data_1TMU # _entry.id 1TMU # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.329 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 1TMU WWPDB D_1000176738 # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 1TMT _pdbx_database_related.content_type unspecified _pdbx_database_related.details unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1TMU _pdbx_database_status.recvd_initial_deposition_date 1994-05-26 _pdbx_database_status.deposit_site ? _pdbx_database_status.process_site BNL _pdbx_database_status.SG_entry . _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Priestle, J.P.' 1 'Gruetter, M.G.' 2 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary 'Changes in interactions in complexes of hirudin derivatives and human alpha-thrombin due to different crystal forms.' 'Protein Sci.' 2 1630 1642 1993 PRCIEI US 0961-8368 0795 ? 8251938 ? 1 'Structure of the Hirugen and Hirulog Complexes of Alpha-Thrombin' J.Mol.Biol. 221 1379 ? 1991 JMOBAK UK 0022-2836 0070 ? ? ? 2 'Refined Structure of the Hirudin-Thrombin Complex' J.Mol.Biol. 221 583 ? 1991 JMOBAK UK 0022-2836 0070 ? ? ? 3 'Crystal Structure of the Thrombin-Hirudin Complex: A Novel Mode of Serine Protease Inhibition' 'Embo J.' 9 2361 ? 1990 EMJODG UK 0261-4189 0897 ? ? ? 4 ;The Refined 1.9 Angstrom Crystal Structure of Human Alpha Thrombin: Interaction with D-Phe-Pro-Arg Chloromethylketone and Significance of the Tyr-Pro-Pro-Trp Insertion Segment ; 'Embo J.' 8 3467 ? 1989 EMJODG UK 0261-4189 0897 ? ? ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Priestle, J.P.' 1 ? primary 'Rahuel, J.' 2 ? primary 'Rink, H.' 3 ? primary 'Tones, M.' 4 ? primary 'Grutter, M.G.' 5 ? 1 'Skrzypczak-Jankun, E.' 6 ? 1 'Carperos, V.E.' 7 ? 1 'Ravichandran, K.G.' 8 ? 1 'Tulinsky, A.' 9 ? 2 'Rydel, T.J.' 10 ? 2 'Tulinsky, A.' 11 ? 2 'Bode, W.' 12 ? 2 'Huber, R.' 13 ? 3 'Gruetter, M.G.' 14 ? 3 'Priestle, J.P.' 15 ? 3 'Rahuel, J.' 16 ? 3 'Grossenbacher, H.' 17 ? 3 'Bode, W.' 18 ? 3 'Hofsteenge, J.' 19 ? 3 'Stone, S.R.' 20 ? 4 'Bode, W.' 21 ? 4 'Mayr, I.' 22 ? 4 'Baumann, U.' 23 ? 4 'Huber, R.' 24 ? 4 'Stone, S.R.' 25 ? 4 'Hofsteenge, J.' 26 ? # _cell.entry_id 1TMU _cell.length_a 80.900 _cell.length_b 107.500 _cell.length_c 45.900 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 1TMU _symmetry.space_group_name_H-M 'P 21 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer nat 'Thrombin light chain' 3317.741 1 3.4.21.5 ? 'residues 328-363' ? 2 polymer nat 'Thrombin heavy chain' 29780.219 1 3.4.21.5 ? 'residues 364-622' ? 3 polymer syn 'Hirudin variant-2' 1491.528 1 ? ? 'residues 62-72' ? 4 non-polymer syn 'D-phenylalanyl-N-[(2S,3S)-6-{[amino(iminio)methyl]amino}-1-chloro-2-hydroxyhexan-3-yl]-L-prolinamide' 453.986 1 ? ? ? ? 5 non-polymer man 2-acetamido-2-deoxy-beta-D-glucopyranose 221.208 1 ? ? ? ? 6 water nat water 18.015 72 ? ? ? ? # loop_ _entity_name_com.entity_id _entity_name_com.name 1 'Coagulation factor II' 2 'Coagulation factor II' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no EADCGLRPLFEKKSLEDKTERELLESYI EADCGLRPLFEKKSLEDKTERELLESYI L ? 2 'polypeptide(L)' no no ;IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISM LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVL QVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFY THVFRLKKWIQKVIDQFGE ; ;IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISM LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVL QVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFY THVFRLKKWIQKVIDQFGE ; H ? 3 'polypeptide(L)' no yes 'DFEEIPEE(TYS)LQ' DFEEIPEEYLQ J ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLU n 1 2 ALA n 1 3 ASP n 1 4 CYS n 1 5 GLY n 1 6 LEU n 1 7 ARG n 1 8 PRO n 1 9 LEU n 1 10 PHE n 1 11 GLU n 1 12 LYS n 1 13 LYS n 1 14 SER n 1 15 LEU n 1 16 GLU n 1 17 ASP n 1 18 LYS n 1 19 THR n 1 20 GLU n 1 21 ARG n 1 22 GLU n 1 23 LEU n 1 24 LEU n 1 25 GLU n 1 26 SER n 1 27 TYR n 1 28 ILE n 2 1 ILE n 2 2 VAL n 2 3 GLU n 2 4 GLY n 2 5 SER n 2 6 ASP n 2 7 ALA n 2 8 GLU n 2 9 ILE n 2 10 GLY n 2 11 MET n 2 12 SER n 2 13 PRO n 2 14 TRP n 2 15 GLN n 2 16 VAL n 2 17 MET n 2 18 LEU n 2 19 PHE n 2 20 ARG n 2 21 LYS n 2 22 SER n 2 23 PRO n 2 24 GLN n 2 25 GLU n 2 26 LEU n 2 27 LEU n 2 28 CYS n 2 29 GLY n 2 30 ALA n 2 31 SER n 2 32 LEU n 2 33 ILE n 2 34 SER n 2 35 ASP n 2 36 ARG n 2 37 TRP n 2 38 VAL n 2 39 LEU n 2 40 THR n 2 41 ALA n 2 42 ALA n 2 43 HIS n 2 44 CYS n 2 45 LEU n 2 46 LEU n 2 47 TYR n 2 48 PRO n 2 49 PRO n 2 50 TRP n 2 51 ASP n 2 52 LYS n 2 53 ASN n 2 54 PHE n 2 55 THR n 2 56 GLU n 2 57 ASN n 2 58 ASP n 2 59 LEU n 2 60 LEU n 2 61 VAL n 2 62 ARG n 2 63 ILE n 2 64 GLY n 2 65 LYS n 2 66 HIS n 2 67 SER n 2 68 ARG n 2 69 THR n 2 70 ARG n 2 71 TYR n 2 72 GLU n 2 73 ARG n 2 74 ASN n 2 75 ILE n 2 76 GLU n 2 77 LYS n 2 78 ILE n 2 79 SER n 2 80 MET n 2 81 LEU n 2 82 GLU n 2 83 LYS n 2 84 ILE n 2 85 TYR n 2 86 ILE n 2 87 HIS n 2 88 PRO n 2 89 ARG n 2 90 TYR n 2 91 ASN n 2 92 TRP n 2 93 ARG n 2 94 GLU n 2 95 ASN n 2 96 LEU n 2 97 