HEADER TRANSFERASE 02-APR-04 1SZ2 TITLE CRYSTAL STRUCTURE OF E. COLI GLUCOKINASE IN COMPLEX WITH GLUCOSE COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLUCOKINASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: GLUCOKINASE; COMPND 5 SYNONYM: GLUCOSE KINASE; COMPND 6 EC: 2.7.1.2; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: GLK, B2388, Z3654, ECS3268; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PFO4 KEYWDS GLUCOKINASE, ATP-DEPENDENT, GLUCOSE BINDING, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR V.V.LUNIN,Y.LI,J.D.SCHRAG,P.IANNUZZI,A.MATTE,M.CYGLER REVDAT 5 15-NOV-23 1SZ2 1 REMARK REVDAT 4 23-AUG-23 1SZ2 1 HETSYN REVDAT 3 29-JUL-20 1SZ2 1 COMPND REMARK SEQADV HETNAM REVDAT 3 2 1 LINK SITE REVDAT 2 24-FEB-09 1SZ2 1 VERSN REVDAT 1 16-NOV-04 1SZ2 0 JRNL AUTH V.V.LUNIN,Y.LI,J.D.SCHRAG,P.IANNUZZI,M.CYGLER,A.MATTE JRNL TITL CRYSTAL STRUCTURES OF ESCHERICHIA COLI ATP-DEPENDENT JRNL TITL 2 GLUCOKINASE AND ITS COMPLEX WITH GLUCOSE JRNL REF J.BACTERIOL. V. 186 6915 2004 JRNL REFN ISSN 0021-9193 JRNL PMID 15466045 JRNL DOI 10.1128/JB.186.20.6915-6927.2004 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.08 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 89.5 REMARK 3 NUMBER OF REFLECTIONS : 30259 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.197 REMARK 3 R VALUE (WORKING SET) : 0.193 REMARK 3 FREE R VALUE : 0.265 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1606 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1516 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2100 REMARK 3 BIN FREE R VALUE SET COUNT : 85 REMARK 3 BIN FREE R VALUE : 0.2820 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4867 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 24 REMARK 3 SOLVENT ATOMS : 348 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 48.24 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.94000 REMARK 3 B22 (A**2) : 1.14000 REMARK 3 B33 (A**2) : 0.66000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.17000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.343 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.258 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.172 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.870 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.953 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.916 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5052 ; 0.015 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6838 ; 1.646 ; 1.963 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 637 ; 6.224 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 213 ;37.514 ;23.333 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 851 ;22.365 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 33 ;24.544 