HEADER DNA REPAIR 15-JUN-04 1TP4 TITLE SOLUTION STRUCTURE OF THE XPC BINDING DOMAIN OF HHR23A PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: UV EXCISION REPAIR PROTEIN RAD23 HOMOLOG A; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: XPC BINDING DOMAIN; COMPND 5 SYNONYM: HHR23A; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: RAD23A; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGEX2T KEYWDS DNA REPAIR, NER, XPC, RAD23 EXPDTA SOLUTION NMR NUMMDL 25 AUTHOR M.KAMIONKA,J.FEIGON REVDAT 3 02-MAR-22 1TP4 1 REMARK SEQADV REVDAT 2 24-FEB-09 1TP4 1 VERSN REVDAT 1 28-SEP-04 1TP4 0 JRNL AUTH M.KAMIONKA,J.FEIGON JRNL TITL STRUCTURE OF THE XPC BINDING DOMAIN OF HHR23A REVEALS JRNL TITL 2 HYDROPHOBIC PATCHES FOR PROTEIN INTERACTION JRNL REF PROTEIN SCI. V. 13 2370 2004 JRNL REFN ISSN 0961-8368 JRNL PMID 15322280 JRNL DOI 10.1110/PS.04824304 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 2.6, X-PLOR 3.1 REMARK 3 AUTHORS : BRUNGER (X-PLOR) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE STRUCTURES ARE BASED ON A TOTAL OF REMARK 3 917 NON-REDUNDANT NOE-DERIVED DISTANCE CONSTRAINTS, 82 DIHEDRAL REMARK 3 ANGLE RESTRAINTS AND 42 DISTANCE RESTRAINTS FROM HYDROGEN BONDS. REMARK 4 REMARK 4 1TP4 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-JUN-04. REMARK 100 THE DEPOSITION ID IS D_1000022810. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.3 REMARK 210 IONIC STRENGTH : 20MM SODIUM PHOSPHATE, 122MM REMARK 210 SODIUM CHLORIDE, 0.05% SODIUM REMARK 210 AZIDE REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1MM XPCB U-15N,13C, 20MM SODIUM REMARK 210 PHOSPHATE, 122MM SODIUM CHLORIDE, REMARK 210 0.05% SODIUM AZIDE REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 3D_15N REMARK 210 -SEPARATED_NOESY; E-COSY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : FELIX 2000, X-PLOR 3.1 REMARK 210 METHOD USED : DISTANCE GEOMETRY REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 25 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR REMARK 210 SPECTROSCOPY. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-25 REMARK 465 RES C SSSEQI REMARK 465 GLY A 221 REMARK 465 SER A 222 REMARK 465 ALA A 223 REMARK 465 THR A 224 REMARK 465 GLU A 225 REMARK 465 ALA A 226 REMARK 465 ALA A 227 REMARK 465 GLY A 228 REMARK 465 GLU A 229 REMARK 465 GLY A 289 REMARK 465 GLU A 290 REMARK 465 LEU A 291 REMARK 465 ALA A 292 REMARK 465 ASP A 293 REMARK 465 ILE A 294 REMARK 465 SER A 295 REMARK 465 ASP A 296 REMARK 465 VAL A 297 REMARK 465 GLU A 298 REMARK 465 GLY A 299 REMARK 465 GLU A 300 REMARK 465 VAL A 301 REMARK 465 GLY A 302 REMARK 465 ALA A 303 REMARK 465 ILE A 304 REMARK 465 GLY A 305 REMARK 465 GLU A 306 REMARK 465 GLU A 307 REMARK 465 ALA A 308 REMARK 465 PRO A 309 REMARK 465 GLN A 310 REMARK 465 MET A 311 REMARK 465 ASN A 312 REMARK 465 TYR A 313 REMARK 465 ILE A 314 REMARK 465 GLN A 315 REMARK 465 VAL A 316 REMARK 465 THR A 317 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ILE