ASP n 2 98 ARG n 2 99 ASP n 2 100 ILE n 2 101 ALA n 2 102 LEU n 2 103 MET n 2 104 LYS n 2 105 LEU n 2 106 LYS n 2 107 LYS n 2 108 PRO n 2 109 VAL n 2 110 ALA n 2 111 PHE n 2 112 SER n 2 113 ASP n 2 114 TYR n 2 115 ILE n 2 116 HIS n 2 117 PRO n 2 118 VAL n 2 119 CYS n 2 120 LEU n 2 121 PRO n 2 122 ASP n 2 123 ARG n 2 124 GLU n 2 125 THR n 2 126 ALA n 2 127 ALA n 2 128 SER n 2 129 LEU n 2 130 LEU n 2 131 GLN n 2 132 ALA n 2 133 GLY n 2 134 TYR n 2 135 LYS n 2 136 GLY n 2 137 ARG n 2 138 VAL n 2 139 THR n 2 140 GLY n 2 141 TRP n 2 142 GLY n 2 143 ASN n 2 144 LEU n 2 145 LYS n 2 146 GLU n 2 147 THR n 2 148 TRP n 2 149 THR n 2 150 ALA n 2 151 ASN n 2 152 VAL n 2 153 GLY n 2 154 LYS n 2 155 GLY n 2 156 GLN n 2 157 PRO n 2 158 SER n 2 159 VAL n 2 160 LEU n 2 161 GLN n 2 162 VAL n 2 163 VAL n 2 164 ASN n 2 165 LEU n 2 166 PRO n 2 167 ILE n 2 168 VAL n 2 169 GLU n 2 170 ARG n 2 171 PRO n 2 172 VAL n 2 173 CYS n 2 174 LYS n 2 175 ASP n 2 176 SER n 2 177 THR n 2 178 ARG n 2 179 ILE n 2 180 ARG n 2 181 ILE n 2 182 THR n 2 183 ASP n 2 184 ASN n 2 185 MET n 2 186 PHE n 2 187 CYS n 2 188 ALA n 2 189 GLY n 2 190 TYR n 2 191 LYS n 2 192 PRO n 2 193 ASP n 2 194 GLU n 2 195 GLY n 2 196 LYS n 2 197 ARG n 2 198 GLY n 2 199 ASP n 2 200 ALA n 2 201 CYS n 2 202 GLU n 2 203 GLY n 2 204 ASP n 2 205 SER n 2 206 GLY n 2 207 GLY n 2 208 PRO n 2 209 PHE n 2 210 VAL n 2 211 MET n 2 212 LYS n 2 213 SER n 2 214 PRO n 2 215 PHE n 2 216 ASN n 2 217 ASN n 2 218 ARG n 2 219 TRP n 2 220 TYR n 2 221 GLN n 2 222 MET n 2 223 GLY n 2 224 ILE n 2 225 VAL n 2 226 SER n 2 227 TRP n 2 228 GLY n 2 229 GLU n 2 230 GLY n 2 231 CYS n 2 232 ASP n 2 233 ARG n 2 234 ASP n 2 235 GLY n 2 236 LYS n 2 237 TYR n 2 238 GLY n 2 239 PHE n 2 240 TYR n 2 241 THR n 2 242 HIS n 2 243 VAL n 2 244 PHE n 2 245 ARG n 2 246 LEU n 2 247 LYS n 2 248 LYS n 2 249 TRP n 2 250 ILE n 2 251 GLN n 2 252 LYS n 2 253 VAL n 2 254 ILE n 2 255 ASP n 2 256 GLN n 2 257 PHE n 2 258 GLY n 2 259 GLU n 3 1 ASP n 3 2 PHE n 3 3 GLU n 3 4 GLU n 3 5 ILE n 3 6 PRO n 3 7 GLU n 3 8 GLU n 3 9 TYS n 3 10 LEU n 3 11 GLN n # loop_ _entity_src_nat.entity_id _entity_src_nat.pdbx_src_id _entity_src_nat.pdbx_alt_source_flag _entity_src_nat.pdbx_beg_seq_num _entity_src_nat.pdbx_end_seq_num _entity_src_nat.common_name _entity_src_nat.pdbx_organism_scientific _entity_src_nat.pdbx_ncbi_taxonomy_id _entity_src_nat.genus _entity_src_nat.species _entity_src_nat.strain _entity_src_nat.tissue _entity_src_nat.tissue_fraction _entity_src_nat.pdbx_secretion _entity_src_nat.pdbx_fragment _entity_src_nat.pdbx_variant _entity_src_nat.pdbx_cell_line _entity_src_nat.pdbx_atcc _entity_src_nat.pdbx_cellular_location _entity_src_nat.pdbx_organ _entity_src_nat.pdbx_organelle _entity_src_nat.pdbx_cell _entity_src_nat.pdbx_plasmid_name _entity_src_nat.pdbx_plasmid_details _entity_src_nat.details 1 1 sample ? ? human 'Homo sapiens' 9606 Homo ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 2 1 sample ? ? human 'Homo sapiens' 9606 Homo ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _pdbx_entity_src_syn.entity_id 3 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific 'HIRUDO MEDICINALIS' _pdbx_entity_src_syn.organism_common_name 'Medicinal leech' _pdbx_entity_src_syn.ncbi_taxonomy_id 6421 _pdbx_entity_src_syn.details ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.entity_id _struct_ref.pdbx_db_accession _struct_ref.pdbx_align_begin _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_db_isoform 1 UNP THRB_HUMAN 1 P00734 333 EADCGLRPLFEKKSLEDKTERELLESYI ? 2 UNP THRB_HUMAN 2 P00734 364 ;IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISM LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVL QVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFY THVFRLKKWIQKVIDQFGE ; ? 3 UNP HIRV2_HIRME 3 P09945 62 DFEEIPEEYLQ ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1TMU L 4 ? 17 ? P00734 333 ? 360 ? 1 14 2 2 1TMU H 1 ? 257 ? P00734 364 ? 622 ? 16 245 3 3 1TMU J 1 ? 11 ? P09945 62 ? 72 ? 55 65 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 0G6 peptide-like . 'D-phenylalanyl-N-[(2S,3S)-6-{[amino(iminio)methyl]amino}-1-chloro-2-hydroxyhexan-3-yl]-L-prolinamide' PPACK 'C21 H34 Cl N6 O3 1' 453.986 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NAG 'D-saccharide, beta linking' . 2-acetamido-2-deoxy-beta-D-glucopyranose ? 'C8 H15 N O6' 221.208 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 TYS 'L-peptide linking' n O-SULFO-L-TYROSINE ? 'C9 H11 N O6 S' 261.252 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1TMU _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.86 _exptl_crystal.density_percent_sol 56.93 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_monochromatic_or_laue_m_l ? _diffrn_radiation.pdbx_diffrn_protocol ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _refine.entry_id 1TMU _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 10.0 _refine.ls_d_res_high 2.5 _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs 0.202 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_redundancy_reflns_obs ? _refine.pdbx_overall_phase_error ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2400 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 44 _refine_hist.number_atoms_solvent 72 _refine_hist.number_atoms_total 2516 _refine_hist.d_res_high 2.5 _refine_hist.d_res_low 10.0 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function t_bond_d 0.019 ? ? ? 