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 776 ; 0.117 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3775 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2447 ; 0.228 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 366 ; 0.231 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 30 ; 0.144 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 16 ; 0.691 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3159 ; 0.933 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5061 ; 1.736 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1893 ; 2.416 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1777 ; 3.896 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1SZ2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-APR-04. REMARK 100 THE DEPOSITION ID IS D_1000022109. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-JUN-03 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X8C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : D*TREK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31835 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 89.5 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05100 REMARK 200 FOR THE DATA SET : 12.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.28 REMARK 200 COMPLETENESS FOR SHELL (%) : 63.4 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.17100 REMARK 200 FOR SHELL : 3.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 1Q18 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 6000, MGCL2, TRIS-HCL BUFFER, PH REMARK 280 8.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 26.76900 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS THE DIMER IN THE ASYMMETRIC UNIT REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4310 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25850 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A -10 REMARK 465 GLY A -9 REMARK 465 SER A -8 REMARK 465 SER A -7 REMARK 465 HIS A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 GLY A 0 REMARK 465 SER A 1 REMARK 465 THR A 2 REMARK 465 MSE B -10 REMARK 465 GLY B -9 REMARK 465 SER B -8 REMARK 465 SER B -7 REMARK 465 HIS B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 HIS B -1 REMARK 465 GLY B 0 REMARK 465 SER B 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 1092 O HOH A 1192 1.39 REMARK 500 OD1 ASP A 302 O HOH A 1142 1.72 REMARK 500 O ARG A 178 O ILE A 181 2.03 REMARK 500 OE2 GLU B 170 NH2 ARG B 243 2.05 REMARK 500 OE2 GLU A 170 NH2 ARG A 243 2.08 REMARK 500 O HOH A 1175 O HOH B 2002 2.12 REMARK 500 N TRP A 79 O HOH A 1098 2.14 REMARK 500 N GLY A 182 O HOH A 1096 2.16 REMARK 500 NE ARG B 231 O HOH B 2144 2.16 REMARK 500 O HOH A 1026 O HOH B 2071 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 1077 O HOH A 1192 2555 0.67 REMARK 500 O HOH A 1067 O HOH A 1188 2555 1.60 REMARK 500 O HOH A 1077 O HOH A 1092 2555 1.92 REMARK 500 O HOH A 1143 O HOH B 2098 1455 1.