data_1U0J # _entry.id 1U0J # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.376 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1U0J pdb_00001u0j 10.2210/pdb1u0j/pdb RCSB RCSB023093 ? ? WWPDB D_1000023093 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1U0J _pdbx_database_status.recvd_initial_deposition_date 2004-07-13 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'James, J.A.' 1 'Aggarwal, A.K.' 2 'Linden, R.M.' 3 'Escalante, C.R.' 4 # _citation.id primary _citation.title ;Structure of adeno-associated virus type 2 Rep40-ADP complex: Insight into nucleotide recognition and catalysis by superfamily 3 helicases ; _citation.journal_abbrev Proc.Natl.Acad.Sci.USA _citation.journal_volume 101 _citation.page_first 12455 _citation.page_last 12460 _citation.year 2004 _citation.journal_id_ASTM PNASA6 _citation.country US _citation.journal_id_ISSN 0027-8424 _citation.journal_id_CSD 0040 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 15310852 _citation.pdbx_database_id_DOI 10.1073/pnas.0403454101 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'James, J.A.' 1 ? primary 'Aggarwal, A.K.' 2 ? primary 'Linden, R.M.' 3 ? primary 'Escalante, C.R.' 4 ? # _cell.entry_id 1U0J _cell.length_a 71.000 _cell.length_b 71.000 _cell.length_c 95.396 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1U0J _symmetry.space_group_name_H-M 'P 65' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'DNA replication protein' 30127.133 1 ? ? 'helicase domain 225-490' ? 2 non-polymer syn "ADENOSINE-5'-DIPHOSPHATE" 427.201 1 ? ? ? ? 3 water nat water 18.015 212 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Noncapsid protein' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GMELVGWLVDKGITSEKQWIQEDQASYISFNAASNSRSQIKAALDNAGKIMSLTKTAPDYLVGQQPVEDISSNRIYKILE LNGYDPQYAASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTVPFYGCVNWTNENFPFNDCVDKMVIWWEEGKMT AKVVESAKAILGGSKVRVDQKCKSSAQIDPTPVIVTSNTNMCAVIDGNSTTFEHQQPLQDRMFKFELTRRLDHDFGKVTK QEVKDFFRWAKDHVVEVEHEFYVKKGG ; _entity_poly.pdbx_seq_one_letter_code_can ;GMELVGWLVDKGITSEKQWIQEDQASYISFNAASNSRSQIKAALDNAGKIMSLTKTAPDYLVGQQPVEDISSNRIYKILE LNGYDPQYAASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTVPFYGCVNWTNENFPFNDCVDKMVIWWEEGKMT AKVVESAKAILGGSKVRVDQKCKSSAQIDPTPVIVTSNTNMCAVIDGNSTTFEHQQPLQDRMFKFELTRRLDHDFGKVTK QEVKDFFRWAKDHVVEVEHEFYVKKGG ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 MET n 1 3 GLU n 1 4 LEU n 1 5 VAL n 1 6 GLY n 1 7 TRP n 1 8 LEU n 1 9 VAL n 1 10 ASP n 1 11 LYS n 1 12 GLY n 1 13 ILE n 1 14 THR n 1 15 SER n 1 16 GLU n 1 17 LYS n 1 18 GLN n 1 19 TRP n 1 20 ILE n 1 21 GLN n 1 22 GLU n 1 23 ASP n 1 24 GLN n 1 25 ALA n 1 26 SER n 1 27 TYR n 1 28 ILE n 1 29 SER n 1 30 PHE n 1 31 ASN n 1 32 ALA n 1 33 ALA n 1 34 SER n 1 35 ASN n 1 36 SER n 1 37 ARG n 1 38 SER n 1 39 GLN n 1 40 ILE n 1 41 LYS n 1 42 ALA n 1 43 ALA n 1 44 LEU n 1 45 ASP n 1 46 ASN n 1 47 ALA n 1 48 GLY n 1 49 LYS n 1 50 ILE n 1 51 MET n 1 52 SER n 1 53 LEU n 1 54 THR n 1 55 LYS n 1 56 THR n 1 57 ALA n 1 58 PRO n 1 59 ASP n 1 60 TYR n 1 61 LEU n 1 62 VAL n 1 63 GLY n 1 64 GLN n 1 65 GLN n 1 66 PRO n 1 67 VAL n 1 68 GLU n 1 69 ASP n 1 70 ILE n 1 71 SER n 1 72 SER n 1 73 ASN n 1 74 ARG n 1 75 ILE n 1 76 TYR n 1 77 LYS n 1 78 ILE n 1 79 LEU n 1 80 GLU n 1 81 LEU n 1 82 ASN n 1 83 GLY n 1 84 TYR n 1 85 ASP n 1 86 PRO n 1 87 GLN n 1 88 TYR n 1 89 ALA n 1 90 ALA n 1 91 SER n 1 92 VAL n 1 93 PHE n 1 94 LEU n 1 95 GLY n 1 96 TRP n 1 97 ALA n 1 98 THR n 1 99 LYS n 1 100 LYS n 1 101 PHE n 1 102 GLY n 1 103 LYS n 1 104 ARG n 1 105 ASN n 1 106 THR n 1 107 ILE n 1 108 TRP n 1 109 LEU n 1 110 PHE n 1 111 GLY n 1 112 PRO n 1 113 ALA n 1 114 THR n 1 115 THR n 1 116 GLY n 1 117 LYS n 1 118 THR n 1 119 ASN n 1 120 ILE n 1 121 ALA n 1 122 GLU n 1 123 ALA n 1 124 ILE n 1 125 ALA n 1 126 HIS n 1 127 THR n 1 128 VAL n 1 129 PRO n 1 130 PHE n 1 131 TYR n 1 132 GLY n 1 133 CYS n 1 134 VAL n 1 135 ASN n 1 136 TRP n 1 137 THR n 1 138 ASN n 1 139 GLU n 1 140 ASN n 1 141 PHE n 1 142 PRO n 1 143 PHE n 1 144 ASN n 1 145 ASP n 1 146 CYS n 1 147 VAL n 1 148 ASP n 1 149 LYS n 1 150 MET n 1 151 VAL n 1 152 ILE n 1 153 TRP n 1 154 TRP n 1 155 GLU n 1 156 GLU n 1 157 GLY n 1 158 LYS n 1 159 MET n 1 160 THR n 1 161 ALA n 1 162 LYS n 1 163 VAL n 1 164 VAL n 1 165 GLU n 1 166 SER n 1 167 ALA n 1 168 LYS n 1 169 ALA n 1 170 ILE n 1 171 LEU n 1 172 GLY n 1 173 GLY n 1 174 SER n 1 175 LYS n 1 176 VAL n 1 177 ARG n 1 178 VAL n 1 179 ASP n 1 180 GLN n 1 181 LYS n 1 182 CYS n 1 183 LYS n 1 184 SER n 1 185 SER n 1 186 ALA n 1 187 GLN n 1 188 ILE n 1 189 ASP n 1 190 PRO n 1 191 THR n 1 192 PRO n 1 193 VAL n 1 194 ILE n 1 195 VAL n 1 196 THR n 1 197 SER n 1 198 ASN n 1 199 THR n 1 200 ASN n 1 201 MET n 1 202 CYS n 1 203 ALA n 1 204 VAL n 1 205 ILE n 1 206 ASP n 1 207 GLY n 1 208 ASN n 1 209 SER n 1 210 THR n 1 211 THR n 1 212 PHE n 1 213 GLU n 1 214 HIS n 1 215 GLN n 1 216 GLN n 1 217 PRO n 1 218 LEU n 1 219 GLN n 1 220 ASP n 1 221 ARG n 1 222 MET n 1 223 PHE n 1 224 LYS n 1 225 PHE n 1 226 GLU n 1 227 LEU n 1 228 THR n 1 229 ARG n 1 230 ARG n 1 231 LEU n 1 232 ASP n 1 233 HIS n 1 234 ASP n 1 235 PHE n 1 236 GLY n 1 237 LYS n 1 238 VAL n 1 239 THR n 1 240 LYS n 1 241 GLN n 1 242 GLU n 1 243 VAL n 1 244 LYS n 1 245 ASP n 1 246 PHE n 1 247 PHE n 1 248 ARG n 1 249 TRP n 1 250 ALA n 1 251 LYS n 1 252 ASP n 1 253 HIS n 1 254 VAL n 1 255 VAL n 1 256 GLU n 1 257 VAL n 1 258 GLU n 1 259 HIS n 1 260 GLU n 1 261 PHE n 1 262 TYR n 1 263 VAL n 1 264 LYS n 1 265 LYS n 1 266 GLY n 1 267 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Dependovirus _entity_src_gen.pdbx_gene_src_gene REP _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Adeno-associated virus - 2' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 10804 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(pLysS)DE3' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name PET-15b _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code VNCA_AAV2 _struct_ref.pdbx_db_accession P03132 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MELVGWLVDKGITSEKQWIQEDQASYISFNAASNSRSQIKAALDNAGKIMSLTKTAPDYLVGQQPVEDISSNRIYKILEL NGYDPQYAASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTVPFYGCVNWTNENFPFNDCVDKMVIWWEEGKMTA KVVESAKAILGGSKVRVDQKCKSSAQIDPTPVIVTSNTNMCAVIDGNSTTFEHQQPLQDRMFKFELTRRLDHDFGKVTKQ EVKDFFRWAKDHVVEVEHEFYVKKGG ; _struct_ref.pdbx_align_begin 225 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1U0J _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 2 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 267 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P03132 _struct_ref_seq.db_align_beg 225 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 490 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 225 _struct_ref_seq.pdbx_auth_seq_align_end 490 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 1U0J _struct_ref_seq_dif.mon_id GLY _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 1 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code P03132 _struct_ref_seq_dif.db_mon_id ? _struct_ref_seq_dif.pdbx_seq_db_seq_num ? _struct_ref_seq_dif.details 'cloning artifact' _struct_ref_seq_dif.pdbx_auth_seq_num 224 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ADP non-polymer n "ADENOSINE-5'-DIPHOSPHATE" ? 