HEADER OXIDOREDUCTASE 27-JUN-04 1TV5 TITLE PLASMODIUM FALCIPARUM DIHYDROOROTATE DEHYDROGENASE WITH A BOUND TITLE 2 INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: DIHYDROOROTATE DEHYDROGENASE HOMOLOG, MITOCHONDRIAL; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: FULLY FUNCTIONAL N-TERMINAL DELETION MUTANT; COMPND 5 SYNONYM: DIHYDROOROTATE OXIDASE; DHODEHASE; DIHYDROOROTATE COMPND 6 DEHYDROGENASE; COMPND 7 EC: 1.3.99.11, 1.3.3.1; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PLASMODIUM FALCIPARUM; SOURCE 3 ORGANISM_COMMON: MALARIA PARASITE P. FALCIPARUM; SOURCE 4 ORGANISM_TAXID: 5833; SOURCE 5 GENE: DHOD; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21-DE3; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PRSET KEYWDS ALPHA-BETA BARREL; TIM BARREL, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR D.E.HURT,J.WIDOM,J.CLARDY REVDAT 6 23-AUG-23 1TV5 1 REMARK SEQADV REVDAT 5 18-JUL-12 1TV5 1 FORMUL HETNAM REVDAT 4 13-JUL-11 1TV5 1 VERSN REVDAT 3 24-FEB-09 1TV5 1 VERSN REVDAT 2 11-NOV-08 1TV5 1 JRNL REVDAT 1 06-SEP-05 1TV5 0 JRNL AUTH D.E.HURT,J.WIDOM,J.CLARDY JRNL TITL STRUCTURE OF PLASMODIUM FALCIPARUM DIHYDROOROTATE JRNL TITL 2 DEHYDROGENASE WITH A BOUND INHIBITOR. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 62 312 2006 JRNL REFN ISSN 0907-4449 JRNL PMID 16510978 JRNL DOI 10.1107/S0907444905042642 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.48 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 2853804.460 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 97.3 REMARK 3 NUMBER OF REFLECTIONS : 21786 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.201 REMARK 3 FREE R VALUE : 0.243 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1139 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.007 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.55 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.70 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 3649 REMARK 3 BIN R VALUE (WORKING SET) : 0.2200 REMARK 3 BIN FREE R VALUE : 0.2780 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.90 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 186 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.020 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2944 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 114 REMARK 3 SOLVENT ATOMS : 212 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 32.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.70 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.78000 REMARK 3 B22 (A**2) : 3.78000 REMARK 3 B33 (A**2) : -7.56000 REMARK 3 B12 (A**2) : 2.74000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.24 REMARK 3 ESD FROM SIGMAA (A) : 0.19 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.29 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.27 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 1.400 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 21.20 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.770 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.420 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.350 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.240 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.380 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.40 REMARK 3 BSOL : 44.93 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : LIGS.PARAM REMARK 3 PARAMETER FILE 3 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : LIGS.TOP REMARK 3 TOPOLOGY FILE 3 : WATER_REP.TOP REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: SULFATE ION WAS IN A SPECIAL POSITION REMARK 3 AND COULD NOT BE REFINED REMARK 4 REMARK 4 1TV5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-JUL-04. REMARK 100 THE DEPOSITION ID IS D_1000022930. