data_1U8B # _entry.id 1U8B # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.281 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 1U8B NDB PD0584 RCSB RCSB023371 WWPDB D_1000023371 # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1U8B _pdbx_database_status.recvd_initial_deposition_date 2004-08-05 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'He, C.' 1 'Hus, J.-C.' 2 'Sun, L.J.' 3 'Zhou, P.' 4 'Norman, D.P.G.' 5 'Dotsch, V.' 6 'Gross, J.D.' 7 'Lane, W.S.' 8 'Wagner, G.' 9 'Verdine, G.L.' 10 # _citation.id primary _citation.title 'A methylation-dependent electrostatic switch controls DNA repair and transcriptional activation by E. coli ada.' _citation.journal_abbrev Mol.Cell _citation.journal_volume 20 _citation.page_first 117 _citation.page_last 129 _citation.year 2005 _citation.journal_id_ASTM MOCEFL _citation.country US _citation.journal_id_ISSN 1097-2765 _citation.journal_id_CSD 2168 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 16209950 _citation.pdbx_database_id_DOI 10.1016/j.molcel.2005.08.013 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'He, C.' 1 primary 'Hus, J.C.' 2 primary 'Sun, L.J.' 3 primary 'Zhou, P.' 4 primary 'Norman, D.P.' 5 primary 'Dotsch, V.' 6 primary 'Wei, H.' 7 primary 'Gross, J.D.' 8 primary 'Lane, W.S.' 9 primary 'Wagner, G.' 10 primary 'Verdine, G.L.' 11 # _cell.entry_id 1U8B _cell.length_a 28.842 _cell.length_b 84.593 _cell.length_c 108.357 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1U8B _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "5'-D(*TP*AP*AP*AP*TP*T)-3'" 1807.241 1 ? ? ? ? 2 polymer syn "5'-D(P*AP*AP*TP*TP*T)-3'" 1494.035 1 ? ? ? ? 3 polymer syn "5'-D(P*AP*AP*AP*GP*CP*GP*CP*AP*AP*GP*AP*T)-3'" 3704.457 1 ? ? ? ? 4 polymer syn "5'-D(*AP*AP*TP*CP*TP*TP*GP*CP*GP*CP*TP*TP*T)-3'" 3932.570 1 ? ? ? ? 5 polymer man 'Ada polyprotein' 15429.200 1 ? ? ? ? 6 non-polymer syn 'ZINC ION' 65.409 1 ? ? ? ? 7 water nat water 18.015 91 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no no '(DT)(DA)(DA)(DA)(DT)(DT)' TAAATT B ? 2 polydeoxyribonucleotide no no '(DA)(DA)(DT)(DT)(DT)' AATTT C ? 3 polydeoxyribonucleotide no no '(DA)(DA)(DA)(DG)(DC)(DG)(DC)(DA)(DA)(DG)(DA)(DT)' AAAGCGCAAGAT D ? 4 polydeoxyribonucleotide no no '(DA)(DA)(DT)(DC)(DT)(DT)(DG)(DC)(DG)(DC)(DT)(DT)(DT)' AATCTTGCGCTTT E ? 5 'polypeptide(L)' no yes ;(MSE)KDDQRWQSVLARDPNADGEFVFAVRTTGIF(SMC)RPSCRARHALRENVSFYANASEALAAGFRPCKRCQPDKAN PRQHRLDKITHACRLLEQETPVTLEALADQVA(MSE)SPFHLHRLFKATTG(MSE)TPKAWQQAWRARR ; ;MKDDQRWQSVLARDPNADGEFVFAVRTTGIFCRPSCRARHALRENVSFYANASEALAAGFRPCKRCQPDKANPRQHRLDK ITHACRLLEQETPVTLEALADQVAMSPFHLHRLFKATTGMTPKAWQQAWRARR ; A ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DT n 1 2 DA n 1 3 DA n 1 4 DA n 1 5 DT n 1 6 DT n 2 1 DA n 2 2 DA n 2 3 DT n 2 4 DT n 2 5 DT n 3 1 DA n 3 2 DA n 3 3 DA n 3 4 DG n 3 5 DC n 3 6 DG n 3 7 DC n 3 8 DA n 3 9 DA n 3 10 DG n 3 11 DA n 3 12 DT n 4 1 DA n 4 2 DA n 4 3 DT n 4 4 DC n 4 5 DT n 4 6 DT n 4 7 DG n 4 8 DC n 4 9 DG n 4 10 DC n 4 11 DT n 4 12 DT n 4 13 DT n 5 1 MSE n 5 2 LYS n 5 3 ASP n 