HEADER PENICILLIN BINDING 29-JUN-04 1TVF TITLE CRYSTAL STRUCTURE OF PENICILLIN-BINDING PROTEIN 4 (PBP4) FROM TITLE 2 STAPHYLOCOCCUS AUREUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: PENICILLIN BINDING PROTEIN 4; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: PBP4; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS; SOURCE 3 ORGANISM_TAXID: 1280; SOURCE 4 GENE: PBP4; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21DE3; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET T7 KEYWDS STRUCTURAL GENOMICS, NYSGXRC TARGET, T72, PBP4, SAV0642, SA0598, PSI, KEYWDS 2 PROTEIN STRUCTURE INITIATIVE, NEW YORK SGX RESEARCH CENTER FOR KEYWDS 3 STRUCTURAL GENOMICS, PENICILLIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR K.R.RAJASHANKAR,S.S.RAY,J.B.BONANNO,M.PINHO,A.TOMASZ,S.K.BURLEY,NEW AUTHOR 2 YORK SGX RESEARCH CENTER FOR STRUCTURAL GENOMICS (NYSGXRC) REVDAT 6 23-AUG-23 1TVF 1 REMARK REVDAT 5 03-FEB-21 1TVF 1 AUTHOR JRNL REMARK SEQADV REVDAT 4 24-FEB-09 1TVF 1 VERSN REVDAT 3 05-APR-05 1TVF 1 AUTHOR JRNL REVDAT 2 25-JAN-05 1TVF 1 AUTHOR KEYWDS REMARK REVDAT 1 06-JUL-04 1TVF 0 JRNL AUTH K.R.RAJASHANKAR,S.S.RAY,J.B.BONANNO,M.PINHO,A.TOMASZ, JRNL AUTH 2 S.K.BURLEY JRNL TITL CRYSTAL STRUCTURE OF PENICILLIN-BINDING PROTEIN 4 (PBP4) JRNL TITL 2 FROM STAPHYLOCOCCUS AUREUS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 23.68 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 425919.560 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 98.4 REMARK 3 NUMBER OF REFLECTIONS : 67366 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.166 REMARK 3 FREE R VALUE : 0.205 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3423 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.003 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.13 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.20 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 10502 REMARK 3 BIN R VALUE (WORKING SET) : 0.1870 REMARK 3 BIN FREE R VALUE : 0.2280 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.00 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 548 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.010 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5796 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 43 REMARK 3 SOLVENT ATOMS : 781 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 9.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.66000 REMARK 3 B22 (A**2) : 2.23000 REMARK 3 B33 (A**2) : 1.43000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.17 REMARK 3 ESD FROM SIGMAA (A) : 0.11 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.22 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.15 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.024 REMARK 3 BOND ANGLES (DEGREES) : 2.100 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 23.80 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.370 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.280 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 1.810 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.250 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.090 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.37 REMARK 3 BSOL : 54.87 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : CIS_PEPTIDE.