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-AUG-02 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CHESS REMARK 200 BEAMLINE : A1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9474 REMARK 200 MONOCHROMATOR : HORIZONTAL FOCUSSING, 5.05 DEG REMARK 200 ASYMMETRIC CUT SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALA, CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23068 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : 4.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07400 REMARK 200 FOR THE DATA SET : 8.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.52 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 4.70 REMARK 200 R MERGE FOR SHELL (I) : 0.32400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: RESOLVE REMARK 200 STARTING MODEL: HOMO SAPIENS DHODH, PDB ID: 1D3H REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.95 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AMMONIUM SULFATE, SODIUM ACETATE, REMARK 280 C8E5, DIHYDROOROTIC ACID, A77 1726, PH 4.3, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 52.71400 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 30.43444 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 92.21067 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 52.71400 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 30.43444 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 92.21067 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 52.71400 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 30.43444 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 92.21067 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 52.71400 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 30.43444 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 92.21067 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 52.71400 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 30.43444 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 92.21067 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 52.71400 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 30.43444 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 92.21067 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 60.86888 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 184.42133 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 60.86888 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 184.42133 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 60.86888 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 184.42133 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 60.86888 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 184.42133 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 60.86888 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 184.42133 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 60.86888 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 184.42133 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 14520 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 41300 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -136.