HEADER ANTITUMOR PROTEIN/DNA 28-JUL-95 1TSR TITLE P53 CORE DOMAIN IN COMPLEX WITH DNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (5'- COMPND 3 D(*TP*TP*TP*CP*CP*TP*AP*GP*AP*CP*TP*TP*GP*CP*CP*CP*A P*AP*TP*TP*A)- COMPND 4 3'); COMPND 5 CHAIN: E; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: DNA (5'- COMPND 9 D(*AP*TP*AP*AP*TP*TP*GP*GP*GP*CP*AP*AP*GP*TP*CP*TP*A P*GP*GP*AP*A)- COMPND 10 3'); COMPND 11 CHAIN: F; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: PROTEIN (P53 TUMOR SUPPRESSOR); COMPND 15 CHAIN: A, B, C; COMPND 16 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 MOL_ID: 2; SOURCE 4 SYNTHETIC: YES; SOURCE 5 MOL_ID: 3; SOURCE 6 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 7 ORGANISM_COMMON: HUMAN; SOURCE 8 ORGANISM_TAXID: 9606; SOURCE 9 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET3D KEYWDS TUMOR SUPPRESSOR, ANTI-ONCOGENE, ANTITUMOR PROTEIN-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR Y.CHO,S.GORINA,P.JEFFREY,N.PAVLETICH REVDAT 3 14-FEB-24 1TSR 1 REMARK LINK REVDAT 2 24-FEB-09 1TSR 1 VERSN REVDAT 1 29-JAN-96 1TSR 0 JRNL AUTH Y.CHO,S.GORINA,P.D.JEFFREY,N.P.PAVLETICH JRNL TITL CRYSTAL STRUCTURE OF A P53 TUMOR SUPPRESSOR-DNA COMPLEX: JRNL TITL 2 UNDERSTANDING TUMORIGENIC MUTATIONS. JRNL REF SCIENCE V. 265 346 1994 JRNL REFN ISSN 0036-8075 JRNL PMID 8023157 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TNT REMARK 3 AUTHORS : TRONRUD,TEN EYCK,MATTHEWS REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 6.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 85.7 REMARK 3 NUMBER OF REFLECTIONS : 34275 REMARK 3 REMARK 3 USING DATA ABOVE SIGMA CUTOFF. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : 0.205 REMARK 3 R VALUE (WORKING SET) : NULL REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 USING ALL DATA, NO SIGMA CUTOFF. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : NULL REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : NULL REMARK 3 FREE R VALUE (NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4586 REMARK 3 NUCLEIC ACID ATOMS : 855 REMARK 3 HETEROGEN ATOMS : 3 REMARK 3 SOLVENT ATOMS : 384 REMARK 3 REMARK 3 WILSON B VALUE (FROM FCALC, A**2) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. RMS WEIGHT COUNT REMARK 3 BOND LENGTHS (A) : 0.011 ; NULL ; NULL REMARK 3 BOND ANGLES (DEGREES) : 2.760 ; NULL ; NULL REMARK 3 TORSION ANGLES (DEGREES) : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES (DEGREES) : NULL ; NULL ; NULL REMARK 3 TRIGONAL CARBON PLANES (A) : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES (A) : NULL ; NULL ; NULL REMARK 3 ISOTROPIC THERMAL FACTORS (A**2) : NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS (A) : NULL ; NULL ; NULL REMARK 3 REMARK 3 INCORRECT CHIRAL-CENTERS (COUNT) : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 RESTRAINT LIBRARIES. REMARK 3 STEREOCHEMISTRY : NULL REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1TSR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY NDB. REMARK 100 THE DEPOSITION ID IS D_1000176838. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 98.00 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IIC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36754 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 100.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 86.0 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : 0.05700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.65 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 58.75000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.95000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 58.75000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 33.95000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: PENTAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, F, A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG A 290 REMARK 465 LYS A 291 REMARK 465 LYS A 292 REMARK 465 GLY A 293 REMARK 465 GLU A 294 REMARK 465 PRO A 295 REMARK 465 HIS A 296 REMARK 465 HIS A 297 REMARK 465 GLU A 298 REMARK 465 LEU A 299 REMARK 465 PRO A 300 REMARK 465 PRO A 301 REMARK 465 GLY A 302 REMARK 465 SER A 303 REMARK 465 THR A 304 REMARK 465 LYS A 305 REMARK 465 ARG A 306 REMARK 465 ALA A 307 REMARK 465 LEU A 308 REMARK 465 PRO A 309 REMARK 465 ASN A 310 REMARK 465 ASN A 311 REMARK 465 THR A 312 REMARK 465 SER B 94 REMARK 465 SER B 95 REMARK 465 ARG B 290 REMARK 465 LYS B 291 REMARK 465 LYS B 292 REMARK 465 GLY B 293 REMARK 465 GLU B 294 REMARK 465 PRO B 295 REMARK 465 HIS B 296 REMARK 465 HIS B 297 REMARK 465 GLU B 298 REMARK 465 LEU B 299 REMARK 465 PRO B 300 REMARK 465 PRO B 301 REMARK 465 GLY B 302 REMARK 465 SER B 303 REMARK 465 THR B 304 REMARK 465 LYS B 305 REMARK 465 ARG B 306 REMARK 465 ALA B 307 REMARK 465 LEU B 308 REMARK 465 PRO B 309 REMARK 465 ASN B 310 REMARK 465 ASN B 311 REMARK 465 THR B 312 REMARK 465 SER C 94 REMARK 465 ARG C 290 REMARK 465 LYS C 291 REMARK 465 LYS C 292 REMARK 465 GLY C 293 REMARK 465 GLU C 294 REMARK 465 PRO C 295 REMARK 465 HIS C 296 REMARK 465 HIS C 297 REMARK 465 GLU C 298 REMARK 465 LEU C 299 REMARK 465 PRO C 300 REMARK 465 