HEADER REPLICATION 23-MAR-04 1SRU TITLE CRYSTAL STRUCTURE OF FULL LENGTH E. COLI SSB PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: SINGLE-STRAND BINDING PROTEIN; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: RESIDUES 0-112; COMPND 5 SYNONYM: SSB, HELIX-DESTABILIZING PROTEIN; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: SSB, EXRB, LEXC, B4059, C5049, Z5658, ECS5041, SF4145, S3584; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS REPLICATION EXPDTA X-RAY DIFFRACTION AUTHOR S.N.SAVVIDES,S.RAGHUNATHAN,K.FUETTERER,A.G.KOZLOV,T.M.LOHMAN, AUTHOR 2 G.WAKSMAN REVDAT 3 14-FEB-24 1SRU 1 REMARK REVDAT 2 24-FEB-09 1SRU 1 VERSN REVDAT 1 03-AUG-04 1SRU 0 JRNL AUTH S.N.SAVVIDES,S.RAGHUNATHAN,K.FUETTERER,A.G.KOZLOV, JRNL AUTH 2 T.M.LOHMAN,G.WAKSMAN JRNL TITL THE C-TERMINAL DOMAIN OF FULL-LENGTH E. COLI SSB IS JRNL TITL 2 DISORDERED EVEN WHEN BOUND TO DNA. JRNL REF PROTEIN SCI. V. 13 1942 2004 JRNL REFN ISSN 0961-8368 JRNL PMID 15169953 JRNL DOI 10.1110/PS.04661904 REMARK 2 REMARK 2 RESOLUTION. 3.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.92 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 482092.980 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 97.9 REMARK 3 NUMBER OF REFLECTIONS : 11309 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.288 REMARK 3 FREE R VALUE : 0.309 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.300 REMARK 3 FREE R VALUE TEST SET COUNT : 1166 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.009 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.51 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.20 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 1609 REMARK 3 BIN R VALUE (WORKING SET) : 0.3350 REMARK 3 BIN FREE R VALUE : 0.3750 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 11.10 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 200 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.027 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2808 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 102.7 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 12.71000 REMARK 3 B22 (A**2) : 12.71000 REMARK 3 B33 (A**2) : -25.42000 REMARK 3 B12 (A**2) : 14.47000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.49 REMARK 3 ESD FROM SIGMAA (A) : 0.57 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.58 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.58 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.028 REMARK 3 BOND ANGLES (DEGREES) : 2.300 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 28.00 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.210 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.32 REMARK 3 BSOL : 102.8 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1SRU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-MAR-04. REMARK 100 THE DEPOSITION ID IS D_1000021948. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9879, 0.9794, 0.9792 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : CUSTOM-MADE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11620 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.300 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.40 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD/MAD/MR REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66.66 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.69 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG4000, PEG200, HEPES, PH 7.5, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 1 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -Y,-X,-Z+2/3 REMARK 290 5555 -X+Y,Y,-Z+1/3 REMARK 290 6555 X,X-Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 116.30667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 232.61333 REMARK 290 SMTRY1 4 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 232.61333 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 116.30667 REMARK 290 SMTRY1 6 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6300 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19270 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -25.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1000 REMARK 465 ARG A 1041 REMARK 465 ASP A 1042 REMARK 465 LYS A 1043 REMARK 465 ALA A 1044 REMARK 465 THR A 1045 REMARK 465 GLY A 1046 REMARK 465 GLU A 1047 REMARK 465 MET A 1048 REMARK 465 LYS A 1049 REMARK 465 SER A 1092 REMARK 465 GLY A 1093 REMARK 465 GLN A 1094 REMARK 465 MET B 2000 REMARK 465 TYR B 2022 REMARK 465 MET B 2023 REMARK 465 PRO B 2024 REMARK 465 ASN B 2025 REMARK 465 GLY B 2026 REMARK 465 GLY B 2027 REMARK 465 ARG B 2041 REMARK 465 ASP B 2042 REMARK 465 LYS B 2043 REMARK 465 ALA B 2044 REMARK 465 THR B 2045 REMARK 465 GLY B 2046 REMARK 465 GLU B 2047 REMARK 465 MET B 2048 REMARK 465 LYS B 2049 REMARK 465 MET C 3000 REMARK 465 MET C 3023 REMARK 465 PRO C 3024 REMARK 465 ASN C 3025 REMARK 465 GLY C 3026 REMARK 465 GLY C 3027 REMARK 465 ARG C 3041 REMARK 465 ASP C 3042 REMARK 465 LYS C 3043 REMARK 465 ALA C 3044 REMARK 465 THR C 3045 REMARK 465 GLY C 3046 REMARK 465 GLU C 3047 REMARK 465 MET C 3048 REMARK 465 LYS C 3049 REMARK 465 GLY C 3093 REMARK 465 GLN C 3094 REMARK 465 MET D 4000 REMARK 465 ARG D 4041 REMARK 465 ASP D 4042 REMARK 465 LYS D 4043 REMARK 465 ALA D 4044 REMARK 465 THR D 4045 REMARK 465 GLY D 4046 REMARK 465 GLU D 4047 REMARK 465 MET D 4048 REMARK 465 LYS D 4049 REMARK 465 GLY D 4093 REMARK 465 GLN D 4094 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A1002 OG REMARK 470 ARG A1003 CG CD NE CZ NH1 NH2 REMARK 470 GLU A1019 CG CD OE1 OE2 REMARK 470 ASN A1025 CG OD1 ND2 