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 105.42800 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 52.71400 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 91.30333 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 S SO4 A1006 LIES ON A SPECIAL POSITION. REMARK 375 O3 SO4 A1006 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 127 REMARK 465 ARG A 128 REMARK 465 GLY A 129 REMARK 465 SER A 130 REMARK 465 HIS A 131 REMARK 465 HIS A 132 REMARK 465 HIS A 133 REMARK 465 HIS A 134 REMARK 465 HIS A 135 REMARK 465 HIS A 136 REMARK 465 GLY A 137 REMARK 465 MET A 138 REMARK 465 ALA A 139 REMARK 465 SER A 140 REMARK 465 MET A 141 REMARK 465 THR A 142 REMARK 465 GLY A 143 REMARK 465 GLY A 144 REMARK 465 GLN A 145 REMARK 465 GLN A 146 REMARK 465 MET A 147 REMARK 465 GLY A 148 REMARK 465 ARG A 149 REMARK 465 ASP A 150 REMARK 465 LEU A 151 REMARK 465 TYR A 152 REMARK 465 ASP A 153 REMARK 465 ASP A 154 REMARK 465 ASP A 155 REMARK 465 ASP A 156 REMARK 465 LYS A 157 REMARK 465 LYS A 376 REMARK 465 ASN A 377 REMARK 465 ASN A 378 REMARK 465 ILE A 379 REMARK 465 MET A 380 REMARK 465 ASN A 381 REMARK 465 ASP A 382 REMARK 465 GLU A 383 REMARK 465 SER A 384 REMARK 465 THR A 385 REMARK 465 TYR A 386 REMARK 465 ASN A 387 REMARK 465 GLU A 388 REMARK 465 ASP A 389 REMARK 465 ASN A 390 REMARK 465 LYS A 391 REMARK 465 ILE A 392 REMARK 465 VAL A 393 REMARK 465 GLU A 394 REMARK 465 LYS A 395 REMARK 465 LYS A 396 REMARK 465 ASN A 397 REMARK 465 ASN A 398 REMARK 465 PHE A 399 REMARK 465 ASN A 400 REMARK 465 LYS A 401 REMARK 465 ASN A 402 REMARK 465 ASN A 403 REMARK 465 SER A 404 REMARK 465 HIS A 405 REMARK 465 MET A 406 REMARK 465 MET A 407 REMARK 465 LYS A 408 REMARK 465 ASP A 409 REMARK 465 ALA A 410 REMARK 465 LYS A 411 REMARK 465 ASP A 412 REMARK 465 ASN A 413 REMARK 465 SER A 567 REMARK 465 LYS A 568 REMARK 465 SER A 569 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 THR A 249 N - CA - C ANGL. DEV. = -30.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 213 -131.59 69.49 REMARK 500 ASP A 228 75.24 -119.74 REMARK 500 CYS A 233 55.00 -153.19 REMARK 500 THR A 249 78.57 116.32 REMARK 500 SER A 275 47.50 -140.54 REMARK 500 PRO A 349 122.09 -36.02 REMARK 500 ASP A 433 58.93 -91.24 REMARK 500 SER A 457 118.74 78.10 REMARK 500 ASN A 464 16.89 -144.27 REMARK 500 TYR A 528 -74.24 -145.86 REMARK 500 ARG A 564 -5.39 -56.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1006 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE A26 A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMN A 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ORO A 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE N8E A 1004 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE N8E A 1005 DBREF 1TV5 A 158 569 UNP Q08210 PYRD_PLAFA 158 569 SEQADV 1TV5 MET A 127 UNP Q08210 INSERTION SEQADV 1TV5 ARG A 128 UNP Q08210 INSERTION SEQADV 1TV5 GLY A 129 UNP Q08210 INSERTION SEQADV 1TV5 SER A 130 UNP Q08210 INSERTION SEQADV 1TV5 HIS A 131 UNP Q08210 