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 225 CB - CG - OD2 ANGL. DEV. = 6.9 DEGREES REMARK 500 ARG A 243 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 ARG A 286 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 LYS A 288 CD - CE - NZ ANGL. DEV. = 13.8 DEGREES REMARK 500 ASP A 293 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 ASP B 70 CB - CG - OD2 ANGL. DEV. = 5.7 DEGREES REMARK 500 ASP B 148 CB - CG - OD2 ANGL. DEV. = 6.1 DEGREES REMARK 500 LEU B 307 CA - CB - CG ANGL. DEV. = 13.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 68 -89.94 -84.57 REMARK 500 HIS A 77 -146.12 -129.77 REMARK 500 THR A 78 78.40 168.61 REMARK 500 TRP A 79 -9.58 79.53 REMARK 500 PHE A 119 76.57 -117.62 REMARK 500 ALA A 122 -111.37 -115.15 REMARK 500 LYS A 149 -11.82 83.66 REMARK 500 ILE A 181 -168.69 -119.42 REMARK 500 HIS A 183 125.64 -38.72 REMARK 500 SER A 191 167.04 173.79 REMARK 500 CYS A 227 109.62 -161.87 REMARK 500 HIS B 52 -152.90 -87.37 REMARK 500 LYS B 53 57.64 -144.60 REMARK 500 ALA B 122 -108.32 -110.09 REMARK 500 ASP B 148 -111.91 72.63 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1Q18 RELATED DB: PDB REMARK 900 THE SAME PROTEIN WITHOUT SUBSTRATE DBREF 1SZ2 A 2 321 UNP P0A6V8 GLK_ECOLI 2 321 DBREF 1SZ2 B 2 321 UNP P0A6V8 GLK_ECOLI 2 321 SEQADV 1SZ2 MSE A -10 UNP P0A6V8 MODIFIED RESIDUE SEQADV 1SZ2 GLY A -9 UNP P0A6V8 CLONING ARTIFACT SEQADV 1SZ2 SER A -8 UNP P0A6V8 CLONING ARTIFACT SEQADV 1SZ2 SER A -7 UNP P0A6V8 CLONING ARTIFACT SEQADV 1SZ2 HIS A -6 UNP P0A6V8 EXPRESSION TAG SEQADV 1SZ2 HIS A -5 UNP P0A6V8 EXPRESSION TAG SEQADV 1SZ2 HIS A -4 UNP P0A6V8 EXPRESSION TAG SEQADV 1SZ2 HIS A -3 UNP P0A6V8 EXPRESSION TAG SEQADV 1SZ2 HIS A -2 UNP P0A6V8 EXPRESSION TAG SEQADV 1SZ2 HIS A -1 UNP P0A6V8 EXPRESSION TAG SEQADV 1SZ2 GLY A 0 UNP P0A6V8 CLONING ARTIFACT SEQADV 1SZ2 SER A 1 UNP P0A6V8 CLONING ARTIFACT SEQADV 1SZ2 MSE A 74 UNP P0A6V8 MET 74 MODIFIED RESIDUE SEQADV 1SZ2 MSE A 86 UNP P0A6V8 MET 86 MODIFIED RESIDUE SEQADV 1SZ2 MSE A 106 UNP P0A6V8 MET 106 MODIFIED RESIDUE SEQADV 1SZ2 MSE A 110 UNP P0A6V8 MET 110 MODIFIED RESIDUE SEQADV 1SZ2 MSE A 241 UNP P0A6V8 MET 241 MODIFIED RESIDUE SEQADV 1SZ2 MSE B -10 UNP P0A6V8 MODIFIED RESIDUE SEQADV 1SZ2 GLY B -9 UNP P0A6V8 CLONING ARTIFACT SEQADV 1SZ2 SER B -8 UNP P0A6V8 CLONING ARTIFACT SEQADV 1SZ2 SER B -7 UNP P0A6V8 CLONING ARTIFACT SEQADV 1SZ2 HIS B -6 UNP P0A6V8 EXPRESSION TAG SEQADV 1SZ2 HIS B -5 UNP P0A6V8 EXPRESSION TAG SEQADV 1SZ2 HIS B -4 UNP P0A6V8 EXPRESSION TAG SEQADV 1SZ2 HIS B -3 UNP P0A6V8 EXPRESSION TAG SEQADV 1SZ2 HIS B -2 UNP P0A6V8 EXPRESSION TAG SEQADV 1SZ2 HIS B -1 UNP P0A6V8 EXPRESSION TAG SEQADV 1SZ2 GLY B 0 UNP P0A6V8 