REMARK 470 GLU A1038 CG CD OE1 OE2 REMARK 470 GLU A1050 CG CD OE1 OE2 REMARK 470 GLN A1051 CG CD OE1 NE2 REMARK 470 ARG A1056 CG CD NE CZ NH1 NH2 REMARK 470 LYS A1062 CG CD CE NZ REMARK 470 GLU A1065 CG CD OE1 OE2 REMARK 470 GLU A1069 CG CD OE1 OE2 REMARK 470 TYR A1070 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ARG A1072 CG CD NE CZ NH1 NH2 REMARK 470 LYS A1073 CG CD CE NZ REMARK 470 ARG A1084 CG CD NE CZ NH1 NH2 REMARK 470 LYS A1087 CG CD CE NZ REMARK 470 GLN A1091 CG CD OE1 NE2 REMARK 470 TYR A1097 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ASN A1104 CG OD1 ND2 REMARK 470 VAL A1105 CG1 CG2 REMARK 470 MET A1111 CG SD CE REMARK 470 SER B2002 OG REMARK 470 ARG B2003 CG CD NE CZ NH1 NH2 REMARK 470 GLN B2016 CG CD OE1 NE2 REMARK 470 GLU B2019 CG CD OE1 OE2 REMARK 470 ARG B2021 CG CD NE CZ NH1 NH2 REMARK 470 GLU B2038 CG CD OE1 OE2 REMARK 470 GLU B2050 CG CD OE1 OE2 REMARK 470 ARG B2056 CG CD NE CZ NH1 NH2 REMARK 470 LYS B2062 CG CD CE NZ REMARK 470 GLU B2065 CG CD OE1 OE2 REMARK 470 GLU B2069 CG CD OE1 OE2 REMARK 470 TYR B2070 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ARG B2072 CG CD NE CZ NH1 NH2 REMARK 470 LYS B2073 CG CD CE NZ REMARK 470 LYS B2087 CG CD CE NZ REMARK 470 ASN B2104 CG OD1 ND2 REMARK 470 VAL B2105 CG1 CG2 REMARK 470 MET B2111 CG SD CE REMARK 470 SER C3002 OG REMARK 470 ARG C3003 CG CD NE CZ NH1 NH2 REMARK 470 ASP C3017 CG OD1 OD2 REMARK 470 GLU C3019 CG CD OE1 OE2 REMARK 470 THR C3033 OG1 CG2 REMARK 470 GLN C3051 CG CD OE1 NE2 REMARK 470 ARG C3056 CG CD NE CZ NH1 NH2 REMARK 470 LYS C3062 CG CD CE NZ REMARK 470 GLU C3065 CG CD OE1 OE2 REMARK 470 SER C3068 OG REMARK 470 GLU C3069 CG CD OE1 OE2 REMARK 470 ARG C3072 CG CD NE CZ NH1 NH2 REMARK 470 LYS C3073 CG CD CE NZ REMARK 470 LYS C3087 CG CD CE NZ REMARK 470 GLN C3091 CG CD OE1 NE2 REMARK 470 ASN C3104 CG OD1 ND2 REMARK 470 VAL C3105 CG1 CG2 REMARK 470 MET C3111 CG SD CE REMARK 470 SER D4002 OG REMARK 470 ARG D4003 CG CD NE CZ NH1 NH2 REMARK 470 GLU D4019 CG CD OE1 OE2 REMARK 470 ARG D4021 CG CD NE CZ NH1 NH2 REMARK 470 ASN D4025 CG OD1 ND2 REMARK 470 ARG D4056 CG CD NE CZ NH1 NH2 REMARK 470 LYS D4062 CG CD CE NZ REMARK 470 GLU D4069 CG CD OE1 OE2 REMARK 470 TYR D4070 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ARG D4072 CG CD NE CZ NH1 NH2 REMARK 470 LYS D4073 CG CD CE NZ REMARK 470 LYS D4087 CG CD CE NZ REMARK 470 TYR D4097 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ASN D4104 CG OD1 ND2 REMARK 470 VAL D4105 CG1 CG2 REMARK 470 MET D4111 CG SD CE REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 VAL B2020 CB VAL B2020 CG1 -0.194 REMARK 500 VAL B2020 CB VAL B2020 CG2 -0.197 REMARK 500 THR B2052 CB THR B2052 CG2 -0.328 REMARK 500 VAL B2058 CB VAL B2058 CG1 -0.244 REMARK 500 VAL B2058 CB VAL B2058 CG2 -0.254 REMARK 