INSERTION SEQADV 1TV5 HIS A 132 UNP Q08210 INSERTION SEQADV 1TV5 HIS A 133 UNP Q08210 INSERTION SEQADV 1TV5 HIS A 134 UNP Q08210 INSERTION SEQADV 1TV5 HIS A 135 UNP Q08210 INSERTION SEQADV 1TV5 HIS A 136 UNP Q08210 INSERTION SEQADV 1TV5 GLY A 137 UNP Q08210 INSERTION SEQADV 1TV5 MET A 138 UNP Q08210 INSERTION SEQADV 1TV5 ALA A 139 UNP Q08210 INSERTION SEQADV 1TV5 SER A 140 UNP Q08210 INSERTION SEQADV 1TV5 MET A 141 UNP Q08210 INSERTION SEQADV 1TV5 THR A 142 UNP Q08210 INSERTION SEQADV 1TV5 GLY A 143 UNP Q08210 INSERTION SEQADV 1TV5 GLY A 144 UNP Q08210 INSERTION SEQADV 1TV5 GLN A 145 UNP Q08210 INSERTION SEQADV 1TV5 GLN A 146 UNP Q08210 INSERTION SEQADV 1TV5 MET A 147 UNP Q08210 INSERTION SEQADV 1TV5 GLY A 148 UNP Q08210 INSERTION SEQADV 1TV5 ARG A 149 UNP Q08210 INSERTION SEQADV 1TV5 ASP A 150 UNP Q08210 INSERTION SEQADV 1TV5 LEU A 151 UNP Q08210 INSERTION SEQADV 1TV5 TYR A 152 UNP Q08210 INSERTION SEQADV 1TV5 ASP A 153 UNP Q08210 INSERTION SEQADV 1TV5 ASP A 154 UNP Q08210 INSERTION SEQADV 1TV5 ASP A 155 UNP Q08210 INSERTION SEQADV 1TV5 ASP A 156 UNP Q08210 INSERTION SEQADV 1TV5 LYS A 157 UNP Q08210 INSERTION SEQRES 1 A 443 MET ARG GLY SER HIS HIS HIS HIS HIS HIS GLY MET ALA SEQRES 2 A 443 SER MET THR GLY GLY GLN GLN MET GLY ARG ASP LEU TYR SEQRES 3 A 443 ASP ASP ASP ASP LYS PHE GLU SER TYR ASN PRO GLU PHE SEQRES 4 A 443 PHE LEU TYR ASP ILE PHE LEU LYS PHE CYS LEU LYS TYR SEQRES 5 A 443 ILE ASP GLY GLU ILE CYS HIS ASP LEU PHE LEU LEU LEU SEQRES 6 A 443 GLY LYS TYR ASN ILE LEU PRO TYR ASP THR SER ASN ASP SEQRES 7 A 443 SER ILE TYR ALA CYS THR ASN ILE LYS HIS LEU ASP PHE SEQRES 8 A 443 ILE ASN PRO PHE GLY VAL ALA ALA GLY PHE ASP LYS ASN SEQRES 9 A 443 GLY VAL CYS ILE ASP SER ILE LEU LYS LEU GLY PHE SER SEQRES 10 A 443 PHE ILE GLU ILE GLY THR ILE THR PRO ARG GLY GLN THR SEQRES 11 A 443 GLY ASN ALA LYS PRO ARG ILE PHE ARG ASP VAL GLU SER SEQRES 12 A 443 ARG SER ILE ILE ASN SER CYS GLY PHE ASN ASN MET GLY SEQRES 13 A 443 CYS ASP LYS VAL THR GLU ASN LEU ILE LEU PHE ARG LYS SEQRES 14 A 443 ARG GLN GLU GLU ASP LYS LEU LEU SER LYS HIS ILE VAL SEQRES 15 A 443 GLY VAL SER ILE GLY LYS ASN LYS ASP THR VAL ASN ILE SEQRES 16 A 443 VAL ASP ASP LEU LYS TYR CYS ILE ASN LYS ILE GLY ARG SEQRES 17 A 443 TYR ALA ASP TYR ILE ALA ILE ASN VAL SER SER PRO ASN SEQRES 18 A 443 THR PRO GLY LEU ARG ASP ASN GLN GLU ALA GLY LYS LEU SEQRES 19 A 443 LYS ASN ILE ILE LEU SER VAL LYS GLU GLU ILE ASP ASN SEQRES 20 A 443 LEU GLU LYS ASN ASN ILE MET ASN ASP GLU SER THR TYR SEQRES 21 A 443 ASN GLU ASP ASN LYS ILE VAL GLU LYS LYS ASN ASN PHE SEQRES 22 A 443 ASN LYS ASN ASN SER HIS MET MET LYS ASP ALA LYS ASP SEQRES 23 A 443 ASN PHE LEU TRP PHE ASN THR THR LYS LYS LYS PRO LEU SEQRES 24 A 443 VAL PHE VAL LYS LEU ALA PRO ASP LEU ASN GLN GLU GLN SEQRES 25 A 443 LYS LYS GLU ILE ALA ASP VAL LEU LEU GLU THR ASN ILE SEQRES 26 A 443 ASP GLY MET ILE ILE SER ASN THR THR THR GLN ILE ASN SEQRES 27 A 443 ASP ILE LYS SER PHE GLU ASN LYS LYS GLY GLY VAL SER SEQRES 28 A 443 GLY ALA LYS LEU LYS ASP ILE SER THR LYS PHE ILE CYS SEQRES 29 A 443 GLU MET TYR ASN TYR THR ASN LYS GLN ILE PRO ILE ILE SEQRES 30 A 443 ALA SER GLY GLY ILE PHE SER GLY LEU ASP ALA LEU GLU SEQRES 31 A 443 LYS ILE GLU ALA GLY ALA SER VAL CYS GLN LEU TYR SER SEQRES 32 A 443 CYS LEU VAL PHE ASN GLY MET LYS SER ALA VAL