'C10 H15 N5 O10 P2' 427.201 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1U0J _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.314 _exptl_crystal.density_percent_sol 46.9 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 277.0 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 8.5 _exptl_crystal_grow.pdbx_details 'PEG 8k, sodium acetate, MgCl2, Tris, pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 4K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 109 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'BRANDEIS - B4' _diffrn_detector.pdbx_collection_date 2003-05-15 _diffrn_detector.details 'toroidal mirror' # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'channel-cut crystal monochromator' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.1 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'NSLS BEAMLINE X12C' _diffrn_source.pdbx_synchrotron_site NSLS _diffrn_source.pdbx_synchrotron_beamline X12C _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.1 # _reflns.entry_id 1U0J _reflns.observed_criterion_sigma_I -3 _reflns.observed_criterion_sigma_F -3 _reflns.d_resolution_low 50 _reflns.d_resolution_high 2.1 _reflns.number_obs 15662 _reflns.number_all 16019 _reflns.percent_possible_obs 97.9 _reflns.pdbx_Rmerge_I_obs 0.062 _reflns.pdbx_Rsym_value 0.062 _reflns.pdbx_netI_over_sigmaI 17.6 _reflns.B_iso_Wilson_estimate 17.3 _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.1 _reflns_shell.d_res_low 50 _reflns_shell.percent_possible_all 97.9 _reflns_shell.Rmerge_I_obs 0.062 _reflns_shell.pdbx_Rsym_value 0.062 _reflns_shell.meanI_over_sigI_obs 17.6 _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 15662 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 1U0J _refine.ls_number_reflns_obs 13428 _refine.ls_number_reflns_all 14926 _refine.pdbx_ls_sigma_I 2.0 _refine.pdbx_ls_sigma_F 2.0 _refine.pdbx_data_cutoff_high_absF 279330.81 _refine.pdbx_data_cutoff_low_absF 0.000000 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 19.80 _refine.ls_d_res_high 2.10 _refine.ls_percent_reflns_obs 84.2 _refine.ls_R_factor_obs 0.192 _refine.ls_R_factor_all 0.202 _refine.ls_R_factor_R_work 0.192 _refine.ls_R_factor_R_free 0.237 _refine.ls_R_factor_R_free_error 0.006 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 10.0 _refine.ls_number_reflns_R_free 1347 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 33.4 _refine.aniso_B[1][1] 4.88 _refine.aniso_B[2][2] 4.88 _refine.aniso_B[3][3] -9.76 _refine.aniso_B[1][2] 6.27 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.336872 _refine.solvent_model_param_bsol 30.9264 _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model 'PDB entry 1S9H (chain B)' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 1U0J _refine_analyze.Luzzati_coordinate_error_obs 0.22 _refine_analyze.Luzzati_sigma_a_obs 0.18 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.30 _refine_analyze.Luzzati_sigma_a_free 0.24 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2044 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 27 _refine_hist.number_atoms_solvent 212 _refine_hist.number_atoms_total 2283 _refine_hist.d_res_high 2.10 _refine_hist.d_res_low 19.80 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.018 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 2.5 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 23.0 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 1.60 ? ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it 3.04 1.50 ? ? 'X-RAY DIFFRACTION' ? c_mcangle_it 4.06 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scbond_it 4.57 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scangle_it 5.95 2.50 ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 2.10 _refine_ls_shell.d_res_low 2.23 _refine_ls_shell.number_reflns_R_work 1445 _refine_ls_shell.R_factor_R_work 0.224 _refine_ls_shell.percent_reflns_obs 61.5 _refine_ls_shell.R_factor_R_free 0.29 _refine_ls_shell.R_factor_R_free_error 0.022 _refine_ls_shell.percent_reflns_R_free 11.2 _refine_ls_shell.number_reflns_R_free 182 _refine_ls_shell.number_reflns_obs 1445 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.R_factor_all ? # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 PROTEIN_REP.PARAM PROTEIN.TOP 'X-RAY DIFFRACTION' 2 WATER_REP.PARAM ? 'X-RAY DIFFRACTION' 3 ADP.PARAM ? 'X-RAY DIFFRACTION' # _struct.entry_id 1U0J _struct.title 'Crystal Structure of AAV2 Rep40-ADP complex' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1U0J _struct_keywords.pdbx_keywords REPLICATION _struct_keywords.text 'AAA+ protein, P-loop ATPases, Helicase, REPLICATION' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_biol.id 1 _struct_biol.pdbx_parent_biol_id ? _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY A 1 ? GLY A 12 ? GLY A 224 GLY A 235 1 ? 12 HELX_P HELX_P2 2 SER A 15 ? ALA A 32 ? SER A 238 ALA A 255 1 ? 18 HELX_P HELX_P3 3 SER A 36 ? LYS A 55 ? SER A 259 LYS A 278 1 ? 20 HELX_P HELX_P4 4 THR A 56 ? VAL A 62 ? THR A 279 VAL A 285 1 ? 7 HELX_P HELX_P5 5 ASP A 69 ? SER A 72 ? ASP A 292 SER A 295 5 ? 4 HELX_P HELX_P6 6 ASN A 73 ? ASN A 82 ? ASN A 296 ASN A 305 1 ? 10 HELX_P HELX_P7 7 ASP A 85 ? THR A 98 ? ASP A 308 THR A 321 1 ? 14 HELX_P HELX_P8 8 GLY A 116 ? VAL A 128 ? GLY A 339 VAL A 351 1 ? 13 HELX_P HELX_P9 9 PHE A 143 ? VAL A 147 ? PHE A 366 VAL A 370 5 ? 5 HELX_P HELX_P10 10 VAL A 163 ? GLY A 172 ? VAL A 386 GLY A 395 1 ? 10 HELX_P HELX_P11 11 HIS A 214 ? ASP A 220 ? HIS A 437 ASP A 443 1 ? 7 HELX_P HELX_P12 12 THR A 239 ? HIS A 253 ? THR A 462 HIS A 476 1 ? 15 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 5 ? B ? 3 ? C ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? parallel A 3 4 ? parallel A 4 5 ? parallel B 1 2 ? parallel B 2 3 ? anti-parallel C 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 TYR A 131 ? CYS A 133 ? TYR A 354 CYS A 356 A 2 VAL A 151 ? TRP A 154 ? VAL A 374 TRP A 377 A 3 VAL A 193 ? SER A 197 ? VAL A 416 SER A 420 A 4 THR A 106 ? PHE A 110 ? THR A 329 PHE A 333 A 5 MET A 222 ? GLU A 226 ? MET A 445 GLU A 449 B 1 MET A 159 ? THR A 160 ? MET A 382 THR A 383 B 2 VAL A 204 ? ASP A 206 ? VAL A 427 ASP A 429 B 3 SER A 209 ? THR A 211 ? SER A 432 THR A 434 C 1 VAL A 176 ? ARG A 177 ? VAL A 399 ARG A 400 C 2 GLN A 187 ? ILE A 188 ? GLN A 410 ILE A 411 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N GLY A 132 ? N GLY A 355 O TRP A 153 ? O TRP A 376 A 2 3 N ILE A 152 ? N ILE A 375 O ILE A 194 ? O ILE A 417 A 3 4 O VAL A 195 ? O VAL A 418 N LEU A 109 ? N LEU A 332 A 4 5 N TRP A 108 ? N TRP A 331 O PHE A 223 ? O PHE A 446 B 1 2 N MET A 159 ? N MET A 382 O ILE A 205 ? O ILE A 428 B 2 3 N ASP A 206 ? N ASP A 429 O SER A 209 ? O SER A 432 C 1 2 N VAL A 176 ? N VAL A 399 O ILE A 188 ? O ILE A 411 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id ADP _struct_site.pdbx_auth_seq_id 491 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 19 _struct_site.details 'BINDING SITE FOR RESIDUE ADP A 491' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 19 HOH C . ? HOH A 26 . ? 