'X-RAY DIFFRACTION' ? t_angle_deg 3.4 ? ? ? 'X-RAY DIFFRACTION' ? t_dihedral_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? t_incorr_chiral_ct ? ? ? ? 'X-RAY DIFFRACTION' ? t_pseud_angle ? ? ? ? 'X-RAY DIFFRACTION' ? t_trig_c_planes ? ? ? ? 'X-RAY DIFFRACTION' ? t_gen_planes ? ? ? ? 'X-RAY DIFFRACTION' ? t_it ? ? ? ? 'X-RAY DIFFRACTION' ? t_nbd ? ? ? ? 'X-RAY DIFFRACTION' ? # _struct.entry_id 1TMU _struct.title 'Changes in interactions in complexes of hirudin derivatives and human alpha-thrombin due to different crystal forms' _struct.pdbx_descriptor ;ALPHA-THROMBIN (E.C.3.4.21.5) TERNARY COMPLEX WITH HIRUDIN (C-TERMINAL FRAGMENT, RESIDUES 55 - 65) AND PPACK (D-PHE-PRO-ARG-CHLOROMETHYLKETONE) ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1TMU _struct_keywords.pdbx_keywords 'HYDROLASE/HYDROLASE INHIBITOR' _struct_keywords.text 'SERINE PROTEASE, PPACK INHIBITOR, Blood coagulation, HYDROLASE-HYDROLASE INHIBITOR COMPLEX' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? F N N 6 ? G N N 6 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AH1 ARG A 7 ? SER A 14 ? ARG L 4 SER L 11 1 'MIXED ALPHA, 3/10' 8 HELX_P HELX_P2 AH2 THR A 19 B TYR A 27 J THR L 14 TYR L 14 1 'MIXED ALPHA, 3/10' 9 HELX_P HELX_P3 BH1 ASP B 122 ? LEU B 130 ? ASP H 125 LEU H 130 1 ? 9 HELX_P HELX_P4 BH2 GLU B 169 ? SER B 176 ? GLU H 164 SER H 171 1 ? 8 HELX_P HELX_P5 BH3 LEU B 246 ? PHE B 257 ? LEU H 234 PHE H 245 1 ? 12 HELX_P HELX_P6 HH1 PRO C 6 ? LEU C 10 ? PRO J 60 LEU J 64 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 4 SG ? ? ? 1_555 B CYS 119 SG ? ? L CYS 1 H CYS 122 1_555 ? ? ? ? ? ? ? 2.030 ? ? disulf2 disulf ? ? B CYS 28 SG ? ? ? 1_555 B CYS 44 SG ? ? H CYS 42 H CYS 58 1_555 ? ? ? ? ? ? ? 2.010 ? ? disulf3 disulf ? ? B CYS 173 SG ? ? ? 1_555 B CYS 187 SG ? ? H CYS 168 H CYS 182 1_555 ? ? ? ? ? ? ? 2.022 ? ? disulf4 disulf ? ? B CYS 201 SG ? ? ? 1_555 B CYS 231 SG ? ? H CYS 191 H CYS 220 1_555 ? ? ? ? ? ? ? 2.040 ? ? covale1 covale one ? D 0G6 . C3 ? ? ? 1_555 B HIS 43 NE2 ? ? H 0G6 1 H HIS 57 1_555 ? ? ? ? ? ? ? 1.368 ? ? covale2 covale none ? D 0G6 . C2 ? ? ? 1_555 B SER 205 OG ? ? H 0G6 1 H SER 195 1_555 ? ? ? ? ? ? ? 1.375 ? ? covale3 covale one ? B ASN 53 ND2 ? G ? 1_555 E NAG . C1 ? ? H ASN 60 H NAG 250 1_555 ? ? ? ? ? ? ? 1.317 ? N-Glycosylation covale4 covale both ? C GLU 8 C ? ? ? 1_555 C TYS 9 N ? ? J GLU 62 J TYS 63 1_555 ? ? ? ? ? ? ? 1.297 ? ? covale5 covale both ? C TYS 9 C ? ? ? 1_555 C LEU 10 N ? ? J TYS 63 J LEU 64 1_555 ? ? ? ? ? ? ? 1.331 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id SER _struct_mon_prot_cis.label_seq_id 22 _struct_mon_prot_cis.label_asym_id B _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code A _struct_mon_prot_cis.auth_comp_id SER _struct_mon_prot_cis.auth_seq_id 36 _struct_mon_prot_cis.auth_asym_id H _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 23 _struct_mon_prot_cis.pdbx_label_asym_id_2 B _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 37 _struct_mon_prot_cis.pdbx_auth_asym_id_2 H _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle -5.59 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details BS1 ? 7 ? BS2 ? 8 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense BS1 1 2 ? anti-parallel BS1 2 3 ? anti-parallel BS1 3 4 ? anti-parallel BS1 4 5 ? anti-parallel BS1 5 6 ? anti-parallel BS1 6 7 ? anti-parallel BS2 1 2 ? anti-parallel BS2 2 3 ? anti-parallel BS2 3 4 ? anti-parallel BS2 4 5 ? anti-parallel BS2 5 6 ? anti-parallel BS2 6 7 ? anti-parallel BS2 7 8 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id BS1 1 TRP B 14 ? LYS B 21 ? TRP H 29 LYS H 36 BS1 2 GLU B 25 ? ILE B 33 ? GLU H 39 ILE H 47 BS1 3 ARG B 36 ? THR B 40 ? ARG H 50 THR H 54 BS1 4 ILE B 100 ? LYS B 106 ? ILE H 103 LYS H 109 BS1 5 LYS B 77 ? HIS B 87 ? LYS H 81 HIS H 91 BS1 6 ASP B 58 ? ILE B 63 ? ASP H 63 ILE H 68 BS1 7 TRP B 14 ? LYS B 21 ? TRP H 29 LYS H 36 BS2 1 LEU B 160 ? VAL B 168 ? LEU H 155 VAL H 163 BS2 2 ASN B 184 ? GLY B 189 ? ASN H 179 GLY H 184 BS2 3 GLY B 238 ? VAL B 243 ? GLY H 226 VAL H 231 BS2 4 ASN B 216 B TRP B 227 ? ASN H 204 TRP H 215 BS2 5 GLY B 206 ? SER B 213 ? GLY H 196 SER H 203 BS2 6 GLY B 133 ? GLY B 140 ? GLY H 133 GLY H 140 BS2 7 LEU B 160 ? VAL B 168 ? LEU H 155 VAL H 163 BS2 8 SER B 5 ? ALA B 7 ? SER H 20 ALA H 22 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id BS1 1 2 O VAL B 16 ? O VAL H 31 N ALA B 30 ? N ALA H 44 BS1 2 3 O SER B 31 ? O SER H 45 N LEU B 39 ? N LEU H 53 BS1 3 4 O VAL B 38 ? O VAL H 52 N MET B 103 ? N MET H 106 BS1 4 5 O LEU B 102 ? O LEU H 105 N TYR B 85 ? N TYR H 89 BS1 5 6 O SER B 79 ? O SER H 83 N VAL B 61 ? N VAL H 66 BS1 6 7 O LEU B 60 ? O LEU H 65 N PHE B 19 ? N PHE H 34 BS2 1 2 O PRO B 166 ? O PRO H 161 N GLY B 189 ? N GLY H 184 BS2 2 3 O PHE B 186 ? O PHE H 181 N TYR B 240 ? N TYR H 228 BS2 3 4 O THR B 241 ? O THR H 229 N ILE B 224 ? N ILE H 212 BS2 4 5 O TYR B 220 ? O TYR H 208 N MET B 211 ? N MET H 201 BS2 5 6 O VAL B 210 ? O VAL H 200 N ARG B 137 ? N ARG H 137 BS2 6 7 O VAL B 138 ? O VAL H 138 N VAL B 163 ? N VAL H 158 BS2 7 8 O VAL B 162 ? O VAL H 157 N SER B 5 ? N SER H 20 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details CAT Author ? ? ? ? 