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : ION.TOP REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: UNIDENTIFIED ELECTRON DENSITY IS REMARK 3 OBSERVED NEAR THE ACTIVE SITE. REMARK 4 REMARK 4 1TVF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-JUN-04. REMARK 100 THE DEPOSITION ID IS D_1000022939. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-OCT-01; NULL REMARK 200 TEMPERATURE (KELVIN) : 100; 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : NSLS; NSLS REMARK 200 BEAMLINE : X9A; X9A REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98; 1.25 REMARK 200 MONOCHROMATOR : SAGITALLY FOCUSED SI(111); REMARK 200 SAGITALLY FOCUSED SI(111) REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; NULL REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH; NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 67865 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05800 REMARK 200 FOR THE DATA SET : 17.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.7 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.19600 REMARK 200 FOR SHELL : 5.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SIRAS, MOLECULAR REMARK 200 REPLACEMENT REMARK 200 SOFTWARE USED: MLPHARE REMARK 200 STARTING MODEL: ARP/WARP AUTOBUILT MODEL USING PHASES FROM TWO REMARK 200 TA6BR12 CLUSTERS AND A POOR MOLECULAR REPLACEMENT SOLUTION. MR REMARK 200 WAS CARRIED OUT USING A MODEL DERIVED FROM PDB ENTRY 1HD8, WHICH REMARK 200 IS A MUTANT OF PBP5, SHARING ~26% IDENTITY WITH PBP4 OVER A 245 REMARK 200 RESIDUE RANGE. PHASE COMBINATION WITH MR SOLUTION WAS NECESSARY, REMARK 200 AS TA6BR12 CLUSTERS OCCUPIED POSITIONS ON THE SYMMETRY PLANES REMARK 200 RESULTING IN CENTROSYMMETRIC PHASES AND HENCE UNINTERPRETABLE REMARK 200 MAPS. REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.95 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.58 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 24% PEG 4000, 100MM CITRATE BUFFER, REMARK 280 200MM AMMONIUM SULFATE, PH 5.6, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 24.35650 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 72.88750 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 70.09450 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 72.88750 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 24.35650 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 70.09450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: EACH MONOMER SEEM TO FORM A BIOLOGICAL UNIT. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 984 O HOH A 1106 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP B 130 CB - CG - OD1 ANGL. DEV. = 5.6 DEGREES REMARK 500 ASP B 197 CB - CG - OD2 ANGL. DEV. = 6.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 25 42.36 -71.38 REMARK 500 TYR A 38 46.52 -107.20 REMARK 500 TYR A 40 43.30 -61.07 REMARK 500 ALA A 74 -132.06 49.99 REMARK 500 ASN A 117 167.45 177.79 REMARK 500 ARG A 188 -127.20 54.60 REMARK 500 ALA A 230 59.88 -155.29 REMARK 500 SER A 251 120.60 -37.70 REMARK 500 LEU A 258 -60.84 -131.13 REMARK 500 ASN A 267 -141.75 55.27 REMARK 500 LEU A 294 -49.94 -178.23 REMARK 500 ASP A 358 65.45 31.71 REMARK 500 ASN A 371 -179.31 -171.77 REMARK 500 THR B 25 41.84 -75.86 REMARK 500 ALA B 74 -135.80 53.10 REMARK 500 GLU B 114 -1.59 69.47 REMARK 500 ASN B 117 169.83 177.09 REMARK 500 ARG B 188 -119.03 50.00 REMARK 500 ALA B 230 62.86 -163.00 REMARK 500 SER B 251 124.06 -38.22 REMARK 500 LEU B 258 -56.55 -129.50 REMARK 500 ASN B 267 -142.71 54.