 39 HOH HOH A . D 3 HOH 20 41 41 HOH HOH A . D 3 HOH 21 44 44 HOH HOH A . D 3 HOH 22 50 50 HOH HOH A . D 3 HOH 23 51 51 HOH HOH A . D 3 HOH 24 52 52 HOH HOH A . D 3 HOH 25 53 53 HOH HOH A . D 3 HOH 26 54 54 HOH HOH A . D 3 HOH 27 57 57 HOH HOH A . D 3 HOH 28 64 64 HOH HOH A . D 3 HOH 29 82 82 HOH HOH A . D 3 HOH 30 85 85 HOH HOH A . D 3 HOH 31 87 87 HOH HOH A . D 3 HOH 32 88 88 HOH HOH A . D 3 HOH 33 89 89 HOH HOH A . D 3 HOH 34 91 91 HOH HOH A . E 3 HOH 1 1 1 HOH HOH B . E 3 HOH 2 4 4 HOH HOH B . E 3 HOH 3 5 5 HOH HOH B . E 3 HOH 4 6 6 HOH HOH B . E 3 HOH 5 9 9 HOH HOH B . E 3 HOH 6 12 12 HOH HOH B . E 3 HOH 7 17 17 HOH HOH B . E 3 HOH 8 18 18 HOH HOH B . E 3 HOH 9 20 20 HOH HOH B . E 3 HOH 10 21 21 HOH HOH B . E 3 HOH 11 26 26 HOH HOH B . E 3 HOH 12 28 28 HOH HOH B . E 3 HOH 13 29 29 HOH HOH B . E 3 HOH 14 30 30 HOH HOH B . E 3 HOH 15 31 31 HOH HOH B . E 3 HOH 16 34 34 HOH HOH B . E 3 HOH 17 36 36 HOH HOH B . E 3 HOH 18 37 37 HOH HOH B . E 3 HOH 19 40 40 HOH HOH B . E 3 HOH 20 42 42 HOH HOH B . E 3 HOH 21 43 43 HOH HOH B . E 3 HOH 22 45 45 HOH HOH B . E 3 HOH 23 47 47 HOH HOH B . E 3 HOH 24 49 49 HOH HOH B . E 3 HOH 25 55 55 HOH HOH B . E 3 HOH 26 56 56 HOH HOH B . E 3 HOH 27 58 58 HOH HOH B . E 3 HOH 28 60 60 HOH HOH B . E 3 HOH 29 61 61 HOH HOH B . E 3 HOH 30 63 63 HOH HOH B . E 3 HOH 31 80 80 HOH HOH B . E 3 HOH 32 84 84 HOH HOH B . E 3 HOH 33 86 86 HOH HOH B . E 3 HOH 34 90 90 HOH HOH B . E 3 HOH 35 92 92 HOH HOH B . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CNS refinement 1.1 ? 1 DENZO 'data reduction' . ? 2 SCALEPACK 'data scaling' . ? 3 SOLVE phasing . ? 4 # _cell.entry_id 1SNE _cell.length_a 57.912 _cell.length_b 21.325 _cell.length_c 31.896 _cell.angle_alpha 90.00 _cell.angle_beta 121.32 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1SNE _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? # _exptl.entry_id 1SNE _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 23.68 _exptl_crystal.description ? _exptl_crystal.density_Matthews 1.61 _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pdbx_details '100 mM HEPES-Na, 10% v/v i-propanol, 20% w/v PEG 4000, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 4' _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.978031 1.0 2 0.97902 1.0 3 0.949320 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'NSLS BEAMLINE X12C' _diffrn_source.pdbx_synchrotron_site NSLS _diffrn_source.pdbx_synchrotron_beamline X12C _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list '0.978031, 0.97902, 0.949320' # _reflns.entry_id 1SNE _reflns.observed_criterion_sigma_I 0.0 _reflns.observed_criterion_sigma_F 0.0 _reflns.d_resolution_low 99.0 _reflns.d_resolution_high 1.50 _reflns.number_obs 7811 _reflns.number_all 7811 _reflns.percent_possible_obs 74.4 _reflns.pdbx_Rmerge_I_obs 0.035 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 33.6 _reflns.B_iso_Wilson_estimate 11.5 _reflns.pdbx_redundancy 1.7 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.50 _reflns_shell.d_res_low 1.55 _reflns_shell.percent_possible_all 16.1 _reflns_shell.Rmerge_I_obs 0.085 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 7.1 _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 169 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 1SNE _refine.ls_number_reflns_obs 7769 _refine.ls_number_reflns_all 7769 _refine.pdbx_ls_sigma_I 0.0 _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF 1233606.43 _refine.pdbx_data_cutoff_low_absF 0.000000 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 27.25 _refine.ls_d_res_high 1.50 _refine.ls_percent_reflns_obs 74.3 _refine.ls_R_factor_obs 0.169 _refine.ls_R_factor_all 0.169 _refine.ls_R_factor_R_work 0.169 _refine.ls_R_factor_R_free 0.183 _refine.ls_R_factor_R_free_error 0.007 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 10.1 _refine.ls_number_reflns_R_free 786 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 15.7 _refine.aniso_B[1][1] -0.81 _refine.aniso_B[2][2] 2.18 _refine.aniso_B[3][3] -1.36 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] -0.16 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.327503 _refine.solvent_model_param_bsol 58.1948 _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'BULK SOLVENT MODEL USED' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 1SNE _refine_analyze.Luzzati_coordinate_error_obs 0.15 _refine_analyze.Luzzati_sigma_a_obs 0.11 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.18 _refine_analyze.Luzzati_sigma_a_free 0.13 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 393 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 73 _refine_hist.number_atoms_total 466 _refine_hist.d_res_high 1.50 _refine_hist.d_res_low 27.25 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.007 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.8 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 21.6 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 0.96 ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 1.50 _refine_ls_shell.d_res_low 1.59 _refine_ls_shell.number_reflns_R_work 351 _refine_ls_shell.R_factor_R_work 0.208 _refine_ls_shell.percent_reflns_obs 21.4 _refine_ls_shell.R_factor_R_free 0.236 _refine_ls_shell.R_factor_R_free_error 0.044 _refine_ls_shell.percent_reflns_R_free 7.6 _refine_ls_shell.number_reflns_R_free 29 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.R_factor_all ? # _database_PDB_matrix.entry_id 1SNE _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1SNE _struct.title 'An Oligomeric Domain-Swapped Beta-Beta-Alpha Mini-Protein' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1SNE _struct_keywords.pdbx_keywords 'DE NOVO PROTEIN' _struct_keywords.text 'protein design, domain swapping, mini-protein, oligomerization, DE NOVO PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 3 ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 1SNE _struct_ref.pdbx_db_accession 1SNE _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1SNE A 1 ? 23 ? 1SNE 100 ? 122 ? 100 122 2 1 1SNE B 1 ? 23 ? 1SNE 200 ? 222 ? 