CLONING ARTIFACT SEQADV 1SZ2 SER B 1 UNP P0A6V8 CLONING ARTIFACT SEQADV 1SZ2 MSE B 74 UNP P0A6V8 MET 74 MODIFIED RESIDUE SEQADV 1SZ2 MSE B 86 UNP P0A6V8 MET 86 MODIFIED RESIDUE SEQADV 1SZ2 MSE B 106 UNP P0A6V8 MET 106 MODIFIED RESIDUE SEQADV 1SZ2 MSE B 110 UNP P0A6V8 MET 110 MODIFIED RESIDUE SEQADV 1SZ2 MSE B 241 UNP P0A6V8 MET 241 MODIFIED RESIDUE SEQRES 1 A 332 MSE GLY SER SER HIS HIS HIS HIS HIS HIS GLY SER THR SEQRES 2 A 332 LYS TYR ALA LEU VAL GLY ASP VAL GLY GLY THR ASN ALA SEQRES 3 A 332 ARG LEU ALA LEU CYS ASP ILE ALA SER GLY GLU ILE SER SEQRES 4 A 332 GLN ALA LYS THR TYR SER GLY LEU ASP TYR PRO SER LEU SEQRES 5 A 332 GLU ALA VAL ILE ARG VAL TYR LEU GLU GLU HIS LYS VAL SEQRES 6 A 332 GLU VAL LYS ASP GLY CYS ILE ALA ILE ALA CYS PRO ILE SEQRES 7 A 332 THR GLY ASP TRP VAL ALA MSE THR ASN HIS THR TRP ALA SEQRES 8 A 332 PHE SER ILE ALA GLU MSE LYS LYS ASN LEU GLY PHE SER SEQRES 9 A 332 HIS LEU GLU ILE ILE ASN ASP PHE THR ALA VAL SER MSE SEQRES 10 A 332 ALA ILE PRO MSE LEU LYS LYS GLU HIS LEU ILE GLN PHE SEQRES 11 A 332 GLY GLY ALA GLU PRO VAL GLU GLY LYS PRO ILE ALA VAL SEQRES 12 A 332 TYR GLY ALA GLY THR GLY LEU GLY VAL ALA HIS LEU VAL SEQRES 13 A 332 HIS VAL ASP LYS ARG TRP VAL SER LEU PRO GLY GLU GLY SEQRES 14 A 332 GLY HIS VAL ASP PHE ALA PRO ASN SER GLU GLU GLU ALA SEQRES 15 A 332 ILE ILE LEU GLU ILE LEU ARG ALA GLU ILE GLY HIS VAL SEQRES 16 A 332 SER ALA GLU ARG VAL LEU SER GLY PRO GLY LEU VAL ASN SEQRES 17 A 332 LEU TYR ARG ALA ILE VAL LYS ALA ASP ASN ARG LEU PRO SEQRES 18 A 332 GLU ASN LEU LYS PRO LYS ASP ILE THR GLU ARG ALA LEU SEQRES 19 A 332 ALA ASP SER CYS THR ASP CYS ARG ARG ALA LEU SER LEU SEQRES 20 A 332 PHE CYS VAL ILE MSE GLY ARG PHE GLY GLY ASN LEU ALA SEQRES 21 A 332 LEU ASN LEU GLY THR PHE GLY GLY VAL PHE ILE ALA GLY SEQRES 22 A 332 GLY ILE VAL PRO ARG PHE LEU GLU PHE PHE LYS ALA SER SEQRES 23 A 332 GLY PHE ARG ALA ALA PHE GLU ASP LYS GLY ARG PHE LYS SEQRES 24 A 332 GLU TYR VAL HIS ASP ILE PRO VAL TYR LEU ILE VAL HIS SEQRES 25 A 332 ASP ASN PRO GLY LEU LEU GLY SER GLY ALA HIS LEU ARG SEQRES 26 A 332 GLN THR LEU GLY HIS ILE LEU SEQRES 1 B 332 MSE GLY SER SER HIS HIS HIS HIS HIS HIS GLY SER THR SEQRES 2 B 332 LYS TYR ALA LEU VAL GLY ASP VAL GLY GLY THR ASN ALA SEQRES 3 B 332 ARG LEU ALA LEU CYS ASP ILE ALA SER GLY GLU ILE SER SEQRES 4 B 332 GLN ALA LYS THR TYR SER GLY LEU ASP TYR PRO SER LEU SEQRES 5 B 332 GLU ALA VAL ILE ARG VAL TYR LEU GLU GLU HIS LYS VAL SEQRES 6 B 332 GLU VAL LYS ASP GLY CYS ILE ALA ILE ALA CYS PRO ILE SEQRES 7 B 332 THR GLY ASP TRP VAL ALA MSE THR ASN HIS THR TRP ALA SEQRES 8 B 332 PHE SER ILE ALA GLU MSE LYS LYS ASN LEU GLY PHE SER SEQRES 9 B 332 HIS LEU GLU ILE ILE ASN ASP PHE THR ALA VAL SER MSE SEQRES 10 B 332 ALA ILE PRO MSE LEU LYS LYS GLU HIS LEU ILE GLN PHE SEQRES 11 B 332 GLY GLY