3 'CATALYTIC TRIAD OF THROMBIN' S1 Author ? ? ? ? 10 'BINDING SUBSITES 1 ON THROMBIN' S2 Author ? ? ? ? 5 'BINDING SUBSITES 2 ON THROMBIN' S3 Author ? ? ? ? 4 'BINDING SUBSITES 3 ON THROMBIN' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 CAT 3 SER B 205 ? SER H 195 . ? 1_555 ? 2 CAT 3 HIS B 43 ? HIS H 57 . ? 1_555 ? 3 CAT 3 ASP B 99 ? ASP H 102 . ? 1_555 ? 4 S1 10 HIS B 43 ? HIS H 57 . ? 1_555 ? 5 S1 10 ASP B 199 ? ASP H 189 . ? 1_555 ? 6 S1 10 ALA B 200 ? ALA H 190 . ? 1_555 ? 7 S1 10 CYS B 201 ? CYS H 191 . ? 1_555 ? 8 S1 10 SER B 205 ? SER H 195 . ? 1_555 ? 9 S1 10 TRP B 227 ? TRP H 215 . ? 1_555 ? 10 S1 10 GLY B 228 ? GLY H 216 . ? 1_555 ? 11 S1 10 GLY B 230 ? GLY H 219 . ? 1_555 ? 12 S1 10 CYS B 231 ? CYS H 220 . ? 1_555 ? 13 S1 10 GLY B 238 ? GLY H 226 . ? 1_555 ? 14 S2 5 HIS B 43 ? HIS H 57 . ? 1_555 ? 15 S2 5 TYR B 47 A TYR H 60 . ? 1_555 ? 16 S2 5 LEU B 96 ? LEU H 99 . ? 1_555 ? 17 S2 5 GLU B 202 ? GLU H 192 . ? 1_555 ? 18 S2 5 SER B 226 ? SER H 214 . ? 1_555 ? 19 S3 4 GLU B 94 A GLU H 97 . ? 1_555 ? 20 S3 4 ASN B 95 ? ASN H 98 . ? 1_555 ? 21 S3 4 LEU B 96 ? LEU H 99 . ? 1_555 ? 22 S3 4 TRP B 227 ? TRP H 215 . ? 1_555 ? # _database_PDB_matrix.entry_id 1TMU _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1TMU _atom_sites.fract_transf_matrix[1][1] 0.012361 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.009302 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.021786 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_sites_footnote.id _atom_sites_footnote.text 1 'CIS PROLINE - PRO H 37' 2 'THE FOLLOWING RESIDUES OF THROMBIN HAVE DISORDERED SIDE CHAINS: LYS B 81, LYS B 110, LYS B 149E, AND LYS B 236.' 3 'RESIDUE TYR H 63 IS SULFATED AS IT IS IN NATIVE HIRUDIN.' # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLU 1 1 1 GLU GLU L C n A 1 2 ALA 2 1 1 ALA ALA L B n A 1 3 ASP 3 1 1 ASP ASP L A n A 1 4 CYS 4 1 1 CYS CYS L . n A 1 5 GLY 5 2 2 GLY GLY L . n A 1 6 LEU 6 3 3 LEU LEU L . n A 1 7 ARG 7 4 4 ARG ARG L . n A 1 8 PRO 8 5 5 PRO PRO L . n A 1 9 LEU 9 6 6 LEU LEU L . n A 1 10 PHE 10 7 7 PHE PHE L . n A 1 11 GLU 11 8 8 GLU GLU L . n A 1 12 LYS 12 9 9 LYS LYS L . n A 1 13 LYS 13 10 10 LYS LYS L . n A 1 14 SER 14 11 11 SER SER L . n A 1 15 LEU 15 12 12 LEU LEU L . n A 1 16 GLU 16 13 13 GLU GLU L . n A 1 17 ASP 17 14 14 ASP ASP L . n A 1 18 LYS 18 14 14 LYS LYS L A n A 1 19 THR 19 14 14 THR THR L B n A 1 20 GLU 20 14 14 GLU GLU L C n A 1 21 ARG 21 14 14 ARG ARG L D n A 1 22 GLU 22 14 14 GLU GLU L E n A 1 23 LEU 23 14 14 LEU LEU L F n A 1 24 LEU 24 14 14 LEU LEU L G n A 1 25 GLU 25 14 14 GLU GLU L H n A 1 26 SER 26 14 14 SER SER L I n A 1 27 TYR 27 14 14 TYR TYR L J n A 1 28 ILE 28 14 14 ILE ILE L K n B 2 1 ILE 1 16 16 ILE ILE H . n B 2 2 VAL 2 17 17 VAL VAL H . n B 2 3 GLU 3 18 18 GLU GLU H . n B 2 4 GLY 4 19 19 GLY GLY H . n B 2 5 SER 5 20 20 SER SER H . n B 2 6 ASP 6 21 21 ASP ASP H . n B 2 7 ALA 7 22 22 ALA ALA H . n B 2 8 GLU 8 23 23 GLU GLU H . n B 2 9 ILE 9 24 24 ILE ILE H . n B 2 10 GLY 10 25 25 GLY GLY H . n B 2 11 MET 11 26 26 MET MET H . n B 2 12 SER 12 27 27 SER SER H . n B 2 13 PRO 13 28 28 PRO PRO H . n B 2 14 TRP 14 29 29 TRP TRP H . n B 2 15 GLN 15 30 30 GLN GLN H . n B 2 16 VAL 16 31 31 VAL VAL H . n B 2 17 MET 17 32 32 MET MET H . n B 2 18 LEU 18 33 33 LEU LEU H . n B 2 19 PHE 19 34 34 PHE PHE H . n B 2 20 ARG 20 35 35 ARG ARG H . n B 2 21 LYS 21 36 36 LYS LYS H . n B 2 22 SER 22 36 36 SER SER H A n B 2 23 PRO 23 37 37 PRO PRO H . n B 2 24 GLN 24 38 38 GLN GLN H . n B 2 25 GLU 25 39 39 GLU GLU H . n B 2 26 LEU 26 40 40 LEU LEU H . n B 2 27 LEU 27 41 41 LEU LEU H . n B 2 28 CYS 28 42 42 CYS CYS H . n B 2 29 GLY 29 43 43 GLY GLY H . n B 2 30 ALA 30 44 44 ALA ALA H . n B 2 31 SER 31 45 45 SER SER H . n B 2 32 LEU 32 46 46 LEU LEU H . n B 2 33 ILE 33 47 47 ILE ILE H . n B 2 34 SER 34 48 48 SER SER H . n B 2 35 ASP 35 49 49 ASP ASP H . n B 2 36 ARG 36 50 50 ARG ARG H . n B 2 37 TRP 37 51 51 TRP TRP H . n B 2 38 VAL 38 52 52 VAL VAL H . n B 2 39 LEU 39 53 53 LEU LEU H . n B 2 40 THR 40 54 54 THR THR H . n B 2 41 ALA 41 55 55 ALA ALA H . n B 2 42 ALA 42 56 56 ALA ALA H . n B 2 43 HIS 43 57 57 HIS HIS H . n B 2 44 CYS 44 58 58 CYS CYS H . n B 2 45 LEU 45 59 59 LEU LEU H . n B 2 46 LEU 46 60 60 LEU LEU H . n B 2 47 TYR 47 60 60 TYR TYR H A n B 2 48 