200 222 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_554 -x,y,-z-1 -1.0000000000 0.0000000000 0.0000000000 16.5800939602 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 -27.2480329615 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 PHE A 9 ? GLY A 22 ? PHE A 108 GLY A 121 1 ? 14 HELX_P HELX_P2 2 PHE B 9 ? GLY B 22 ? PHE B 208 GLY B 221 1 ? 14 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A ACE 1 C ? ? ? 1_555 A TYR 2 N ? ? A ACE 100 A TYR 101 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale2 covale both ? A ILE 4 C ? ? ? 1_555 A DPR 5 N ? ? A ILE 103 A DPR 104 1_555 ? ? ? ? ? ? ? 1.340 ? ? covale3 covale both ? A DPR 5 C ? ? ? 1_555 A SER 6 N ? ? A DPR 104 A SER 105 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale4 covale both ? A PHE 9 C ? ? ? 1_555 A DAL 10 N ? ? A PHE 108 A DAL 109 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale5 covale both ? A DAL 10 C ? ? ? 1_555 A ASP 11 N ? ? A DAL 109 A ASP 110 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale6 covale both ? A ARG 18 C ? ? ? 1_555 A MSO 19 N A ? A ARG 117 A MSO 118 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale7 covale both ? A ARG 18 C ? ? ? 1_555 A MSO 19 N B ? A ARG 117 A MSO 118 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale8 covale both ? A MSO 19 C A ? ? 1_555 A ALA 20 N ? ? A MSO 118 A ALA 119 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale9 covale both ? A MSO 19 C B ? ? 1_555 A ALA 20 N ? ? A MSO 118 A ALA 119 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale10 covale both ? A ALA 20 C ? ? ? 1_555 A DBZ 21 N ? ? A ALA 119 A DBZ 120 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale11 covale both ? A DBZ 21 C ? ? ? 1_555 A GLY 22 N ? ? A DBZ 120 A GLY 121 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale12 covale both ? A GLY 22 C ? ? ? 1_555 A NH2 23 N ? ? A GLY 121 A NH2 122 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale13 covale both ? B ACE 1 C ? ? ? 1_555 B TYR 2 N ? ? B ACE 200 B TYR 201 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale14 covale both ? B ILE 4 C ? ? ? 1_555 B DPR 5 N ? ? B ILE 203 B DPR 204 1_555 ? ? ? ? ? ? ? 1.338 ? ? covale15 covale both ? B DPR 5 C ? ? ? 1_555 B SER 6 N ? ? B DPR 204 B SER 205 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale16 covale both ? B PHE 9 C ? ? ? 1_555 B DAL 10 N ? ? B PHE 208 B DAL 209 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale17 covale both ? B DAL 10 C ? ? ? 1_555 B ASP 11 N ? ? B DAL 209 B ASP 210 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale18 covale both ? B ARG 18 C ? ? ? 1_555 B MSO 19 N A ? B ARG 217 B MSO 218 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale19 covale both ? B ARG 18 C ? ? ? 1_555 B MSO 19 N B ? B ARG 217 B MSO 218 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale20 covale both ? B MSO 19 C A ? ? 1_555 B ALA 20 N ? ? B MSO 218 B ALA 219 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale21 covale both ? B MSO 19 C B ? ? 1_555 B ALA 20 N ? ? B MSO 218 B ALA 219 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale22 covale both ? B ALA 20 C ? ? ? 