1_555 ? 2 AC1 19 HOH C . ? HOH A 40 . ? 1_555 ? 3 AC1 19 HOH C . ? HOH A 78 . ? 1_555 ? 4 AC1 19 HOH C . ? HOH A 93 . ? 1_555 ? 5 AC1 19 HOH C . ? HOH A 110 . ? 1_555 ? 6 AC1 19 HOH C . ? HOH A 112 . ? 1_555 ? 7 AC1 19 ALA A 113 ? ALA A 336 . ? 1_555 ? 8 AC1 19 THR A 114 ? THR A 337 . ? 1_555 ? 9 AC1 19 THR A 115 ? THR A 338 . ? 1_555 ? 10 AC1 19 GLY A 116 ? GLY A 339 . ? 1_555 ? 11 AC1 19 LYS A 117 ? LYS A 340 . ? 1_555 ? 12 AC1 19 THR A 118 ? THR A 341 . ? 1_555 ? 13 AC1 19 ASN A 119 ? ASN A 342 . ? 1_555 ? 14 AC1 19 LEU A 231 ? LEU A 454 . ? 1_555 ? 15 AC1 19 ASP A 232 ? ASP A 455 . ? 1_555 ? 16 AC1 19 HIS A 233 ? HIS A 456 . ? 1_555 ? 17 AC1 19 PHE A 235 ? PHE A 458 . ? 1_555 ? 18 AC1 19 GLY A 236 ? GLY A 459 . ? 1_555 ? 19 AC1 19 LYS A 237 ? LYS A 460 . ? 1_555 ? # _database_PDB_matrix.entry_id 1U0J _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1U0J _atom_sites.fract_transf_matrix[1][1] 0.014085 _atom_sites.fract_transf_matrix[1][2] 0.008132 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.016263 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.010483 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 224 224 GLY GLY A . n A 1 2 MET 2 225 225 MET MET A . n A 1 3 GLU 3 226 226 GLU GLU A . n A 1 4 LEU 4 227 227 LEU LEU A . n A 1 5 VAL 5 228 228 VAL VAL A . n A 1 6 GLY 6 229 229 GLY GLY A . n A 1 7 TRP 7 230 230 TRP TRP A . n A 1 8 LEU 8 231 231 LEU LEU A . n A 1 9 VAL 9 232 232 VAL VAL A . n A 1 10 ASP 10 233 233 ASP ASP A . n A 1 11 LYS 11 234 234 LYS LYS A . n A 1 12 GLY 12 235 235 GLY GLY A . n A 1 13 ILE 13 236 236 ILE ILE A . n A 1 14 THR 14 237 237 THR THR A . n A 1 15 SER 15 238 238 SER SER A . n A 1 16 GLU 16 239 239 GLU GLU A . n A 1 17 LYS 17 240 240 LYS LYS A . n A 1 18 GLN 18 241 241 GLN GLN A . n A 1 19 TRP 19 242 242 TRP TRP A . n A 1 20 ILE 20 243 243 ILE ILE A . n A 1 21 GLN 21 244 244 GLN GLN A . n A 1 22 GLU 22 245 245 GLU GLU A . n A 1 23 ASP 23 246 246 ASP ASP A . n A 1 24 GLN 24 247 247 GLN GLN A . n A 1 25 ALA 25 248 248 ALA ALA A . n A 1 26 SER 26 249 249 SER SER A . n A 1 27 TYR 27 250 250 TYR TYR A . n A 1 28 ILE 28 251 251 ILE ILE A . n A 1 29 SER 29 252 252 SER SER A . n A 1 30 PHE 30 253 253 PHE PHE A . n A 1 31 ASN 31 254 254 ASN ASN A . n A 1 32 ALA 32 255 255 ALA ALA A . n A 1 33 ALA 33 256 256 ALA ALA A . n A 1 34 SER 34 257 257 SER SER A . n A 1 35 ASN 35 258 258 ASN ASN A . n A 1 36 SER 36 259 259 SER SER A . n A 1 37 ARG 37 260 260 ARG ARG A . n A 1 38 SER 38 261 261 SER SER A . n A 1 39 GLN 39 262 262 GLN ALA A . n A 1 40 ILE 40 263 263 ILE ILE A . n A 1 41 LYS 41 264 264 LYS LYS A . n A 1 42 ALA 42 265 265 ALA ALA A . n A 1 43 ALA 43 266 266 ALA ALA A . n A 1 44 LEU 44 267 267 LEU LEU A . n A 1 45 ASP 45 268 268 ASP ASP A . n A 1 46 ASN 46 269 269 ASN ASN A . n A 1 47 ALA 47 270 270 ALA ALA A . n A 1 48 GLY 48 271 271 GLY GLY A . n A 1 49 LYS 49 272 272 LYS LYS A . n A 1 50 ILE 50 273 273 ILE ILE A . n A 1 51 MET 51 274 274 MET MET A . n A 1 52 SER 52 275 275 SER SER A . n A 1 53 LEU 53 276 276 LEU LEU A . n A 1 54 THR 54 277 277 THR THR A . n A 1 55 LYS 55 278 278 LYS LYS A . n A 1 56 THR 56 279 279 THR THR A . n A 1 57 ALA 57 280 280 ALA ALA A . n A 1 58 PRO 58 281 281 PRO PRO A . n A 1 59 ASP 59 282 282 ASP ASP A . n A 1 60 TYR 60 283 283 TYR TYR A . n A 1 61 LEU 61 284 284 LEU LEU A . n A 1 62 VAL 62 285 285 VAL VAL A . n A 1 63 GLY 63 286 286 GLY GLY A . n A 1 64 GLN 64 287 287 GLN GLN A . n A 1 65 GLN 65 288 288 GLN GLN A . n A 1 66 PRO 66 289 289 PRO PRO A . n A 1 67 VAL 67 290 290 VAL VAL A . n A 1 68 GLU 68 291 291 GLU GLU A . n A 1 69 ASP 69 292 292 ASP ASP A . n A 1 70 ILE 70 293 293 ILE ILE A . n A 1 71 SER 71 294 294 SER SER A . n A 1 72 SER 72 295 295 SER SER A . n A 1 73 ASN 73 296 296 ASN ASN A . n A 1 74 ARG 74 297 297 ARG ARG A . n A 1 75 ILE 75 298 298 ILE ILE A . n A 1 76 TYR 76 299 299 TYR TYR A . n A 1 77 LYS 77 300 300 LYS LYS A . n A 1 78 ILE 78 301 301 ILE ILE A . n A 1 79 LEU 79 302 302 LEU LEU A . n A 1 80 GLU 80 303 303 GLU GLU A . n A 1 81 LEU 81 304 304 LEU LEU A . n A 1 82 ASN 82 305 305 ASN ASN A . n A 1 83 GLY 83 306 306 GLY GLY A . n A 1 84 TYR 84 307 307 TYR TYR A . n A 1 85 ASP 85 308 308 ASP ASP A . n A 1 86 PRO 86 309 309 PRO PRO A . n A 1 87 GLN 87 310 310 GLN GLN A . n A 1 88 TYR 88 311 311 TYR TYR A . n A 1 89 ALA 89 312 312 ALA ALA A . n A 1 90 ALA 90 313 313 ALA ALA A . n A 1 91 SER 91 314 314 SER SER A . n A 1 92 VAL 92 315 315 VAL VAL A . n A 1 93 PHE 93 316 316 PHE PHE A . n A 1 94 LEU 94 317 317 LEU LEU A . n A 1 95 GLY 95 318 318 GLY GLY A . n A 1 96 TRP 96 319 319 TRP TRP A . n A 1 97 ALA 97 320 320 ALA ALA A . n A 1 98 THR 98 321 321 THR THR A . n A 1 99 LYS 99 322 322 LYS LYS A . n A 1 100 LYS 100 323 323 LYS LYS A . n A 1 101 PHE 101 324 324 PHE PHE A . n A 1 102 GLY 102 325 325 GLY GLY A . n A 1 103 LYS 103 326 326 LYS LYS A . n A 1 104 ARG 104 327 327 ARG ARG A . n A 1 105 ASN 105 328 328 ASN ASN A . n A 1 106 THR 106 329 329 THR THR A . n A 1 107 ILE 107 330 330 ILE ILE A . n A 1 108 TRP 108 331 331 TRP TRP A . n A 1 109 LEU 109 332 332 LEU LEU A . n A 1 110 PHE 110 333 333 PHE PHE A . n A 1 111 GLY 111 334 334 GLY GLY A . n A 1 112 PRO 112 335 335 PRO PRO A . n A 1 113 ALA 113 336 336 ALA ALA A . n A 1 114 THR 114 337 337 THR THR A . n A 1 115 THR 115 338 338 THR THR A . n A 1 116 GLY 116 339 339 GLY GLY A . n A 1 117 LYS 117 340 340 LYS LYS A . n A 1 118 THR 118 341 341 THR THR A . n A 1 119 ASN 119 342 342 ASN ASN A . n A 1 120 ILE 120 343 343 ILE ILE A . n A 1 121 ALA 121 344 344 ALA ALA A . n A 1 122 GLU 122 345 345 GLU GLU A . n A 1 123 ALA 123 346 346 ALA ALA A . n A 1 124 ILE 124 347 347 ILE ILE A . n A 1 125 ALA 125 348 348 ALA ALA A . n A 1 126 HIS 126 349 349 HIS HIS A . n A 1 127 THR 127 350 350 THR THR A . n A 1 128 VAL 128 351 351 VAL VAL A . n A 1 129 PRO 129 352 352 PRO PRO A . n A 1 130 PHE 130 353 353 PHE PHE A . n A 1 131 TYR 131 354 354 TYR TYR A . n A 1 132 GLY 132 355 355 GLY GLY A . n A 1 133 CYS 133 356 356 CYS CYS A . n A 1 134 VAL 134 357 357 VAL VAL A . n A 1 135 ASN 135 358 358 ASN ASN A . n A 1 136 TRP 136 359 359 TRP TRP A . n A 1 137 THR 137 360 360 THR THR A . n A 1 138 ASN 138 361 361 ASN ASN A . n A 1 139 GLU 139 362 362 GLU ALA A . n A 1 140 ASN 140 363 363 ASN ASN A . n A 1 141 PHE 141 364 364 PHE ALA A . n A 1 142 PRO 142 365 365 PRO PRO A . n A 1 143 PHE 143 366 366 PHE PHE A . n A 1 144 ASN 144 367 367 ASN ASN A . n A 1 145 ASP 145 368 368 ASP ASP A . n A 1 146 CYS 146 369 369 CYS CYS A . n A 1 147 VAL 147 370 370 VAL VAL A . n A 1 148 ASP 148 371 371 ASP ASP A . n A 1 149 LYS 149 372 372 LYS LYS A . n A 1 150 MET 150 373 373 MET MET A . n A 1 151 VAL 151 374 374 VAL VAL A . n A 1 152 ILE 152 375 375 ILE ILE A . n A 1 153 TRP 153 376 376 TRP TRP A . n A 1 154 TRP 154 377 377 TRP TRP A . n A 1 155 GLU 155 378 378 GLU GLU A . n A 1 156 GLU 156 379 379 GLU GLU A . n A 1 157 GLY 157 380 380 GLY GLY A . n A 1 158 LYS 158 381 381 LYS LYS A . n A 1 159 MET 159 382 382 MET MET A . n A 1 160 THR 160 383 383 THR THR A . n A 1 161 ALA 161 384 384 ALA ALA A . n A 1 162 LYS 162 385 385 LYS LYS A . n A 1 163 VAL 163 386 386 VAL VAL A . n A 1 164 VAL 164 387 387 VAL VAL A . n A 1 165 GLU 165 388 388 GLU GLU A . n A 1 166 SER 166 389 389 SER SER A . n A 1 167 ALA 167 390 390 ALA ALA A . n A 1 168 LYS 168 391 391 LYS LYS A . n A 1 169 ALA 169 392 392 ALA ALA A . n A 1 170 ILE 170 393 393 ILE ILE A . n A 1 171 LEU 171 394 394 LEU LEU A . n A 1 172 GLY 172 395 395 GLY GLY A . n A 1 173 GLY 173 396 396 GLY GLY A . n A 1 174 SER 174 397 397 SER SER A . n A 1 175 LYS 175 398 398 LYS ALA A . n A 1 176 VAL 176 399 399 VAL VAL A . n A 1 177 ARG 177 400 400 ARG ARG A . n A 1 178 VAL 178 401 401 VAL VAL A . n A 1 179 ASP 179 402 ? ? ? A . n A 1 180 GLN 180 403 ? ? ? A . n A 1 181 LYS 181 404 ? ? ? A . n A 1 182 CYS 182 405 ? ? ? A . n A 1 183 LYS 183 406 ? ? ? A . n A 1 184 SER 184 407 ? ? ? A . n A 1 185 SER 185 408 408 SER SER A . n A 1 186 ALA 186 409 409 ALA ALA A . n A 1 187 GLN 187 410 410 GLN GLN A . n A 1 188 ILE 188 411 411 ILE ILE A . n A 1 189 ASP 189 412 412 ASP ASP A . n A 1 190 PRO 190 413 413 PRO PRO A . n A 1 191 THR 191 414 414 THR THR A . n A 1 192 PRO 192 415 415 PRO PRO A . n A 1 193 VAL 193 416 416 VAL VAL A . n A 1 194 ILE 194 417 417 ILE ILE A . n A 1 195 VAL 195 418 418 VAL VAL A . n A 1 196 THR 196 419 419 THR THR A . n A 1 197 SER 197 420 420 SER SER A . n A 1 198 ASN 198 421 421 ASN ASN A . n A 1 199 THR 199 422 422 THR THR A . n A 1 200 ASN 200 423 423 ASN ASN A . n A 1 201 MET 201 424 424 MET MET A . n A 1 202 CYS 202 425 425 CYS CYS A . n A 1 203 ALA 203 426 426 ALA ALA A . n A 1 204 VAL 204 427 427 VAL VAL A . n A 1 205 ILE 205 428 428 ILE ILE A . n A 1 206 ASP 206 429 429 ASP ASP A . n A 1 207 GLY 207 430 430 GLY GLY A . n A 1 208 ASN 208 431 431 ASN ASN A . n A 1 209 SER 209 432 432 SER SER A . n A 1 210 THR 210 433 433 THR THR A . n A 1 211 THR 211 434 434 THR THR A . n A 1 212 PHE 212 435 435 PHE PHE A . n A 1 213 GLU 213 436 436 GLU GLU A . n A 1 214 HIS 214 437 437 HIS HIS A . n A 1 215 GLN 215 438 438 GLN GLN A . n A 1 216 GLN 216 439 439 GLN GLN A . n A 1 217 PRO 217 440 440 PRO PRO A . n A 1 218 LEU 218 441 441 LEU LEU A . n A 1 219 GLN 219 442 442 GLN GLN A . n A 1 220 ASP 220 443 443 ASP ASP A . n A 1 221 ARG 221 444 444 ARG ARG A . n A 1 222 MET 222 445 445 MET MET A . n A 1 223 PHE 223 446 446 PHE PHE A . n A 1 224 LYS 224 447 447 LYS LYS A . n A 1 225 PHE 225 448 448 PHE PHE A . n A 1 226 GLU 226 449 449 GLU GLU A . n A 1 227 LEU 227 450 450 LEU LEU A . n A 1 228 THR 228 451 451 THR THR A . n A 1 229 ARG 229 452 452 ARG ALA A . n A 1 230 ARG 230 453 453 ARG ALA A . n A 1 231 LEU 231 454 454 LEU LEU A . n A 1 232 ASP 232 455 455 ASP ASP A . n A 1 233 HIS 233 456 456 HIS HIS A . n A 1 234 ASP 234 457 457 ASP ASP A . n A 1 235 PHE 235 458 458 PHE PHE A . n A 1 236 GLY 236 459 459 GLY GLY A . n A 1 237 LYS 237 460 460 LYS LYS A . n A 1 238 VAL 238 461 461 VAL VAL A . n A 1 239 THR 239 462 462 THR THR A . n A 1 240 LYS 240 463 463 LYS LYS A . n A 1 241 GLN 241 464 464 GLN GLN A . n A 1 242 GLU 242 465 465 GLU GLU A . n A 1 243 VAL 243 466 466 VAL VAL A . n A 1 244 LYS 244 467 467 LYS LYS A . n A 1 245 ASP 245 468 468 ASP ASP A . n A 1 246 PHE 246 469 469 PHE PHE A . n A 1 247 PHE 247 470 470 PHE PHE A . n A 1 248 ARG 248 471 471 ARG ARG A . n A 1 249 TRP 249 472 472 TRP TRP A . n A 1 250 ALA 250 473 473 ALA ALA A . n A 1 251 LYS 251 474 474 LYS LYS A . n A 1 252 ASP 252 475 475 ASP ASP A . n A 1 253 HIS 253 476 476 HIS HIS A . n A 1 254 VAL 254 477 477 VAL VAL A . n A 1 255 VAL 255 478 478 VAL VAL A . n A 1 256 GLU 256 479 479 GLU GLU A . n A 1 257 VAL 257 480 480 VAL VAL A . n A 1 258 GLU 258 481 481 GLU GLU A . n A 1 259 HIS 259 482 482 HIS HIS A . n A 1 260 GLU 260 483 483 GLU GLU A . n A 1 261 PHE 261 484 484 PHE PHE A . n A 1 262 TYR 262 485 485 TYR TYR A . n A 1 263 VAL 263 486 486 VAL VAL A . n A 1 264 LYS 264 487 487 LYS LYS A . n A 1 265 LYS 265 488 488 LYS LYS A . n A 1 266 GLY 266 489 489 GLY GLY A . n A 1 267 GLY 267 490 490 GLY GLY A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ADP 1 491 491 ADP ADP A . C 3 HOH 1 1 1 HOH TIP A . C 3 HOH 2 2 2 HOH TIP A . C 3 HOH 3 3 3 HOH TIP A . C 3 HOH 4 4 4 HOH TIP A . C 3 HOH 5 5 5 HOH TIP A . C 3 HOH 6 6 6 HOH TIP A . C 3 HOH 7 7 7 HOH TIP A . C 3 HOH 8 8 8 HOH TIP A . C 3 HOH 9 9 9 HOH TIP A . C 3 HOH 10 10 10 HOH TIP A . C 3 HOH 11 11 11 HOH TIP A . C 3 HOH 12 12 12 HOH TIP A . C 3 HOH 13 13 13 HOH TIP A . C 3 HOH 14 14 14 HOH TIP A . C 3 HOH 15 15 15 HOH TIP A . C 3 HOH 16 16 16 HOH TIP A . C 3 HOH 17 17 17 HOH TIP A . C 3 HOH 18 18 18 HOH TIP A . C 3 HOH 19 19 19 HOH TIP A . C 3 HOH 20 20 20 HOH TIP A . C 3 HOH 21 21 21 HOH TIP A . C 3 HOH 22 22 22 HOH TIP A . C 3 HOH 23 23 23 HOH TIP A . C 3 HOH 24 24 24 HOH TIP A . C 3 HOH 25 25 25 HOH TIP A . C 3 HOH 26 26 26 HOH TIP A . C 3 HOH 27 27 27 HOH TIP A . C 3 HOH 28 28 28 HOH TIP A . C 3 HOH 29 29 29 HOH TIP A . C 3 HOH 30 30 30 HOH TIP A . C 3 HOH 31 31 31 HOH TIP A . C 3 HOH 32 32 32 HOH TIP A . C 3 HOH 33 33 33 HOH TIP A . C 3 HOH 34 34 34 HOH TIP A . C 3 HOH 35 35 35 HOH TIP A . C 3 HOH 36 36 36 HOH TIP A . C 3 HOH 37 37 37 HOH TIP A . C 3 HOH 38 38 38 HOH TIP A . C 3 HOH 39 39 39 HOH TIP A . C 3 HOH 40 40 40 HOH TIP A . C 3 HOH 41 41 41 HOH TIP A . C 3 HOH 42 42 42 HOH TIP A . C 3 HOH 43 43 43 HOH TIP A . C 3 HOH 44 44 44 HOH TIP A . C 3 HOH 45 45 45 HOH TIP A . C 3 HOH 46 46 46 HOH TIP A . C 3 HOH 47 47 47 HOH TIP A . C 3 HOH 48 48 48 HOH TIP A . C 3 HOH 49 49 49 HOH TIP A . C 3 HOH 50 50 50 HOH TIP A . C 3 HOH 51 51 51 HOH TIP A . C 3 HOH 52 52 52 HOH TIP A . C 3 HOH 53 53 53 HOH TIP A . C 3 HOH 54 54 54 HOH TIP A . C 3 HOH 55 55 55 HOH TIP A . C 3 HOH 56 56 56 HOH TIP A . C 3 HOH 57 57 57 HOH TIP A . C 3 HOH 58 58 58 HOH TIP A . C 3 HOH 59 59 59 HOH TIP A . C 3 HOH 60 60 60 HOH TIP A . C 3 HOH 61 61 61 HOH TIP A . C 3 HOH 62 62 62 HOH TIP A . C 3 HOH 63 63 63 HOH TIP A . C 3 HOH 64 64 64 HOH TIP A . C 3 HOH 65 65 65 HOH TIP A . C 3 HOH 66 66 66 HOH TIP A . C 3 HOH 67 67 67 HOH TIP A . C 3 HOH 68 68 68 HOH TIP A . C 3 HOH 69 69 69 HOH TIP A . C 3 HOH 70 70 70 HOH TIP A . C 3 HOH 71 71 71 HOH TIP A . C 3 HOH 72 72 72 HOH TIP A . C 3 HOH 73 73 73 HOH TIP A . C 3 HOH 74 74 74 HOH TIP A . C 3 HOH 75 75 75 HOH TIP A . C 3 HOH 76 76 76 HOH TIP A . C 3 HOH 77 77 77 HOH TIP A . C 3 HOH 78 78 78 HOH TIP A . C 3 HOH 79 79 79 HOH TIP A . C 3 HOH 80 80 80 HOH TIP A . C 3 HOH 81 81 81 HOH TIP A . C 3 HOH 82 82 82 HOH TIP A . C 3 HOH 83 83 83 HOH TIP A . C 3 HOH 84 84 84 HOH TIP A . C 3 HOH 85 85 85 HOH TIP A . C 3 HOH 86 86 86 HOH TIP A . C 3 HOH 87 87 87 HOH TIP A . C 3 HOH 88 88 88 HOH TIP A . C 3 HOH 89 89 89 HOH TIP A . C 3 HOH 90 90 90 HOH TIP A . C 3 HOH 91 91 91 HOH TIP A . C 3 HOH 92 92 92 HOH TIP A . C 3 HOH 93 93 93 HOH TIP A . C 3 HOH 94 94 94 HOH TIP A . C 3 HOH 95 95 95 HOH