A 273 H HIS A 276 1.44 REMARK 500 O PHE A 234 H GLN A 238 1.54 REMARK 500 O PRO A 239 H ASN A 243 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASN A 251 71.40 -101.70 REMARK 500 1 PRO A 252 36.90 -73.80 REMARK 500 1 LEU A 255 171.34 50.65 REMARK 500 1 LEU A 258 -37.56 -36.76 REMARK 500 1 GLU A 265 -70.09 -38.12 REMARK 500 1 SER A 274 -37.70 -39.03 REMARK 500 1 HIS A 276 -144.02 -76.84 REMARK 500 1 GLN A 277 -67.19 86.57 REMARK 500 1 GLU A 286 121.74 -34.50 REMARK 500 2 PRO A 252 30.52 -76.88 REMARK 500 2 LEU A 255 171.65 50.84 REMARK 500 2 HIS A 276 37.65 -92.78 REMARK 500 2 ASN A 285 35.41 -90.31 REMARK 500 2 GLU A 286 91.59 -30.81 REMARK 500 3 PRO A 252 29.88 -77.48 REMARK 500 3 LEU A 255 177.02 49.22 REMARK 500 3 PRO A 256 55.71 -67.64 REMARK 500 3 GLU A 265 -71.33 -38.24 REMARK 500 3 ARG A 275 -85.45 -53.67 REMARK 500 3 HIS A 276 48.89 -82.32 REMARK 500 3 ASN A 285 37.11 -89.14 REMARK 500 3 GLU A 286 89.19 -30.63 REMARK 500 4 PRO A 252 33.50 -75.98 REMARK 500 4 LEU A 255 128.78 60.62 REMARK 500 4 PRO A 256 82.74 -38.08 REMARK 500 4 SER A 274 -31.17 -36.87 REMARK 500 4 LEU A 284 -36.85 -38.63 REMARK 500 4 ASN A 285 36.31 -89.74 REMARK 500 5 PRO A 252 30.85 -76.48 REMARK 500 5 LEU A 255 174.26 50.06 REMARK 500 5 GLU A 265 -71.64 -42.97 REMARK 500 5 ARG A 275 -71.52 -53.69 REMARK 500 5 ASN A 285 38.30 -90.99 REMARK 500 5 GLU A 286 -55.95 -26.79 REMARK 500 6 ARG A 245 -28.72 -38.62 REMARK 500 6 PRO A 252 28.24 -76.37 REMARK 500 6 LEU A 255 133.92 61.24 REMARK 500 6 PRO A 256 57.40 -61.52 REMARK 500 6 ASN A 285 32.64 -89.94 REMARK 500 7 PRO A 252 32.58 -75.51 REMARK 500 7 LEU A 255 170.10 51.86 REMARK 500 7 ASN A 285 32.24 -89.79 REMARK 500 7 GLU A 286 102.46 -32.60 REMARK 500 8 PRO A 252 34.01 -75.62 REMARK 500 8 LEU A 255 171.01 51.47 REMARK 500 8 LEU A 284 -37.43 -39.92 REMARK 500 8 ASN A 285 35.46 -89.02 REMARK 500 8 GLU A 286 106.64 -33.15 REMARK 500 9 PRO A 231 30.82 -86.62 REMARK 500 9 PRO A 252 30.68 -76.59 REMARK 500 REMARK 500 THIS ENTRY HAS 153 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL DBREF 1TP4 A 223 317 UNP P54725 RD23A_HUMAN 223 317 SEQADV 1TP4 GLY A 221 UNP P54725 CLONING ARTIFACT SEQADV 1TP4 SER A 222 UNP P54725 CLONING ARTIFACT SEQRES 1 A 97 GLY SER ALA THR GLU ALA ALA GLY GLU ASN PRO LEU GLU SEQRES 2 A 97 PHE LEU ARG ASP GLN PRO GLN PHE GLN ASN MET ARG GLN SEQRES 3 A 97 VAL ILE GLN GLN ASN PRO ALA LEU LEU PRO ALA LEU LEU SEQRES 4 A 97 GLN GLN LEU GLY GLN GLU ASN PRO GLN LEU LEU GLN GLN SEQRES 5 A 97 ILE SER ARG HIS GLN GLU GLN PHE ILE GLN MET LEU ASN SEQRES 6 A 97 GLU PRO PRO GLY GLU LEU ALA ASP ILE SER ASP VAL GLU SEQRES 7 A 97 GLY GLU VAL GLY ALA ILE GLY GLU GLU ALA PRO GLN MET SEQRES 8 A 97 ASN TYR ILE GLN VAL THR HELIX 1 1 PRO A 231 GLN A 238 1 8 HELIX 2 2 GLN A 238 ASN A 251 1 14 HELIX 3 3 ALA A 257 ASN A 266 1 10 HELIX 4 4 GLN A 268 SER A 274 1 7 HELIX 5 5 GLN A 277 ASN A 285 1 9 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1