PRO C 301 REMARK 465 GLY C 302 REMARK 465 SER C 303 REMARK 465 THR C 304 REMARK 465 LYS C 305 REMARK 465 ARG C 306 REMARK 465 ALA C 307 REMARK 465 LEU C 308 REMARK 465 PRO C 309 REMARK 465 ASN C 310 REMARK 465 ASN C 311 REMARK 465 THR C 312 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER B 96 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG1 THR C 140 OE2 GLU C 198 2.05 REMARK 500 NH1 ARG B 273 OD2 ASP B 281 2.10 REMARK 500 O GLU C 224 N SER C 227 2.12 REMARK 500 OE1 GLN A 192 O HOH A 448 2.13 REMARK 500 O ASP C 186 N LEU C 188 2.16 REMARK 500 O HOH A 439 O HOH A 457 2.17 REMARK 500 O HOH A 411 O HOH B 326 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH C 351 O HOH C 351 2657 1.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DC F 10 O3' DC F 10 C3' -0.057 REMARK 500 GLU A 224 CD GLU A 224 OE2 0.068 REMARK 500 GLU A 271 CD GLU A 271 OE1 0.071 REMARK 500 GLU B 287 CD GLU B 287 OE2 0.067 REMARK 500 GLU C 204 CD GLU C 204 OE2 0.068 REMARK 500 GLU C 287 CD GLU C 287 OE2 0.069 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DT E 1 O4' - C1' - N1 ANGL. DEV. = 3.0 DEGREES REMARK 500 DT E 2 O4' - C1' - N1 ANGL. DEV. = 2.8 DEGREES REMARK 500 DT E 3 O4' - C4' - C3' ANGL. DEV. = -4.0 DEGREES REMARK 500 DT E 3 O4' - C1' - N1 ANGL. DEV. = 8.9 DEGREES REMARK 500 DT E 3 C3' - O3' - P ANGL. DEV. = 11.1 DEGREES REMARK 500 DC E 5 C3' - O3' - P ANGL. DEV. = 9.1 DEGREES REMARK 500 DA E 9 O4' - C1' - N9 ANGL. DEV. = 3.9 DEGREES REMARK 500 DC E 10 C3' - O3' - P ANGL. DEV. = -8.9 DEGREES REMARK 500 DT E 12 O4' - C1' - N1 ANGL. DEV. = 3.5 DEGREES REMARK 500 DT E 12 C3' - O3' - P ANGL. DEV. = 8.1 DEGREES REMARK 500 DC E 14 O4' - C1' - N1 ANGL. DEV. = 2.0 DEGREES REMARK 500 DC E 15 C3' - O3' - P ANGL. DEV. = 12.6 DEGREES REMARK 500 DA E 17 C3' - O3' - P ANGL. DEV. = 8.9 DEGREES REMARK 500 DA E 18 O4' - C1' - N9 ANGL. DEV. = 2.2 DEGREES REMARK 500 DT E 19 O4' - C1' - N1 ANGL. DEV. = 1.8 DEGREES REMARK 500 DA F 1 O4' - C1' - N9 ANGL. DEV. = 2.2 DEGREES REMARK 500 DT F 2 O4' - C4' - C3' ANGL. DEV. = -3.4 DEGREES REMARK 500 DT F 2 C1' - O4' - C4' ANGL. DEV. = -6.6 DEGREES REMARK 500 DT F 2 O4' - C1' - N1 ANGL. DEV. = 3.9 DEGREES REMARK 500 DT F 6 O4' - C1' - N1 ANGL. DEV. = 1.9 DEGREES REMARK 500 DG F 7 O4' - C1' - N9 ANGL. DEV. = 2.5 DEGREES REMARK 500 DG F 7 C3' - O3' - P ANGL. DEV. = 11.6 DEGREES REMARK 500 DG F 9 O4' - C1' - N9 ANGL. DEV. = 2.4 DEGREES REMARK 500 DC F 10 O4' - C1' - N1 ANGL. DEV. = 3.4 DEGREES REMARK 500 DA F 12 C3' - O3' - P ANGL. DEV. = -8.8 DEGREES REMARK 500 DG F 13 C1' - O4' - C4' ANGL. DEV. = -6.6 