data_1T0D # _entry.id 1T0D # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.389 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1T0D pdb_00001t0d 10.2210/pdb1t0d/pdb NDB UR0037 ? ? RCSB RCSB022154 ? ? WWPDB D_1000022154 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2004-06-15 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2024-02-14 5 'Structure model' 1 4 2024-04-03 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 5 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' struct_conn 5 5 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1T0D _pdbx_database_status.recvd_initial_deposition_date 2004-04-08 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 1T0E _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Shandrick, S.' 1 'Zhao, Q.' 2 'Han, Q.' 3 'Ayida, B.K.' 4 'Takahashi, M.' 5 'Winters, G.C.' 6 'Simonsen, K.B.' 7 'Vourloumis, D.' 8 'Hermann, T.' 9 # _citation.id primary _citation.title 'Monitoring molecular recognition of the ribosomal decoding site.' _citation.journal_abbrev Angew.Chem.Int.Ed.Engl. _citation.journal_volume 43 _citation.page_first 3177 _citation.page_last 3182 _citation.year 2004 _citation.journal_id_ASTM ACIEAY _citation.country GE _citation.journal_id_ISSN 0570-0833 _citation.journal_id_CSD 0179 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 15199571 _citation.pdbx_database_id_DOI 10.1002/anie.200454217 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Shandrick, S.' 1 ? primary 'Zhao, Q.' 2 ? primary 'Han, Q.' 3 ? primary 'Ayida, B.K.' 4 ? primary 'Takahashi, M.' 5 ? primary 'Winters, G.C.' 6 ? primary 'Simonsen, K.B.' 7 ? primary 'Vourloumis, D.' 8 ? primary 'Hermann, T.' 9 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "5'-R(*GP*GP*UP*GP*GP*UP*GP*(MTU)P*AP*GP*UP*CP*GP*CP*UP*GP*G)-3'" 5555.333 2 ? ? ? ? 2 polymer syn "5'-R(*CP*AP*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*AP*CP*CP*C)-3'" 5015.079 2 ? ? ? ? 3 water nat water 18.015 215 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polyribonucleotide no yes 'GGUGGUG(MTU)AGUCGCUGG' GGUGGUGAAGUCGCUGG A,C ? 2 polyribonucleotide no no CAGCGUCACACCACCC CAGCGUCACACCACCC B,D ? # _pdbx_entity_nonpoly.entity_id 3 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 G n 1 3 U n 1 4 G n 1 5 G n 1 6 U n 1 7 G n 1 8 MTU n 1 9 A n 1 10 G n 1 11 U n 1 12 C n 1 13 G n 1 14 C n 1 15 U n 1 16 G n 1 17 G n 2 1 C n 2 2 A n 2 3 G n 2 4 C n 2 5 G n 2 6 U n 2 7 C n 2 8 A n 2 9 C n 2 10 A n 2 11 C n 2 12 C n 2 13 A n 2 14 C n 2 15 C n 2 16 C n # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 HOH non-polymer . WATER ? 'H2 O' 18.015 MTU 'RNA linking' n 9-BETA-D-RIBOFURANOSYL-9H-PURIN-2-AMINE ? 'C10 H14 N5 O7 P' 347.221 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 1 1 G G A . n A 1 2 G 2 2 2 G G A . n A 1 3 U 3 3 3 U U A . n A 1 4 G 4 4 4 G G A . n A 1 5 G 5 5 5 G G A . n A 1 6 U 6 6 6 U U A . n A 1 7 G 7 7 7 G G A . n A 1 8 MTU 8 8 8 MTU +A A . n A 1 9 A 9 9 9 A A A . n A 1 10 G 10 10 10 G G A . n A 1 11 U 11 11 11 U U A . n A 1 12 C 12 12 12 C C A . n A 1 13 G 13 13 13 G G A . n A 1 14 C 14 14 14 C C A . n A 1 15 U 15 15 15 U U A . n A 1 16 G 16 16 16 G G A . n A 1 17 G 17 17 17 G G A . n B 2 1 C 1 20 20 C C B . n B 2 2 A 2 21 21 A A B . n B 2 3 G 3 22 22 G G B . n B 2 4 C 4 23 23 C C B . n B 2 5 G 5 24 24 G G B . n B 2 6 U 6 25 25 U U B . n B 2 7 C 7 26 26 C C B . n B 2 8 A 8 27 27 A A B . n B 2 9 C 9 28 28 C C B . n B 2 10 A 10 29 29 A A B . n B 2 11 C 11 30 30 C C B . n B 2 12 C 12 31 31 C C B . n B 2 13 A 13 32 32 A A B . n B 2 14 C 14 33 33 C C B . n B 2 15 C 15 34 34 C C B . n B 2 16 C 16 35 35 C C B . n C 1 1 G 1 1 1 G G C . n C 1 2 G 2 2 2 G G C . n C 1 3 U 3 3 3 U U C . n C 1 4 G 4 4 4 G G C . n C 1 5 G 5 5 5 G G C . n C 1 6 U 6 6 6 U U C . n C 1 7 G 7 7 7 G G C . n C 1 8 MTU 8 8 8 MTU +A C . n C 1 9 A 9 9 9 A A C . n C 1 10 G 10 10 10 G G C . n C 1 11 U 11 11 11 U U C . n C 1 12 C 12 12 12 C C C . n C 1 13 G 13 13 13 G G C . n C 1 14 C 14 14 14 C C C . n C 1 15 U 15 15 15 U U C . n C 1 16 G 16 16 16 G G C . n C 1 17 G 17 17 17 G G C . n D 2 1 C 1 20 20 C C D . n D 2 2 A 2 21 21 A A D . n D 2 3 G 3 22 22 G G D . n D 2 4 C 4 23 23 C C D . n D 2 5 G 5 24 24 G G D . n D 2 6 U 6 25 25 U U D . n D 2 7 C 7 26 26 C C D . n D 2 8 A 8 27 27 A A D . n D 2 9 C 9 28 28 C C D . n D 2 10 A 10 29 29 A A D . n D 2 11 C 11 30 30 C C D . n D 2 12 C 12 31 31 C C D . n D 2 13 A 13 32 32 A A D . n D 2 14 C 14 33 33 C C D . n D 2 15 C 15 34 34 C C D . n D 2 16 C 16 35 35 C C D . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 HOH 1 18 2 HOH TIP A . E 3 HOH 2 19 10 HOH TIP A . E 3 HOH 3 20 16 HOH TIP A . E 3 HOH 4 21 17 HOH TIP A . E 3 HOH 5 22 19 HOH TIP A . E 3 HOH 6 23 27 HOH TIP A . E 3 HOH 7 24 35 HOH TIP A . E 3 HOH 8 25 36 HOH TIP A . E 3 HOH 9 26 38 HOH TIP A . E 3 HOH 10 27 48 HOH TIP A . E 3 HOH 11 28 60 HOH TIP A . E 3 HOH 12 29 63 HOH TIP A . E 3 HOH 13 30 79 HOH TIP A . E 3 HOH 14 31 82 HOH TIP A . E 3 HOH 15 32 86 HOH TIP A . E 3 HOH 16 33 93 HOH TIP A . E 3 HOH 17 34 98 HOH TIP A . E 3 HOH 18 35 99 HOH TIP A . E 3 HOH 19 36 103 HOH TIP A . E 3 HOH 20 37 104 HOH TIP A . E 3 HOH 21 38 106 HOH TIP A . E 3 HOH 22 39 114 HOH TIP A . E 3 HOH 23 40 117 HOH TIP A . E 3 HOH 24 41 119 HOH TIP A . E 3 HOH 25 42 120 HOH TIP A . E 3 HOH 26 43 131 HOH TIP A . E 3 HOH 27 44 136 HOH TIP A . E 3 HOH 28 45 139 HOH TIP A . E 3 HOH 29 46 147 HOH TIP A . E 3 HOH 30 47 148 HOH TIP A . E 3 HOH 31 48 152 HOH TIP A . E 3 HOH 32 49 154 HOH TIP A . E 3 HOH 33 50 156 HOH TIP A . E 3 HOH 34 51 157 HOH TIP A . E 3 HOH 35 52 163 HOH TIP A . E 3 HOH 36 53 170 HOH TIP A . E 3 HOH 37 54 174 HOH TIP A . E 3 HOH 38 55 179 HOH TIP A . E 3 HOH 39 56 181 HOH TIP A . E 3 HOH 40 57 186 HOH TIP A . E 3 HOH 41 58 188 HOH TIP A . E 3 HOH 42 59 190 HOH TIP A . E 3 HOH 43 60 191 HOH TIP A . E 3 HOH 44 61 197 HOH TIP A . E 3 HOH 45 62 205 HOH TIP A . E 3 HOH 46 63 211 HOH TIP A . E 3 HOH 47 64 217 HOH TIP A . E 3 HOH 48 65 224 HOH TIP A . E 3 HOH 49 66 232 HOH TIP A . E 3 HOH 50 67 237 HOH TIP A . E 3 HOH 51 68 238 HOH TIP A . E 3 HOH 52 69 246 HOH TIP A . E 3 HOH 53 70 254 HOH TIP A . E 3 HOH 54 71 261 HOH TIP A . E 3 HOH 55 72 262 HOH TIP A . E 3 HOH 56 73 263 HOH TIP A . E 3 HOH 57 74 271 HOH TIP A . E 3 HOH 58 75 273 HOH TIP A . E 3 HOH 59 76 279 HOH TIP A . F 3 HOH 1 36 5 HOH TIP B . F 3 HOH 2 37 7 HOH TIP B . F 3 HOH 3 38 9 HOH TIP B . F 3 HOH 4 39 15 HOH TIP B . F 3 HOH 5 40 21 HOH TIP B . F 3 HOH 6 41 26 HOH TIP B . F 3 HOH 7 42 33 HOH TIP B . F 3 HOH 8 43 37 HOH TIP B . F 3 HOH 9 44 39 HOH TIP B . F 3 HOH 10 45 40 HOH TIP B . F 3 HOH 11 46 43 HOH TIP B . F 3 HOH 12 47 44 HOH TIP B . F 3 HOH 13 48 45 HOH TIP B . F 3 HOH 14 49 52 HOH TIP B . F 3 HOH 15 50 54 HOH TIP B . F 3 HOH 16 51 68 HOH TIP B . F 3 HOH 17 52 70 HOH TIP B . F 3 HOH 18 53 81 HOH TIP B . F 3 HOH 19 54 83 HOH TIP B . F 3 HOH 20 55 84 HOH TIP B . F 3 HOH 21 56 101 HOH TIP B . F 3 HOH 22 57 110 HOH TIP B . F 3 HOH 23 58 113 HOH TIP B . F 3 HOH 24 59 124 HOH TIP B . F 3 HOH 25 60 133 HOH TIP B . F 3 HOH 26 61 140 HOH TIP B . F 3 HOH 27 62 143 HOH TIP B . F 3 HOH 28 63 144 HOH TIP B . F 3 HOH 29 64 171 HOH TIP B . F 3 HOH 30 65 172 HOH TIP B . F 3 HOH 31 66 177 HOH TIP B . F 3 HOH 32 67 182 HOH TIP B . F 3 HOH 33 68 187 HOH TIP B . F 3 HOH 34 69 189 HOH TIP B . F 3 HOH 35 70 192 HOH TIP B . F 3 HOH 36 71 208 HOH TIP B . F 3 HOH 37 72 215 HOH TIP B . F 3 HOH 38 73 216 HOH TIP B . F 3 HOH 39 74 227 HOH TIP B . F 3 HOH 40 75 236 HOH TIP B . F 3 HOH 41 76 244 HOH TIP B . F 3 HOH 42 77 250 HOH TIP B . F 3 HOH 43 78 264 HOH TIP B . F 3 HOH 44 79 272 HOH TIP B . F 3 HOH 45 80 275 HOH TIP B . F 3 HOH 46 81 288 HOH TIP B . G 3 HOH 1 18 8 HOH TIP C . G 3 HOH 2 19 20 HOH TIP C . G 3 HOH 3 20 22 HOH TIP C . G 3 HOH 4 21 25 HOH TIP C . G 3 HOH 5 22 28 HOH TIP C . G 3 HOH 6 23 34 HOH TIP C . G 3 HOH 7 24 49 HOH TIP C . G 3 HOH 8 25 53 HOH TIP C . G 3 HOH 9 26 55 HOH TIP C . G 3 HOH 10 27 56 HOH TIP C . G 3 HOH 11 28 59 HOH TIP C . G 3 HOH 12 29 72 HOH TIP C . G 3 HOH 13 30 75 HOH TIP C . G 3 HOH 14 31 80 HOH TIP C . G 3 HOH 15 32 87 HOH TIP C . G 3 HOH 16 33 89 HOH TIP C . G 3 HOH 17 34 94 HOH TIP C . G 3 HOH 18 35 109 HOH TIP C . G 3 HOH 19 36 112 HOH TIP C . G 3 HOH 20 37 115 HOH TIP C . G 3 HOH 21 38 126 HOH TIP C . G 3 HOH 22 39 127 HOH TIP C . G 3 HOH 23 40 132 HOH TIP C . G 3 HOH 24 41 134 HOH TIP C . G 3 HOH 25 42 142 HOH TIP C . G 3 HOH 26 43 151 HOH TIP C . G 3 HOH 27 44 155 HOH TIP C . G 3 HOH 28 45 158 HOH TIP C . G 3 HOH 29 46 160 HOH TIP C . G 3 HOH 30 47 162 HOH TIP C . G 3 HOH 31 48 165 HOH TIP C . G 3 HOH 32 49 175 HOH TIP C . G 3 HOH 33 50 183 HOH TIP C . G 3 HOH 34 51 184 HOH TIP C . G 3 HOH 35 52 185 HOH TIP C . G 3 HOH 36 53 198 HOH TIP C . G 3 HOH 37 54 199 HOH TIP C . G 3 HOH 38 55 203 HOH TIP C . G 3 HOH 39 56 209 HOH TIP C . G 3 HOH 40 57 212 HOH TIP C . G 3 HOH 41 58 213 HOH TIP C . G 3 HOH 42 59 214 HOH TIP C . G 3 HOH 43 60 221 HOH TIP C . G 3 HOH 44 61 223 HOH TIP C . G 3 HOH 45 62 225 HOH TIP C . G 3 HOH 46 63 228 HOH TIP C . G 3 HOH 47 64 231 HOH TIP C . G 3 HOH 48 65 241 HOH TIP C . G 3 HOH 49 66 245 HOH TIP C . G 3 HOH 50 67 251 HOH TIP C . G 3 HOH 51 68 253 HOH TIP C . G 3 HOH 52 69 268 HOH TIP C . G 3 HOH 53 70 274 HOH TIP C . G 3 HOH 54 71 278 HOH TIP C . G 3 HOH 55 72 280 HOH TIP C . G 3 HOH 56 73 283 HOH TIP C . H 3 HOH 1 36 23 HOH TIP D . H 3 HOH 2 37 29 HOH TIP D . H 3 HOH 3 38 42 HOH TIP D . H 3 HOH 4 39 47 HOH TIP D . H 3 HOH 5 40 58 HOH TIP D . H 3 HOH 6 41 61 HOH TIP D . H 3 HOH 7 42 62 HOH TIP D . H 3 HOH 8 43 64 HOH TIP D . H 3 HOH 9 44 66 HOH TIP D . H 3 HOH 10 45 69 HOH TIP D . H 3 HOH 11 46 74 HOH TIP D . H 3 HOH 12 47 77 HOH TIP D . H 3 HOH 13 48 78 HOH TIP D . H 3 HOH 14 49 85 HOH TIP D . H 3 HOH 15 50 91 HOH TIP D . H 3 HOH 16 51 92 HOH TIP D . H 3 HOH 17 52 96 HOH TIP D . H 3 HOH 18 53 97 HOH TIP D . H 3 HOH 19 54 129 HOH TIP D . H 3 HOH 20 55 130 HOH TIP D . H 3 HOH 21 56 137 HOH TIP D . H 3 HOH 22 57 138 HOH TIP D . H 3 HOH 23 58 150 HOH TIP D . H 3 HOH 24 59 153 HOH TIP D . H 3 HOH 25 60 159 HOH TIP D . H 3 HOH 26 61 161 HOH TIP D . H 3 HOH 27 62 166 HOH TIP D . H 3 HOH 28 63 169 HOH TIP D . H 3 HOH 29 64 176 HOH TIP D . H 3 HOH 30 65 178 HOH TIP D . H 3 HOH 31 66 195 HOH TIP D . H 3 HOH 32 67 201 HOH TIP D . H 3 HOH 33 68 202 HOH TIP D . H 3 HOH 34 69 204 HOH TIP D . H 3 HOH 35 70 206 HOH TIP D . H 3 HOH 36 71 207 HOH TIP D . H 3 HOH 37 72 210 HOH TIP D . H 3 HOH 38 73 218 HOH TIP D . H 3 HOH 39 74 219 HOH TIP D . H 3 HOH 40 75 220 HOH TIP D . H 3 HOH 41 76 226 HOH TIP D . H 3 HOH 42 77 229 HOH TIP D . H 3 HOH 43 78 242 HOH TIP D . H 3 HOH 44 79 247 HOH TIP D . H 3 HOH 45 80 248 HOH TIP D . H 3 HOH 46 81 252 HOH TIP D . H 3 HOH 47 82 259 HOH TIP D . H 3 HOH 48 83 260 HOH TIP D . H 3 HOH 49 84 266 HOH TIP D . H 3 HOH 50 85 270 HOH TIP D . H 3 HOH 51 86 276 HOH TIP D . H 3 HOH 52 87 282 HOH TIP D . H 3 HOH 53 88 285 HOH TIP D . H 3 HOH 54 89 289 HOH TIP D . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal DENZO 'data reduction' . ? 1 SCALEPACK 'data scaling' . ? 2 AMoRE phasing . ? 3 CNS refinement . ? 4 # _cell.entry_id 1T0D _cell.length_a 31.640 _cell.length_b 87.320 _cell.length_c 32.790 _cell.angle_alpha 90.00 _cell.angle_beta 93.27 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1T0D _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 # _exptl.entry_id 1T0D _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 40.5 _exptl_crystal.description ? _exptl_crystal.density_Matthews 2.1 # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293.15 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.8 _exptl_crystal_grow.pdbx_details 'Ammonium sulfate, magnesium acetate, cacodylate, pH 6.8, VAPOR DIFFUSION, HANGING DROP, temperature 293.15K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 103.0 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'RIGAKU RAXIS IV' _diffrn_detector.pdbx_collection_date 2003-06-14 _diffrn_detector.details mirrors # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Ni FILTER' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type RIGAKU _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.5418 # _reflns.entry_id 1T0D _reflns.observed_criterion_sigma_F 3 _reflns.observed_criterion_sigma_I 3 _reflns.d_resolution_high 2.2 _reflns.d_resolution_low 30.0 _reflns.number_all 8984 _reflns.number_obs 8903 _reflns.percent_possible_obs 99.1 _reflns.pdbx_Rmerge_I_obs 0.09 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 15.3 _reflns.B_iso_Wilson_estimate 19.7 _reflns.pdbx_redundancy 8.6 _reflns.R_free_details ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.2 _reflns_shell.d_res_low 2.28 _reflns_shell.percent_possible_all 96.1 _reflns_shell.Rmerge_I_obs 0.311 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 3.3 _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 844 _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 1T0D _refine.ls_d_res_high 2.2 _refine.ls_d_res_low 8 _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_ls_sigma_I 0.0 _refine.ls_number_reflns_all 8867 _refine.ls_number_reflns_obs 8285 _refine.ls_number_reflns_R_free 870 _refine.ls_percent_reflns_obs 93.4 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_R_work 0.205 _refine.ls_R_factor_R_free 0.266 _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 'a model of RNA' _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model anisotropic _refine.B_iso_mean 25.8 _refine.aniso_B[1][1] -3.96 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] 0.408 _refine.aniso_B[2][2] 5.144 _refine.aniso_B[2][3] 0.00 _refine.aniso_B[3][3] -1.183 _refine.details ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_SU_B ? _refine.overall_SU_ML ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 1T0D _refine_analyze.Luzzati_coordinate_error_obs 0.27 _refine_analyze.Luzzati_sigma_a_obs 0.30 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.37 _refine_analyze.Luzzati_sigma_a_free 0.42 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 1398 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 215 _refine_hist.number_atoms_total 1613 _refine_hist.d_res_high 2.2 _refine_hist.d_res_low 8 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.004 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d 0.93 ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used ? _refine_ls_shell.d_res_high 2.2 _refine_ls_shell.d_res_low 2.34 _refine_ls_shell.number_reflns_R_work ? _refine_ls_shell.R_factor_R_work 0.308 _refine_ls_shell.percent_reflns_obs 82.4 _refine_ls_shell.R_factor_R_free 0.354 _refine_ls_shell.R_factor_R_free_error 0.031 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 129 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # _database_PDB_matrix.entry_id 1T0D _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1T0D _struct.title 'Crystal Structure of 2-aminopurine labelled bacterial decoding site RNA' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1T0D _struct_keywords.pdbx_keywords RNA _struct_keywords.text '2-AMINOPURINE, BACTERIAL DECODING SITE RNA, FLUORESCENCE EMISSION SPECTRA, 9-beta-D-Ribofuranosyl-9H-purin-2-amine, RNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 1 ? D N N 2 ? E N N 3 ? F N N 3 ? G N N 3 ? H N N 3 ? # loop_ _struct_ref.id _struct_ref.entity_id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 1 PDB 1T0D 1T0D ? ? ? 