1_555 B DBZ 21 N ? ? B ALA 219 B DBZ 220 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale23 covale both ? B DBZ 21 C ? ? ? 1_555 B GLY 22 N ? ? B DBZ 220 B GLY 221 1_555 ? ? ? ? ? ? ? 1.309 ? ? covale24 covale both ? B GLY 22 C ? ? ? 1_555 B NH2 23 N ? ? B GLY 221 B NH2 222 1_555 ? ? ? ? ? ? ? 1.339 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 2 ? B ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel B 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ARG A 3 ? ILE A 4 ? ARG A 102 ILE A 103 A 2 TYR A 7 ? ASP A 8 ? TYR A 106 ASP A 107 B 1 ARG B 3 ? ILE B 4 ? ARG B 202 ILE B 203 B 2 TYR B 7 ? ASP B 8 ? TYR B 206 ASP B 207 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ILE A 4 ? N ILE A 103 O TYR A 7 ? O TYR A 106 B 1 2 N ILE B 4 ? N ILE B 203 O TYR B 7 ? O TYR B 206 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id IPA _struct_site.pdbx_auth_seq_id 123 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 5 _struct_site.details 'BINDING SITE FOR RESIDUE IPA A 123' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 HOH D . ? HOH A 82 . ? 2_554 ? 2 AC1 5 TYR A 2 ? TYR A 101 . ? 1_555 ? 3 AC1 5 LEU A 17 ? LEU A 116 . ? 2_554 ? 4 AC1 5 HOH E . ? HOH B 21 . ? 2_554 ? 5 AC1 5 DAL B 10 ? DAL B 209 . ? 2_554 ? # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 N _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 ILE _pdbx_validate_rmsd_angle.auth_seq_id_1 103 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 CA _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 ILE _pdbx_validate_rmsd_angle.auth_seq_id_2 103 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 C _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 ILE _pdbx_validate_rmsd_angle.auth_seq_id_3 103 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 94.51 _pdbx_validate_rmsd_angle.angle_target_value 111.00 _pdbx_validate_rmsd_angle.angle_deviation -16.49 _pdbx_validate_rmsd_angle.angle_standard_deviation 2.70 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A DPR 5 A DPR 104 ? PRO D-PROLINE 2 A DAL 10 A DAL 109 ? ALA D-ALANINE 3 A MSO 19 A MSO 118 ? MET 'SELENOMETHIONINE SELENOXIDE' 4 A DBZ 21 A DBZ 120 ? ALA '3-(BENZOYLAMINO)-L-ALANINE' 5 B DPR 5 B DPR 204 ? PRO D-PROLINE 6 B DAL 10 B DAL 209 ? ALA D-ALANINE 7 B MSO 19 B MSO 218 ? MET 'SELENOMETHIONINE SELENOXIDE' 8 B DBZ 21 B DBZ 220 ? ALA '3-(BENZOYLAMINO)-L-ALANINE' # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A HOH 87 ? D HOH . 2 1 A HOH 89 ? D HOH . # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ACE C C N N 1 ACE O O N N 2 ACE CH3 C N N 3 ACE H H N N 4 ACE H1 H N N 5 ACE H2 H N N 6 ACE H3 H N N 7 ALA N N N N 8 ALA CA C N S 9 ALA C C N N 10 ALA O O N N 11 ALA CB C N N 12 ALA OXT O N N 13 ALA H H N N 14 ALA H2 H N N 15 ALA HA H N N 16 ALA HB1 H N N 17 ALA HB2 H N N 18 ALA HB3 H N N 19 ALA HXT H N N 20 ARG N N N N 21 ARG CA C N S 22 ARG C C N N 23 ARG O O N N 24 ARG CB C N N 25 ARG CG C N N 26 ARG CD C N N 27 ARG NE N N N 28 ARG CZ C N N 29 ARG NH1 N N N 30 ARG NH2 N N N 31 ARG OXT O N N 32 ARG H H N N 33 ARG H2 