data_1TFN # _entry.id 1TFN # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.355 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1TFN pdb_00001tfn 10.2210/pdb1tfn/pdb WWPDB D_1000176658 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1TFN _pdbx_database_status.recvd_initial_deposition_date 1996-07-10 _pdbx_database_status.deposit_site ? _pdbx_database_status.process_site BNL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Kerwood, D.J.' 1 'Borer, P.N.' 2 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary 'Structure Refinement for a 24-Nucleotide RNA Hairpin' MAGN.RESON.CHEM. 33 136 ? 1996 MRCHEG UK 0749-1581 0731 ? -1 ? 1 'Proton NMR and Structural Features of a 24-Nucleotide RNA Hairpin' Biochemistry 340 6488 ? 1995 BICHAW US 0006-2960 0033 ? ? ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Kerwood, D.J.' 1 ? primary 'Borer, P.N.' 2 ? 1 'Borer, P.N.' 3 ? 1 'Lin, Y.' 4 ? 1 'Wang, S.' 5 ? 1 'Roggenbuck, M.W.' 6 ? 1 'Gott, J.M.' 7 ? 1 'Uhlenbeck, O.C.' 8 ? 1 'Pelczer, I.' 9 ? # _cell.entry_id 1TFN _cell.length_a 1.000 _cell.length_b 1.000 _cell.length_c 1.000 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1TFN _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 # _entity.id 1 _entity.type polymer _entity.src_method syn _entity.pdbx_description ;RNA (5'-R(*GP*GP*GP*AP*CP*UP*GP*AP*CP*GP*AP*UP*CP*AP*CP*GP*CP*AP*GP*UP*CP*UP*AP*U)-3') ; _entity.formula_weight 7708.638 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code GGGACUGACGAUCACGCAGUCUAU _entity_poly.pdbx_seq_one_letter_code_can GGGACUGACGAUCACGCAGUCUAU _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 G n 1 3 G n 1 4 A n 1 5 C n 1 6 U n 1 7 G n 1 8 A n 1 9 C n 1 10 G n 1 11 A n 1 12 U n 1 13 C n 1 14 A n 1 15 C n 1 16 G n 1 17 C n 1 18 A n 1 19 G n 1 20 U n 1 21 C n 1 22 U n 1 23 A n 1 24 U n # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 1TFN _struct_ref.pdbx_db_accession 1TFN _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1TFN _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 24 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 1TFN _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 24 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 24 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # _pdbx_nmr_ensemble.entry_id 1TFN _pdbx_nmr_ensemble.conformers_calculated_total_number ? _pdbx_nmr_ensemble.conformers_submitted_total_number 1 _pdbx_nmr_ensemble.conformer_selection_criteria ? # _pdbx_nmr_software.classification refinement _pdbx_nmr_software.name Amber _pdbx_nmr_software.version ? _pdbx_nmr_software.authors KOLLMAN _pdbx_nmr_software.ordinal 1 # _exptl.entry_id 1TFN _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _struct.entry_id 1TFN _struct.title 'STRUCTURE REFINEMENT FOR A 24-NUCLEOTIDE RNA HAIRPIN, NMR, MINIMIZED AVERAGE STRUCTURE' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1TFN _struct_keywords.pdbx_keywords RNA _struct_keywords.text 'RIBONUCLEIC ACID, HAIRPIN, BACTERIOPHAGE R17, RNA' # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A G 2 N2 ? ? ? 1_555 A U 22 O2 ? ? A G 2 A U 22 1_555 ? ? ? ? ? ? 'G-U MISPAIR' ? ? ? hydrog2 hydrog ? ? A G 3 N1 ? ? ? 1_555 A C 21 N3 ? ? A G 3 A C 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 3 N2 ? ? ? 1_555 A C 21 O2 ? ? A G 3 A C 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A G 3 O6 ? ? ? 1_555 A C 21 N4 ? ? A G 3 A C 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A A 4 N1 ? ? ? 1_555 A U 20 N3 ? ? A A 4 A U 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A A 4 N6 ? ? ? 1_555 A U 20 O4 ? ? A A 4 A U 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A C 5 N3 ? ? ? 1_555 A G 19 N1 ? ? A C 5 A G 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A C 5 N4 ? ? ? 1_555 A G 19 O6 ? ? A C 5 A G 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A C 5 O2 ? ? ? 1_555 A G 19 N2 ? ? A C 5 A G 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A U 6 N3 ? ? ? 1_555 A A 18 N1 ? ? A U 6 A A 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A U 6 O4 ? ? ? 1_555 A A 18 N6 ? ? A U 6 A A 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A G 7 N1 ? ? ? 1_555 A C 17 N3 ? ? A G 7 A C 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A G 7 N2 ? ? ? 1_555 A C 17 O2 ? ? A G 7 A C 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A G 7 O6 ? ? ? 1_555 A C 17 N4 ? ? A G 7 A C 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A C 9 N3 ? ? ? 1_555 A G 16 N1 ? ? A C 9 A G 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A C 9 N4 ? ? ? 1_555 A G 16 O6 ? ? A C 9 A G 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A C 9 O2 ? ? ? 1_555 A G 16 N2 ? ? A C 9 A G 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A G 10 N1 ? ? ? 