2 2 PDB 1T0D 1T0D ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1T0D A 1 ? 17 ? 1T0D 1 ? 17 ? 1 17 2 2 1T0D B 1 ? 16 ? 1T0D 20 ? 35 ? 20 35 3 1 1T0D C 1 ? 17 ? 1T0D 1 ? 17 ? 1 17 4 2 1T0D D 1 ? 16 ? 1T0D 20 ? 35 ? 20 35 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? dimeric 2 2 author_defined_assembly ? dimeric 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,E,F 2 1 C,D,G,H # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_biol.id _struct_biol.pdbx_parent_biol_id _struct_biol.details 1 ? ? 2 ? ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale one ? A G 7 "O3'" ? ? ? 1_555 A MTU 8 P ? ? A G 7 A MTU 8 1_555 ? ? ? ? ? ? ? 1.608 ? ? covale2 covale both ? A MTU 8 "O3'" ? ? ? 1_555 A A 9 P ? ? A MTU 8 A A 9 1_555 ? ? ? ? ? ? ? 1.603 ? ? covale3 covale one ? C G 7 "O3'" ? ? ? 1_555 C MTU 8 P ? ? C G 7 C MTU 8 1_555 ? ? ? ? ? ? ? 1.602 ? ? covale4 covale both ? C MTU 8 "O3'" ? ? ? 1_555 C A 9 P ? ? C MTU 8 C A 9 1_555 ? ? ? ? ? ? ? 1.598 ? ? hydrog1 hydrog ? ? A G 1 N1 ? ? ? 1_555 B C 15 N3 ? ? A G 1 B C 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A G 1 N2 ? ? ? 1_555 B C 15 O2 ? ? A G 1 B C 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 1 O6 ? ? ? 1_555 B C 15 N4 ? ? A G 1 B C 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A G 2 N1 ? ? ? 1_555 B C 14 N3 ? ? A G 2 B C 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A G 2 N2 ? ? ? 1_555 B C 14 O2 ? ? A G 2 B C 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A G 2 O6 ? ? ? 1_555 B C 14 N4 ? ? A G 2 B C 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A U 3 N3 ? ? ? 1_555 B A 13 N1 ? ? A U 3 B A 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A U 3 O4 ? ? ? 1_555 B A 13 N6 ? ? A U 3 B A 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A G 4 N1 ? ? ? 1_555 B C 12 N3 ? ? A G 4 B C 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A G 4 N2 ? ? ? 1_555 B C 12 O2 ? ? A G 4 B C 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A G 4 O6 ? ? ? 1_555 B C 12 N4 ? ? A G 4 B C 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A G 5 N1 ? ? ? 1_555 B C 11 N3 ? ? A G 5 B C 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A G 5 N2 ? ? ? 1_555 B C 11 O2 ? ? A G 5 B C 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A G 5 O6 ? ? ? 1_555 B C 11 N4 ? ? A G 5 B C 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A U 6 N3 ? ? ? 1_555 B A 10 N1 ? ? A U 6 B A 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A U 6 O4 ? ? ? 1_555 B A 10 N6 ? ? A U 6 B A 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A G 7 N1 ? ? ? 1_555 B C 9 N3 ? ? A G 7 B C 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A G 7 N2 ? ? ? 1_555 B C 9 O2 ? ? A G 7 B C 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A G 7 O6 ? ? ? 1_555 B C 9 N4 ? ? A G 7 B C 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A MTU 8 N1 ? ? ? 1_555 B A 8 N6 ? ? A MTU 8 B A 27 1_555 ? ? ? ? ? ? 'MTU-A MISPAIR' ? ? ? hydrog21 hydrog ? ? A G 10 N1 ? ? ? 1_555 B C 7 N3 ? ? A G 10 B C 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A G 10 N2 ? ? ? 1_555 B C 7 O2 ? ? A G 10 B C 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A G 10 O6 ? ? ? 1_555 B C 7 N4 ? ? A G 10 B C 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A U 11 N3 ? ? ? 1_555 B U 6 O4 ? ? A U 11 B U 25 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog25 hydrog ? ? A U 11 O2 ? ? ? 1_555 B U 6 N3 ? ? A U 11 B U 25 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog26 hydrog ? ? A C 12 O2 ? ? ? 1_555 B G 5 N1 ? ? A C 12 B G 24 1_555 ? ? ? ? ? ? 'C-G PAIR' ? ? ? hydrog27 hydrog ? ? A G 13 N1 ? ? ? 1_555 B C 4 N3 ? ? A G 13 B C 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A G 13 N2 ? ? ? 1_555 B C 4 O2 ? ? A G 13 B C 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A G 13 O6 ? ? ? 1_555 B C 4 N4 ? ? A G 13 B C 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A C 14 N3 ? ? ? 1_555 B G 3 N1 ? ? A C 14 B G 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A C 14 N4 ? ? ? 1_555 B G 3 O6 ? ? A C 14 B G 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A C 14 O2 ? ? ? 1_555 B G 3 N2 ? ? A C 14 B G 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A U 15 N3 ? ? ? 1_555 B A 2 N1 ? ? A U 15 B A 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A U 15 O4 ? ? ? 