H N N 34 ARG HA H N N 35 ARG HB2 H N N 36 ARG HB3 H N N 37 ARG HG2 H N N 38 ARG HG3 H N N 39 ARG HD2 H N N 40 ARG HD3 H N N 41 ARG HE H N N 42 ARG HH11 H N N 43 ARG HH12 H N N 44 ARG HH21 H N N 45 ARG HH22 H N N 46 ARG HXT H N N 47 ASP N N N N 48 ASP CA C N S 49 ASP C C N N 50 ASP O O N N 51 ASP CB C N N 52 ASP CG C N N 53 ASP OD1 O N N 54 ASP OD2 O N N 55 ASP OXT O N N 56 ASP H H N N 57 ASP H2 H N N 58 ASP HA H N N 59 ASP HB2 H N N 60 ASP HB3 H N N 61 ASP HD2 H N N 62 ASP HXT H N N 63 DAL N N N N 64 DAL CA C N R 65 DAL CB C N N 66 DAL C C N N 67 DAL O O N N 68 DAL OXT O N N 69 DAL H H N N 70 DAL H2 H N N 71 DAL HA H N N 72 DAL HB1 H N N 73 DAL HB2 H N N 74 DAL HB3 H N N 75 DAL HXT H N N 76 DBZ N N N N 77 DBZ CA C N S 78 DBZ CB C N N 79 DBZ NG N N N 80 DBZ CD2 C N N 81 DBZ OD2 O N N 82 DBZ C1 C Y N 83 DBZ C2 C Y N 84 DBZ C6 C Y N 85 DBZ C3 C Y N 86 DBZ C5 C Y N 87 DBZ C4 C Y N 88 DBZ C C N N 89 DBZ O O N N 90 DBZ OXT O N N 91 DBZ H H N N 92 DBZ H2 H N N 93 DBZ HA H N N 94 DBZ HB1 H N N 95 DBZ HB2 H N N 96 DBZ HNG H N N 97 DBZ H1 H N N 98 DBZ H6 H N N 99 DBZ H3 H N N 100 DBZ H5 H N N 101 DBZ H4 H N N 102 DBZ HXT H N N 103 DPR N N N N 104 DPR CA C N R 105 DPR CB C N N 106 DPR CG C N N 107 DPR CD C N N 108 DPR C C N N 109 DPR O O N N 110 DPR OXT O N N 111 DPR H H N N 112 DPR HA H N N 113 DPR HB2 H N N 114 DPR HB3 H N N 115 DPR HG2 H N N 116 DPR HG3 H N N 117 DPR HD2 H N N 118 DPR HD3 H N N 119 DPR HXT H N N 120 GLU N N N N 121 GLU CA C N S 122 GLU C C N N 123 GLU O O N N 124 GLU CB C N N 125 GLU CG C N N 126 GLU CD C N N 127 GLU OE1 O N N 128 GLU OE2 O N N 129 GLU OXT O N N 130 GLU H H N N 131 GLU H2 H N N 132 GLU HA H N N 133 GLU HB2 H N N 134 GLU HB3 H N N 135 GLU HG2 H N N 136 GLU HG3 H N N 137 GLU HE2 H N N 138 GLU HXT H N N 139 GLY N N N N 140 GLY CA C N N 141 GLY C C N N 142 GLY O O N N 143 GLY OXT O N N 144 GLY H H N N 145 GLY H2 H N N 146 GLY HA2 H N N 147 GLY HA3 H N N 148 GLY HXT H N N 149 HOH O O N N 150 HOH H1 H N N 151 HOH H2 H N N 152 ILE N N N N 153 ILE CA C N S 154 ILE C C N N 155 ILE O O N N 156 ILE CB C N S 157 ILE CG1 C N N 158 ILE CG2 C N N 159 ILE CD1 C N N 160 ILE OXT O N N 161 ILE H H N N 162 ILE H2 H N N 163 ILE HA H N N 164 ILE HB H N N 165 ILE HG12 H N N 166 ILE HG13 H N N 167 ILE HG21 H N N 168 ILE HG22 H N N 169 ILE HG23 H N N 170 ILE HD11 H N N 171 ILE HD12 H N N 172 ILE HD13 H N N 173 ILE HXT H N N 174 IPA C1 C N N 175 IPA C2 C N N 176 IPA C3 C N N 177 IPA O2 O N N 178 IPA H11 H N N 179 IPA H12 H N N 180 IPA H13 H N N 181 IPA H2 H N N 182 IPA H31 H N N 183 IPA H32 H N N 184 IPA H33 H N N 185 IPA HO2 H N N 186 LEU N N N N 187 LEU CA C N S 188 LEU C C N N 189 LEU O O N N 190 LEU CB C N N 191 LEU CG C N N 192 LEU CD1 C N N 193 LEU CD2 C N N 194 LEU OXT O N N 195 LEU H H N N 196 LEU H2 H N N 197 LEU HA H N N 198 LEU HB2 H N N 199 LEU HB3 H N N 200 LEU HG H N N 201 LEU HD11 H N N 202 LEU HD12 H N N 203 LEU HD13 H N N 204 LEU HD21 H N N 205 LEU HD22 H N N 206 LEU HD23 H N N 207 LEU HXT H N N 208 LYS N N N N 209 LYS CA C N S 210 LYS C C N N 211 LYS O O N N 212 LYS CB C N N 