DEGREES REMARK 500 DG F 13 C3' - O3' - P ANGL. DEV. = 8.0 DEGREES REMARK 500 DT F 14 P - O5' - C5' ANGL. DEV. = -13.0 DEGREES REMARK 500 DC F 15 O4' - C1' - N1 ANGL. DEV. = 2.6 DEGREES REMARK 500 DT F 16 C3' - O3' - P ANGL. DEV. = 11.2 DEGREES REMARK 500 DA F 17 O4' - C1' - N9 ANGL. DEV. = 3.9 DEGREES REMARK 500 DG F 18 O4' - C1' - N9 ANGL. DEV. = 4.8 DEGREES REMARK 500 DG F 18 C3' - O3' - P ANGL. DEV. = 12.0 DEGREES REMARK 500 DG F 19 C5' - C4' - O4' ANGL. DEV. = 7.3 DEGREES REMARK 500 DG F 19 C1' - O4' - C4' ANGL. DEV. = -8.4 DEGREES REMARK 500 DG F 19 C3' - C2' - C1' ANGL. DEV. = -5.1 DEGREES REMARK 500 DG F 19 O4' - C1' - C2' ANGL. DEV. = -5.5 DEGREES REMARK 500 DG F 19 O4' - C1' - N9 ANGL. DEV. = 5.0 DEGREES REMARK 500 DA F 21 O4' - C1' - N9 ANGL. DEV. = 6.4 DEGREES REMARK 500 ASP A 148 CB - CG - OD1 ANGL. DEV. = -6.9 DEGREES REMARK 500 ARG A 158 NE - CZ - NH1 ANGL. DEV. = 4.2 DEGREES REMARK 500 ARG A 158 NE - CZ - NH2 ANGL. DEV. = -4.6 DEGREES REMARK 500 ASP A 184 CB - CG - OD2 ANGL. DEV. = -5.8 DEGREES REMARK 500 ARG A 213 CG - CD - NE ANGL. DEV. = -13.1 DEGREES REMARK 500 ARG A 213 CD - NE - CZ ANGL. DEV. = 8.9 DEGREES REMARK 500 ARG A 213 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 ARG A 213 NE - CZ - NH2 ANGL. DEV. = -4.8 DEGREES REMARK 500 ARG A 267 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG A 273 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 ARG A 280 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 82 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 184 21.69 -142.05 REMARK 500 PHE A 212 -6.05 71.94 REMARK 500 GLU A 224 104.95 -50.09 REMARK 500 VAL A 225 130.28 -18.65 REMARK 500 CYS A 242 107.40 -58.96 REMARK 500 SER B 106 -9.89 -41.29 REMARK 500 SER B 121 21.77 89.68 REMARK 500 ALA B 138 -6.91 71.05 REMARK 500 PRO B 152 -176.32 -67.82 REMARK 500 LEU B 188 -49.77 -134.02 REMARK 500 LEU B 201 2.26 -52.11 REMARK 500 PHE B 212 -16.48 68.53 REMARK 500 ARG B 213 132.74 -37.35 REMARK 500 ASN B 247 28.42 44.31 REMARK 500 ARG B 248 7.92 86.75 REMARK 500 SER B 260 -18.88 -47.92 REMARK 500 CYS B 277 51.68 72.26 REMARK 500 THR C 118 36.98 -85.30 REMARK 500 ALA C 138 -8.64 74.19 REMARK 500 HIS C 178 -70.42 -53.76 REMARK 500 ARG C 181 43.37 -96.75 REMARK 500 CYS C 182 -50.47 -172.90 REMARK 500 ASP C 186 69.94 72.12 REMARK 500 ASP C 207 102.10 -167.95 REMARK 500 THR C 211 -11.30 -143.72 REMARK 500 VAL C 225 -61.56 11.64 REMARK 500 CYS C 242 98.90 -39.27 REMARK 500 CYS C 275 -153.21 -144.08 REMARK 500 CYS C 277 71.20 66.