PRO 48 60 60 PRO PRO H B n B 2 49 PRO 49 60 60 PRO PRO H C n B 2 50 TRP 50 60 60 TRP TRP H D n B 2 51 ASP 51 60 60 ASP ASP H E n B 2 52 LYS 52 60 60 LYS LYS H F n B 2 53 ASN 53 60 60 ASN ASN H G n B 2 54 PHE 54 60 60 PHE PHE H H n B 2 55 THR 55 60 60 THR THR H I n B 2 56 GLU 56 61 61 GLU GLU H . n B 2 57 ASN 57 62 62 ASN ASN H . n B 2 58 ASP 58 63 63 ASP ASP H . n B 2 59 LEU 59 64 64 LEU LEU H . n B 2 60 LEU 60 65 65 LEU LEU H . n B 2 61 VAL 61 66 66 VAL VAL H . n B 2 62 ARG 62 67 67 ARG ARG H . n B 2 63 ILE 63 68 68 ILE ILE H . n B 2 64 GLY 64 69 69 GLY GLY H . n B 2 65 LYS 65 70 70 LYS LYS H . n B 2 66 HIS 66 71 71 HIS HIS H . n B 2 67 SER 67 72 72 SER SER H . n B 2 68 ARG 68 73 73 ARG ARG H . n B 2 69 THR 69 74 74 THR THR H . n B 2 70 ARG 70 75 75 ARG ARG H . n B 2 71 TYR 71 76 76 TYR TYR H . n B 2 72 GLU 72 77 77 GLU GLU H . n B 2 73 ARG 73 77 77 ARG ARG H A n B 2 74 ASN 74 78 78 ASN ASN H . n B 2 75 ILE 75 79 79 ILE ILE H . n B 2 76 GLU 76 80 80 GLU GLU H . n B 2 77 LYS 77 81 81 LYS LYS H . n B 2 78 ILE 78 82 82 ILE ILE H . n B 2 79 SER 79 83 83 SER SER H . n B 2 80 MET 80 84 84 MET MET H . n B 2 81 LEU 81 85 85 LEU LEU H . n B 2 82 GLU 82 86 86 GLU GLU H . n B 2 83 LYS 83 87 87 LYS LYS H . n B 2 84 ILE 84 88 88 ILE ILE H . n B 2 85 TYR 85 89 89 TYR TYR H . n B 2 86 ILE 86 90 90 ILE ILE H . n B 2 87 HIS 87 91 91 HIS HIS H . n B 2 88 PRO 88 92 92 PRO PRO H . n B 2 89 ARG 89 93 93 ARG ARG H . n B 2 90 TYR 90 94 94 TYR TYR H . n B 2 91 ASN 91 95 95 ASN ASN H . n B 2 92 TRP 92 96 96 TRP TRP H . n B 2 93 ARG 93 97 97 ARG ARG H . n B 2 94 GLU 94 97 97 GLU GLU H A n B 2 95 ASN 95 98 98 ASN ASN H . n B 2 96 LEU 96 99 99 LEU LEU H . n B 2 97 ASP 97 100 100 ASP ASP H . n B 2 98 ARG 98 101 101 ARG ARG H . n B 2 99 ASP 99 102 102 ASP ASP H . n B 2 100 ILE 100 103 103 ILE ILE H . n B 2 101 ALA 101 104 104 ALA ALA H . n B 2 102 LEU 102 105 105 LEU LEU H . n B 2 103 MET 103 106 106 MET MET H . n B 2 104 LYS 104 107 107 LYS LYS H . n B 2 105 LEU 105 108 108 LEU LEU H . n B 2 106 LYS 106 109 109 LYS LYS H . n B 2 107 LYS 107 110 110 LYS LYS H . n B 2 108 PRO 108 111 111 PRO PRO H . n B 2 109 VAL 109 112 112 VAL VAL H . n B 2 110 ALA 110 113 113 ALA ALA H . n B 2 111 PHE 111 114 114 PHE PHE H . n B 2 112 SER 112 115 115 SER SER H . n B 2 113 ASP 113 116 116 ASP ASP H . n B 2 114 TYR 114 117 117 TYR TYR H . n B 2 115 ILE 115 118 118 ILE ILE H . n B 2 116 HIS 116 119 119 HIS HIS H . n B 2 117 PRO 117 120 120 PRO PRO H . n B 2 118 VAL 118 121 121 VAL VAL H . n B 2 119 CYS 119 122 122 CYS CYS H . n B 2 120 LEU 120 123 123 LEU LEU H . n B 2 121 PRO 121 124 124 PRO PRO H . n B 2 122 ASP 122 125 125 ASP ASP H . n B 2 123 ARG 123 126 126 ARG ARG H . n B 2 124 GLU 124 127 127 GLU GLU H . n B 2 125 THR 125 128 128 THR THR H . n B 2 126 ALA 126 129 129 ALA ALA H . n B 2 127 ALA 127 129 129 ALA ALA H A n B 2 128 SER 128 129 129 SER SER H B n B 2 129 LEU 129 129 129 LEU LEU H C n B 2 130 LEU 130 130 130 LEU LEU H . n B 2 131 GLN 131 131 131 GLN GLN H . n B 2 132 ALA 132 132 132 ALA ALA H . n B 2 133 GLY 133 133 133 GLY GLY H . n B 2 134 TYR 134 134 134 TYR TYR H . n B 2 135 LYS 135 135 135 LYS LYS H . n B 2 136 GLY 136 136 136 GLY GLY H . n B 2 137 ARG 137 137 137 ARG ARG H . n B 2 138 VAL 138 138 138 VAL VAL H . n B 2 139 THR 139 139 139 THR THR H . n B 2 140 GLY 140 140 140 GLY GLY H . n B 2 141 TRP 141 141 141 TRP TRP H . n B 2 142 GLY 142 142 142 GLY GLY H . n B 2 143 ASN 143 143 143 ASN ASN H . n B 2 144 LEU 144 144 144 LEU LEU H . n B 2 145 LYS 145 145 145 LYS LYS H . n B 2 146 GLU 146 146 146 GLU GLU H . n B 2 147 THR 147 147 147 THR THR H . n B 2 148 TRP 148 148 148 TRP TRP H . n B 2 149 THR 149 149 149 THR THR H . n B 2 150 ALA 150 149 149 ALA ALA H A n B 2 151 ASN 151 149 149 ASN ASN H B n B 2 152 VAL 152 149 149 VAL VAL H C n B 2 153 GLY 153 149 149 GLY GLY H D n B 2 154 LYS 154 149 149 LYS LYS H E n B 2 155 GLY 155 150 150 GLY GLY H . n B 2 156 GLN 156 151 151 GLN GLN H . n B 2 157 PRO 157 152 152 PRO PRO H . n B 2 158 SER 158 153 153 SER SER H . n B 2 159 VAL 159 154 154 VAL VAL H . n B 2 160 LEU 160 155 155 LEU LEU H . n B 2 161 GLN 161 156 156 GLN GLN H . n B 2 162 VAL 162 157 157 VAL VAL H . n B 2 163 VAL 163 158 158 VAL VAL H . n B 2 164 ASN 164 159 159 ASN ASN H . n B 2 165 LEU 165 160 160 LEU LEU H . n B 2 166 PRO 166 161 161 PRO PRO H . n B 2 167 ILE 167 162 162 ILE ILE H . n B 2 168 VAL 168 163 163 VAL VAL H . n B 2 169 GLU 169 164 164 GLU GLU H . n B 2 170 ARG 170 165 165 ARG ARG H . n B 2 171 PRO 171 166 166 PRO PRO H . n B 2 172 VAL 172 167 167 VAL VAL H . n B 2 173 CYS 173 168 168 CYS CYS H . n B 2 174 LYS 174 169 169 LYS LYS H . n B 2 175 ASP 175 170 170 ASP ASP H . n B 2 176 SER 176 171 171 SER SER H . n B 2 177 THR 177 172 172 THR THR H . n B 2 178 ARG 178 173 173 ARG ARG H . n B 2 179 ILE 179 174 174 ILE ILE H . n B 2 180 ARG 180 175 175 ARG ARG H . n B 2 181 ILE 181 176 176 ILE ILE H . n B 2 182 THR 182 177 177 THR THR H . n B 2 183 ASP 183 178 178 