TIP A . C 3 HOH 96 96 96 HOH TIP A . C 3 HOH 97 97 97 HOH TIP A . C 3 HOH 98 98 98 HOH TIP A . C 3 HOH 99 99 99 HOH TIP A . C 3 HOH 100 100 100 HOH TIP A . C 3 HOH 101 101 101 HOH TIP A . C 3 HOH 102 102 102 HOH TIP A . C 3 HOH 103 103 103 HOH TIP A . C 3 HOH 104 104 104 HOH TIP A . C 3 HOH 105 105 105 HOH TIP A . C 3 HOH 106 106 106 HOH TIP A . C 3 HOH 107 107 107 HOH TIP A . C 3 HOH 108 109 109 HOH TIP A . C 3 HOH 109 110 110 HOH TIP A . C 3 HOH 110 111 111 HOH TIP A . C 3 HOH 111 112 112 HOH TIP A . C 3 HOH 112 113 113 HOH TIP A . C 3 HOH 113 114 114 HOH TIP A . C 3 HOH 114 115 115 HOH TIP A . C 3 HOH 115 116 116 HOH TIP A . C 3 HOH 116 117 117 HOH TIP A . C 3 HOH 117 118 118 HOH TIP A . C 3 HOH 118 119 119 HOH TIP A . C 3 HOH 119 120 120 HOH TIP A . C 3 HOH 120 121 121 HOH TIP A . C 3 HOH 121 122 122 HOH TIP A . C 3 HOH 122 123 123 HOH TIP A . C 3 HOH 123 124 124 HOH TIP A . C 3 HOH 124 125 125 HOH TIP A . C 3 HOH 125 126 126 HOH TIP A . C 3 HOH 126 127 127 HOH TIP A . C 3 HOH 127 128 128 HOH TIP A . C 3 HOH 128 129 129 HOH TIP A . C 3 HOH 129 130 130 HOH TIP A . C 3 HOH 130 131 131 HOH TIP A . C 3 HOH 131 132 132 HOH TIP A . C 3 HOH 132 133 133 HOH TIP A . C 3 HOH 133 134 134 HOH TIP A . C 3 HOH 134 135 135 HOH TIP A . C 3 HOH 135 136 136 HOH TIP A . C 3 HOH 136 137 137 HOH TIP A . C 3 HOH 137 138 138 HOH TIP A . C 3 HOH 138 139 139 HOH TIP A . C 3 HOH 139 140 140 HOH TIP A . C 3 HOH 140 141 141 HOH TIP A . C 3 HOH 141 142 142 HOH TIP A . C 3 HOH 142 143 143 HOH TIP A . C 3 HOH 143 144 144 HOH TIP A . C 3 HOH 144 145 145 HOH TIP A . C 3 HOH 145 146 146 HOH TIP A . C 3 HOH 146 147 147 HOH TIP A . C 3 HOH 147 148 148 HOH TIP A . C 3 HOH 148 149 149 HOH TIP A . C 3 HOH 149 150 150 HOH TIP A . C 3 HOH 150 151 151 HOH TIP A . C 3 HOH 151 152 152 HOH TIP A . C 3 HOH 152 153 153 HOH TIP A . C 3 HOH 153 154 154 HOH TIP A . C 3 HOH 154 155 155 HOH TIP A . C 3 HOH 155 156 156 HOH TIP A . C 3 HOH 156 157 157 HOH TIP A . C 3 HOH 157 158 158 HOH TIP A . C 3 HOH 158 159 159 HOH TIP A . C 3 HOH 159 160 160 HOH TIP A . C 3 HOH 160 161 161 HOH TIP A . C 3 HOH 161 162 162 HOH TIP A . C 3 HOH 162 163 163 HOH TIP A . C 3 HOH 163 164 164 HOH TIP A . C 3 HOH 164 165 165 HOH TIP A . C 3 HOH 165 166 166 HOH TIP A . C 3 HOH 166 167 167 HOH TIP A . C 3 HOH 167 168 168 HOH TIP A . C 3 HOH 168 169 169 HOH TIP A . C 3 HOH 169 170 170 HOH TIP A . C 3 HOH 170 171 171 HOH TIP A . C 3 HOH 171 172 172 HOH TIP A . C 3 HOH 172 173 173 HOH TIP A . C 3 HOH 173 174 174 HOH TIP A . C 3 HOH 174 175 175 HOH TIP A . C 3 HOH 175 176 176 HOH TIP A . C 3 HOH 176 177 177 HOH TIP A . C 3 HOH 177 178 178 HOH TIP A . C 3 HOH 178 179 179 HOH TIP A . C 3 HOH 179 180 180 HOH TIP A . C 3 HOH 180 181 181 HOH TIP A . C 3 HOH 181 182 182 HOH TIP A . C 3 HOH 182 183 183 HOH TIP A . C 3 HOH 183 184 184 HOH TIP A . C 3 HOH 184 185 185 HOH TIP A . C 3 HOH 185 186 186 HOH TIP A . C 3 HOH 186 187 187 HOH TIP A . C 3 HOH 187 188 188 HOH TIP A . C 3 HOH 188 189 189 HOH TIP A . C 3 HOH 189 190 190 HOH TIP A . C 3 HOH 190 191 191 HOH TIP A . C 3 HOH 191 192 192 HOH TIP A . C 3 HOH 192 193 193 HOH TIP A . C 3 HOH 193 194 194 HOH TIP A . C 3 HOH 194 195 195 HOH TIP A . C 3 HOH 195 196 196 HOH TIP A . C 3 HOH 196 197 197 HOH TIP A . C 3 HOH 197 198 198 HOH TIP A . C 3 HOH 198 199 199 HOH TIP A . C 3 HOH 199 200 200 HOH TIP A . C 3 HOH 200 201 201 HOH TIP A . C 3 HOH 201 202 202 HOH TIP A . C 3 HOH 202 203 203 HOH TIP A . C 3 HOH 203 204 204 HOH TIP A . C 3 HOH 204 205 205 HOH TIP A . C 3 HOH 205 206 206 HOH TIP A . C 3 HOH 206 207 207 HOH TIP A . C 3 HOH 207 208 208 HOH TIP A . C 3 HOH 208 209 209 HOH TIP A . C 3 HOH 209 210 210 HOH TIP A . C 3 HOH 210 211 211 HOH TIP A . C 3 HOH 211 212 212 HOH TIP A . C 3 HOH 212 213 213 HOH TIP A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2004-08-24 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2018-01-31 5 'Structure model' 1 4 2023-08-23 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Experimental preparation' 4 5 'Structure model' 'Data collection' 5 5 'Structure model' 'Database references' 6 5 'Structure model' 'Derived calculations' 7 5 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' exptl_crystal_grow 2 5 'Structure model' chem_comp_atom 3 5 'Structure model' chem_comp_bond 4 5 'Structure model' database_2 5 5 'Structure model' pdbx_initial_refinement_model 6 5 'Structure model' struct_ref_seq_dif 7 5 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_exptl_crystal_grow.temp' 2 5 'Structure model' '_database_2.pdbx_DOI' 3 5 'Structure model' '_database_2.pdbx_database_accession' 4 5 'Structure model' '_struct_ref_seq_dif.details' 5 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 6 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 7 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CNS refinement 1.1 ? 1 HKL-2000 'data reduction' . ? 2 NOVEL_R 'data scaling' . ? 3 CNS phasing . ? 4 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O A SER 408 ? ? N A ALA 409 ? ? 1.60 2 1 O A ASN 254 ? ? N A ALA 255 ? ? 1.67 3 1 N6 A ADP 491 ? ? O A HOH 40 ? ? 2.11 # loop_ _pdbx_validate_symm_contact.id _pdbx_validate_symm_contact.PDB_model_num _pdbx_validate_symm_contact.auth_atom_id_1 _pdbx_validate_symm_contact.auth_asym_id_1 _pdbx_validate_symm_contact.auth_comp_id_1 _pdbx_validate_symm_contact.auth_seq_id_1 _pdbx_validate_symm_contact.PDB_ins_code_1 _pdbx_validate_symm_contact.label_alt_id_1 _pdbx_validate_symm_contact.site_symmetry_1 _pdbx_validate_symm_contact.auth_atom_id_2 _pdbx_validate_symm_contact.auth_asym_id_2 _pdbx_validate_symm_contact.auth_comp_id_2 _pdbx_validate_symm_contact.auth_seq_id_2 _pdbx_validate_symm_contact.PDB_ins_code_2 _pdbx_validate_symm_contact.label_alt_id_2 _pdbx_validate_symm_contact.site_symmetry_2 _pdbx_validate_symm_contact.dist 1 1 OE2 A GLU 226 ? ? 1_555 OE2 A GLU 449 ? ? 2_654 1.62 2 1 OE2 A GLU 226 ? ? 1_555 CD A GLU 449 ? ? 2_654 2.08 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 C A ASN 254 ? ? N A ALA 255 ? ? 0.977 1.336 -0.359 0.023 Y 2 1 CB A SER 257 ? ? OG A SER 257 ? ? 1.332 1.418 -0.086 0.013 N 3 1 CB A ARG 260 ? ? CG A ARG 260 ? ? 1.021 1.521 -0.500 0.027 N 4 1 C A SER 408 ? ? N A ALA 409 ? ? 0.975 1.336 -0.361 0.023 Y # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 CA A ASN 254 ? ? C A ASN 254 ? ? N A ALA 255 ? ? 135.88 117.20 18.68 2.20 Y 2 1 O A ASN 254 ? ? C A ASN 254 ? ? N A ALA 255 ? ? 97.72 122.70 -24.98 1.60 Y 3 1 CA A SER 257 ? ? CB A SER 257 ? ? OG A SER 257 ? ? 138.24 111.20 27.04 2.70 N 4 1 CB A SER 259 ? ? CA A SER 259 ? ? C A SER 259 ? ? 123.89 110.10 13.79 1.90 N 5 1 CA A ARG 260 ? ? CB A ARG 260 ? ? CG A ARG 260 ? ? 168.65 113.40 55.25 2.20 N 6 1 CB A ARG 260 ? ? CG A ARG 260 ? ? CD A ARG 260 ? ? 79.62 111.60 -31.98 2.60 N 7 1 CA A PRO 289 ? ? N A PRO 289 ? ? CD A PRO 289 ? ? 88.50 111.70 -23.20 1.40 N 8 1 CA A SER 408 ? ? C A SER 408 ? ? N A ALA 409 ? ? 144.98 117.20 27.78 2.20 Y 9 1 O A SER 408 ? ? C A SER 408 ? ? N A ALA 409 ? ? 92.63 122.70 -30.07 1.60 Y 10 1 C A SER 408 ? ? N A ALA 409 ? ? CA A ALA 409 ? ? 