1_555 B A 2 N6 ? ? A U 15 B A 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A G 16 N1 ? ? ? 1_555 B C 1 N3 ? ? A G 16 B C 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A G 16 N2 ? ? ? 1_555 B C 1 O2 ? ? A G 16 B C 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A G 16 O6 ? ? ? 1_555 B C 1 N4 ? ? A G 16 B C 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? C G 1 N1 ? ? ? 1_555 D C 15 N3 ? ? C G 1 D C 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? C G 1 N2 ? ? ? 1_555 D C 15 O2 ? ? C G 1 D C 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? C G 1 O6 ? ? ? 1_555 D C 15 N4 ? ? C G 1 D C 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? C G 2 N1 ? ? ? 1_555 D C 14 N3 ? ? C G 2 D C 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? C G 2 N2 ? ? ? 1_555 D C 14 O2 ? ? C G 2 D C 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? C G 2 O6 ? ? ? 1_555 D C 14 N4 ? ? C G 2 D C 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? C U 3 N3 ? ? ? 1_555 D A 13 N1 ? ? C U 3 D A 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? C U 3 O4 ? ? ? 1_555 D A 13 N6 ? ? C U 3 D A 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? C G 4 N1 ? ? ? 1_555 D C 12 N3 ? ? C G 4 D C 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? C G 4 N2 ? ? ? 1_555 D C 12 O2 ? ? C G 4 D C 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? C G 4 O6 ? ? ? 1_555 D C 12 N4 ? ? C G 4 D C 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? C G 5 N1 ? ? ? 1_555 D C 11 N3 ? ? C G 5 D C 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? C G 5 N2 ? ? ? 1_555 D C 11 O2 ? ? C G 5 D C 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? C G 5 O6 ? ? ? 1_555 D C 11 N4 ? ? C G 5 D C 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? C U 6 N3 ? ? ? 1_555 D A 10 N1 ? ? C U 6 D A 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? C U 6 O4 ? ? ? 1_555 D A 10 N6 ? ? C U 6 D A 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? C G 7 N1 ? ? ? 1_555 D C 9 N3 ? ? C G 7 D C 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? C G 7 N2 ? ? ? 1_555 D C 9 O2 ? ? C G 7 D C 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? C G 7 O6 ? ? ? 1_555 D C 9 N4 ? ? C G 7 D C 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog57 hydrog ? ? C G 10 N1 ? ? ? 1_555 D C 7 N3 ? ? C G 10 D C 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog58 hydrog ? ? C G 10 N2 ? ? ? 1_555 D C 7 O2 ? ? C G 10 D C 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? C G 10 O6 ? ? ? 1_555 D C 7 N4 ? ? C G 10 D C 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? C U 11 N3 ? ? ? 1_555 D U 6 O4 ? ? C U 11 D U 25 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog61 hydrog ? ? C U 11 O2 ? ? ? 1_555 D U 6 N3 ? ? C U 11 D U 25 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog62 hydrog ? ? C C 12 N3 ? ? ? 1_555 D G 5 N1 ? ? C C 12 D G 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog63 hydrog ? ? C C 12 N4 ? ? ? 1_555 D G 5 O6 ? ? C C 12 D G 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog64 hydrog ? ? C C 12 O2 ? ? ? 1_555 D G 5 N2 ? ? C C 12 D G 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog65 hydrog ? ? C G 13 N1 ? ? ? 1_555 D C 4 N3 ? ? C G 13 D C 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog66 hydrog ? ? C G 13 N2 ? ? ? 1_555 D C 4 O2 ? ? C G 13 D C 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog67 hydrog ? ? C G 13 O6 ? ? ? 1_555 D C 4 N4 ? ? C G 13 D C 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog68 hydrog ? ? C C 14 N3 ? ? ? 1_555 D G 3 N1 ? ? C C 14 D G 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog69 hydrog ? ? C C 14 N4 ? ? ? 1_555 D G 3 O6 ? ? C C 14 D G 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog70 hydrog ? ? C C 14 O2 ? ? ? 1_555 D G 3 N2 ? ? C C 14 D G 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog71 hydrog ? ? C U 15 N3 ? ? ? 1_555 D A 2 N1 ? ? C U 15 D A 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog72 hydrog ? ? C U 15 O4 ? ? ? 1_555 D A 2 N6 ? ? C U 15 D A 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog73 hydrog ? ? C G 16 N1 ? ? ? 1_555 D C 1 N3 ? ? C G 16 D C 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog74 hydrog ? ? C G 16 N2 ? ? ? 1_555 D C 1 O2 ? ? C G 16 D C 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog75 hydrog ? ? C G 16 O6 ? ? ? 