1_555 A C 15 O2 ? ? A G 10 A C 15 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # _database_PDB_matrix.entry_id 1TFN _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1TFN _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 1 1 G G A . n A 1 2 G 2 2 2 G G A . n A 1 3 G 3 3 3 G G A . n A 1 4 A 4 4 4 A A A . n A 1 5 C 5 5 5 C C A . n A 1 6 U 6 6 6 U U A . n A 1 7 G 7 7 7 G G A . n A 1 8 A 8 8 8 A A A . n A 1 9 C 9 9 9 C C A . n A 1 10 G 10 10 10 G G A . n A 1 11 A 11 11 11 A A A . n A 1 12 U 12 12 12 U U A . n A 1 13 C 13 13 13 C C A . n A 1 14 A 14 14 14 A A A . n A 1 15 C 15 15 15 C C A . n A 1 16 G 16 16 16 G G A . n A 1 17 C 17 17 17 C C A . n A 1 18 A 18 18 18 A A A . n A 1 19 G 19 19 19 G G A . n A 1 20 U 20 20 20 U U A . n A 1 21 C 21 21 21 C C A . n A 1 22 U 22 22 22 U U A . n A 1 23 A 23 23 23 A A A . n A 1 24 U 24 24 24 U U A . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1997-02-12 2 'Structure model' 1 1 2008-03-24 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-03-02 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' Other # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_database_status 3 4 'Structure model' pdbx_nmr_software 4 4 'Structure model' pdbx_struct_assembly 5 4 'Structure model' pdbx_struct_oper_list # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_database_status.process_site' 4 4 'Structure model' '_pdbx_nmr_software.name' # _software.name AMBER _software.classification refinement _software.version . _software.citation_id ? _software.pdbx_ordinal 1 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 C4 A G 1 ? ? C5 A G 1 ? ? 1.335 1.379 -0.044 0.007 N 2 1 C5 A G 1 ? ? C6 A G 1 ? ? 1.481 1.419 0.062 0.010 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "C4'" A G 1 ? ? "C3'" A G 1 ? ? "C2'" A G 1 ? ? 96.07 102.60 -6.53 1.00 N 2 1 "C3'" A G 1 ? ? "C2'" A G 1 ? ? "C1'" A G 1 ? ? 108.27 101.50 6.77 0.80 N 3 1 "O4'" A G 1 ? ? "C1'" A G 1 ? ? N9 A G 1 ? ? 115.61 108.50 7.11 0.70 N 4 1 C8 A G 1 ? ? N9 A G 1 ? ? C4 A G 1 ? ? 103.68 106.40 -2.72 0.40 N 5 1 "O4'" A G 2 ? ? "C1'" A G 2 ? ? N9 A G 2 ? ? 116.42 108.50 7.92 0.70 N 6 1 "C1'" A G 3 ? ? "O4'" A G 3 ? ? "C4'" A G 3 ? ? 103.97 109.70 -5.73 0.70 N 7 1 "O4'" A G 3 ? ? "C1'" A G 3 ? ? N9 A G 3 ? ? 116.71 108.50 8.21 0.70 N 8 1 "C4'" A A 4 ? ? "C3'" A A 4 ? ? "C2'" A A 4 ? ? 95.19 102.60 -7.41 1.00 N 9 1 "O4'" A C 5 ? ? "C1'" A C 5 ? ? N1 A C 5 ? ? 112.88 108.50 4.38 0.70 N 10 1 "C2'" A G 7 ? ? "C3'" A G 7 ? ? "O3'" A G 7 ? ? 124.42 113.70 10.72 1.60 N 11 1 "C3'" A G 7 ? ? "O3'" A G 7 ? ? P A A 8 ? ? 128.47 119.70 8.77 1.20 Y 12 1 "O4'" A A 8 ? ? "C1'" A A 8 ? ? N9 A A 8 ? ? 112.99 108.50 4.49 0.70 N 13 1 "C5'" A C 9 ? ? "C4'" A C 9 ? ? "O4'" A C 9 ? ? 117.00 109.80 7.20 0.90 N 14 1 "C5'" A U 12 ? ? "C4'" A U 12 ? ? "O4'" A U 12 ? ? 118.76 109.80 8.96 0.90 N 15 1 "O4'" A A 14 ? ? "C1'" A A 14 ? ? N9 A A 14 ? ? 