ASP ASP H . n B 2 184 ASN 184 179 179 ASN ASN H . n B 2 185 MET 185 180 180 MET MET H . n B 2 186 PHE 186 181 181 PHE PHE H . n B 2 187 CYS 187 182 182 CYS CYS H . n B 2 188 ALA 188 183 183 ALA ALA H . n B 2 189 GLY 189 184 184 GLY GLY H . n B 2 190 TYR 190 184 184 TYR TYR H A n B 2 191 LYS 191 185 185 LYS LYS H . n B 2 192 PRO 192 186 186 PRO PRO H . n B 2 193 ASP 193 186 186 ASP ASP H A n B 2 194 GLU 194 186 186 GLU GLU H B n B 2 195 GLY 195 186 186 GLY GLY H C n B 2 196 LYS 196 186 186 LYS LYS H D n B 2 197 ARG 197 187 187 ARG ARG H . n B 2 198 GLY 198 188 188 GLY GLY H . n B 2 199 ASP 199 189 189 ASP ASP H . n B 2 200 ALA 200 190 190 ALA ALA H . n B 2 201 CYS 201 191 191 CYS CYS H . n B 2 202 GLU 202 192 192 GLU GLU H . n B 2 203 GLY 203 193 193 GLY GLY H . n B 2 204 ASP 204 194 194 ASP ASP H . n B 2 205 SER 205 195 195 SER SER H . n B 2 206 GLY 206 196 196 GLY GLY H . n B 2 207 GLY 207 197 197 GLY GLY H . n B 2 208 PRO 208 198 198 PRO PRO H . n B 2 209 PHE 209 199 199 PHE PHE H . n B 2 210 VAL 210 200 200 VAL VAL H . n B 2 211 MET 211 201 201 MET MET H . n B 2 212 LYS 212 202 202 LYS LYS H . n B 2 213 SER 213 203 203 SER SER H . n B 2 214 PRO 214 204 204 PRO PRO H . n B 2 215 PHE 215 204 204 PHE PHE H A n B 2 216 ASN 216 204 204 ASN ASN H B n B 2 217 ASN 217 205 205 ASN ASN H . n B 2 218 ARG 218 206 206 ARG ARG H . n B 2 219 TRP 219 207 207 TRP TRP H . n B 2 220 TYR 220 208 208 TYR TYR H . n B 2 221 GLN 221 209 209 GLN GLN H . n B 2 222 MET 222 210 210 MET MET H . n B 2 223 GLY 223 211 211 GLY GLY H . n B 2 224 ILE 224 212 212 ILE ILE H . n B 2 225 VAL 225 213 213 VAL VAL H . n B 2 226 SER 226 214 214 SER SER H . n B 2 227 TRP 227 215 215 TRP TRP H . n B 2 228 GLY 228 216 216 GLY GLY H . n B 2 229 GLU 229 217 217 GLU GLU H . n B 2 230 GLY 230 219 219 GLY GLY H . n B 2 231 CYS 231 220 220 CYS CYS H . n B 2 232 ASP 232 221 221 ASP ASP H . n B 2 233 ARG 233 221 221 ARG ARG H A n B 2 234 ASP 234 222 222 ASP ASP H . n B 2 235 GLY 235 223 223 GLY GLY H . n B 2 236 LYS 236 224 224 LYS LYS H . n B 2 237 TYR 237 225 225 TYR TYR H . n B 2 238 GLY 238 226 226 GLY GLY H . n B 2 239 PHE 239 227 227 PHE PHE H . n B 2 240 TYR 240 228 228 TYR TYR H . n B 2 241 THR 241 229 229 THR THR H . n B 2 242 HIS 242 230 230 HIS HIS H . n B 2 243 VAL 243 231 231 VAL VAL H . n B 2 244 PHE 244 232 232 PHE PHE H . n B 2 245 ARG 245 233 233 ARG ARG H . n B 2 246 LEU 246 234 234 LEU LEU H . n B 2 247 LYS 247 235 235 LYS LYS H . n B 2 248 LYS 248 236 236 LYS LYS H . n B 2 249 TRP 249 237 237 TRP TRP H . n B 2 250 ILE 250 238 238 ILE ILE H . n B 2 251 GLN 251 239 239 GLN GLN H . n B 2 252 LYS 252 240 240 LYS LYS H . n B 2 253 VAL 253 241 241 VAL VAL H . n B 2 254 ILE 254 242 242 ILE ILE H . n B 2 255 ASP 255 243 243 ASP ASP H . n B 2 256 GLN 256 244 244 GLN GLN H . n B 2 257 PHE 257 245 245 PHE PHE H . n B 2 258 GLY 258 246 ? ? ? H . n B 2 259 GLU 259 247 ? ? ? H . n C 3 1 ASP 1 55 55 ASP ASP J . n C 3 2 PHE 2 56 56 PHE PHE J . n C 3 3 GLU 3 57 57 GLU GLU J . n C 3 4 GLU 4 58 58 GLU GLU J . n C 3 5 ILE 5 59 59 ILE ILE J . n C 3 6 PRO 6 60 60 PRO PRO J . n C 3 7 GLU 7 61 61 GLU GLU J . n C 3 8 GLU 8 62 62 GLU GLU J . n C 3 9 TYS 9 63 63 TYS TYS J . n C 3 10 LEU 10 64 64 LEU LEU J . n C 3 11 GLN 11 65 65 GLN GLN J . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 0G6 1 1 1 0G6 DPN H . E 5 NAG 1 250 250 NAG NAG H . F 6 HOH 1 15 15 HOH HOH L . F 6 HOH 2 34 34 HOH HOH L . F 6 HOH 3 55 55 HOH HOH L . G 6 HOH 1 251 251 HOH HOH H . G 6 HOH 2 252 252 HOH HOH H . G 6 HOH 3 253 253 HOH HOH H . G 6 HOH 4 254 254 HOH HOH H . G 6 HOH 5 255 255 HOH HOH H . G 6 HOH 6 256 256 HOH HOH H . G 6 HOH 7 257 257 HOH HOH H . G 6 HOH 8 258 258 HOH HOH H . G 6 HOH 9 259 259 HOH HOH H . G 6 HOH 10 260 260 HOH HOH H . G 6 HOH 11 261 261 HOH HOH H . G 6 HOH 12 262 262 HOH HOH H . G 6 HOH 13 263 263 HOH HOH H . G 6 HOH 14 264 264 HOH HOH H . G 6 HOH 15 265 265 HOH HOH H . G 6 HOH 16 266 266 HOH HOH H . G 6 HOH 17 267 267 HOH HOH H . G 6 HOH 18 268 268 HOH HOH H . G 6 HOH 19 269 269 HOH HOH H . G 6 HOH 20 270 270 HOH HOH H . G 6 HOH 21 271 271 HOH HOH H . G 6 HOH 22 272 272 HOH HOH H . G 6 HOH 23 273 273 HOH HOH H . G 6 HOH 24 274 274 HOH HOH H . G 6 HOH 25 275 275 HOH HOH H . G 6 HOH 26 276 276 HOH HOH H . G 6 HOH 27 277 277 HOH HOH H . G 6 HOH 28 278 278 HOH HOH H . G 6 HOH 29 279 279 HOH HOH H . G 6 HOH 30 280 280 HOH HOH H . G 6 HOH 31 281 281 HOH HOH H . G 6 HOH 32 282 282 HOH HOH H . G 6 HOH 33 283 283 HOH HOH H . G 6 HOH 34 284 284 HOH HOH H . G 6 HOH 35 285 285 HOH HOH H . G 6 HOH 36 286 286 HOH HOH H . G 6 HOH 37 287 287 HOH HOH H . G 6 HOH 38 288 288 HOH HOH H . G 6 HOH 39 289 289 HOH HOH H . G 6 HOH 40 290 290 HOH HOH H . G 6 HOH 41 291 291 HOH HOH H . G 6 HOH 42 292 292 HOH HOH H . G 6 HOH 43 293 293 HOH HOH H . G 6 HOH 44 294 294 HOH HOH H . G 6 HOH 45 295 295 HOH HOH H . G 6 HOH 46 296 296 HOH HOH H . G 6 HOH 47 297 297 HOH HOH H . G 6 HOH 48 298 298 HOH HOH H . G 6 HOH 49 299 299 HOH HOH H . G 6 