169.51 121.70 47.81 2.50 Y # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASP A 246 ? ? -148.87 59.51 2 1 ASN A 254 ? ? -80.27 38.11 3 1 PHE A 324 ? ? -99.54 36.88 4 1 ASN A 423 ? ? -69.99 92.90 5 1 HIS A 476 ? ? -140.04 34.55 6 1 LYS A 488 ? ? -106.92 75.19 # _pdbx_validate_peptide_omega.id 1 _pdbx_validate_peptide_omega.PDB_model_num 1 _pdbx_validate_peptide_omega.auth_comp_id_1 SER _pdbx_validate_peptide_omega.auth_asym_id_1 A _pdbx_validate_peptide_omega.auth_seq_id_1 408 _pdbx_validate_peptide_omega.PDB_ins_code_1 ? _pdbx_validate_peptide_omega.label_alt_id_1 ? _pdbx_validate_peptide_omega.auth_comp_id_2 ALA _pdbx_validate_peptide_omega.auth_asym_id_2 A _pdbx_validate_peptide_omega.auth_seq_id_2 409 _pdbx_validate_peptide_omega.PDB_ins_code_2 ? _pdbx_validate_peptide_omega.label_alt_id_2 ? _pdbx_validate_peptide_omega.omega -80.88 # _pdbx_validate_main_chain_plane.id 1 _pdbx_validate_main_chain_plane.PDB_model_num 1 _pdbx_validate_main_chain_plane.auth_comp_id ASN _pdbx_validate_main_chain_plane.auth_asym_id A _pdbx_validate_main_chain_plane.auth_seq_id 254 _pdbx_validate_main_chain_plane.PDB_ins_code ? _pdbx_validate_main_chain_plane.label_alt_id ? _pdbx_validate_main_chain_plane.improper_torsion_angle -22.85 # loop_ _pdbx_validate_polymer_linkage.id _pdbx_validate_polymer_linkage.PDB_model_num _pdbx_validate_polymer_linkage.auth_atom_id_1 _pdbx_validate_polymer_linkage.auth_asym_id_1 _pdbx_validate_polymer_linkage.auth_comp_id_1 _pdbx_validate_polymer_linkage.auth_seq_id_1 _pdbx_validate_polymer_linkage.PDB_ins_code_1 _pdbx_validate_polymer_linkage.label_alt_id_1 _pdbx_validate_polymer_linkage.auth_atom_id_2 _pdbx_validate_polymer_linkage.auth_asym_id_2 _pdbx_validate_polymer_linkage.auth_comp_id_2 _pdbx_validate_polymer_linkage.auth_seq_id_2 _pdbx_validate_polymer_linkage.PDB_ins_code_2 _pdbx_validate_polymer_linkage.label_alt_id_2 _pdbx_validate_polymer_linkage.dist 1 1 C A ASN 254 ? ? N A ALA 255 ? ? 0.98 2 1 C A SER 408 ? ? N A ALA 409 ? ? 0.97 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A GLN 262 ? CG ? A GLN 39 CG 2 1 Y 1 A GLN 262 ? CD ? A GLN 39 CD 3 1 Y 1 A GLN 262 ? OE1 ? A GLN 39 OE1 4 1 Y 1 A GLN 262 ? NE2 ? A GLN 39 NE2 5 1 Y 1 A GLU 362 ? CG ? A GLU 139 CG 6 1 Y 1 A GLU 362 ? CD ? A GLU 139 CD 7 1 Y 1 A GLU 362 ? OE1 ? A GLU 139 OE1 8 1 Y 1 A GLU 362 ? OE2 ? A GLU 139 OE2 9 1 Y 1 A PHE 364 ? CG ? A PHE 141 CG 10 1 Y 1 A PHE 364 ? CD1 ? A PHE 141 CD1 11 1 Y 1 A PHE 364 ? CD2 ? A PHE 141 CD2 12 1 Y 1 A PHE 364 ? CE1 ? A PHE 141 CE1 13 1 Y 1 A PHE 364 ? CE2 ? A PHE 141 CE2 14 1 Y 1 A PHE 364 ? CZ ? A PHE 141 CZ 15 1 Y 1 A LYS 398 ? CG ? A LYS 175 CG 16 1 Y 1 A LYS 398 ? CD ? A LYS 175 CD 17 1 Y 1 A LYS 398 ? CE ? A LYS 175 CE 18 1 Y 1 A LYS 398 ? NZ ? A LYS 175 NZ 19 1 Y 1 A ARG 452 ? CG ? A ARG 229 CG 20 1 Y 1 A ARG 452 ? CD ? A ARG 229 CD 21 1 Y 1 A ARG 452 ? NE ? A ARG 229 NE 22 1 Y 1 A ARG 452 ? CZ ? A ARG 229 CZ 23 1 Y 1 A ARG 452 ? NH1 ? A ARG 229 NH1 24 1 Y 1 A ARG 452 ? NH2 ? A ARG 229 NH2 25 1 Y 1 A ARG 453 ? CG ? A ARG 230 CG 26 1 Y 1 A ARG 453 ? CD ? A ARG 230 CD 27 1 Y 1 A ARG 453 ? NE ? A ARG 230 NE 28 1 Y 1 A ARG 453 ? CZ ? A ARG 230 CZ 29 1 Y 1 A ARG 453 ? NH1 ? A ARG 230 NH1 30 1 Y 1 A ARG 453 ? NH2 ? A ARG 230 NH2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A ASP 402 ? A ASP 179 2 1 Y 1 A GLN 403 ? A GLN 180 3 1 Y 1 A LYS 404 ? A LYS 181 4 1 Y 1 A CYS 405 ? A CYS 182 5 1 Y 1 A LYS 406 ? A LYS 183 6 1 Y 1 A SER 407 ? A SER 184 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ADP PB P N N 1 ADP O1B O N N 2 ADP O2B O N N 3 ADP O3B O N N 4 ADP PA P N S 5 ADP O1A O N N 6 ADP O2A O N N 7 ADP O3A O N N 8 ADP "O5'" O N N 9 ADP "C5'" C N N 10 ADP "C4'" C N R 11 ADP "O4'" O N N 12 ADP "C3'" C N S 13 ADP "O3'" O N N 14 ADP "C2'" C N R 15 ADP "O2'" O N N 16 ADP "C1'" C N R 17 ADP N9 N Y N 18 ADP C8 C Y N 19 ADP N7 N Y N 20 ADP C5 C Y N 21 ADP C6 C Y N 22 ADP N6 N N N 23 ADP N1 N Y N 24 ADP C2 C Y N 25 ADP N3 N Y N 26 ADP C4 C Y N 27 ADP HOB2 H N N 28 ADP HOB3 H N N 29 ADP HOA2 H N N 30 ADP "H5'1" H N N 31 ADP "H5'2" H N N 32 ADP "H4'" H N N 33 ADP "H3'" H N N 34 ADP "HO3'" H N N 35 ADP "H2'" H N N 36 ADP "HO2'" H N N 37 ADP "H1'" H N N 38 ADP H8 H N N 39 ADP HN61 H N N 40 ADP HN62 H N N 41 ADP H2 H N N 42 ALA N N N N 43 ALA CA C N S 44 ALA C C N N 45 ALA O O N N 46 ALA CB C N N 47 ALA OXT O N N 48 ALA H H N N 49 ALA H2 H N N 50 ALA HA H N N 51 ALA HB1 H N N 52 ALA HB2 H N N 53 ALA HB3 H N N 54 ALA HXT H N N 55 ARG N N N N 56 ARG CA C N S 57 ARG C C N N 58 ARG O O N N 59 ARG CB C N N 60 ARG CG C N N 61 ARG CD C N N 62 ARG NE N N N 63 ARG CZ C N N 64 ARG NH1 N N N 65 ARG NH2 N N N 66 ARG OXT O N N 67 ARG H H N N 68 ARG H2 H N N 69 ARG HA H N N 70 ARG HB2 H N N 71 ARG HB3 H N N 72 ARG HG2 H N N 73 ARG HG3 H N N 74 ARG HD2 H N N 75 ARG HD3 H N N 76 ARG HE H N N 77 ARG HH11 H N N 78 ARG HH12 H N N 79 ARG HH21 H N N 80 ARG HH22 H N N 81 ARG HXT H N N 82 ASN N N N N 83 ASN CA C N S 84 ASN C C N N 85 ASN O O N N 86 ASN CB C N N 87 ASN CG C N N 88 ASN OD1 O N N 89 ASN ND2 N N N 90 ASN OXT O N N 91 ASN H H N N 92 ASN H2 H N N 93 ASN HA H N N 94 ASN HB2 H N N 95 ASN HB3 H N N 96 ASN HD21 H N N 97 ASN HD22 H N N 98 ASN HXT H N N 99 ASP N N N N 100 ASP CA C N S 101 ASP C C N N 102 ASP O O N N 103 ASP CB C N N 104 ASP CG C N N 105 ASP OD1 O N N 106 ASP OD2 O N N 107 ASP OXT O N N 108 ASP H H N N 109 ASP H2 H N N 110 ASP HA H N N 111 ASP HB2 H N N 112 ASP HB3 H N N 113 ASP HD2 H N N 114 ASP HXT H N N 115 CYS N N N N 116 CYS CA C N R 117 CYS C C N N 118 CYS O O N N 119 CYS CB C N N 120 CYS SG S N N 121 CYS OXT O N N 122 CYS H H N N 123 CYS H2 H N N 124 CYS HA H N N 125 CYS HB2 H N N 126 CYS HB3 H N N 127 CYS HG H N N 128 CYS HXT H N N 129 GLN N N N N 130 GLN CA C N S 131 GLN C C N N 132 GLN O O N N 133 GLN CB C N N 134 GLN CG C N N 135 GLN CD C N N 136 GLN OE1 O N N 137 GLN NE2 N N N 138 GLN OXT O N N 139 GLN H H N N 140 GLN H2 H N N 141 GLN HA H N N 142 GLN HB2 H N N 143 GLN HB3 H N N 144 GLN HG2 H N N 145 GLN HG3 H N N 146 GLN HE21 H N N 147 GLN HE22 H N N 148 GLN HXT H N N 149 GLU N N N N 150 GLU CA C N S 151 GLU C C N N 152 GLU O O N N 153 GLU CB C N N 154 GLU CG C N N 155 GLU CD C N N 156 GLU OE1 O N N 157 GLU OE2 O N N 158 GLU OXT O N N 159 GLU H H N N 160 GLU H2 H N N 161 GLU HA H N N 162 GLU HB2 H N N 163 GLU HB3 H N N 164 GLU HG2 H N N 165 GLU HG3 H N N 166 GLU HE2 H N N 167 GLU HXT H N N 168 GLY N N N N 169 GLY CA C N N 170 GLY C C N N 171 GLY O O N N 172 GLY OXT O N N 173 GLY H H N N 174 GLY H2 H N N 175 GLY HA2 H N N 176 GLY HA3 H N N 177 GLY HXT H N N 178 HIS N N N N 179 HIS CA C N S 180 HIS C C N N 181 HIS O O N N 182 HIS CB C N N 183 HIS CG C Y N 184 HIS ND1 N Y N 185 HIS CD2 C Y N 186 HIS CE1 C Y N 187 HIS NE2 N Y N 188 HIS OXT O N N 189 HIS H H N N 190 HIS H2 H N N 191 HIS HA H N N 192 HIS HB2 H N N 193 HIS HB3 H N N 194 HIS HD1 H N N 195 HIS HD2 H N N 196 HIS HE1 H N N 197 HIS HE2 H N N 198 HIS HXT H N N 199 HOH O O N N 200 HOH H1 H N N 201 HOH H2 H N N 202 ILE N N N N 203 ILE CA C N S 204 ILE C C N N 205 ILE O O