213 LYS CG C N N 214 LYS CD C N N 215 LYS CE C N N 216 LYS NZ N N N 217 LYS OXT O N N 218 LYS H H N N 219 LYS H2 H N N 220 LYS HA H N N 221 LYS HB2 H N N 222 LYS HB3 H N N 223 LYS HG2 H N N 224 LYS HG3 H N N 225 LYS HD2 H N N 226 LYS HD3 H N N 227 LYS HE2 H N N 228 LYS HE3 H N N 229 LYS HZ1 H N N 230 LYS HZ2 H N N 231 LYS HZ3 H N N 232 LYS HXT H N N 233 MSO N N N N 234 MSO CA C N S 235 MSO CB C N N 236 MSO C C N N 237 MSO CG C N N 238 MSO SE SE N N 239 MSO OE O N N 240 MSO CE C N N 241 MSO O O N N 242 MSO OXT O N N 243 MSO H H N N 244 MSO H2 H N N 245 MSO HA H N N 246 MSO HB2 H N N 247 MSO HB3 H N N 248 MSO HG2 H N N 249 MSO HG3 H N N 250 MSO HE1 H N N 251 MSO HE2 H N N 252 MSO HE3 H N N 253 MSO HXT H N N 254 NH2 N N N N 255 NH2 HN1 H N N 256 NH2 HN2 H N N 257 PHE N N N N 258 PHE CA C N S 259 PHE C C N N 260 PHE O O N N 261 PHE CB C N N 262 PHE CG C Y N 263 PHE CD1 C Y N 264 PHE CD2 C Y N 265 PHE CE1 C Y N 266 PHE CE2 C Y N 267 PHE CZ C Y N 268 PHE OXT O N N 269 PHE H H N N 270 PHE H2 H N N 271 PHE HA H N N 272 PHE HB2 H N N 273 PHE HB3 H N N 274 PHE HD1 H N N 275 PHE HD2 H N N 276 PHE HE1 H N N 277 PHE HE2 H N N 278 PHE HZ H N N 279 PHE HXT H N N 280 SER N N N N 281 SER CA C N S 282 SER C C N N 283 SER O O N N 284 SER CB C N N 285 SER OG O N N 286 SER OXT O N N 287 SER H H N N 288 SER H2 H N N 289 SER HA H N N 290 SER HB2 H N N 291 SER HB3 H N N 292 SER HG H N N 293 SER HXT H N N 294 TYR N N N N 295 TYR CA C N S 296 TYR C C N N 297 TYR O O N N 298 TYR CB C N N 299 TYR CG C Y N 300 TYR CD1 C Y N 301 TYR CD2 C Y N 302 TYR CE1 C Y N 303 TYR CE2 C Y N 304 TYR CZ C Y N 305 TYR OH O N N 306 TYR OXT O N N 307 TYR H H N N 308 TYR H2 H N N 309 TYR HA H N N 310 TYR HB2 H N N 311 TYR HB3 H N N 312 TYR HD1 H N N 313 TYR HD2 H N N 314 TYR HE1 H N N 315 TYR HE2 H N N 316 TYR HH H N N 317 TYR HXT H N N 318 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ACE C O doub N N 1 ACE C CH3 sing N N 2 ACE C H sing N N 3 ACE CH3 H1 sing N N 4 ACE CH3 H2 sing N N 5 ACE CH3 H3 sing N N 6 ALA N CA sing N N 7 ALA N H sing N N 8 ALA N H2 sing N N 9 ALA CA C sing N N 10 ALA CA CB sing N N 11 ALA CA HA sing N N 12 ALA C O doub N N 13 ALA C OXT sing N N 14 ALA CB HB1 sing N N 15 ALA CB HB2 sing N N 16 ALA CB HB3 sing N N 17 ALA OXT HXT sing N N 18 ARG N CA sing N N 19 ARG N H sing N N 20 ARG N H2 sing N N 21 ARG CA C sing N N 22 ARG CA CB sing N N 23 ARG CA HA sing N N 24 ARG C O doub N N 25 ARG C OXT sing N N 26 ARG CB CG sing N N 27 ARG CB HB2 sing N N 28 ARG CB HB3 sing N N 29 ARG CG CD sing N N 30 ARG CG HG2 sing N N 31 ARG CG HG3 sing N N 32 ARG CD NE sing N N 33 ARG CD HD2 sing N N 34 ARG CD HD3 sing N N 35 ARG NE CZ sing N N 36 ARG NE HE sing N N 37 ARG CZ NH1 sing N N 38 ARG CZ NH2 doub N N 39 ARG NH1 HH11 sing N N 40 ARG NH1 HH12 sing N N 41 ARG NH2 HH21 sing N N 42 ARG NH2 HH22 sing N N 43 ARG OXT HXT sing N N 44 ASP N CA sing N N 45 ASP N H sing N N 46 ASP N H2 sing N N 47 ASP CA C sing N N 48 ASP CA CB sing N N 49 ASP CA HA sing N N 50 ASP C O doub N N 51 ASP C OXT sing N N 52 ASP CB CG sing N N 53 ASP CB HB2 