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR A 208 0.08 SIDE CHAIN REMARK 500 TYR B 208 0.07 SIDE CHAIN REMARK 500 TYR B 291 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 802 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 803 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 804 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 805 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNL A 900 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNL B 901 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: NYSGXRC-T72 RELATED DB: TARGETDB DBREF 1TVF A 21 383 UNP Q53613 Q53613_STAAU 21 383 DBREF 1TVF B 21 383 UNP Q53613 Q53613_STAAU 21 383 SEQADV 1TVF GLY A 15 UNP Q53613 CLONING ARTIFACT SEQADV 1TVF PRO A 16 UNP Q53613 CLONING ARTIFACT SEQADV 1TVF HIS A 17 UNP Q53613 CLONING ARTIFACT SEQADV 1TVF THR A 18 UNP Q53613 CLONING ARTIFACT SEQADV 1TVF SER A 19 UNP Q53613 CLONING ARTIFACT SEQADV 1TVF SER A 20 UNP Q53613 CLONING ARTIFACT SEQADV 1TVF GLY B 15 UNP Q53613 CLONING ARTIFACT SEQADV 1TVF PRO B 16 UNP Q53613 CLONING ARTIFACT SEQADV 1TVF HIS B 17 UNP Q53613 CLONING ARTIFACT SEQADV 1TVF THR B 18 UNP Q53613 CLONING ARTIFACT SEQADV 1TVF SER B 19 UNP Q53613 CLONING ARTIFACT SEQADV 1TVF SER B 20 UNP Q53613 CLONING ARTIFACT SEQRES 1 A 369 GLY PRO HIS THR SER SER TYR ALA GLN ALA THR ASN SER SEQRES 2 A 369 ASP VAL THR PRO VAL GLN ALA ALA ASN GLN TYR GLY TYR SEQRES 3 A 369 ALA GLY LEU SER ALA ALA TYR GLU PRO THR SER ALA VAL SEQRES 4 A 369 ASN VAL SER GLN THR GLY GLN LEU LEU TYR GLN TYR ASN SEQRES 5 A 369 ILE ASP THR LYS TRP ASN PRO ALA SER MET THR LYS LEU SEQRES 6 A 369 MET THR MET TYR LEU THR LEU GLU ALA VAL ASN LYS GLY SEQRES 7 A 369 GLN LEU SER LEU ASP ASP THR VAL THR MET THR ASN LYS SEQRES 8 A 369 GLU TYR ILE MET SER THR LEU PRO GLU LEU SER ASN THR SEQRES 9 A 369 LYS LEU TYR PRO GLY GLN VAL TRP THR ILE ALA ASP LEU SEQRES 10 A 369 LEU GLN ILE THR VAL SER ASN SER SER ASN ALA ALA ALA SEQRES 11 A 369 LEU ILE LEU ALA LYS LYS VAL SER LYS ASN THR SER ASP SEQRES 12 A 369 PHE VAL ASP LEU MET ASN ASN LYS ALA LYS ALA ILE GLY SEQRES 13 A 369 MET LYS ASN THR HIS PHE VAL ASN PRO THR GLY ALA GLU SEQRES 14 A 369 ASN SER ARG LEU ARG SER PHE ALA PRO THR LYS TYR LYS SEQRES 15 A 369 ASP GLN GLU ARG THR VAL THR THR ALA ARG ASP TYR ALA SEQRES 16 A 369 ILE LEU ASP LEU HIS VAL ILE LYS GLU THR PRO LYS ILE SEQRES 17 A 369 LEU ASP PHE THR LYS GLN LEU ALA PRO THR THR HIS ALA SEQRES 18 A 369 VAL THR TYR TYR THR PHE ASN PHE SER LEU GLU GLY ALA SEQRES 19 A 369 LYS MET SER LEU PRO GLY THR ASP GLY LEU LYS THR GLY SEQRES 20 A 369 SER SER ASP THR ALA ASN TYR ASN HIS THR ILE THR THR SEQRES 21 A 369 LYS ARG GLY LYS PHE ARG ILE ASN GLN VAL ILE MET GLY SEQRES 22 A 369 ALA GLY ASP TYR LYS ASN LEU GLY GLY GLU LYS GLN ARG SEQRES 23 A 369 ASN MET MET GLY ASN ALA LEU MET GLU