HOH 50 300 300 HOH HOH H . G 6 HOH 51 301 301 HOH HOH H . G 6 HOH 52 302 302 HOH HOH H . G 6 HOH 53 303 303 HOH HOH H . G 6 HOH 54 304 304 HOH HOH H . G 6 HOH 55 305 305 HOH HOH H . G 6 HOH 56 306 306 HOH HOH H . G 6 HOH 57 307 307 HOH HOH H . G 6 HOH 58 308 308 HOH HOH H . G 6 HOH 59 309 309 HOH HOH H . G 6 HOH 60 310 310 HOH HOH H . G 6 HOH 61 311 311 HOH HOH H . G 6 HOH 62 312 312 HOH HOH H . G 6 HOH 63 313 313 HOH HOH H . G 6 HOH 64 314 314 HOH HOH H . G 6 HOH 65 315 315 HOH HOH H . G 6 HOH 66 316 316 HOH HOH H . G 6 HOH 67 317 317 HOH HOH H . G 6 HOH 68 318 318 HOH HOH H . G 6 HOH 69 319 319 HOH HOH H . # _pdbx_molecule_features.prd_id PRD_000020 _pdbx_molecule_features.name D-Phe-Pro-Arg-CH2Cl _pdbx_molecule_features.type Peptide-like _pdbx_molecule_features.class Inhibitor _pdbx_molecule_features.details ? # _pdbx_molecule.instance_id 1 _pdbx_molecule.prd_id PRD_000020 _pdbx_molecule.asym_id D # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 B ASN 53 H ASN 60 G ASN 'GLYCOSYLATION SITE' 2 C TYS 9 J TYS 63 ? TYR O-SULFO-L-TYROSINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 5050 ? 1 MORE -22 ? 1 'SSA (A^2)' 13200 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1994-09-30 2 'Structure model' 1 1 2008-03-07 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2012-12-12 5 'Structure model' 1 4 2013-02-27 6 'Structure model' 1 5 2013-03-13 7 'Structure model' 1 6 2017-11-29 8 'Structure model' 1 7 2020-07-29 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 8 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Atomic model' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' 5 3 'Structure model' 'Non-polymer description' 6 3 'Structure model' 'Structure summary' 7 3 'Structure model' 'Version format compliance' 8 4 'Structure model' Other 9 5 'Structure model' Other 10 6 'Structure model' Other 11 7 'Structure model' 'Derived calculations' 12 7 'Structure model' Other 13 8 'Structure model' 'Data collection' 14 8 'Structure model' 'Derived calculations' 15 8 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 7 'Structure model' pdbx_database_status 2 7 'Structure model' struct_conf 3 7 'Structure model' struct_conf_type 4 8 'Structure model' chem_comp 5 8 'Structure model' entity 6 8 'Structure model' pdbx_chem_comp_identifier 7 8 'Structure model' pdbx_entity_nonpoly 8 8 'Structure model' struct_conn 9 8 'Structure model' struct_site 10 8 'Structure model' struct_site_gen # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 7 'Structure model' '_pdbx_database_status.process_site' 2 8 'Structure model' '_chem_comp.name' 3 8 'Structure model' '_chem_comp.type' 4 8 'Structure model' '_entity.pdbx_description' 5 8 'Structure model' '_pdbx_entity_nonpoly.name' 6 8 'Structure model' '_struct_conn.pdbx_dist_value' 7 8 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 8 8 'Structure model' '_struct_conn.pdbx_ptnr1_PDB_ins_code' 9 8 'Structure model' '_struct_conn.pdbx_role' 10 8 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 11 8 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 12 8 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 13 8 'Structure model' '_struct_conn.ptnr1_label_asym_id' 14 8 'Structure model' '_struct_conn.ptnr1_label_atom_id' 15 8 'Structure model' '_struct_conn.ptnr1_label_comp_id' 16 8 'Structure model' '_struct_conn.ptnr1_label_seq_id' 17 8 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 18 8 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 19 8 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 20 8 'Structure model' '_struct_conn.ptnr2_label_asym_id' 21 8 'Structure model' '_struct_conn.ptnr2_label_atom_id' 22 8 'Structure model' '_struct_conn.ptnr2_label_comp_id' 23 8 'Structure model' '_struct_conn.ptnr2_label_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal X-PLOR 'model building' . ? 1 TNT refinement . ? 2 X-PLOR refinement . ? 3 X-PLOR phasing . ? 4 # _pdbx_database_remark.id 700 _pdbx_database_remark.text ;SHEET THE SHEET PRESENTED AS *BS1* ON SHEET RECORDS BELOW IS ACTUALLY A SIX-STRANDED BETA-BARREL. THIS IS REPRESENTED BY A SEVEN-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS ARE IDENTICAL. THE SHEET PRESENTED AS *BS2* ON SHEET RECORDS BELOW IS ACTUALLY A SEVEN-STRANDED BETA- BARREL. THIS IS REPRESENTED BY AN EIGHT-STRANDED SHEET IN WHICH THE FIRST AND SECOND TO LAST STRANDS ARE IDENTICAL. ; # _pdbx_entry_details.entry_id 1TMU _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ;THE UNBOUND FORM OF THE INHIBITOR IS D-PHE-PRO-ARG-CHLOROMETHYLKETONE. UPON REACTION WITH PROTEIN IT FORMS TWO COVALENT BONDS: 1) A COVALENT BOND TO SER 195 FORMING A HEMIKETAL AR7 AND 2) A COVALENT BOND TO NE2 OF HIS 57 ; _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 OG H SER 195 ? ? O2 H 0G6 1 ? ? 2.07 2 1 OD2 H ASP 189 ? ? O H HOH 292 ? ? 2.16 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 CD L GLU 13 ? ? OE2 L GLU 13 ? ? 