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 1 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 176 SG REMARK 620 2 HIS A 179 ND1 107.1 REMARK 620 3 CYS A 238 SG 110.6 114.3 REMARK 620 4 CYS A 242 SG 106.8 100.7 116.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 1 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 176 SG REMARK 620 2 HIS B 179 ND1 103.0 REMARK 620 3 CYS B 238 SG 112.9 108.6 REMARK 620 4 CYS B 242 SG 106.8 109.3 115.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 1 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS C 176 SG REMARK 620 2 HIS C 179 ND1 101.9 REMARK 620 3 CYS C 238 SG 109.9 110.3 REMARK 620 4 CYS C 242 SG 113.8 98.4 120.3 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN C 1 DBREF 1TSR A 94 312 UNP P04637 P53_HUMAN 94 312 DBREF 1TSR B 94 312 UNP P04637 P53_HUMAN 94 312 DBREF 1TSR C 94 312 UNP P04637 P53_HUMAN 94 312 DBREF 1TSR E 1 21 PDB 1TSR 1TSR 1 21 DBREF 1TSR F 1 21 PDB 1TSR 1TSR 1 21 SEQRES 1 E 21 DT DT DT DC DC DT DA DG DA DC DT DT DG SEQRES 2 E 21 DC DC DC DA DA DT DT DA SEQRES 1 F 21 DA DT DA DA DT DT DG DG DG DC DA DA DG SEQRES 2 F 21 DT DC DT DA DG DG DA DA SEQRES 1 A 219 SER SER SER VAL PRO SER GLN LYS THR TYR GLN GLY SER SEQRES 2 A 219 TYR GLY PHE ARG LEU GLY PHE LEU HIS SER GLY THR ALA SEQRES 3 A 219 LYS SER VAL THR CYS THR TYR SER PRO ALA LEU ASN LYS SEQRES 4 A 219 MET PHE CYS GLN LEU ALA LYS THR CYS PRO VAL GLN LEU SEQRES 5 A 219 TRP VAL ASP SER THR PRO PRO PRO GLY THR ARG VAL ARG SEQRES 6 A 219 ALA MET ALA ILE TYR LYS GLN SER GLN HIS MET THR GLU SEQRES 7 A 219 VAL VAL ARG ARG CYS PRO HIS HIS GLU ARG CYS SER ASP SEQRES 8 A 219 SER ASP GLY LEU ALA PRO PRO GLN HIS LEU ILE ARG VAL SEQRES 9 A 219 GLU GLY ASN LEU ARG VAL GLU TYR LEU ASP ASP ARG ASN SEQRES 10 A 219 THR PHE ARG HIS SER VAL VAL VAL PRO TYR GLU PRO PRO SEQRES 11 A 219 GLU VAL GLY SER ASP CYS THR THR ILE HIS TYR ASN TYR SEQRES 12 A 219 MET CYS ASN SER SER CYS MET GLY GLY MET ASN ARG ARG SEQRES 13 A 219 PRO ILE LEU THR ILE ILE THR LEU GLU ASP SER SER GLY SEQRES 14 A 219 ASN LEU LEU GLY ARG ASN SER PHE GLU VAL ARG VAL CYS SEQRES 15 A 219 ALA CYS PRO GLY ARG ASP ARG ARG THR GLU GLU GLU ASN SEQRES 16 A 219 LEU ARG LYS LYS GLY GLU PRO HIS HIS GLU LEU PRO PRO SEQRES 17 A 219 GLY SER THR LYS ARG ALA LEU PRO ASN ASN THR SEQRES 1 B 219 SER SER SER VAL PRO SER GLN LYS THR TYR GLN GLY SER SEQRES 2 B 219 TYR GLY PHE ARG LEU GLY PHE LEU HIS SER GLY THR ALA SEQRES 3 B 219 LYS SER VAL THR CYS THR TYR SER PRO ALA LEU ASN LYS SEQRES 4 B 219 MET PHE CYS GLN LEU ALA LYS THR CYS PRO VAL GLN LEU SEQRES 5 B 219 TRP VAL ASP SER THR PRO PRO