N N 206 ILE CB C N S 207 ILE CG1 C N N 208 ILE CG2 C N N 209 ILE CD1 C N N 210 ILE OXT O N N 211 ILE H H N N 212 ILE H2 H N N 213 ILE HA H N N 214 ILE HB H N N 215 ILE HG12 H N N 216 ILE HG13 H N N 217 ILE HG21 H N N 218 ILE HG22 H N N 219 ILE HG23 H N N 220 ILE HD11 H N N 221 ILE HD12 H N N 222 ILE HD13 H N N 223 ILE HXT H N N 224 LEU N N N N 225 LEU CA C N S 226 LEU C C N N 227 LEU O O N N 228 LEU CB C N N 229 LEU CG C N N 230 LEU CD1 C N N 231 LEU CD2 C N N 232 LEU OXT O N N 233 LEU H H N N 234 LEU H2 H N N 235 LEU HA H N N 236 LEU HB2 H N N 237 LEU HB3 H N N 238 LEU HG H N N 239 LEU HD11 H N N 240 LEU HD12 H N N 241 LEU HD13 H N N 242 LEU HD21 H N N 243 LEU HD22 H N N 244 LEU HD23 H N N 245 LEU HXT H N N 246 LYS N N N N 247 LYS CA C N S 248 LYS C C N N 249 LYS O O N N 250 LYS CB C N N 251 LYS CG C N N 252 LYS CD C N N 253 LYS CE C N N 254 LYS NZ N N N 255 LYS OXT O N N 256 LYS H H N N 257 LYS H2 H N N 258 LYS HA H N N 259 LYS HB2 H N N 260 LYS HB3 H N N 261 LYS HG2 H N N 262 LYS HG3 H N N 263 LYS HD2 H N N 264 LYS HD3 H N N 265 LYS HE2 H N N 266 LYS HE3 H N N 267 LYS HZ1 H N N 268 LYS HZ2 H N N 269 LYS HZ3 H N N 270 LYS HXT H N N 271 MET N N N N 272 MET CA C N S 273 MET C C N N 274 MET O O N N 275 MET CB C N N 276 MET CG C N N 277 MET SD S N N 278 MET CE C N N 279 MET OXT O N N 280 MET H H N N 281 MET H2 H N N 282 MET HA H N N 283 MET HB2 H N N 284 MET HB3 H N N 285 MET HG2 H N N 286 MET HG3 H N N 287 MET HE1 H N N 288 MET HE2 H N N 289 MET HE3 H N N 290 MET HXT H N N 291 PHE N N N N 292 PHE CA C N S 293 PHE C C N N 294 PHE O O N N 295 PHE CB C N N 296 PHE CG C Y N 297 PHE CD1 C Y N 298 PHE CD2 C Y N 299 PHE CE1 C Y N 300 PHE CE2 C Y N 301 PHE CZ C Y N 302 PHE OXT O N N 303 PHE H H N N 304 PHE H2 H N N 305 PHE HA H N N 306 PHE HB2 H N N 307 PHE HB3 H N N 308 PHE HD1 H N N 309 PHE HD2 H N N 310 PHE HE1 H N N 311 PHE HE2 H N N 312 PHE HZ H N N 313 PHE HXT H N N 314 PRO N N N N 315 PRO CA C N S 316 PRO C C N N 317 PRO O O N N 318 PRO CB C N N 319 PRO CG C N N 320 PRO CD C N N 321 PRO OXT O N N 322 PRO H H N N 323 PRO HA H N N 324 PRO HB2 H N N 325 PRO HB3 H N N 326 PRO HG2 H N N 327 PRO HG3 H N N 328 PRO HD2 H N N 329 PRO HD3 H N N 330 PRO HXT H N N 331 SER N N N N 332 SER CA C N S 333 SER C C N N 334 SER O O N N 335 SER CB C N N 336 SER OG O N N 337 SER OXT O N N 338 SER H H N N 339 SER H2 H N N 340 SER HA H N N 341 SER HB2 H N N 342 SER HB3 H N N 343 SER HG H N N 344 SER HXT H N N 345 THR N N N N 346 THR CA C N S 347 THR C C N N 348 THR O O N N 349 THR CB C N R 350 THR OG1 O N N 351 THR CG2 C N N 352 THR OXT O N N 353 THR H H N N 354 THR H2 H N N 355 THR HA H N N 356 THR HB H N N 357 THR HG1 H N N 358 THR HG21 H N N 359 THR HG22 H N N 360 THR HG23 H N N 361 THR HXT H N N 362 TRP N N N N 363 TRP CA C N S 364 TRP C C N N 365 TRP O O N N 366 TRP CB C N N 367 TRP CG C Y N 368 TRP CD1 C Y N 369 TRP CD2 C Y N 370 TRP NE1 N Y N 371 TRP CE2 C Y N 372 TRP CE3 C Y N 373 TRP CZ2 C Y N 374 TRP CZ3 C Y N 375 TRP CH2 C Y N 376 TRP OXT O N N 377 TRP H H N N 378 TRP H2 H N N 379 TRP HA H N N 380 TRP HB2 H N N 381 TRP HB3 H N N 382 TRP HD1 H N N 383 TRP HE1 H N N 384 TRP HE3 H N N 385 TRP HZ2 H N N 386 TRP HZ3 H N N 387 TRP HH2 H N N 388 TRP HXT H N N 389 TYR N N N N 390 TYR CA C N S 391 TYR C C N N 392 TYR O O N N 393 TYR CB C N N 394 TYR CG C Y N 395 TYR CD1 C Y N 396 TYR CD2 C Y N 397 TYR CE1 C Y N 398 TYR CE2 C Y N 399 TYR CZ C Y N 400 TYR OH O N N 401 TYR OXT O N N 402 TYR H H N N 403 TYR H2 H N N 404 TYR HA H N N 405 TYR HB2 H N N 406 TYR HB3 H N N 407 TYR HD1 H N N 408 TYR HD2 H N N 409 TYR HE1 H N N 410 TYR HE2 H N N 411 TYR HH H N N 412 TYR HXT H N N 413 VAL N N N N 414 VAL CA C N S 415 VAL C C N N 416 VAL O O N N 417 VAL CB C N N 418 VAL CG1 C N N 419 VAL CG2 C N N 420 VAL OXT O N N 421 VAL H H N N 422 VAL H2 H N N 423 VAL HA H N N 424 VAL HB H N N 425 VAL HG11 H N N 426 VAL HG12 H N N 427 VAL HG13 H N N 428 VAL HG21 H N N 429 VAL HG22 H N N 430 VAL HG23 H N N 431 VAL HXT H N N 432 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ADP PB O1B doub N N 1 ADP PB O2B sing N N 2 ADP PB O3B sing N N 3 ADP PB O3A sing N N 4 ADP O2B HOB2 sing N N 5 ADP O3B HOB3 sing N N 6 ADP PA O1A doub N N 7 ADP PA O2A sing N N 8 ADP PA O3A sing N N 9 ADP PA "O5'" sing N N 10 ADP O2A HOA2 sing N N 11 ADP "O5'" "C5'" sing N N 12 ADP "C5'" "C4'" sing N N 13 ADP "C5'" "H5'1" sing N N 14 ADP "C5'" "H5'2" sing N N 15 ADP "C4'" "O4'" sing N N 16 ADP "C4'" "C3'" sing N N 17 ADP "C4'" "H4'" sing N N 18 ADP "O4'" "C1'" sing N N 19 ADP "C3'" "O3'" sing N N 20 ADP "C3'" "C2'" sing N N 21 ADP "C3'" "H3'" sing N N 22 ADP "O3'" "HO3'" sing N N 23 ADP "C2'" "O2'" sing N N 24 ADP "C2'" "C1'" sing N N 25 ADP "C2'" "H2'" sing N N 26 ADP "O2'" "HO2'" sing N N 27 ADP "C1'" N9 sing N N 28 ADP "C1'" "H1'" sing N N 29 ADP N9 C8 sing Y N 30 ADP N9 C4 sing Y N 31 ADP C8 N7 doub Y N 32 ADP C8 H8 sing N N 33 ADP N7 C5 sing Y N 34 ADP C5 C6 sing Y N 35 ADP C5 C4 doub Y N 36 ADP C6 N6 sing N N 37 ADP C6 N1 doub Y N 38 ADP N6 HN61 sing N N 39 ADP N6 HN62 sing N N 40 ADP N1 C2 sing Y N 41 ADP C2 N3 doub Y N 42 ADP C2 H2 sing N N 43 ADP N3 C4 sing Y N 44 ALA N CA sing N N 45 ALA N H sing N N 46 ALA N H2 sing N N 47 ALA CA C sing N N 48 ALA CA CB sing N N 49 ALA CA HA sing N N 50 ALA C O doub N N 51 ALA C OXT sing N N 52 ALA CB HB1 sing N N 53 ALA CB HB2 sing N N 54 ALA CB HB3 sing N N 55 ALA OXT HXT sing N N 56 ARG N CA sing N N 57 ARG N H sing N N 58 ARG N H2 sing N N 59 ARG CA C sing N N 60 ARG CA CB sing N N 61 ARG CA HA sing N N 62 ARG C O doub N N 63 ARG C OXT sing N N 64 ARG CB CG sing N N 65 ARG CB HB2 sing N N 66 ARG CB HB3 sing N N 67 ARG CG CD sing N N 68 ARG CG HG2 sing N N 69 ARG CG HG3 sing N N 70 ARG CD NE sing N N 71 ARG CD HD2 sing N N 72 ARG CD HD3 sing N N 73 ARG NE CZ sing N N 74 ARG NE HE sing N N 75 ARG CZ NH1 sing N N 76 ARG CZ NH2 doub N N 77 ARG NH1 HH11 sing N N 78 ARG NH1 HH12 sing N N 79 ARG NH2 HH21 sing N N 80 ARG NH2 HH22 sing N N 81 ARG OXT HXT sing N N 82 ASN N CA sing N N 83 ASN N H sing N N 84 ASN N H2 sing N N 85 ASN CA C sing N N 86 ASN CA CB sing N N 87 ASN CA HA sing N N 88 ASN C O doub N N 89 ASN C OXT sing N N 90 ASN CB CG sing N N 91 ASN CB HB2 sing N N 92 ASN CB HB3 sing N N 93 ASN CG OD1 doub N N 94 ASN CG ND2 sing N N 95 ASN ND2 HD21 sing N N 96 ASN ND2 HD22 sing N N 97 ASN OXT HXT sing N N 98 ASP N CA sing N N 99 ASP N H sing N N 100 ASP N H2 sing N N 101 ASP CA C sing N N 102 ASP CA CB sing N N 103 ASP CA HA sing N N 104 ASP C O doub N N 105 ASP C OXT sing N N 106 ASP CB CG sing N N 107 ASP CB HB2 sing N N 108 ASP CB HB3 sing N N 109 ASP CG OD1 doub N N 110 ASP CG OD2 sing N N 111 ASP OD2 HD2 sing N N 112 ASP OXT HXT sing N N 113 CYS N CA sing N N 114 CYS N H sing N N 115 CYS N H2 sing N N 116 CYS CA C sing N N 117 CYS CA CB sing N N 118 CYS CA HA sing N N 119 CYS C O doub N N 120 CYS C OXT sing N N 121 CYS CB SG sing N N 122 CYS CB HB2 sing N N 123 CYS CB HB3 sing N N 124 CYS SG HG sing N N 125 CYS OXT HXT sing N N 126 GLN N CA sing N N 127 GLN N H sing N N 128 GLN N H2 sing N N 129 GLN CA C