500 LEU B2071 CG LEU B2071 CD1 -0.363 REMARK 500 LEU B2071 CG LEU B2071 CD2 -0.281 REMARK 500 TRP B2088 CB TRP B2088 CG -0.125 REMARK 500 TRP B2088 CG TRP B2088 CD1 -0.236 REMARK 500 THR B2089 C THR B2089 O -0.123 REMARK 500 VAL C3020 CB VAL C3020 CG1 -0.180 REMARK 500 VAL C3020 CB VAL C3020 CG2 -0.280 REMARK 500 THR C3052 CB THR C3052 CG2 -0.330 REMARK 500 VAL C3058 CB VAL C3058 CG1 -0.221 REMARK 500 VAL C3058 CB VAL C3058 CG2 -0.296 REMARK 500 LEU C3071 CG LEU C3071 CD1 -0.326 REMARK 500 LEU C3071 CG LEU C3071 CD2 -0.299 REMARK 500 TRP C3088 CG TRP C3088 CD1 -0.226 REMARK 500 TRP C3088 NE1 TRP C3088 CE2 -0.078 REMARK 500 TRP C3088 CD2 TRP C3088 CE3 -0.098 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 VAL B2020 CG1 - CB - CG2 ANGL. DEV. = -17.3 DEGREES REMARK 500 THR B2052 OG1 - CB - CG2 ANGL. DEV. = -23.1 DEGREES REMARK 500 VAL B2058 CG1 - CB - CG2 ANGL. DEV. = -16.9 DEGREES REMARK 500 LEU B2071 CD1 - CG - CD2 ANGL. DEV. = -32.8 DEGREES REMARK 500 ILE B2079 CG1 - CB - CG2 ANGL. DEV. = -16.8 DEGREES REMARK 500 ARG B2084 NE - CZ - NH1 ANGL. DEV. = -3.2 DEGREES REMARK 500 ARG B2084 NE - CZ - NH2 ANGL. DEV. = 4.2 DEGREES REMARK 500 ARG B2086 NE - CZ - NH1 ANGL. DEV. = -4.1 DEGREES REMARK 500 ARG B2086 NE - CZ - NH2 ANGL. DEV. = 6.0 DEGREES REMARK 500 TRP B2088 CB - CG - CD2 ANGL. DEV. = 8.6 DEGREES REMARK 500 TRP B2088 CB - CG - CD1 ANGL. DEV. = -8.4 DEGREES REMARK 500 THR B2089 CA - C - N ANGL. DEV. = 14.0 DEGREES REMARK 500 ASP B2090 CB - CG - OD2 ANGL. DEV. = -6.9 DEGREES REMARK 500 VAL C3020 CG1 - CB - CG2 ANGL. DEV. = -17.3 DEGREES REMARK 500 ARG C3021 NE - CZ - NH2 ANGL. DEV. = -3.7 DEGREES REMARK 500 THR C3052 OG1 - CB - CG2 ANGL. DEV. = -20.5 DEGREES REMARK 500 VAL C3058 CG1 - CB - CG2 ANGL. DEV. = -18.7 DEGREES REMARK 500 LEU C3071 CD1 - CG - CD2 ANGL. DEV. = -33.3 DEGREES REMARK 500 ARG C3084 NE - CZ - NH1 ANGL. DEV. = -4.0 DEGREES REMARK 500 ARG C3084 NE - CZ - NH2 ANGL. DEV. = 3.6 DEGREES REMARK 500 ARG C3086 NE - CZ - NH2 ANGL. DEV. = 3.7 DEGREES REMARK 500 TRP C3088 CB - CG - CD2 ANGL. DEV. = 8.1 DEGREES REMARK 500 TRP C3088 CB - CG - CD1 ANGL. DEV. = -7.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A1003 118.01 54.16 REMARK 500 ASP A1017 147.08 -29.29 REMARK 500 PRO A1024 -118.60 -44.94 REMARK 500 ALA A1028 84.75 -164.64 REMARK 500 GLN A1051 106.24 -164.31 REMARK 500 LYS A1073 -106.13 -16.32 REMARK 500 ASN A1104 -102.86 -112.12 REMARK 500 VAL A1105 -105.24 -56.63 REMARK 500 SER B2002 -123.95 -89.04 REMARK 500 ARG B2003 91.21 34.44 REMARK 500 GLN B2051 96.86 153.34 REMARK 500 LYS B2073 -76.06 -24.91 REMARK 500 SER B2075 134.96 -32.03 REMARK 500 ASP B2090 122.86 87.10 REMARK 500 GLN B2091 -34.88 -29.38 REMARK 500 ASN B2104 -124.42 -106.47 REMARK 500 VAL B2105 -96.46 -32.80 REMARK 500 THR B2108 149.65 -177.25 