115.79 108.50 7.29 0.70 N 16 1 "C1'" A C 15 ? ? "O4'" A C 15 ? ? "C4'" A C 15 ? ? 104.29 109.70 -5.41 0.70 N 17 1 "O4'" A C 15 ? ? "C1'" A C 15 ? ? N1 A C 15 ? ? 117.91 108.50 9.41 0.70 N 18 1 "C1'" A G 16 ? ? "O4'" A G 16 ? ? "C4'" A G 16 ? ? 104.52 109.70 -5.18 0.70 N 19 1 "C2'" A C 17 ? ? "C3'" A C 17 ? ? "O3'" A C 17 ? ? 124.79 113.70 11.09 1.60 N 20 1 "C3'" A C 17 ? ? "C2'" A C 17 ? ? "C1'" A C 17 ? ? 96.82 101.30 -4.48 0.70 N 21 1 "C3'" A A 18 ? ? "O3'" A A 18 ? ? P A G 19 ? ? 127.42 119.70 7.72 1.20 Y 22 1 "C3'" A G 19 ? ? "O3'" A G 19 ? ? P A U 20 ? ? 128.46 119.70 8.76 1.20 Y 23 1 "O4'" A U 20 ? ? "C1'" A U 20 ? ? N1 A U 20 ? ? 113.30 108.50 4.80 0.70 N 24 1 "O4'" A U 22 ? ? "C1'" A U 22 ? ? N1 A U 22 ? ? 115.59 108.50 7.09 0.70 N # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 G A 1 ? ? 0.169 'SIDE CHAIN' 2 1 G A 3 ? ? 0.079 'SIDE CHAIN' 3 1 A A 4 ? ? 0.123 'SIDE CHAIN' 4 1 C A 5 ? ? 0.077 'SIDE CHAIN' 5 1 G A 7 ? ? 0.076 'SIDE CHAIN' 6 1 C A 9 ? ? 0.137 'SIDE CHAIN' 7 1 A A 11 ? ? 0.066 'SIDE CHAIN' 8 1 U A 12 ? ? 0.281 'SIDE CHAIN' 9 1 G A 19 ? ? 0.122 'SIDE CHAIN' 10 1 U A 20 ? ? 0.080 'SIDE CHAIN' 11 1 U A 22 ? ? 0.110 'SIDE CHAIN' # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A G 2 ? OP1 ? A G 2 OP1 2 1 Y 1 A G 2 ? OP2 ? A G 2 OP2 3 1 Y 1 A G 3 ? OP1 ? A G 3 OP1 4 1 Y 1 A G 3 ? OP2 ? A G 3 OP2 5 1 Y 1 A A 4 ? OP1 ? A A 4 OP1 6 1 Y 1 A A 4 ? OP2 ? A A 4 OP2 7 1 Y 1 A C 5 ? OP1 ? A C 5 OP1 8 1 Y 1 A C 5 ? OP2 ? A C 5 OP2 9 1 Y 1 A U 6 ? OP1 ? A U 6 OP1 10 1 Y 1 A U 6 ? OP2 ? A U 6 OP2 11 1 Y 1 A G 7 ? OP1 ? A G 7 OP1 12 1 Y 1 A G 7 ? OP2 ? A G 7 OP2 13 1 Y 1 A A 8 ? OP1 ? A A 8 OP1 14 1 Y 1 A A 8 ? OP2 ? A A 8 OP2 15 1 Y 1 A C 9 ? OP1 ? A C 9 OP1 16 1 Y 1 A C 9 ? OP2 ? A C 9 OP2 17 1 Y 1 A G 10 ? OP1 ? A G 10 OP1 18 1 Y 1 A G 10 ? OP2 ? A G 10 OP2 19 1 Y 1 A A 11 ? OP1 ? A A 11 OP1 20 1 Y 1 A A 11 ? OP2 ? A A 11 OP2 21 1 Y 1 A U 12 ? OP1 ? A U 12 OP1 22 1 Y 1 A U 12 ? OP2 ? A U 12 OP2 23 1 Y 1 A C 13 ? OP1 ? A C 13 OP1 24 1 Y 1 A C 13 ? OP2 ? A C 13 OP2 25 1 Y 1 A A 14 ? OP1 ? A A 14 OP1 26 1 Y 1 A A 14 ? OP2 ? A A 14 OP2 27 1 Y 1 A C 15 ? OP1 ? A C 15 OP1 28 1 Y 1 A C 15 ? OP2 ? A C 15 OP2 29 1 Y 1 A G 16 ? OP1 ? A G 16 OP1 30 1 Y 1 A G 16 ? OP2 ? A G 16 OP2 31 1 Y 1 A C 17 ? OP1 ? A C 17 OP1 32 1 Y 1 A C 17 ? OP2 ? A C 17 OP2 33 1 Y 1 A A 18 ? OP1 ? A A 18 OP1 34 1 Y 1 A A 18 ? OP2 ? A A 18 OP2 35 1 Y 1 A G 19 ? OP1 ? A G 19 OP1 36 1 Y 1 A G 19 ? OP2 ? A G 19 OP2 37 1 Y 1 A U 20 ? OP1 ? A U 20 OP1 38 1 Y 1 A U 20 ? OP2 ? A U 20 OP2 39 1 Y 1 A C 21 ? OP1 ? A C 