ARG SER PHE ASP SEQRES 24 A 369 GLN TYR LYS TYR VAL LYS ILE LEU SER LYS GLY GLU GLN SEQRES 25 A 369 ARG ILE ASN GLY LYS LYS TYR TYR VAL GLU ASN ASP LEU SEQRES 26 A 369 TYR ASP VAL LEU PRO SER ASP PHE SER LYS LYS ASP TYR SEQRES 27 A 369 LYS LEU VAL VAL GLU ASP GLY LYS VAL HIS ALA ASP TYR SEQRES 28 A 369 PRO ARG GLU PHE ILE ASN LYS ASP TYR GLY PRO PRO THR SEQRES 29 A 369 VAL GLU VAL HIS GLN SEQRES 1 B 369 GLY PRO HIS THR SER SER TYR ALA GLN ALA THR ASN SER SEQRES 2 B 369 ASP VAL THR PRO VAL GLN ALA ALA ASN GLN TYR GLY TYR SEQRES 3 B 369 ALA GLY LEU SER ALA ALA TYR GLU PRO THR SER ALA VAL SEQRES 4 B 369 ASN VAL SER GLN THR GLY GLN LEU LEU TYR GLN TYR ASN SEQRES 5 B 369 ILE ASP THR LYS TRP ASN PRO ALA SER MET THR LYS LEU SEQRES 6 B 369 MET THR MET TYR LEU THR LEU GLU ALA VAL ASN LYS GLY SEQRES 7 B 369 GLN LEU SER LEU ASP ASP THR VAL THR MET THR ASN LYS SEQRES 8 B 369 GLU TYR ILE MET SER THR LEU PRO GLU LEU SER ASN THR SEQRES 9 B 369 LYS LEU TYR PRO GLY GLN VAL TRP THR ILE ALA ASP LEU SEQRES 10 B 369 LEU GLN ILE THR VAL SER ASN SER SER ASN ALA ALA ALA SEQRES 11 B 369 LEU ILE LEU ALA LYS LYS VAL SER LYS ASN THR SER ASP SEQRES 12 B 369 PHE VAL ASP LEU MET ASN ASN LYS ALA LYS ALA ILE GLY SEQRES 13 B 369 MET LYS ASN THR HIS PHE VAL ASN PRO THR GLY ALA GLU SEQRES 14 B 369 ASN SER ARG LEU ARG SER PHE ALA PRO THR LYS TYR LYS SEQRES 15 B 369 ASP GLN GLU ARG THR VAL THR THR ALA ARG ASP TYR ALA SEQRES 16 B 369 ILE LEU ASP LEU HIS VAL ILE LYS GLU THR PRO LYS ILE SEQRES 17 B 369 LEU ASP PHE THR LYS GLN LEU ALA PRO THR THR HIS ALA SEQRES 18 B 369 VAL THR TYR TYR THR PHE ASN PHE SER LEU GLU GLY ALA SEQRES 19 B 369 LYS MET SER LEU PRO GLY THR ASP GLY LEU LYS THR GLY SEQRES 20 B 369 SER SER ASP THR ALA ASN TYR ASN HIS THR ILE THR THR SEQRES 21 B 369 LYS ARG GLY LYS PHE ARG ILE ASN GLN VAL ILE MET GLY SEQRES 22 B 369 ALA GLY ASP TYR LYS ASN LEU GLY GLY GLU LYS GLN ARG SEQRES 23 B 369 ASN MET MET GLY ASN ALA LEU MET GLU ARG SER PHE ASP SEQRES 24 B 369 GLN TYR LYS TYR VAL LYS ILE LEU SER LYS GLY GLU GLN SEQRES 25 B 369 ARG ILE ASN GLY LYS LYS TYR TYR VAL GLU ASN ASP LEU SEQRES 26 B 369 TYR ASP VAL LEU PRO SER ASP PHE SER LYS LYS ASP TYR SEQRES 27 B 369 LYS LEU VAL VAL GLU ASP GLY LYS VAL HIS ALA ASP TYR SEQRES 28 B 369 PRO ARG GLU PHE ILE ASN LYS ASP TYR GLY PRO PRO THR SEQRES 29 B 369 VAL GLU VAL HIS GLN HET SO4 A 801 5 HET SO4 A 802 5 HET SO4 A 803 5 HET UNL A 900 9 HET SO4 B 804 5 HET SO4 B 805 5 HET UNL B 901 9 HETNAM SO4 SULFATE ION HETNAM UNL UNKNOWN LIGAND FORMUL 3 SO4 5(O4 S 2-) FORMUL 10 HOH *781(H2 O) HELIX 1 1 GLY A 15 ALA A 22 1 8 HELIX 2 2 THR A 30 TYR A 38 1 9 HELIX 3 3 SER A 44 GLU A 48 5 5 HELIX 4 4 PRO A 73 SER A 75 5 3 HELIX 5 5 MET A 76 LYS A 91 1 16 HELIX 6 6 THR A 103 SER A 110 1 8 HELIX 7 7 ILE A 128 ASN A 138 1 11 HELIX 8 8 SER A 140 SER A 152 1 13 HELIX 9 9 ASN A 154 ILE A 169 1 16 HELIX 10 10 GLU A 183 ARG A 188 1 6 HELIX 11 11 SER A 189 ALA A 191 5 3 HELIX 12 12 PRO A 192 LYS A 196 5 5 HELIX 13 13 THR A 204 THR A 219 1 16 HELIX 14 14 LYS A 221 LYS A 227 1 7 HELIX 15 15 GLY A 296 GLN A 314 1 19 HELIX 16 16 SER A 348 TYR A 352 5 5 HELIX 17 17 GLY B 15 TYR B 21 1 7 HELIX 18 18 THR B 30 GLY B 39 1 10 HELIX 19 19 SER B 44 GLU B 48 5 5 HELIX 