1.321 1.252 0.069 0.011 N 2 1 CD L GLU 14 E ? OE1 L GLU 14 E ? 1.321 1.252 0.069 0.011 N 3 1 CD L GLU 14 H ? OE1 L GLU 14 H ? 1.336 1.252 0.084 0.011 N 4 1 CD H GLU 39 ? ? OE1 H GLU 39 ? ? 1.324 1.252 0.072 0.011 N 5 1 CD H GLU 80 ? ? OE2 H GLU 80 ? ? 1.322 1.252 0.070 0.011 N 6 1 CD H GLU 97 A ? OE1 H GLU 97 A ? 1.322 1.252 0.070 0.011 N 7 1 CD H GLU 127 ? ? OE1 H GLU 127 ? ? 1.332 1.252 0.080 0.011 N 8 1 CD H GLU 164 ? ? OE2 H GLU 164 ? ? 1.328 1.252 0.076 0.011 N 9 1 CD H GLU 192 ? ? OE1 H GLU 192 ? ? 1.320 1.252 0.068 0.011 N 10 1 CD J GLU 58 ? ? OE2 J GLU 58 ? ? 1.333 1.252 0.081 0.011 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 NE L ARG 4 ? ? CZ L ARG 4 ? ? NH1 L ARG 4 ? ? 123.80 120.30 3.50 0.50 N 2 1 NE L ARG 4 ? ? CZ L ARG 4 ? ? NH2 L ARG 4 ? ? 117.27 120.30 -3.03 0.50 N 3 1 CB L PHE 7 ? ? CG L PHE 7 ? ? CD1 L PHE 7 ? ? 125.28 120.80 4.48 0.70 N 4 1 CB H SER 27 ? ? CA H SER 27 ? ? C H SER 27 ? ? 93.65 110.10 -16.45 1.90 N 5 1 CB H SER 36 A ? CA H SER 36 A ? C H SER 36 A ? 97.13 110.10 -12.97 1.90 N 6 1 N H GLU 39 ? ? CA H GLU 39 ? ? CB H GLU 39 ? ? 96.88 110.60 -13.72 1.80 N 7 1 N H SER 45 ? ? CA H SER 45 ? ? CB H SER 45 ? ? 97.91 110.50 -12.59 1.50 N 8 1 CB H ASP 60 E ? CG H ASP 60 E ? OD2 H ASP 60 E ? 112.25 118.30 -6.05 0.90 N 9 1 CB H PHE 60 H ? CG H PHE 60 H ? CD2 H PHE 60 H ? 125.02 120.80 4.22 0.70 N 10 1 CB H LEU 64 ? ? CA H LEU 64 ? ? C H LEU 64 ? ? 94.48 110.20 -15.72 1.90 N 11 1 NE H ARG 73 ? ? CZ H ARG 73 ? ? NH1 H ARG 73 ? ? 116.68 120.30 -3.62 0.50 N 12 1 N H THR 74 ? ? CA H THR 74 ? ? CB H THR 74 ? ? 91.96 110.30 -18.34 1.90 N 13 1 CD H ARG 93 ? ? NE H ARG 93 ? ? CZ H ARG 93 ? ? 135.44 123.60 11.84 1.40 N 14 1 CB H ASP 102 ? ? CG H ASP 102 ? ? OD1 H ASP 102 ? ? 124.25 118.30 5.95 0.90 N 15 1 CB H ASP 125 ? ? CG H ASP 125 ? ? OD1 H ASP 125 ? ? 125.13 118.30 6.83 0.90 N 16 1 CB H ASP 125 ? ? CG H ASP 125 ? ? OD2 H ASP 125 ? ? 111.69 118.30 -6.61 0.90 N 17 1 CD H ARG 137 ? ? NE H ARG 137 ? ? CZ H ARG 137 ? ? 137.87 123.60 14.27 1.40 N 18 1 NE H ARG 137 ? ? CZ H ARG 137 ? ? NH1 H ARG 137 ? ? 125.20 120.30 4.90 0.50 N 19 1 NE H ARG 137 ? ? CZ H ARG 137 ? ? NH2 H ARG 137 ? ? 116.15 120.30 -4.15 0.50 N 20 1 NE H ARG 165 ? ? CZ H ARG 165 ? ? NH2 H ARG 165 ? ? 117.20 120.30 -3.10 0.50 N 21 1 CB H ASP 170 ? ? CG H ASP 170 ? ? OD1 H ASP 170 ? ? 126.14 118.30 7.84 0.90 N 22 1 CB H ASP 170 ? ? CG H ASP 170 ? ? OD2 H ASP 170 ? ? 109.98 118.30 -8.32 0.90 N 23 1 NE H ARG 175 ? ? CZ H ARG 175 ? ? NH1 H ARG 175 ? ? 116.76 120.30 -3.54 0.50 N 24 1 NE H ARG 175 ? ? CZ H ARG 175 ? ? NH2 H ARG 175 ? ? 124.54 120.30 4.24 0.50 N 25 1 N H ILE 176 ? ? CA H ILE 176 ? ? CB H ILE 176 ? ? 92.27 110.80 -18.53 2.30 N 26 1 CB H ASP 178 ? ? CG H ASP 178 ? ? OD2 H ASP 178 ? ? 112.28 118.30 -6.02 0.90 N 27 1 CB H ASP 194 ? ? CG H ASP 194 ? ? OD1 H ASP 194 ? ? 112.78 118.30 -5.52 0.90 N 28 1 CB H ARG 206 ? ? CA H ARG 206 ? ? C H ARG 206 ? ? 97.86 110.40 -12.54 2.00 N 29 1 CA H ARG 221 A ? CB H ARG 221 A ? CG H ARG 221 A ? 96.96 113.40 -16.44 2.20 N 30 1 CB H ASP 222 ? ? CG H ASP 222 ? ? OD2 H ASP 222 ? ? 123.93 118.30 5.63 0.90 N 31 1 CA J ASP 55 ? ? CB J ASP 55 ? ? CG J ASP 55 ? ? 131.89 113.40 18.49 2.20 N 32 1 CB J ASP 55 ? ? CG J ASP 55 ? ? OD1 J ASP 55 ? ? 128.54 118.30 10.24 0.90 N 33 1 CB J ASP 55 ? ? CG J ASP 55 ? ? OD2 J ASP 55 ? ? 109.06 118.30 -9.24 0.90 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 PHE L 7 ? ? -118.49 -76.07 2 1 LYS L 9 ? ? -54.38 -4.69 3 1 SER H 48 ? ? 177.68 -174.98 4 1 ASP H 60 E ? 72.74 32.54 5 1 ASN H 60 G ? -161.37 77.27 6 1 HIS H 71 ? ? -131.30 -51.29 7 1 GLU H 97 A ? -129.57 -54.11 8 1 ASP H 189 ? ? 179.25 168.01 9 1 ASN H 204 B ? -150.39 4.05 10 1 SER H 214 ? ? -126.25 -55.81 11 1 LEU J 64 ? ? -67.94 78.73 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 H LYS 81 ? CD ? B LYS 77 CD 2 1 Y 1 H LYS 81 ? CE ? B LYS 77 CE 3 1 Y 1 H LYS 81 ? NZ ? B LYS 77 NZ 4 1 Y 1 H LYS 110 ? CG ? B LYS 107 CG 5 1 Y 1 H LYS 110 ? CD ? B LYS 107 CD 6 1 Y 1 H LYS 110 ? CE ? B LYS 107 CE 7 1 Y 1 H LYS 110 ? NZ ? B LYS 107 NZ 8 1 Y 1 H LYS 149 E CG ? B LYS 154 CG 9 1 Y 1 H LYS 149 E CD ? B LYS 154 CD 10 1 Y 1 H LYS 149 E CE ? B LYS 154 CE 11 1 Y 1 H LYS 149 E NZ ? B LYS 154 NZ 12 1 Y 1 H LYS 236 ? CG ? B LYS 248 CG 13 1 Y 1 H LYS 236 ? CD ? B LYS 248 CD 14 1 Y 1 H LYS 236 ? CE ? B LYS 248 CE 15 1 Y 1 H LYS 236 ? NZ ? B LYS 248 NZ # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 H GLY 246 ? B GLY 258 2 1 Y 1 H GLU 247 ? B GLU 259 # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier NAG 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpNAcb NAG 'COMMON NAME' GMML 1.0 N-acetyl-b-D-glucopyranosamine NAG 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-GlcpNAc NAG 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 GlcNAc # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 4 'D-phenylalanyl-N-[(2S,3S)-6-{[amino(iminio)methyl]amino}-1-chloro-2-hydroxyhexan-3-yl]-L-prolinamide' 0G6 5 2-acetamido-2-deoxy-beta-D-glucopyranose NAG 6 water HOH #