21 OP1 40 1 Y 1 A C 21 ? OP2 ? A C 21 OP2 41 1 Y 1 A U 22 ? OP1 ? A U 22 OP1 42 1 Y 1 A U 22 ? OP2 ? A U 22 OP2 43 1 Y 1 A A 23 ? OP1 ? A A 23 OP1 44 1 Y 1 A A 23 ? OP2 ? A A 23 OP2 45 1 Y 1 A U 24 ? OP1 ? A U 24 OP1 46 1 Y 1 A U 24 ? OP2 ? A U 24 OP2 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1TFN 'double helix' 1TFN 'a-form double helix' 1TFN 'hairpin loop' 1TFN 'bulge loop' 1TFN 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 2 1_555 A U 22 1_555 0.041 2.160 1.289 -17.829 -16.105 60.103 1 A_G2:U22_A A 2 ? A 22 ? ? ? 1 A G 3 1_555 A C 21 1_555 -0.382 -0.091 0.366 -11.209 -8.358 0.163 2 A_G3:C21_A A 3 ? A 21 ? 19 1 1 A A 4 1_555 A U 20 1_555 -0.956 -0.454 -0.774 -3.502 -31.406 19.399 3 A_A4:U20_A A 4 ? A 20 ? 20 1 1 A C 5 1_555 A G 19 1_555 0.496 -0.315 -0.936 -3.223 -23.932 6.435 4 A_C5:G19_A A 5 ? A 19 ? 19 1 1 A U 6 1_555 A A 18 1_555 -0.210 -0.090 0.477 -10.905 -5.428 6.272 5 A_U6:A18_A A 6 ? A 18 ? 20 1 1 A G 7 1_555 A C 17 1_555 -0.424 -0.149 -0.393 -10.997 -11.620 -0.869 6 A_G7:C17_A A 7 ? A 17 ? 19 1 1 A C 9 1_555 A G 16 1_555 0.480 -0.098 0.279 -7.938 10.356 3.808 7 A_C9:G16_A A 9 ? A 16 ? 19 1 1 A G 10 1_555 A C 15 1_555 -0.917 0.150 0.190 14.604 12.735 8.984 8 A_G10:C15_A A 10 ? A 15 ? ? 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 2 1_555 A U 22 1_555 A G 3 1_555 A C 21 1_555 -1.918 -1.336 3.179 7.301 -3.040 19.018 -2.538 8.251 2.461 -8.728 -20.960 20.583 1 AA_G2G3:C21U22_AA A 2 ? A 22 ? A 3 ? A 21 ? 1 A G 3 1_555 A C 21 1_555 A A 4 1_555 A U 20 1_555 -0.704 -1.925 3.167 6.194 8.529 23.388 -6.375 3.065 2.096 19.800 -14.379 25.624 2 AA_G3A4:U20C21_AA A 3 ? A 21 ? A 4 ? A 20 ? 1 A A 4 1_555 A U 20 1_555 A C 5 1_555 A G 19 1_555 -0.973 -0.475 3.097 -2.526 -1.586 34.568 -0.563 1.260 3.175 -2.662 4.241 34.693 3 AA_A4C5:G19U20_AA A 4 ? A 20 ? A 5 ? A 19 ? 1 A C 5 1_555 A G 19 1_555 A U 6 1_555 A A 18 1_555 0.450 -1.898 3.363 -9.978 17.243 26.944 -5.735 -2.190 1.633 32.033 18.537 33.399 4 AA_C5U6:A18G19_AA A 5 ? A 19 ? A 6 ? A 18 ? 1 A U 6 1_555 A A 18 1_555 A G 7 1_555 A C 17 1_555 -0.281 -1.728 3.028 7.677 6.855 27.445 -4.685 1.973 2.373 13.847 -15.507 29.277 5 AA_U6G7:C17A18_AA A 6 ? A 18 ? A 7 ? A 17 ? 1 A G 7 1_555 A C 17 1_555 A C 9 1_555 A G 16 1_555 -1.342 -0.224 5.824 21.131 13.463 55.126 -1.370 3.139 4.898 13.783 -21.633 60.144 6 AA_G7C9:G16C17_AA A 7 ? A 17 ? A 9 ? A 16 ? 1 A C 9 1_555 A G 16 1_555 A G 10 1_555 A C 15 1_555 -0.320 -1.533 2.428 -1.579 12.098 11.565 -9.658 0.521 0.605 46.297 6.041 16.796 7 AA_C9G10:C15G16_AA A 9 ? A 16 ? A 10 ? A 15 ? #