ALA GLU PRO VAL GLU GLY LYS PRO ILE ALA VAL SEQRES 12 B 332 TYR GLY ALA GLY THR GLY LEU GLY VAL ALA HIS LEU VAL SEQRES 13 B 332 HIS VAL ASP LYS ARG TRP VAL SER LEU PRO GLY GLU GLY SEQRES 14 B 332 GLY HIS VAL ASP PHE ALA PRO ASN SER GLU GLU GLU ALA SEQRES 15 B 332 ILE ILE LEU GLU ILE LEU ARG ALA GLU ILE GLY HIS VAL SEQRES 16 B 332 SER ALA GLU ARG VAL LEU SER GLY PRO GLY LEU VAL ASN SEQRES 17 B 332 LEU TYR ARG ALA ILE VAL LYS ALA ASP ASN ARG LEU PRO SEQRES 18 B 332 GLU ASN LEU LYS PRO LYS ASP ILE THR GLU ARG ALA LEU SEQRES 19 B 332 ALA ASP SER CYS THR ASP CYS ARG ARG ALA LEU SER LEU SEQRES 20 B 332 PHE CYS VAL ILE MSE GLY ARG PHE GLY GLY ASN LEU ALA SEQRES 21 B 332 LEU ASN LEU GLY THR PHE GLY GLY VAL PHE ILE ALA GLY SEQRES 22 B 332 GLY ILE VAL PRO ARG PHE LEU GLU PHE PHE LYS ALA SER SEQRES 23 B 332 GLY PHE ARG ALA ALA PHE GLU ASP LYS GLY ARG PHE LYS SEQRES 24 B 332 GLU TYR VAL HIS ASP ILE PRO VAL TYR LEU ILE VAL HIS SEQRES 25 B 332 ASP ASN PRO GLY LEU LEU GLY SER GLY ALA HIS LEU ARG SEQRES 26 B 332 GLN THR LEU GLY HIS ILE LEU MODRES 1SZ2 MSE A 74 MET SELENOMETHIONINE MODRES 1SZ2 MSE A 86 MET SELENOMETHIONINE MODRES 1SZ2 MSE A 106 MET SELENOMETHIONINE MODRES 1SZ2 MSE A 110 MET SELENOMETHIONINE MODRES 1SZ2 MSE A 241 MET SELENOMETHIONINE MODRES 1SZ2 MSE B 74 MET SELENOMETHIONINE MODRES 1SZ2 MSE B 86 MET SELENOMETHIONINE MODRES 1SZ2 MSE B 106 MET SELENOMETHIONINE MODRES 1SZ2 MSE B 110 MET SELENOMETHIONINE MODRES 1SZ2 MSE B 241 MET SELENOMETHIONINE HET MSE A 74 12 HET MSE A 86 8 HET MSE A 106 8 HET MSE A 110 8 HET MSE A 241 12 HET MSE B 74 8 HET MSE B 86 8 HET MSE B 106 8 HET MSE B 110 8 HET MSE B 241 12 HET BGC A1001 12 HET BGC B2001 12 HETNAM MSE SELENOMETHIONINE HETNAM BGC BETA-D-GLUCOPYRANOSE HETSYN BGC BETA-D-GLUCOSE; D-GLUCOSE; GLUCOSE FORMUL 1 MSE 10(C5 H11 N O2 SE) FORMUL 3 BGC 2(C6 H12 O6) FORMUL 5 HOH *348(H2 O) HELIX 1 1 LEU A 36 TYR A 38 5 3 HELIX 2 2 SER A 40 HIS A 52 1 13 HELIX 3 3 ILE A 83 GLY A 91 1 9 HELIX 4 4 ASP A 100 ILE A 108 1 9 HELIX 5 5 PRO A 109 LEU A 111 5 3 HELIX 6 6 LYS A 112 GLU A 114 5 3 HELIX 7 7 GLU A 157 VAL A 161 5 5 HELIX 8 8 SER A 167 ILE A 181 1 15 HELIX 9 9 SER A 185 VAL A 189 5 5 HELIX 10 10 SER A 191 ASP A 206 1 16 HELIX 11 11 LYS A 214 ASP A 225 1 12 HELIX 12 12 CYS A 227 GLY A 253 1 27 HELIX 13 13 VAL A 265 ARG A 267 5 3 HELIX 14 14 PHE A 268 SER A 275 1 8 HELIX 15 15 GLY A 276 ASP A 283 1 8 HELIX 16 16 LYS A 284 ARG A 286 5 3 HELIX 17 17 PHE A 287 HIS A 292 1 6 HELIX 18 18 ASN A 303 LEU A 317 1 15 HELIX 19 19 LEU B 36 TYR B 38 5 3 HELIX 20 20 SER B 40 HIS B 52 1 13 HELIX 21 21 ILE B 83 GLY B 91 1 9 HELIX 22 22 ASP B 100 ILE B 108 1 9 HELIX 23 23 PRO B 109 LEU B 111 5 3 HELIX 24 24 LYS B 112 GLU B 114 5 3 HELIX 25 25 GLU B 157 VAL B 161 5 5 HELIX 26 26 SER B 167 ILE B 181 1 15 HELIX 27 27 SER B 185 