5 4 ASP n 5 5 GLN n 5 6 ARG n 5 7 TRP n 5 8 GLN n 5 9 SER n 5 10 VAL n 5 11 LEU n 5 12 ALA n 5 13 ARG n 5 14 ASP n 5 15 PRO n 5 16 ASN n 5 17 ALA n 5 18 ASP n 5 19 GLY n 5 20 GLU n 5 21 PHE n 5 22 VAL n 5 23 PHE n 5 24 ALA n 5 25 VAL n 5 26 ARG n 5 27 THR n 5 28 THR n 5 29 GLY n 5 30 ILE n 5 31 PHE n 5 32 SMC n 5 33 ARG n 5 34 PRO n 5 35 SER n 5 36 CYS n 5 37 ARG n 5 38 ALA n 5 39 ARG n 5 40 HIS n 5 41 ALA n 5 42 LEU n 5 43 ARG n 5 44 GLU n 5 45 ASN n 5 46 VAL n 5 47 SER n 5 48 PHE n 5 49 TYR n 5 50 ALA n 5 51 ASN n 5 52 ALA n 5 53 SER n 5 54 GLU n 5 55 ALA n 5 56 LEU n 5 57 ALA n 5 58 ALA n 5 59 GLY n 5 60 PHE n 5 61 ARG n 5 62 PRO n 5 63 CYS n 5 64 LYS n 5 65 ARG n 5 66 CYS n 5 67 GLN n 5 68 PRO n 5 69 ASP n 5 70 LYS n 5 71 ALA n 5 72 ASN n 5 73 PRO n 5 74 ARG n 5 75 GLN n 5 76 HIS n 5 77 ARG n 5 78 LEU n 5 79 ASP n 5 80 LYS n 5 81 ILE n 5 82 THR n 5 83 HIS n 5 84 ALA n 5 85 CYS n 5 86 ARG n 5 87 LEU n 5 88 LEU n 5 89 GLU n 5 90 GLN n 5 91 GLU n 5 92 THR n 5 93 PRO n 5 94 VAL n 5 95 THR n 5 96 LEU n 5 97 GLU n 5 98 ALA n 5 99 LEU n 5 100 ALA n 5 101 ASP n 5 102 GLN n 5 103 VAL n 5 104 ALA n 5 105 MSE n 5 106 SER n 5 107 PRO n 5 108 PHE n 5 109 HIS n 5 110 LEU n 5 111 HIS n 5 112 ARG n 5 113 LEU n 5 114 PHE n 5 115 LYS n 5 116 ALA n 5 117 THR n 5 118 THR n 5 119 GLY n 5 120 MSE n 5 121 THR n 5 122 PRO n 5 123 LYS n 5 124 ALA n 5 125 TRP n 5 126 GLN n 5 127 GLN n 5 128 ALA n 5 129 TRP n 5 130 ARG n 5 131 ALA n 5 132 ARG n 5 133 ARG n # _entity_src_gen.entity_id 5 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Escherichia _entity_src_gen.pdbx_gene_src_gene ADA _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 562 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 511693 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species 'Escherichia coli' _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain BL21 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name PET30A _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_align_begin _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_db_isoform 1 UNP ADA_ECOLI P06134 5 9 ;DDQRWQSVLARDPNADGEFVFAVRTTGIFCRPSCRARHALRENVSFYANASEALAAGFRPCKRCQPEKANAQQHRLDKIT HACRLLEQETPVTLEALADQVAMSPFHLHRLFKATTGMTPKAWQQAWRARR ; ? 2 PDB 1U8B 1U8B 1 ? ? ? 3 PDB 1U8B 1U8B 2 ? ? ? 4 PDB 1U8B 1U8B 3 ? ? ? 5 PDB 1U8B 1U8B 4 ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1U8B A 3 ? 133 ? P06134 9 ? 139 ? 9 139 2 2 1U8B B 1 ? 6 ? 1U8B 200 ? 205 ? 200 205 3 3 1U8B C 1 ? 5 ? 1U8B 301 ? 305 ? 301 305 4 4 1U8B D 1 ? 12 ? 1U8B 401 ? 412 ? 401 412 5 5 1U8B E 1 ? 13 ? 1U8B 500 ? 512 ? 500 512 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 1U8B MSE A 1 ? UNP P06134 ? ? 'CLONING ARTIFACT' 1 1 1 1U8B LYS A 2 ? UNP P06134 ? ? 'CLONING ARTIFACT' 2 2 1 1U8B ASP A 69 ? UNP P06134 GLU 75 CONFLICT 75 3 1 1U8B PRO A 73 ? UNP P06134 ALA 79 CONFLICT 79 4 1 1U8B ARG A 74 ? UNP P06134 GLN 80 CONFLICT 80 5 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SMC 'L-peptide linking' n S-METHYLCYSTEINE ? 'C4 H9 N O2 S' 135.185 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 ZN non-polymer . 