PRO GLY THR ARG VAL ARG SEQRES 6 B 219 ALA MET ALA ILE TYR LYS GLN SER GLN HIS MET THR GLU SEQRES 7 B 219 VAL VAL ARG ARG CYS PRO HIS HIS GLU ARG CYS SER ASP SEQRES 8 B 219 SER ASP GLY LEU ALA PRO PRO GLN HIS LEU ILE ARG VAL SEQRES 9 B 219 GLU GLY ASN LEU ARG VAL GLU TYR LEU ASP ASP ARG ASN SEQRES 10 B 219 THR PHE ARG HIS SER VAL VAL VAL PRO TYR GLU PRO PRO SEQRES 11 B 219 GLU VAL GLY SER ASP CYS THR THR ILE HIS TYR ASN TYR SEQRES 12 B 219 MET CYS ASN SER SER CYS MET GLY GLY MET ASN ARG ARG SEQRES 13 B 219 PRO ILE LEU THR ILE ILE THR LEU GLU ASP SER SER GLY SEQRES 14 B 219 ASN LEU LEU GLY ARG ASN SER PHE GLU VAL ARG VAL CYS SEQRES 15 B 219 ALA CYS PRO GLY ARG ASP ARG ARG THR GLU GLU GLU ASN SEQRES 16 B 219 LEU ARG LYS LYS GLY GLU PRO HIS HIS GLU LEU PRO PRO SEQRES 17 B 219 GLY SER THR LYS ARG ALA LEU PRO ASN ASN THR SEQRES 1 C 219 SER SER SER VAL PRO SER GLN LYS THR TYR GLN GLY SER SEQRES 2 C 219 TYR GLY PHE ARG LEU GLY PHE LEU HIS SER GLY THR ALA SEQRES 3 C 219 LYS SER VAL THR CYS THR TYR SER PRO ALA LEU ASN LYS SEQRES 4 C 219 MET PHE CYS GLN LEU ALA LYS THR CYS PRO VAL GLN LEU SEQRES 5 C 219 TRP VAL ASP SER THR PRO PRO PRO GLY THR ARG VAL ARG SEQRES 6 C 219 ALA MET ALA ILE TYR LYS GLN SER GLN HIS MET THR GLU SEQRES 7 C 219 VAL VAL ARG ARG CYS PRO HIS HIS GLU ARG CYS SER ASP SEQRES 8 C 219 SER ASP GLY LEU ALA PRO PRO GLN HIS LEU ILE ARG VAL SEQRES 9 C 219 GLU GLY ASN LEU ARG VAL GLU TYR LEU ASP ASP ARG ASN SEQRES 10 C 219 THR PHE ARG HIS SER VAL VAL VAL PRO TYR GLU PRO PRO SEQRES 11 C 219 GLU VAL GLY SER ASP CYS THR THR ILE HIS TYR ASN TYR SEQRES 12 C 219 MET CYS ASN SER SER CYS MET GLY GLY MET ASN ARG ARG SEQRES 13 C 219 PRO ILE LEU THR ILE ILE THR LEU GLU ASP SER SER GLY SEQRES 14 C 219 ASN LEU LEU GLY ARG ASN SER PHE GLU VAL ARG VAL CYS SEQRES 15 C 219 ALA CYS PRO GLY ARG ASP ARG ARG THR GLU GLU GLU ASN SEQRES 16 C 219 LEU ARG LYS LYS GLY GLU PRO HIS HIS GLU LEU PRO PRO SEQRES 17 C 219 GLY SER THR LYS ARG ALA LEU PRO ASN ASN THR HET ZN A 1 1 HET ZN B 1 1 HET ZN C 1 1 HETNAM ZN ZINC ION FORMUL 6 ZN 3(ZN 2+) FORMUL 9 HOH *384(H2 O) HELIX 1 1 SER A 166 HIS A 168 5 3 HELIX 2 2 PRO A 177 GLU A 180 1 4 HELIX 3 3 PRO A 278 GLU A 287 1 10 HELIX 4 4 GLN B 167 THR B 170 5 4 HELIX 5 5 PRO B 177 ARG B 181 1 5 HELIX 6 6 PRO B 278 GLU B 287 1 10 HELIX 7 7 GLY C 105 TYR C 107 5 3 HELIX 8 8 SER C 166 MET C 169 1 4 HELIX 9 9 PRO C 177 ARG C 181 1 5 HELIX 10 10 PRO C 278 GLU C 285 1 8 SHEET 1 A 4 ARG A 110 GLY A 112 0 SHEET 2 A 4 CYS A 141 TRP A 146 -1 N TRP A 146 O ARG A 110 SHEET 3 A 4 THR A 230 TYR A 236 -1 N TYR A 234 O CYS