VAL B 189 5 5 HELIX 28 28 SER B 191 ASP B 206 1 16 HELIX 29 29 LYS B 214 ASP B 225 1 12 HELIX 30 30 CYS B 227 GLY B 253 1 27 HELIX 31 31 ILE B 264 ARG B 267 5 4 HELIX 32 32 PHE B 268 ALA B 274 1 7 HELIX 33 33 GLY B 276 GLU B 282 1 7 HELIX 34 34 LYS B 284 ARG B 286 5 3 HELIX 35 35 PHE B 287 ASP B 293 1 7 HELIX 36 36 ASN B 303 GLY B 318 1 16 SHEET 1 A 5 ILE A 27 SER A 34 0 SHEET 2 A 5 ASN A 14 ASP A 21 -1 N LEU A 17 O LYS A 31 SHEET 3 A 5 TYR A 4 GLY A 11 -1 N ALA A 5 O CYS A 20 SHEET 4 A 5 ASP A 58 ILE A 63 1 O ALA A 62 N VAL A 10 SHEET 5 A 5 HIS A 94 ASN A 99 1 O ILE A 98 N ILE A 63 SHEET 1 B 2 TRP A 71 VAL A 72 0 SHEET 2 B 2 PHE A 81 SER A 82 -1 O PHE A 81 N VAL A 72 SHEET 1 C 6 LEU A 116 GLN A 118 0 SHEET 2 C 6 VAL A 296 ILE A 299 -1 O LEU A 298 N ILE A 117 SHEET 3 C 6 GLY A 257 ALA A 261 1 N ILE A 260 O ILE A 299 SHEET 4 C 6 ILE A 130 ALA A 135 1 N ALA A 131 O PHE A 259 SHEET 5 C 6 LEU A 139 VAL A 147 -1 O LEU A 144 N ILE A 130 SHEET 6 C 6 ARG A 150 PRO A 155 -1 O VAL A 152 N VAL A 145 SHEET 1 D 5 ILE B 27 SER B 34 0 SHEET 2 D 5 ASN B 14 ASP B 21 -1 N LEU B 19 O SER B 28 SHEET 3 D 5 TYR B 4 GLY B 11 -1 N ALA B 5 O CYS B 20 SHEET 4 D 5 ASP B 58 ILE B 63 1 O ALA B 62 N VAL B 10 SHEET 5 D 5 HIS B 94 ASN B 99 1 O ILE B 98 N ILE B 63 SHEET 1 E 2 TRP B 71 ALA B 73 0 SHEET 2 E 2 ALA B 80 SER B 82 -1 O PHE B 81 N VAL B 72 SHEET 1 F 6 LEU B 116 GLN B 118 0 SHEET 2 F 6 VAL B 296 ILE B 299 -1 O LEU B 298 N ILE B 117 SHEET 3 F 6 GLY B 257 ALA B 261 1 N ILE B 260 O ILE B 299 SHEET 4 F 6 ILE B 130 ALA B 135 1 N ALA B 131 O PHE B 259 SHEET 5 F 6 LEU B 139 VAL B 147 -1 O LEU B 144 N ILE B 130 SHEET 6 F 6 ARG B 150 PRO B 155 -1 O LEU B 154 N HIS B 143 LINK C ALA A 73 N MSE A 74 1555 1555 1.31 LINK C MSE A 74 N THR A 75 1555 1555 1.34 LINK C GLU A 85 N MSE A 86 1555 1555 1.34 LINK C MSE A 86 N LYS A 87 1555 1555 1.33 LINK C SER A 105 N MSE A 106 1555 1555 1.34 LINK C MSE A 106 N ALA A 107 1555 1555 1.33 LINK C PRO A 109 N MSE A 110 1555 1555 1.34 LINK C MSE A 110 N LEU A 111 1555 1555 1.32 LINK C ILE A 240 N MSE A 241 1555 1555 1.33 LINK C MSE A 241 N GLY A 242 1555 1555 1.34 LINK C ALA B 73 N MSE B 74 1555 1555 1.33 LINK C MSE B 74 N THR B 75 1555 1555 1.34 LINK C GLU B 85 N MSE B 86 1555 1555 1.34 LINK C MSE B 86 N LYS B 87 1555 1555 1.33 LINK C SER B 105 N MSE B 106 1555 1555 1.33 LINK C MSE B 106 N ALA B 107 1555 1555 1.33 LINK C PRO B 109 N MSE B 110 1555 1555 1.33 LINK C MSE B 110 N LEU B 111 1555 1555 1.33 LINK C ILE B 240 N MSE B 241 1555 1555 1.33 LINK C MSE B 241 N GLY B 242 1555 1555 1.34 CISPEP 1 THR A 78 TRP A 79 0 6.39 CRYST1 78.416 53.538 90.903 90.00 112.99 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012752 0.000000 0.005409 0.00000 SCALE2 0.000000 0.018678 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011949 0.00000