sing N N 54 ASP CB HB3 sing N N 55 ASP CG OD1 doub N N 56 ASP CG OD2 sing N N 57 ASP OD2 HD2 sing N N 58 ASP OXT HXT sing N N 59 DAL N CA sing N N 60 DAL N H sing N N 61 DAL N H2 sing N N 62 DAL CA CB sing N N 63 DAL CA C sing N N 64 DAL CA HA sing N N 65 DAL CB HB1 sing N N 66 DAL CB HB2 sing N N 67 DAL CB HB3 sing N N 68 DAL C O doub N N 69 DAL C OXT sing N N 70 DAL OXT HXT sing N N 71 DBZ N CA sing N N 72 DBZ N H sing N N 73 DBZ N H2 sing N N 74 DBZ CA CB sing N N 75 DBZ CA C sing N N 76 DBZ CA HA sing N N 77 DBZ CB NG sing N N 78 DBZ CB HB1 sing N N 79 DBZ CB HB2 sing N N 80 DBZ NG CD2 sing N N 81 DBZ NG HNG sing N N 82 DBZ CD2 OD2 doub N N 83 DBZ CD2 C1 sing N N 84 DBZ C1 C2 doub Y N 85 DBZ C1 C6 sing Y N 86 DBZ C2 C3 sing Y N 87 DBZ C2 H1 sing N N 88 DBZ C6 C5 doub Y N 89 DBZ C6 H6 sing N N 90 DBZ C3 C4 doub Y N 91 DBZ C3 H3 sing N N 92 DBZ C5 C4 sing Y N 93 DBZ C5 H5 sing N N 94 DBZ C4 H4 sing N N 95 DBZ C O doub N N 96 DBZ C OXT sing N N 97 DBZ OXT HXT sing N N 98 DPR N CA sing N N 99 DPR N CD sing N N 100 DPR N H sing N N 101 DPR CA CB sing N N 102 DPR CA C sing N N 103 DPR CA HA sing N N 104 DPR CB CG sing N N 105 DPR CB HB2 sing N N 106 DPR CB HB3 sing N N 107 DPR CG CD sing N N 108 DPR CG HG2 sing N N 109 DPR CG HG3 sing N N 110 DPR CD HD2 sing N N 111 DPR CD HD3 sing N N 112 DPR C O doub N N 113 DPR C OXT sing N N 114 DPR OXT HXT sing N N 115 GLU N CA sing N N 116 GLU N H sing N N 117 GLU N H2 sing N N 118 GLU CA C sing N N 119 GLU CA CB sing N N 120 GLU CA HA sing N N 121 GLU C O doub N N 122 GLU C OXT sing N N 123 GLU CB CG sing N N 124 GLU CB HB2 sing N N 125 GLU CB HB3 sing N N 126 GLU CG CD sing N N 127 GLU CG HG2 sing N N 128 GLU CG HG3 sing N N 129 GLU CD OE1 doub N N 130 GLU CD OE2 sing N N 131 GLU OE2 HE2 sing N N 132 GLU OXT HXT sing N N 133 GLY N CA sing N N 134 GLY N H sing N N 135 GLY N H2 sing N N 136 GLY CA C sing N N 137 GLY CA HA2 sing N N 138 GLY CA HA3 sing N N 139 GLY C O doub N N 140 GLY C OXT sing N N 141 GLY OXT HXT sing N N 142 HOH O H1 sing N N 143 HOH O H2 sing N N 144 ILE N CA sing N N 145 ILE N H sing N N 146 ILE N H2 sing N N 147 ILE CA C sing N N 148 ILE CA CB sing N N 149 ILE CA HA sing N N 150 ILE C O doub N N 151 ILE C OXT sing N N 152 ILE CB CG1 sing N N 153 ILE CB CG2 sing N N 154 ILE CB HB sing N N 155 ILE CG1 CD1 sing N N 156 ILE CG1 HG12 sing N N 157 ILE CG1 HG13 sing N N 158 ILE CG2 HG21 sing N N 159 ILE CG2 HG22 sing N N 160 ILE CG2 HG23 sing N N 161 ILE CD1 HD11 sing N N 162 ILE CD1 HD12 sing N N 163 ILE CD1 HD13 sing N N 164 ILE OXT HXT sing N N 165 IPA C1 C2 sing N N 166 IPA C1 H11 sing N N 167 IPA C1 H12 sing N N 168 IPA C1 H13 sing N N 169 IPA C2 C3 sing N N 170 IPA C2 O2 sing N N 171 IPA C2 H2 sing N N 172 IPA C3 H31 sing N N 173 IPA C3 H32 sing N N 174 IPA C3 H33 sing N N 175 IPA O2 HO2 sing N N 176 LEU N CA sing N N 177 LEU N H sing N N 178 LEU N H2 sing N N 179 LEU CA C sing N N 180 LEU CA CB sing N N 181 LEU CA HA sing N N 182 LEU C O doub N N 183 LEU C OXT sing N N 184 LEU CB CG sing N N 185 LEU CB HB2 sing N N 186 LEU CB HB3 sing N