20 20 PRO B 73 SER B 75 5 3 HELIX 21 21 MET B 76 LYS B 91 1 16 HELIX 22 22 THR B 103 SER B 110 1 8 HELIX 23 23 ILE B 128 ASN B 138 1 11 HELIX 24 24 SER B 140 SER B 152 1 13 HELIX 25 25 ASN B 154 GLY B 170 1 17 HELIX 26 26 GLU B 183 ARG B 188 1 6 HELIX 27 27 SER B 189 ALA B 191 5 3 HELIX 28 28 PRO B 192 LYS B 196 5 5 HELIX 29 29 THR B 204 THR B 219 1 16 HELIX 30 30 LYS B 221 LYS B 227 1 7 HELIX 31 31 GLY B 296 GLN B 314 1 19 HELIX 32 32 SER B 348 TYR B 352 5 5 SHEET 1 A 5 LEU A 61 TYR A 65 0 SHEET 2 A 5 SER A 51 SER A 56 -1 N ASN A 54 O LEU A 62 SHEET 3 A 5 PHE A 279 ALA A 288 -1 O ASN A 282 N VAL A 55 SHEET 4 A 5 ASN A 267 ARG A 276 -1 N ILE A 272 O GLN A 283 SHEET 5 A 5 THR A 255 SER A 263 -1 N GLY A 261 O ASN A 269 SHEET 1 B 2 THR A 99 THR A 101 0 SHEET 2 B 2 VAL A 125 THR A 127 -1 O TRP A 126 N VAL A 100 SHEET 1 C 2 THR A 232 THR A 233 0 SHEET 2 C 2 VAL A 236 THR A 237 -1 O VAL A 236 N THR A 233 SHEET 1 D 2 TYR A 315 LEU A 321 0 SHEET 2 D 2 LEU A 339 PRO A 344 -1 O LEU A 339 N ILE A 320 SHEET 1 E 5 GLY A 324 ILE A 328 0 SHEET 2 E 5 LYS A 331 VAL A 335 -1 O VAL A 335 N GLY A 324 SHEET 3 E 5 VAL A 379 HIS A 382 -1 O HIS A 382 N TYR A 334 SHEET 4 E 5 LYS A 360 ASP A 364 -1 N VAL A 361 O VAL A 379 SHEET 5 E 5 LYS A 353 GLU A 357 -1 N VAL A 355 O HIS A 362 SHEET 1 F 5 LEU B 61 TYR B 65 0 SHEET 2 F 5 SER B 51 SER B 56 -1 N ASN B 54 O LEU B 62 SHEET 3 F 5 PHE B 279 ALA B 288 -1 O ASN B 282 N VAL B 55 SHEET 4 F 5 ASN B 267 ARG B 276 -1 N TYR B 268 O ALA B 288 SHEET 5 F 5 THR B 255 SER B 263 -1 N GLY B 261 O ASN B 269 SHEET 1 G 2 THR B 99 THR B 101 0 SHEET 2 G 2 VAL B 125 THR B 127 -1 O TRP B 126 N VAL B 100 SHEET 1 H 2 THR B 232 THR B 233 0 SHEET 2 H 2 VAL B 236 THR B 237 -1 O VAL B 236 N THR B 233 SHEET 1 I 2 TYR B 315 LEU B 321 0 SHEET 2 I 2 LEU B 339 PRO B 344 -1 O LEU B 339 N ILE B 320 SHEET 1 J 5 GLY B 324 ILE B 328 0 SHEET 2 J 5 LYS B 331 VAL B 335 -1 O LYS B 331 N ILE B 328 SHEET 3 J 5 VAL B 379 HIS B 382 -1 O HIS B 382 N TYR B 334 SHEET 4 J 5 LYS B 360 ASP B 364 -1 N VAL B 361 O VAL B 379 SHEET 5 J 5 LYS B 353 GLU B 357 -1 N VAL B 355 O HIS B 362 CISPEP 1 GLY A 257 LEU A 258 0 2.31 CISPEP 2 GLY B 257 LEU B 258 0 0.51 SITE 1 AC1 7 ASN A 154 THR A 155 SER A 156 PRO A 192 SITE 2 AC1 7 THR A 193 HOH A1031 HOH A1196 SITE 1 AC2 8 GLN A 124 VAL A 125 LYS A 172 HIS A 234 SITE 2 AC2 8 HOH A1023 HOH A1129 HOH A1224 HOH A1227 SITE 1 AC3 6 ASP A 197 GLN A 198 GLU A 199 ARG A 200 SITE 2 AC3 6 HOH A1061 HOH A1230 SITE 1 AC4 3 GLN B 198 GLU B 199 ARG B 200 SITE 1 AC5 8 GLN B 124 VAL B 125 LYS B 172 HIS B 234 SITE 2 AC5 8 HOH B1111 HOH B1262 HOH B1272 HOH B1285 SITE 1 AC6 14 GLY A 15 PRO A 16 HIS A 17 THR A 18 SITE 2 AC6 14 SER A 75 SER A 116 SER A 139 PHE A 241 SITE 3 AC6 14 THR A 260 GLY A 261 SER A 262 HOH A 941 SITE 4 AC6 14 HOH A 996 HOH A1048 SITE 1 AC7 14 GLY B 15 PRO B 16 HIS B 17 THR B 18 SITE 2 AC7 14 SER B 75 SER B 116 SER B 139 PHE B 241 SITE 3 AC7 14 THR B 260 GLY B 261 SER B 262 HOH B 910 SITE 4 AC7 14 HOH B 963 HOH B1042 CRYST1 48.713 140.189 145.775 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020528 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007133 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006860 0.00000