A 141 SHEET 4 A 4 ILE A 195 GLU A 198 -1 N GLU A 198 O HIS A 233 SHEET 1 B 7 CYS A 124 SER A 127 0 SHEET 2 B 7 LYS A 132 CYS A 135 -1 N PHE A 134 O THR A 125 SHEET 3 B 7 LEU A 264 VAL A 274 1 N GLU A 271 O MET A 133 SHEET 4 B 7 ILE A 251 GLU A 258 -1 N LEU A 257 O LEU A 265 SHEET 5 B 7 ARG A 156 TYR A 163 -1 N ILE A 162 O LEU A 252 SHEET 6 B 7 HIS A 214 PRO A 219 -1 N VAL A 218 O VAL A 157 SHEET 7 B 7 GLU A 204 ASP A 207 -1 N LEU A 206 O SER A 215 SHEET 1 C 4 ARG B 110 GLY B 112 0 SHEET 2 C 4 CYS B 141 TRP B 146 -1 N TRP B 146 O ARG B 110 SHEET 3 C 4 THR B 230 TYR B 236 -1 N TYR B 234 O CYS B 141 SHEET 4 C 4 ILE B 195 GLU B 198 -1 N GLU B 198 O HIS B 233 SHEET 1 D 7 CYS B 124 SER B 127 0 SHEET 2 D 7 LYS B 132 CYS B 135 -1 N PHE B 134 O THR B 125 SHEET 3 D 7 LEU B 264 VAL B 274 1 N GLU B 271 O MET B 133 SHEET 4 D 7 ILE B 251 GLU B 258 -1 N LEU B 257 O LEU B 265 SHEET 5 D 7 ARG B 156 TYR B 163 -1 N ILE B 162 O LEU B 252 SHEET 6 D 7 HIS B 214 PRO B 219 -1 N VAL B 218 O VAL B 157 SHEET 7 D 7 GLU B 204 ASP B 207 -1 N LEU B 206 O SER B 215 SHEET 1 E 4 ARG C 110 PHE C 113 0 SHEET 2 E 4 CYS C 141 TRP C 146 -1 N TRP C 146 O ARG C 110 SHEET 3 E 4 THR C 230 TYR C 236 -1 N TYR C 234 O CYS C 141 SHEET 4 E 4 ILE C 195 VAL C 197 -1 N ARG C 196 O ASN C 235 SHEET 1 F 7 THR C 125 SER C 127 0 SHEET 2 F 7 LYS C 132 GLN C 136 -1 N PHE C 134 O THR C 125 SHEET 3 F 7 LEU C 264 CYS C 275 1 N GLU C 271 O MET C 133 SHEET 4 F 7 ILE C 251 GLU C 258 -1 N LEU C 257 O LEU C 265 SHEET 5 F 7 ARG C 156 TYR C 163 -1 N ILE C 162 O LEU C 252 SHEET 6 F 7 HIS C 214 PRO C 219 -1 N VAL C 218 O VAL C 157 SHEET 7 F 7 GLU C 204 ASP C 207 -1 N LEU C 206 O SER C 215 LINK ZN ZN A 1 SG CYS A 176 1555 1555 2.32 LINK ZN ZN A 1 ND1 HIS A 179 1555 1555 2.01 LINK ZN ZN A 1 SG CYS A 238 1555 1555 2.29 LINK ZN ZN A 1 SG CYS A 242 1555 1555 2.22 LINK ZN ZN B 1 SG CYS B 176 1555 1555 2.33 LINK ZN ZN B 1 ND1 HIS B 179 1555 1555 2.05 LINK ZN ZN B 1 SG CYS B 238 1555 1555 2.21 LINK ZN ZN B 1 SG CYS B 242 1555 1555 2.24 LINK ZN ZN C 1 SG CYS C 176 1555 1555 2.38 LINK ZN ZN C 1 ND1 HIS C 179 1555 1555 2.10 LINK ZN ZN C 1 SG CYS C 238 1555 1555 2.31 LINK ZN ZN C 1 SG CYS C 242 1555 1555 2.13 SITE 1 AC1 4 CYS A 176 HIS A 179 CYS A 238 CYS A 242 SITE 1 AC2 4 CYS B 176 HIS B 179 CYS B 238 CYS B 242 SITE 1 AC3 4 CYS C 176 HIS C 179 CYS C 238 CYS C 242 CRYST1 117.500 67.900 108.800 90.00 105.50 90.00 C 1 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008511 0.000000 0.002360 0.00000 SCALE2 0.000000 0.014728 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009538 0.00000