sing N N 130 GLN CA CB sing N N 131 GLN CA HA sing N N 132 GLN C O doub N N 133 GLN C OXT sing N N 134 GLN CB CG sing N N 135 GLN CB HB2 sing N N 136 GLN CB HB3 sing N N 137 GLN CG CD sing N N 138 GLN CG HG2 sing N N 139 GLN CG HG3 sing N N 140 GLN CD OE1 doub N N 141 GLN CD NE2 sing N N 142 GLN NE2 HE21 sing N N 143 GLN NE2 HE22 sing N N 144 GLN OXT HXT sing N N 145 GLU N CA sing N N 146 GLU N H sing N N 147 GLU N H2 sing N N 148 GLU CA C sing N N 149 GLU CA CB sing N N 150 GLU CA HA sing N N 151 GLU C O doub N N 152 GLU C OXT sing N N 153 GLU CB CG sing N N 154 GLU CB HB2 sing N N 155 GLU CB HB3 sing N N 156 GLU CG CD sing N N 157 GLU CG HG2 sing N N 158 GLU CG HG3 sing N N 159 GLU CD OE1 doub N N 160 GLU CD OE2 sing N N 161 GLU OE2 HE2 sing N N 162 GLU OXT HXT sing N N 163 GLY N CA sing N N 164 GLY N H sing N N 165 GLY N H2 sing N N 166 GLY CA C sing N N 167 GLY CA HA2 sing N N 168 GLY CA HA3 sing N N 169 GLY C O doub N N 170 GLY C OXT sing N N 171 GLY OXT HXT sing N N 172 HIS N CA sing N N 173 HIS N H sing N N 174 HIS N H2 sing N N 175 HIS CA C sing N N 176 HIS CA CB sing N N 177 HIS CA HA sing N N 178 HIS C O doub N N 179 HIS C OXT sing N N 180 HIS CB CG sing N N 181 HIS CB HB2 sing N N 182 HIS CB HB3 sing N N 183 HIS CG ND1 sing Y N 184 HIS CG CD2 doub Y N 185 HIS ND1 CE1 doub Y N 186 HIS ND1 HD1 sing N N 187 HIS CD2 NE2 sing Y N 188 HIS CD2 HD2 sing N N 189 HIS CE1 NE2 sing Y N 190 HIS CE1 HE1 sing N N 191 HIS NE2 HE2 sing N N 192 HIS OXT HXT sing N N 193 HOH O H1 sing N N 194 HOH O H2 sing N N 195 ILE N CA sing N N 196 ILE N H sing N N 197 ILE N H2 sing N N 198 ILE CA C sing N N 199 ILE CA CB sing N N 200 ILE CA HA sing N N 201 ILE C O doub N N 202 ILE C OXT sing N N 203 ILE CB CG1 sing N N 204 ILE CB CG2 sing N N 205 ILE CB HB sing N N 206 ILE CG1 CD1 sing N N 207 ILE CG1 HG12 sing N N 208 ILE CG1 HG13 sing N N 209 ILE CG2 HG21 sing N N 210 ILE CG2 HG22 sing N N 211 ILE CG2 HG23 sing N N 212 ILE CD1 HD11 sing N N 213 ILE CD1 HD12 sing N N 214 ILE CD1 HD13 sing N N 215 ILE OXT HXT sing N N 216 LEU N CA sing N N 217 LEU N H sing N N 218 LEU N H2 sing N N 219 LEU CA C sing N N 220 LEU CA CB sing N N 221 LEU CA HA sing N N 222 LEU C O doub N N 223 LEU C OXT sing N N 224 LEU CB CG sing N N 225 LEU CB HB2 sing N N 226 LEU CB HB3 sing N N 227 LEU CG CD1 sing N N 228 LEU CG CD2 sing N N 229 LEU CG HG sing N N 230 LEU CD1 HD11 sing N N 231 LEU CD1 HD12 sing N N 232 LEU CD1 HD13 sing N N 233 LEU CD2 HD21 sing N N 234 LEU CD2 HD22 sing N N 235 LEU CD2 HD23 sing N N 236 LEU OXT HXT sing N N 237 LYS N CA sing N N 238 LYS N H sing N N 239 LYS N H2 sing N N 240 LYS CA C sing N N 241 LYS CA CB sing N N 242 LYS CA HA sing N N 243 LYS C O doub N N 244 LYS C OXT sing N N 245 LYS CB CG sing N N 246 LYS CB HB2 sing N N 247 LYS CB HB3 sing N N 248 LYS CG CD sing N N 249 LYS CG HG2 sing N N 250 LYS CG HG3 sing N N 251 LYS CD CE sing N N 252 LYS CD HD2 sing N N 253 LYS CD HD3 sing N N 254 LYS CE NZ sing N N 255 LYS CE HE2 sing N N 256 LYS CE HE3 sing N N 257 LYS NZ HZ1 sing N N 258 LYS NZ HZ2 sing N N 259 LYS NZ HZ3 sing N N 260 LYS OXT HXT sing N N 261 MET N CA sing N N 262 MET N H sing N N 263 MET N H2 sing N N 264 MET CA C sing N N 265 MET CA CB sing N N 266 MET CA HA sing N N 267 MET C O doub N N 268 MET C OXT sing N N 269 MET CB CG sing N N 270 MET CB HB2 sing N N 271 MET CB HB3 sing N N 272 MET CG SD sing N N 273 MET CG HG2 sing N N 274 MET CG HG3 sing N N 275 MET SD CE sing N N 276 MET CE HE1 sing N N 277 MET CE HE2 sing N N 278 MET CE HE3 sing N N 279 MET OXT HXT sing N N 280 PHE N CA sing N N 281 PHE N H sing N N 282 PHE N H2 sing N N 283 PHE CA C sing N N 284 PHE CA CB sing N N 285 PHE CA HA sing N N 286 PHE C O doub N N 287 PHE C OXT sing N N 288 PHE CB CG sing N N 289 PHE CB HB2 sing N N 290 PHE CB HB3 sing N N 291 PHE CG CD1 doub Y N 292 PHE CG CD2 sing Y N 293 PHE CD1 CE1 sing Y N 294 PHE CD1 HD1 sing N N 295 PHE CD2 CE2 doub Y N 296 PHE CD2 HD2 sing N N 297 PHE CE1 CZ doub Y N 298 PHE CE1 HE1 sing N N 299 PHE CE2 CZ sing Y N 300 PHE CE2 HE2 sing N N 301 PHE CZ HZ sing N N 302 PHE OXT HXT sing N N 303 PRO N CA sing N N 304 PRO N CD sing N N 305 PRO N H sing N N 306 PRO CA C sing N N 307 PRO CA CB sing N N 308 PRO CA HA sing N N 309 PRO C O doub N N 310 PRO C OXT sing N N 311 PRO CB CG sing N N 312 PRO CB HB2 sing N N 313 PRO CB HB3 sing N N 314 PRO CG CD sing N N 315 PRO CG HG2 sing N N 316 PRO CG HG3 sing N N 317 PRO CD HD2 sing N N 318 PRO CD HD3 sing N N 319 PRO OXT HXT sing N N 320 SER N CA sing N N 321 SER N H sing N N 322 SER N H2 sing N N 323 SER CA C sing N N 324 SER CA CB sing N N 325 SER CA HA sing N N 326 SER C O doub N N 327 SER C OXT sing N N 328 SER CB OG sing N N 329 SER CB HB2 sing N N 330 SER CB HB3 sing N N 331 SER OG HG sing N N 332 SER OXT HXT sing N N 333 THR N CA sing N N 334 THR N H sing N N 335 THR N H2 sing N N 336 THR CA C sing N N 337 THR CA CB sing N N 338 THR CA HA sing N N 339 THR C O doub N N 340 THR C OXT sing N N 341 THR CB OG1 sing N N 342 THR CB CG2 sing N N 343 THR CB HB sing N N 344 THR OG1 HG1 sing N N 345 THR CG2 HG21 sing N N 346 THR CG2 HG22 sing N N 347 THR CG2 HG23 sing N N 348 THR OXT HXT sing N N 349 TRP N CA sing N N 350 TRP N H sing N N 351 TRP N H2 sing N N 352 TRP CA C sing N N 353 TRP CA CB sing N N 354 TRP CA HA sing N N 355 TRP C O doub N N 356 TRP C OXT sing N N 357 TRP CB CG sing N N 358 TRP CB HB2 sing N N 359 TRP CB HB3 sing N N 360 TRP CG CD1 doub Y N 361 TRP CG CD2 sing Y N 362 TRP CD1 NE1 sing Y N 363 TRP CD1 HD1 sing N N 364 TRP CD2 CE2 doub Y N 365 TRP CD2 CE3 sing Y N 366 TRP NE1 CE2 sing Y N 367 TRP NE1 HE1 sing N N 368 TRP CE2 CZ2 sing Y N 369 TRP CE3 CZ3 doub Y N 370 TRP CE3 HE3 sing N N 371 TRP CZ2 CH2 doub Y N 372 TRP CZ2 HZ2 sing N N 373 TRP CZ3 CH2 sing Y N 374 TRP CZ3 HZ3 sing N N 375 TRP CH2 HH2 sing N N 376 TRP OXT HXT sing N N 377 TYR N CA sing N N 378 TYR N H sing N N 379 TYR N H2 sing N N 380 TYR CA C sing N N 381 TYR CA CB sing N N 382 TYR CA HA sing N N 383 TYR C O doub N N 384 TYR C OXT sing N N 385 TYR CB CG sing N N 386 TYR CB HB2 sing N N 387 TYR CB HB3 sing N N 388 TYR CG CD1 doub Y N 389 TYR CG CD2 sing Y N 390 TYR CD1 CE1 sing Y N 391 TYR CD1 HD1 sing N N 392 TYR CD2 CE2 doub Y N 393 TYR CD2 HD2 sing N N 394 TYR CE1 CZ doub Y N 395 TYR CE1 HE1 sing N N 396 TYR CE2 CZ sing Y N 397 TYR CE2 HE2 sing N N 398 TYR CZ OH sing N N 399 TYR OH HH sing N N 400 TYR OXT HXT sing N N 401 VAL N CA sing N N 402 VAL N H sing N N 403 VAL N H2 sing N N 404 VAL CA C sing N N 405 VAL CA CB sing N N 406 VAL CA HA sing N N 407 VAL C O doub N N 408 VAL C OXT sing N N 409 VAL CB CG1 sing N N 410 VAL CB CG2 sing N N 411 VAL CB HB sing N N 412 VAL CG1 HG11 sing N N 413 VAL CG1 HG12 sing N N 414 VAL CG1 HG13 sing N N 415 VAL CG2 HG21 sing N N 416 VAL CG2 HG22 sing N N 417 VAL CG2 HG23 sing N N 418 VAL OXT HXT sing N N 419 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 "ADENOSINE-5'-DIPHOSPHATE" ADP 3 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1S9H _pdbx_initial_refinement_model.details 'PDB entry 1S9H (chain B)' #