1_555 D C 1 N4 ? ? C G 16 D C 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 O _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 HOH _pdbx_validate_close_contact.auth_seq_id_1 60 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 70 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 1.93 # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MTU 8 A MTU 8 ? A 9-BETA-D-RIBOFURANOSYL-9H-PURIN-2-AMINE 2 C MTU 8 C MTU 8 ? A 9-BETA-D-RIBOFURANOSYL-9H-PURIN-2-AMINE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 C OP3 O N N 38 C P P N N 39 C OP1 O N N 40 C OP2 O N N 41 C "O5'" O N N 42 C "C5'" C N N 43 C "C4'" C N R 44 C "O4'" O N N 45 C "C3'" C N S 46 C "O3'" O N N 47 C "C2'" C N R 48 C "O2'" O N N 49 C "C1'" C N R 50 C N1 N N N 51 C C2 C N N 52 C O2 O N N 53 C N3 N N N 54 C C4 C N N 55 C N4 N N N 56 C C5 C N N 57 C C6 C N N 58 C HOP3 H N N 59 C HOP2 H N N 60 C "H5'" H N N 61 C "H5''" H N N 62 C "H4'" H N N 63 C "H3'" H N N 64 C "HO3'" H N N 65 C "H2'" H N N 66 C "HO2'" H N N 67 C "H1'" H N N 68 C H41 H N N 69 C H42 H N N 70 C H5 H N N 71 C H6 H N N 72 G OP3 O N N 73 G P P N N 74 G OP1 O N N 75 G OP2 O N N 76 G "O5'" O N N 77 G "C5'" C N N 78 G "C4'" C N R 79 G "O4'" O N N 80 G "C3'" C N S 81 G "O3'" O N N 82 G "C2'" C N R 83 G "O2'" O N N 84 G "C1'" C N R 85 G N9 N Y N 86 G C8 C Y N 87 G N7 N Y N 88 G C5 C Y N 89 G C6 C N N 90 G O6 O N N 91 G N1 N N N 92 G C2 C N N 93 G N2 N N N 94 G N3 N N N 95 G C4 C Y N 96 G HOP3 H N N 97 G HOP2 H N N 98 G "H5'" H N N 99 G "H5''" H N N 100 G "H4'" H N N 101 G "H3'" H N N 102 G "HO3'" H N N 103 G "H2'" H N N 104 G "HO2'" H N N 105 G "H1'" H N N 106 G H8 H N N 107 G H1 H N N 108 G H21 H N N 109 G H22 H N N 110 HOH O O N N 111 HOH H1 H N N 112 HOH H2 H N N 113 MTU P P N N 114 MTU OP1 O N N 115 MTU OP2 O N N 116 MTU "O5'" O N N 117 MTU "C5'" C N N 118 MTU "C4'" C N R 119 MTU "O4'" O N N 120 MTU "C1'" C N R 121 MTU N9 N Y N 122 MTU C4 C Y N 123 MTU N3 N Y N 124 MTU C2 C Y N 125 MTU N2 N N N 126 MTU N1 N Y N 127 MTU C6 C Y N 128 MTU C5 C Y N 129 MTU N7 N Y N 130 MTU C8 C Y N 131 MTU "C2'" C N R 132 MTU "O2'" O N N 133 MTU "C3'" C N S 134 MTU "O3'" O N N 135 MTU O1 O N N 136 MTU HO2P H N N 137 MTU "H5'" H N N 138 MTU "H5''" H N N 139 MTU "H4'" H N N 140 MTU "H1'" H N N 141 MTU HN21 H N N 142 MTU HN22 H N N 143 MTU H6 H N N 144 MTU H8 H N N 145 MTU "H2'" H N N 146 MTU "HO2'" H N N 147 MTU "H3'" H N N 148 MTU "HO3'" H N N 149 MTU HO1 H N N 150 U OP3 O N N 151 U P P N N 152 U OP1 O N N 153 U OP2 O N N 154 U "O5'" O N N 155 U "C5'" C N N 156 U "C4'" C N R 157 U "O4'" O N N 158 U "C3'" C N S 159 U "O3'" O N N 160 U "C2'" C N R 161 U "O2'" O N N 162 U "C1'" C N R 163 U N1 N N N 164 U C2 C N N 165 U O2 O N N 166 U N3 N N N 167 U C4 C N N 168 U O4 O N N 169 U C5 C N N 170 U C6 C N N 171 U HOP3 H N N 172 U HOP2 H N N 173 U "H5'" H N N 174 U "H5''" H N N 175 U "H4'" H N N 176 U "H3'" H N N 177 U "HO3'" H N N 178 U "H2'" H N N 179 U "HO2'" H N N 180 U "H1'" H N N 181 U H3 H N N 182 U H5 H N N 183 U H6 H N N 184 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 C OP3 P sing N N 40 C OP3 HOP3 sing N N 41 C P OP1 doub N N 42 C P OP2 sing N N 43 C P "O5'" sing N N 44 C OP2 HOP2 sing N N 45 C "O5'" "C5'" sing N N 46 C "C5'" "C4'" sing N N 47 C "C5'" "H5'" sing N N 48 C "C5'" "H5''" sing N N 49 C "C4'" "O4'" sing N N 50 C "C4'" "C3'" sing N N 51 C "C4'" "H4'" sing N N 52 C "O4'" "C1'" sing N N 53 C "C3'" "O3'" sing N N 54 C "C3'" "C2'" sing N N 55 C "C3'" "H3'" sing N N 56 C "O3'" "HO3'" sing N N 57 C "C2'" "O2'" sing N N 58 C "C2'" "C1'" sing N N 59 C "C2'" "H2'" sing N N 60 C "O2'" "HO2'" sing N N 61 C "C1'" N1 sing N N 62 C "C1'" "H1'" sing N N 63 C N1 C2 sing N N 64 C N1 C6 sing N N 65 C C2 O2 doub N N 66 C C2 N3 sing N N 67 C N3 C4 doub N N 68 C C4 N4 sing N N 69 C C4 C5 sing N N 70 C N4 H41 sing N N 71 C N4 H42 sing N N 72 C C5 C6 doub N N 73 C C5 H5 sing N N 74 C C6 H6 sing N N 75 G OP3 P sing N N 76 G OP3 HOP3 sing N N 77 G P OP1 doub N N 78 G P OP2 sing N N 79 G P "O5'" sing N N 80 G OP2 HOP2 sing N N 81 G "O5'" "C5'" sing N N 82 G "C5'" "C4'" sing N N 83 G "C5'" "H5'" sing N N 84 G "C5'" "H5''" sing N N 85 G "C4'" "O4'" sing N N 86 G "C4'" "C3'" sing N N 87 G "C4'" "H4'" sing N N 88 G "O4'" "C1'" sing N N 89 G "C3'" "O3'" sing N N 90 G "C3'" "C2'" sing N N 91 G "C3'" "H3'" sing N N 92 G "O3'" "HO3'" sing N N 93 G "C2'" "O2'" sing N N 94 G "C2'" "C1'" sing N N 95 G "C2'" "H2'" sing N N 96 G "O2'" "HO2'" sing N N 97 G "C1'" N9 sing N N 98 G "C1'" "H1'" sing N N 99 G N9 C8 sing Y N 100 G N9 C4 sing Y N 101 G C8 N7 doub Y N 102 G C8 H8 sing N N 103 G N7 C5 sing Y N 104 G C5 C6 sing N N 105 G C5 C4 doub Y N 106 G C6 O6 doub N N 107 G C6 N1 sing N N 108 G N1 C2 sing N N 109 G N1 H1 sing N N 110 G C2 N2 sing N N 111 G C2 N3 doub N N 112 G N2 H21 sing N N 113 G N2 H22 sing N N 114 G N3 C4 sing N N 115 HOH O H1 sing N N 116 HOH O H2 sing N N 117 MTU P OP1 doub N N 118 MTU P OP2 sing N N 119 MTU P "O5'" sing N N 120 MTU P O1 sing N N 121 MTU OP2 HO2P sing N N 122 MTU "O5'" "C5'" sing N N 123 MTU "C5'" "C4'" sing N N 124 MTU "C5'" "H5'" sing N N 125 MTU "C5'" "H5''" sing N N 126 MTU "C4'" "O4'" sing N N 127 MTU "C4'" "C3'" sing N N 128 MTU "C4'" "H4'" sing N N 129 MTU "O4'" "C1'" sing N N 130 MTU "C1'" N9 sing N N 131 MTU "C1'" "C2'" sing N N 132 MTU "C1'" "H1'" sing N N 133 MTU N9 C4 sing Y N 134 MTU N9 C8 sing Y N 135 MTU C4 N3 doub Y N 136 MTU C4 C5 sing Y N 137 MTU N3 C2 sing Y N 138 MTU C2 N2 sing N N 139 MTU C2 N1 doub Y N 140 MTU N2 HN21 sing N N 141 MTU