REMARK 500 SER C3002 -128.23 -89.74 REMARK 500 ARG C3003 89.56 37.23 REMARK 500 ARG C3021 -167.73 -119.04 REMARK 500 VAL C3029 115.02 -162.36 REMARK 500 GLN C3051 102.00 174.37 REMARK 500 LYS C3073 -73.90 -29.07 REMARK 500 SER C3075 130.53 -26.75 REMARK 500 ASN C3104 -125.43 -101.96 REMARK 500 VAL C3105 -93.30 -34.53 REMARK 500 THR C3108 149.92 176.09 REMARK 500 ARG D4003 174.99 62.47 REMARK 500 GLN D4016 137.09 173.27 REMARK 500 ASP D4017 152.90 -45.34 REMARK 500 PRO D4024 -115.60 -40.17 REMARK 500 ASN D4025 98.90 -63.20 REMARK 500 ALA D4028 92.30 -179.09 REMARK 500 SER D4039 -166.92 -118.36 REMARK 500 LYS D4073 -117.91 12.27 REMARK 500 ASN D4104 -102.90 -131.40 REMARK 500 VAL D4105 -109.02 -51.29 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR A1078 0.06 SIDE CHAIN REMARK 500 TYR C3078 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 1SRU A 1000 1112 UNP P02339 SSB_ECOLI 0 112 DBREF 1SRU B 2000 2112 UNP P02339 SSB_ECOLI 0 112 DBREF 1SRU C 3000 3112 UNP P02339 SSB_ECOLI 0 112 DBREF 1SRU D 4000 4112 UNP P02339 SSB_ECOLI 0 112 SEQRES 1 A 113 MET ALA SER ARG GLY VAL ASN LYS VAL ILE LEU VAL GLY SEQRES 2 A 113 ASN LEU GLY GLN ASP PRO GLU VAL ARG TYR MET PRO ASN SEQRES 3 A 113 GLY GLY ALA VAL ALA ASN ILE THR LEU ALA THR SER GLU SEQRES 4 A 113 SER TRP ARG ASP LYS ALA THR GLY GLU MET LYS GLU GLN SEQRES 5 A 113 THR GLU TRP HIS ARG VAL VAL LEU PHE GLY LYS LEU ALA SEQRES 6 A 113 GLU VAL ALA SER GLU TYR LEU ARG LYS GLY SER GLN VAL SEQRES 7 A 113 TYR ILE GLU GLY GLN LEU ARG THR ARG LYS TRP THR ASP SEQRES 8 A 113 GLN SER GLY GLN ASP ARG TYR THR THR GLU VAL VAL VAL SEQRES 9 A 113 ASN VAL GLY GLY THR MET GLN MET LEU SEQRES 1 B 113 MET ALA SER ARG GLY VAL ASN LYS VAL ILE LEU VAL GLY SEQRES 2 B 113 ASN LEU GLY GLN ASP PRO GLU VAL ARG TYR MET PRO ASN SEQRES 3 B 113 GLY GLY ALA VAL ALA ASN ILE THR LEU ALA THR SER GLU SEQRES 4 B 113 SER TRP ARG ASP LYS ALA THR GLY GLU MET LYS GLU GLN SEQRES 5 B 113 THR GLU TRP HIS ARG VAL VAL LEU PHE GLY LYS LEU ALA SEQRES 6 B 113 GLU VAL ALA SER GLU TYR LEU ARG LYS GLY SER GLN VAL SEQRES 7 B 113 TYR ILE GLU GLY GLN LEU ARG THR ARG LYS TRP THR ASP SEQRES 8 B 113 GLN SER GLY GLN ASP ARG TYR THR THR GLU VAL VAL VAL SEQRES 9 B 113 ASN VAL GLY GLY THR MET GLN MET LEU SEQRES 1 C 113 MET ALA SER ARG GLY VAL ASN LYS VAL ILE LEU VAL GLY SEQRES 2 C 113 ASN LEU GLY GLN ASP PRO GLU VAL ARG TYR MET PRO ASN SEQRES 3 C 113 GLY GLY ALA VAL ALA ASN ILE THR LEU ALA THR SER GLU SEQRES 4 C 113 SER TRP ARG ASP LYS ALA THR GLY GLU MET LYS GLU GLN SEQRES 5 C 113 THR GLU TRP HIS ARG VAL VAL LEU PHE GLY LYS LEU ALA SEQRES 6 C 113 GLU VAL ALA SER GLU TYR LEU ARG LYS GLY SER GLN VAL SEQRES 7 C 113 TYR ILE GLU GLY GLN LEU ARG THR ARG LYS TRP THR ASP SEQRES 8 C 113 GLN SER GLY GLN ASP ARG TYR THR THR GLU VAL VAL VAL SEQRES 9 C 113 