'ZINC ION' ? 'Zn 2' 65.409 # _exptl.entry_id 1U8B _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.47 _exptl_crystal.density_percent_sol 50.23 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.30 _exptl_crystal_grow.pdbx_details ;100 mM sodium cacodylate, 100 mM NaCl, 50 mM magnesium chloride, 20% OEG 8000, pH 6.30, VAPOR DIFFUSION, HANGING DROP, temperature 298K ; _exptl_crystal_grow.pdbx_pH_range . # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 'sodium cacodylate' ? ? ? 1 2 1 NaCl ? ? ? 1 3 1 'magnesium chloride' ? ? ? 1 4 1 'PEG 8000' ? ? ? 1 5 1 H2O ? ? ? 1 6 2 'sodium cacodylate' ? ? ? 1 7 2 NaCl ? ? ? 1 8 2 'magnesium chloride' ? ? ? 1 9 2 'PEG 8000' ? ? ? 1 10 2 H2O ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 200.0 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type CUSTOM-MADE _diffrn_detector.pdbx_collection_date 2001-08-10 _diffrn_detector.details MIRRORS # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'SI-111 AND SI-220' _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.9793552 1.0 2 0.9796687 1.0 3 0.9537308 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 19-ID' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 19-ID _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list '0.9793552, 0.9796687, 0.9537308' # _reflns.entry_id 1U8B _reflns.observed_criterion_sigma_I 2.000 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 39.400 _reflns.d_resolution_high 2.100 _reflns.number_obs 26737 _reflns.number_all ? _reflns.percent_possible_obs 91.3 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.072 _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate 34.30 _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.10 _reflns_shell.d_res_low 2.18 _reflns_shell.percent_possible_all 64.7 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 0.474 _reflns_shell.meanI_over_sigI_obs 2.100 _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 1U8B _refine.ls_number_reflns_obs 21153 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 2.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 39.40 _refine.ls_d_res_high 2.10 _refine.ls_percent_reflns_obs 71.0 _refine.ls_R_factor_obs 0.235 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.235 _refine.ls_R_factor_R_free 0.274 _refine.ls_R_factor_R_free_error 0.009 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.700 _refine.ls_number_reflns_R_free 999 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 35.30 _refine.aniso_B[1][1] 15.32000 _refine.aniso_B[2][2] -4.11000 _refine.aniso_B[3][3] -11.20000 _refine.aniso_B[1][2] 0.00000 _refine.aniso_B[1][3] 0.00000 _refine.aniso_B[2][3] 0.00000 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.36 _refine.solvent_model_param_bsol 40.02 _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values 'ENGH & HUBER' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1020 _refine_hist.pdbx_number_atoms_nucleic_acid 699 _refine_hist.pdbx_number_atoms_ligand 1 _refine_hist.number_atoms_solvent 