N2 HN22 sing N N 142 MTU N1 C6 sing Y N 143 MTU C6 C5 doub Y N 144 MTU C6 H6 sing N N 145 MTU C5 N7 sing Y N 146 MTU N7 C8 doub Y N 147 MTU C8 H8 sing N N 148 MTU "C2'" "O2'" sing N N 149 MTU "C2'" "C3'" sing N N 150 MTU "C2'" "H2'" sing N N 151 MTU "O2'" "HO2'" sing N N 152 MTU "C3'" "O3'" sing N N 153 MTU "C3'" "H3'" sing N N 154 MTU "O3'" "HO3'" sing N N 155 MTU O1 HO1 sing N N 156 U OP3 P sing N N 157 U OP3 HOP3 sing N N 158 U P OP1 doub N N 159 U P OP2 sing N N 160 U P "O5'" sing N N 161 U OP2 HOP2 sing N N 162 U "O5'" "C5'" sing N N 163 U "C5'" "C4'" sing N N 164 U "C5'" "H5'" sing N N 165 U "C5'" "H5''" sing N N 166 U "C4'" "O4'" sing N N 167 U "C4'" "C3'" sing N N 168 U "C4'" "H4'" sing N N 169 U "O4'" "C1'" sing N N 170 U "C3'" "O3'" sing N N 171 U "C3'" "C2'" sing N N 172 U "C3'" "H3'" sing N N 173 U "O3'" "HO3'" sing N N 174 U "C2'" "O2'" sing N N 175 U "C2'" "C1'" sing N N 176 U "C2'" "H2'" sing N N 177 U "O2'" "HO2'" sing N N 178 U "C1'" N1 sing N N 179 U "C1'" "H1'" sing N N 180 U N1 C2 sing N N 181 U N1 C6 sing N N 182 U C2 O2 doub N N 183 U C2 N3 sing N N 184 U N3 C4 sing N N 185 U N3 H3 sing N N 186 U C4 O4 doub N N 187 U C4 C5 sing N N 188 U C5 C6 doub N N 189 U C5 H5 sing N N 190 U C6 H6 sing N N 191 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1T0D 'double helix' 1T0D 'a-form double helix' 1T0D 'bulge loop' 1T0D 'mismatched base pair' 1T0D 'internal loop' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 1 1_555 B C 15 1_555 -0.045 -0.116 -0.246 -3.120 -7.355 0.889 1 A_G1:C34_B A 1 ? B 34 ? 19 1 1 A G 2 1_555 B C 14 1_555 -0.291 -0.309 -0.014 -9.648 -10.933 1.009 2 A_G2:C33_B A 2 ? B 33 ? 19 1 1 A U 3 1_555 B A 13 1_555 0.091 -0.137 0.213 -2.857 -7.380 0.786 3 A_U3:A32_B A 3 ? B 32 ? 20 1 1 A G 4 1_555 B C 12 1_555 -0.178 -0.228 0.028 0.038 -13.041 1.153 4 A_G4:C31_B A 4 ? B 31 ? 19 1 1 A G 5 1_555 B C 11 1_555 -0.300 -0.342 0.041 -6.605 -16.349 -1.822 5 A_G5:C30_B A 5 ? B 30 ? 19 1 1 A U 6 1_555 B A 10 1_555 0.160 -0.140 0.455 -10.703 -17.496 7.581 6 A_U6:A29_B A 6 ? B 29 ? 20 1 1 A G 7 1_555 B C 9 1_555 -0.419 -0.261 0.300 -5.056 -11.992 -1.985 7 A_G7:C28_B A 7 ? B 28 ? 19 1 1 A MTU 8 1_555 B A 8 1_555 0.766 1.281 -0.225 7.248 1.480 -13.946 8 A_MTU8:A27_B A 8 ? B 27 ? ? 1 1 A G 10 1_555 B C 7 1_555 0.070 -0.216 -0.127 0.945 -7.801 1.838 9 A_G10:C26_B A 10 ? B 26 ? 19 1 1 A U 11 1_555 B U 6 1_555 2.253 -1.819 0.006 -1.499 -9.613 11.429 10 A_U11:U25_B A 11 ? B 25 ? 16 1 1 A C 12 1_555 B G 5 1_555 0.861 0.028 -0.148 12.005 -13.850 12.850 11 A_C12:G24_B A 12 ? B 24 ? ? 1 1 A G 13 1_555 B C 4 1_555 -0.154 -0.201 -0.314 -8.124 -10.813 3.738 12 A_G13:C23_B A 13 ? B 23 ? 19 1 1 A C 14 1_555 B G 3 1_555 0.702 -0.335 -0.093 -0.593 -16.902 3.311 13 A_C14:G22_B A 14 ? B 22 ? 19 1 1 A U 15 1_555 B A 2 1_555 0.147 -0.313 0.195 -2.812 -5.917 3.012 14 A_U15:A21_B A 15 ? B 21 ? 20 1 1 A G 16 1_555 B C 1 1_555 -0.288 -0.117 0.286 -1.929 -14.807 2.549 15 A_G16:C20_B A 16 ? B 20 ? 19 1 1 C G 1 1_555 D C 15 1_555 -0.167 -0.242 -0.029 0.357 -10.228 -3.148 16 C_G1:C34_D C 1 ? D 34 ? 19 1 1 C G 2 1_555 D C 14 1_555 -0.360 -0.207 -0.059 -12.134 -16.769 4.179 17 C_G2:C33_D C 2 ? D 33 ? 19 1 1 C U 3 1_555 D A 13 1_555 -0.177 -0.044 -0.064 -4.571 -10.590 -3.998 18 C_U3:A32_D C 3 ? D 32 ? 20 1 1 C G 4 1_555 D C 12 1_555 -0.222 -0.224 -0.013 -4.798 -10.427 -0.184 19 C_G4:C31_D C 4 ? D 31 ? 19 1 1 C G 5 1_555 D C 11 1_555 -0.195 -0.130 -0.082 -11.353 -18.298 4.371 20 C_G5:C30_D C 5 ? D 30 ? 19 1 1 C U 6 1_555 D A 10 1_555 -0.001 -0.119 0.170 -7.596 -15.517 2.996 21 C_U6:A29_D C 6 ? D 29 ? 20 1 1 C G 7 1_555 D C 9 1_555 -0.216 -0.239 0.558 -1.114 -10.805 -0.493 22 C_G7:C28_D C 7 ? D 28 ? 19 1 1 C G 10 1_555 D C 7 1_555 -0.242 -0.257 -0.120 -5.028 -4.580 2.482 23 C_G10:C26_D C 10 ? D 26 ? 19 1 1 C U 11 1_555 D U 6 1_555 2.067 -1.723 -0.056 -4.858 -14.309 2.810 24 C_U11:U25_D C 11 ? D 25 ? 16 1 1 C C 12 1_555 D G 5 1_555 0.199 -0.176 -0.134 3.229 -9.404 5.682 25 C_C12:G24_D C 12 ? D 24 ? 19 1 1 C G 13 1_555 D C 4 1_555 -0.135 -0.175 -0.006 -3.398 -11.121 0.118 26 C_G13:C23_D C 13 ? D 23 ? 19 1 1 C C 14 1_555 D G 3 1_555 0.240 -0.132 0.223 -1.968 -10.448 2.842 27 C_C14:G22_D C 14 ? D 22 ? 19 1 1 C U 15 1_555 D A 2 1_555 0.152 -0.305 -0.209 -0.775 -9.006 0.968 28 C_U15:A21_D C 15 ? D 21 ? 20 1 1 C G 16 1_555 D C 1 1_555 -0.225 -0.099 0.047 -17.222 -20.464 2.848 29 C_G16:C20_D C 16 ? D 20 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 1 1_555 B C 15 1_555 A G 2 1_555 B C 14 1_555 0.416 -1.975 3.303 -0.312 8.618 30.404 -5.115 -0.819 2.653 16.031 0.581 31.575 1 AA_G1G2:C33C34_BB A 1 ? B 34 ? A 2 ? B 33 ? 1 A G 2 1_555 B C 14 1_555 A U 3 1_555 B A 13 1_555 -0.468 -1.402 3.125 -1.563 3.201 32.291 -3.032 0.580 2.994 5.734 2.799 32.482 2 AA_G2U3:A32C33_BB A 2 ? B 33 ? A 3 ? B 32 ? 1 A U 3 1_555 B A 13 1_555 A G 4 1_555 B C 12 1_555 0.283 -1.234 3.044 2.453 10.462 31.791 -3.650 -0.137 2.536 18.453 -4.326 33.514 3 AA_U3G4:C31A32_BB A 3 ? B 32 ? A 4 ? B 31 ? 