ASN VAL GLY GLY THR MET GLN MET LEU SEQRES 1 D 113 MET ALA SER ARG GLY VAL ASN LYS VAL ILE LEU VAL GLY SEQRES 2 D 113 ASN LEU GLY GLN ASP PRO GLU VAL ARG TYR MET PRO ASN SEQRES 3 D 113 GLY GLY ALA VAL ALA ASN ILE THR LEU ALA THR SER GLU SEQRES 4 D 113 SER TRP ARG ASP LYS ALA THR GLY GLU MET LYS GLU GLN SEQRES 5 D 113 THR GLU TRP HIS ARG VAL VAL LEU PHE GLY LYS LEU ALA SEQRES 6 D 113 GLU VAL ALA SER GLU TYR LEU ARG LYS GLY SER GLN VAL SEQRES 7 D 113 TYR ILE GLU GLY GLN LEU ARG THR ARG LYS TRP THR ASP SEQRES 8 D 113 GLN SER GLY GLN ASP ARG TYR THR THR GLU VAL VAL VAL SEQRES 9 D 113 ASN VAL GLY GLY THR MET GLN MET LEU HELIX 1 1 GLY A 1061 LEU A 1071 1 11 HELIX 2 2 GLY B 2061 LEU B 2071 1 11 HELIX 3 3 GLY C 3061 LEU C 3071 1 11 HELIX 4 4 GLY D 4061 LEU D 4071 1 11 SHEET 1 A 8 GLU A1019 ARG A1021 0 SHEET 2 A 8 VAL A1029 GLU A1038 -1 O VAL A1029 N ARG A1021 SHEET 3 A 8 GLN A1051 PHE A1060 -1 O VAL A1057 N ILE A1032 SHEET 4 A 8 ARG A1096 VAL A1102 1 O VAL A1101 N ARG A1056 SHEET 5 A 8 GLN A1076 TRP A1088 -1 N GLN A1082 O VAL A1102 SHEET 6 A 8 THR A1108 MET A1111 -1 O THR A1108 N GLU A1080 SHEET 7 A 8 GLN A1076 TRP A1088 -1 N GLU A1080 O THR A1108 SHEET 8 A 8 VAL A1005 LEU A1014 -1 N LEU A1010 O ILE A1079 SHEET 1 B 8 VAL B2005 LEU B2014 0 SHEET 2 B 8 GLN B2076 TRP B2088 -1 O ILE B2079 N LEU B2010 SHEET 3 B 8 THR B2108 MET B2111 -1 O GLN B2110 N TYR B2078 SHEET 4 B 8 GLN B2076 TRP B2088 -1 N TYR B2078 O GLN B2110 SHEET 5 B 8 ARG B2096 VAL B2103 -1 O ARG B2096 N TRP B2088 SHEET 6 B 8 THR B2052 PHE B2060 1 N ARG B2056 O VAL B2101 SHEET 7 B 8 VAL B2029 SER B2037 -1 N LEU B2034 O HIS B2055 SHEET 8 B 8 GLU B2019 VAL B2020 -1 N GLU B2019 O ASN B2031 SHEET 1 C 8 GLU C3019 ARG C3021 0 SHEET 2 C 8 VAL C3029 SER C3037 -1 O ASN C3031 N GLU C3019 SHEET 3 C 8 THR C3052 PHE C3060 -1 O VAL C3057 N ILE C3032 SHEET 4 C 8 ARG C3096 VAL C3103 1 O VAL C3101 N ARG C3056 SHEET 5 C 8 GLN C3076 TRP C3088 -1 N ARG C3084 O GLU C3100 SHEET 6 C 8 THR C3108 MET C3111 -1 O GLN C3110 N TYR C3078 SHEET 7 C 8 GLN C3076 TRP C3088 -1 N TYR C3078 O GLN C3110 SHEET 8 C 8 VAL C3005 LEU C3014 -1 N LEU C3010 O ILE C3079 SHEET 1 D 8 ASN D4006 LEU D4014 0 SHEET 2 D 8 GLN D4076 TRP D4088 -1 O ILE D4079 N LEU D4010 SHEET 3 D 8 THR D4108 MET D4111 -1 O THR D4108 N GLU D4080 SHEET 4 D 8 GLN D4076 TRP D4088 -1 N GLU D4080 O THR D4108 SHEET 5 D 8 ARG D4096 VAL D4103 -1 O GLU D4100 N ARG D4084 SHEET 6 D 8 GLN D4051 PHE D4060 1 N ARG D4056 O VAL D4101 SHEET 7 D 8 VAL D4029 GLU D4038 -1 N ILE D4032 O VAL D4057 SHEET 8 D 8 GLU D4019 ARG D4021 -1 N ARG D4021 O VAL D4029 CRYST1 60.850 60.850 348.920 90.00 90.00 120.00 P 31 1 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016434 0.009488 0.000000 0.00000 SCALE2 0.000000 0.018976 0.000000 0.00000 SCALE3 0.000000 0.000000 0.002866 0.00000