N 187 LEU CG CD1 sing N N 188 LEU CG CD2 sing N N 189 LEU CG HG sing N N 190 LEU CD1 HD11 sing N N 191 LEU CD1 HD12 sing N N 192 LEU CD1 HD13 sing N N 193 LEU CD2 HD21 sing N N 194 LEU CD2 HD22 sing N N 195 LEU CD2 HD23 sing N N 196 LEU OXT HXT sing N N 197 LYS N CA sing N N 198 LYS N H sing N N 199 LYS N H2 sing N N 200 LYS CA C sing N N 201 LYS CA CB sing N N 202 LYS CA HA sing N N 203 LYS C O doub N N 204 LYS C OXT sing N N 205 LYS CB CG sing N N 206 LYS CB HB2 sing N N 207 LYS CB HB3 sing N N 208 LYS CG CD sing N N 209 LYS CG HG2 sing N N 210 LYS CG HG3 sing N N 211 LYS CD CE sing N N 212 LYS CD HD2 sing N N 213 LYS CD HD3 sing N N 214 LYS CE NZ sing N N 215 LYS CE HE2 sing N N 216 LYS CE HE3 sing N N 217 LYS NZ HZ1 sing N N 218 LYS NZ HZ2 sing N N 219 LYS NZ HZ3 sing N N 220 LYS OXT HXT sing N N 221 MSO N CA sing N N 222 MSO N H sing N N 223 MSO N H2 sing N N 224 MSO CA CB sing N N 225 MSO CA C sing N N 226 MSO CA HA sing N N 227 MSO CB CG sing N N 228 MSO CB HB2 sing N N 229 MSO CB HB3 sing N N 230 MSO C O doub N N 231 MSO C OXT sing N N 232 MSO CG SE sing N N 233 MSO CG HG2 sing N N 234 MSO CG HG3 sing N N 235 MSO SE OE doub N N 236 MSO SE CE sing N N 237 MSO CE HE1 sing N N 238 MSO CE HE2 sing N N 239 MSO CE HE3 sing N N 240 MSO OXT HXT sing N N 241 NH2 N HN1 sing N N 242 NH2 N HN2 sing N N 243 PHE N CA sing N N 244 PHE N H sing N N 245 PHE N H2 sing N N 246 PHE CA C sing N N 247 PHE CA CB sing N N 248 PHE CA HA sing N N 249 PHE C O doub N N 250 PHE C OXT sing N N 251 PHE CB CG sing N N 252 PHE CB HB2 sing N N 253 PHE CB HB3 sing N N 254 PHE CG CD1 doub Y N 255 PHE CG CD2 sing Y N 256 PHE CD1 CE1 sing Y N 257 PHE CD1 HD1 sing N N 258 PHE CD2 CE2 doub Y N 259 PHE CD2 HD2 sing N N 260 PHE CE1 CZ doub Y N 261 PHE CE1 HE1 sing N N 262 PHE CE2 CZ sing Y N 263 PHE CE2 HE2 sing N N 264 PHE CZ HZ sing N N 265 PHE OXT HXT sing N N 266 SER N CA sing N N 267 SER N H sing N N 268 SER N H2 sing N N 269 SER CA C sing N N 270 SER CA CB sing N N 271 SER CA HA sing N N 272 SER C O doub N N 273 SER C OXT sing N N 274 SER CB OG sing N N 275 SER CB HB2 sing N N 276 SER CB HB3 sing N N 277 SER OG HG sing N N 278 SER OXT HXT sing N N 279 TYR N CA sing N N 280 TYR N H sing N N 281 TYR N H2 sing N N 282 TYR CA C sing N N 283 TYR CA CB sing N N 284 TYR CA HA sing N N 285 TYR C O doub N N 286 TYR C OXT sing N N 287 TYR CB CG sing N N 288 TYR CB HB2 sing N N 289 TYR CB HB3 sing N N 290 TYR CG CD1 doub Y N 291 TYR CG CD2 sing Y N 292 TYR CD1 CE1 sing Y N 293 TYR CD1 HD1 sing N N 294 TYR CD2 CE2 doub Y N 295 TYR CD2 HD2 sing N N 296 TYR CE1 CZ doub Y N 297 TYR CE1 HE1 sing N N 298 TYR CE2 CZ sing Y N 299 TYR CE2 HE2 sing N N 300 TYR CZ OH sing N N 301 TYR OH HH sing N N 302 TYR OXT HXT sing N N 303 # _atom_sites.entry_id 1SNE _atom_sites.fract_transf_matrix[1][1] 0.017268 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.010507 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.046893 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.036700 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O SE # loop_