1 A G 4 1_555 B C 12 1_555 A G 5 1_555 B C 11 1_555 0.071 -1.662 3.405 -1.508 10.468 31.885 -4.535 -0.361 2.733 18.432 2.655 33.550 4 AA_G4G5:C30C31_BB A 4 ? B 31 ? A 5 ? B 30 ? 1 A G 5 1_555 B C 11 1_555 A U 6 1_555 B A 10 1_555 0.997 -1.470 3.272 1.149 6.153 34.209 -3.370 -1.499 3.001 10.352 -1.934 34.760 5 AA_G5U6:A29C30_BB A 5 ? B 30 ? A 6 ? B 29 ? 1 A U 6 1_555 B A 10 1_555 A G 7 1_555 B C 9 1_555 -0.582 -1.718 2.886 2.037 9.104 31.501 -4.300 1.312 2.273 16.326 -3.653 32.820 6 AA_U6G7:C28A29_BB A 6 ? B 29 ? A 7 ? B 28 ? 1 A G 7 1_555 B C 9 1_555 A MTU 8 1_555 B A 8 1_555 -1.064 -1.025 3.160 3.692 6.448 32.678 -2.756 2.405 2.780 11.278 -6.457 33.489 7 AA_G7MTU8:A27C28_BB A 7 ? B 28 ? A 8 ? B 27 ? 1 A MTU 8 1_555 B A 8 1_555 A G 10 1_555 B C 7 1_555 -0.908 -1.967 3.204 -3.948 10.770 38.993 -3.935 0.906 2.667 15.725 5.765 40.582 8 AA_MTU8G10:C26A27_BB A 8 ? B 27 ? A 10 ? B 26 ? 1 A G 10 1_555 B C 7 1_555 A U 11 1_555 B U 6 1_555 0.188 -1.108 3.393 0.421 11.718 44.428 -2.436 -0.204 3.024 15.186 -0.546 45.873 9 AA_G10U11:U25C26_BB A 10 ? B 26 ? A 11 ? B 25 ? 1 A U 11 1_555 B U 6 1_555 A C 12 1_555 B G 5 1_555 0.200 -1.624 2.879 6.687 4.679 23.690 -4.916 1.210 2.480 10.987 -15.704 25.037 10 AA_U11C12:G24U25_BB A 11 ? B 25 ? A 12 ? B 24 ? 1 A C 12 1_555 B G 5 1_555 A G 13 1_555 B C 4 1_555 -1.276 -1.670 3.604 -2.626 10.900 26.642 -5.835 1.962 2.827 22.432 5.405 28.865 11 AA_C12G13:C23G24_BB A 12 ? B 24 ? A 13 ? B 23 ? 1 A G 13 1_555 B C 4 1_555 A C 14 1_555 B G 3 1_555 -0.595 -1.230 3.119 -0.663 6.440 36.162 -2.765 0.861 2.875 10.274 1.058 36.717 12 AA_G13C14:G22C23_BB A 13 ? B 23 ? A 14 ? B 22 ? 1 A C 14 1_555 B G 3 1_555 A U 15 1_555 B A 2 1_555 0.299 -1.321 3.197 -3.318 8.345 30.645 -3.801 -1.100 2.707 15.380 6.114 31.903 13 AA_C14U15:A21G22_BB A 14 ? B 22 ? A 15 ? B 21 ? 1 A U 15 1_555 B A 2 1_555 A G 16 1_555 B C 1 1_555 0.461 -1.571 3.041 2.219 8.074 31.551 -4.027 -0.482 2.596 14.530 -3.994 32.616 14 AA_U15G16:C20A21_BB A 15 ? B 21 ? A 16 ? B 20 ? 1 C G 1 1_555 D C 15 1_555 C G 2 1_555 D C 14 1_555 0.639 -2.217 3.466 0.431 9.382 34.830 -4.883 -0.974 2.802 15.331 -0.704 36.036 15 CC_G1G2:C33C34_DD C 1 ? D 34 ? C 2 ? D 33 ? 1 C G 2 1_555 D C 14 1_555 C U 3 1_555 D A 13 1_555 -1.072 -1.720 3.083 0.240 0.958 31.714 -3.311 2.001 3.023 1.753 -0.440 31.729 16 CC_G2U3:A32C33_DD C 2 ? D 33 ? C 3 ? D 32 ? 1 C U 3 1_555 D A 13 1_555 C G 4 1_555 D C 12 1_555 0.719 -1.363 3.144 1.617 12.536 30.863 -4.239 -1.016 2.454 22.413 -2.890 33.293 17 CC_U3G4:C31A32_DD C 3 ? D 32 ? C 4 ? D 31 ? 1 C G 4 1_555 D C 12 1_555 C G 5 1_555 D C 11 1_555 0.698 -1.823 3.440 2.603 9.606 31.076 -4.888 -0.800 2.815 17.379 -4.709 32.593 18 CC_G4G5:C30C31_DD C 4 ? D 31 ? C 5 ? D 30 ? 1 C G 5 1_555 D C 11 1_555 C U 6 1_555 D A 10 1_555 -0.099 -1.366 3.110 -0.522 5.185 32.312 -3.248 0.094 2.863 9.242 0.930 32.719 19 CC_G5U6:A29C30_DD C 5 ? D 30 ? C 6 ? D 29 ? 1 C U 6 1_555 D A 10 1_555 C G 7 1_555 D C 9 1_555 0.310 -1.394 2.881 -0.565 8.407 30.710 -3.810 -0.650 2.418 15.511 1.042 31.818 20 CC_U6G7:C28A29_DD C 6 ? D 29 ? C 7 ? D 28 ? 1 C G 7 1_555 D C 9 1_555 C G 10 1_555 D C 7 1_555 -2.443 -2.999 6.149 -0.963 14.936 84.642 -2.822 1.756 5.686 11.017 0.710 85.708 21 CC_G7G10:C26C28_DD C 7 ? D 28 ? C 10 ? D 26 ? 1 C G 10 1_555 D C 7 1_555 C U 11 1_555 D U 6 1_555 -0.059 -1.374 3.323 3.359 5.372 43.215 -2.358 0.398 3.126 7.248 -4.532 43.655 22 CC_G10U11:U25C26_DD C 10 ? D 26 ? C 11 ? D 25 ? 1 C U 11 1_555 D U 6 1_555 C C 12 1_555 D G 5 1_555 0.213 -1.735 2.921 4.596 7.760 25.330 -5.378 0.514 2.300 17.023 -10.083 26.863 23 CC_U11C12:G24U25_DD C 11 ? D 25 ? C 12 ? D 24 ? 1 C C 12 1_555 D G 5 1_555 C G 13 1_555 D C 4 1_555 -0.528 -1.768 3.296 -0.937 11.969 27.365 -5.681 0.850 2.349 23.894 1.870 29.837 24 CC_C12G13:C23G24_DD C 12 ? D 24 ? C 13 ? D 23 ? 1 C G 13 1_555 D C 4 1_555 C C 14 1_555 D G 3 1_555 0.001 -1.700 3.267 -2.174 2.744 32.168 -3.524 -0.376 3.109 4.933 3.909 32.353 25 CC_G13C14:G22C23_DD C 13 ? D 23 ? C 14 ? D 22 ? 1 C C 14 1_555 D G 3 1_555 C U 15 1_555 D A 2 1_555 0.105 -1.637 3.188 3.464 6.574 31.632 -3.997 0.376 2.795 11.857 -6.248 32.472 26 CC_C14U15:A21G22_DD C 14 ? D 22 ? C 15 ? D 21 ? 1 C U 15 1_555 D A 2 1_555 C G 16 1_555 D C 1 1_555 0.708 -1.360 3.504 0.327 13.561 33.667 -4.088 -1.093 2.776 22.320 -0.538 36.223 27 CC_U15G16:C20A21_DD C 15 ? D 21 ? C 16 ? D 20 ? # _pdbx_initial_refinement_model.accession_code ? _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'in silico model' _pdbx_initial_refinement_model.source_name Other _pdbx_initial_refinement_model.details 'canonical A-form RNA' # _atom_sites.entry_id 1T0D _atom_sites.fract_transf_matrix[1][1] 0.031606 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.001806 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.011452 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.030547 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P # loop_