GLN ILE SEQRES 33 A 443 LYS ARG GLU LEU ASN HIS LEU LEU TYR GLN ARG GLY TYR SEQRES 34 A 443 TYR ASN LEU LYS GLU ALA ILE GLY ARG LYS HIS SER LYS SEQRES 35 A 443 SER HET SO4 A1006 5 HET A26 A1001 19 HET FMN A1002 31 HET ORO A1003 11 HET N8E A1004 24 HET N8E A1005 24 HETNAM SO4 SULFATE ION HETNAM A26 (2Z)-2-CYANO-3-HYDROXY-N-[4-(TRIFLUOROMETHYL) HETNAM 2 A26 PHENYL]BUT-2-ENAMIDE HETNAM FMN FLAVIN MONONUCLEOTIDE HETNAM ORO OROTIC ACID HETNAM N8E 3,6,9,12,15-PENTAOXATRICOSAN-1-OL HETSYN A26 ANTIPROLIFERATIVE AGENT A771726 HETSYN FMN RIBOFLAVIN MONOPHOSPHATE HETSYN N8E N-OCTYLPENTAOXYETHYLENE; PENTAETHYLENE GLYCOL MONOOCTYL HETSYN 2 N8E ETHER; OCTYLPENTAGLYCOL N-OCTYLPENTAOXYETHYLENE FORMUL 2 SO4 O4 S 2- FORMUL 3 A26 C12 H9 F3 N2 O2 FORMUL 4 FMN C17 H21 N4 O9 P FORMUL 5 ORO C5 H4 N2 O4 FORMUL 6 N8E 2(C18 H38 O6) FORMUL 8 HOH *212(H2 O) HELIX 1 1 PHE A 165 ILE A 179 1 15 HELIX 2 2 ASP A 180 TYR A 194 1 15 HELIX 3 3 SER A 205 CYS A 209 5 5 HELIX 4 4 CYS A 233 LYS A 239 1 7 HELIX 5 5 GLY A 282 ASP A 300 1 19 HELIX 6 6 ASN A 320 GLY A 333 1 14 HELIX 7 7 ARG A 334 ALA A 336 5 3 HELIX 8 8 GLY A 350 GLN A 355 5 6 HELIX 9 9 GLU A 356 GLU A 375 1 20 HELIX 10 10 ASN A 435 THR A 449 1 15 HELIX 11 11 ILE A 466 GLU A 470 5 5 HELIX 12 12 LEU A 481 THR A 496 1 16 HELIX 13 13 SER A 510 ALA A 520 1 11 HELIX 14 14 TYR A 528 GLY A 535 1 8 HELIX 15 15 LYS A 537 GLY A 554 1 18 HELIX 16 16 LEU A 558 ILE A 562 5 5 SHEET 1 A 2 THR A 210 ILE A 212 0 SHEET 2 A 2 LEU A 215 PHE A 217 -1 O PHE A 217 N THR A 210 SHEET 1 B 9 PHE A 221 VAL A 223 0 SHEET 2 B 9 PHE A 244 ILE A 250 1 O GLU A 246 N VAL A 223 SHEET 3 B 9 ILE A 307 ILE A 312 1 O GLY A 309 N ILE A 245 SHEET 4 B 9 TYR A 338 ASN A 342 1 O ALA A 340 N ILE A 312 SHEET 5 B 9 LEU A 425 LEU A 430 1 O PHE A 427 N ILE A 339 SHEET 6 B 9 GLY A 453 ILE A 456 1 O ILE A 455 N VAL A 428 SHEET 7 B 9 ILE A 502 SER A 505 1 O ILE A 503 N MET A 454 SHEET 8 B 9 ALA A 522 LEU A 527 1 O VAL A 524 N ALA A 504 SHEET 9 B 9 PHE A 221 VAL A 223 1 N GLY A 222 O LEU A 527 SHEET 1 C 3 ILE A 263 ASP A 266 0 SHEET 2 C 3 SER A 271 ASN A 274 -1 O ILE A 273 N PHE A 264 SHEET 3 C 3 GLY A 475 GLY A 478 -1 O SER A 477 N ILE A 272 SSBOND 1 CYS A 175 CYS A 184 1555 1555 2.34 CISPEP 1 LYS A 260 PRO A 261 0 -0.24 SITE 1 AC1 2 LYS A 193 TYR A 194 SITE 1 AC2 12 PHE A 171 LEU A 172 GLY A 181 CYS A 184 SITE 2 AC2 12 HIS A 185 PHE A 188 ILE A 263 ARG A 265 SITE 3 AC2 12 TYR A 528 VAL A 532 GLY A 535 MET A 536 SITE 1 AC3 25 ALA A 224 ALA A 225 GLY A 226 LYS A 229 SITE 2 AC3 25 GLY A 248 THR A 249 ILE A 263 ILE A 272 SITE 3 AC3 25 ASN A 274 ASN A 342 LYS A 429 SER A 457 SITE 4 AC3 25 SER A 477 GLY A 478 LEU A 481 SER A 505 SITE 5 AC3 25 GLY A 506 GLY A 507 TYR A 528 SER A 529 SITE 6 AC3 25 ORO A1003 HOH A1009 HOH A1011 HOH A1014 SITE 7 AC3 25 HOH A1031 SITE 1 AC4 11 LYS A 229 ASN A 274 CYS A 276 GLY A 277 SITE 2 AC4 11 PHE A 278 ASN A 342 SER A 345 ASN A 347 SITE 3 AC4 11 ASN A 458 THR A 459 FMN A1002 SITE 1 AC5 5 ASP A 169 LEU A 172 LYS A 173 TYR A 551 SITE 2 AC5 5 GLY A 554 SITE 1 AC6 5 ILE A 170 PHE A 171 PHE A 174 LEU A 187 SITE 2 AC6 5 ILE A 196 CRYST1 105.428 105.428 276.632 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009485 0.005476 0.000000 0.00000 SCALE2 0.000000 0.010953 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003615 0.00000