91 _refine_hist.number_atoms_total 1811 _refine_hist.d_res_high 2.10 _refine_hist.d_res_low 39.40 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.006 ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.10 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? c_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? c_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 2.10 _refine_ls_shell.d_res_low 2.18 _refine_ls_shell.number_reflns_R_work 1585 _refine_ls_shell.R_factor_R_work 0.2828 _refine_ls_shell.percent_reflns_obs 33.10 _refine_ls_shell.R_factor_R_free 0.3517 _refine_ls_shell.R_factor_R_free_error 0.036 _refine_ls_shell.percent_reflns_R_free 4.80 _refine_ls_shell.number_reflns_R_free 37 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 PROTEIN_REP.PARAM PROTEIN.TOP 'X-RAY DIFFRACTION' 2 DNA-RNA_REP.PARAM DNA-RNA.TOP 'X-RAY DIFFRACTION' 3 WATER_REP.PARAM WATER.TOP 'X-RAY DIFFRACTION' 4 ION.PARAM ION.TOP 'X-RAY DIFFRACTION' 5 ADA_2.PARAM ADA.TOP 'X-RAY DIFFRACTION' # _struct.entry_id 1U8B _struct.title 'Crystal structure of the methylated N-ADA/DNA complex' _struct.pdbx_descriptor 'Ada polyprotein/DNA Complex' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1U8B _struct_keywords.pdbx_keywords 'METAL BINDING PROTEIN/DNA' _struct_keywords.text 'PROTEIN-DNA COMPLEX, METHYLATION, ZINC, HELIX-TURN-HELIX, METAL BINDING PROTEIN-DNA COMPLEX' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? F N N 6 ? G N N 7 ? H N N 7 ? I N N 7 ? J N N 7 ? K N N 7 ? # _struct_biol.id 1 _struct_biol.pdbx_parent_biol_id ? _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 LYS E 2 ? ALA E 12 ? LYS A 2 ALA A 18 1 ? 11 HELX_P HELX_P2 2 ASP E 14 ? ASP E 18 ? ASP A 20 ASP A 24 5 ? 5 HELX_P HELX_P3 3 LEU E 42 ? GLU E 44 ? LEU A 48 GLU A 50 5 ? 3 HELX_P HELX_P4 4 ASN E 51 ? ALA E 58 ? ASN A 57 ALA A 64 1 ? 8 HELX_P HELX_P5 5 ASN E 72 ? LEU E 88 ? ASN A 78 LEU A 94 1 ? 17 HELX_P HELX_P6 6 THR E 95 ? ALA E 104 ? THR A 101 ALA A 110 1 ? 10 HELX_P HELX_P7 7 SER E 106 ? THR E 118 ? SER A 112 THR A 124 1 ? 13 HELX_P HELX_P8 8 THR E 121 ? ARG E 132 ? THR A 127 ARG A 138 1 ? 12 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? E MSE 1 C ? ? ? 1_555 E LYS 2 N ? ? A MSE 1 A LYS 2 1_555 ? ? ? ? ? ? ? 1.331 ? covale2 covale ? ? E PHE 31 C ? ? ? 1_555 E SMC 32 N ? ? A PHE 37 A SMC 38 1_555 ? ? ? ? ? ? ? 1.330 ? covale3 covale ? ? E SMC 32 C ? ? ? 1_555 E ARG 33 N ? ? A SMC 38 A ARG 39 1_555 ? ? ? ? ? ? ? 1.331 ? covale4 covale ? ? E ALA 104 C ? ? ? 1_555 E MSE 105 N ? ? A ALA 110 A MSE 111 1_555 ? ? ? ? ? ? ? 1.330 ? covale5 covale ? ? E MSE 105 C ? ? ? 1_555 E SER 106 N ? ? A MSE 111 A SER 112 1_555 ? ? ? ? ? ? ? 1.330 ? covale6 covale ? ? E GLY 119 C ? ? ? 1_555 E MSE 120 N ? ? A GLY 125 A MSE 126 1_555 ? ? ? ? ? ? ? 1.326 ? covale7 covale ? ? E MSE 120 C ? ? ? 1_555 E THR 121 N ? ? A MSE 126 A THR 127 1_555 ? ? ? ? ? ? ? 1.329 ? metalc1 metalc ? ? F ZN . ZN ? ? ? 1_555 E SMC 32 SG ? ? A ZN 150 A SMC 38 1_555 ? ? ? ? ? ? ? 2.473 ? metalc2 metalc ? ? F ZN . ZN ? ? ? 1_555 E CYS 66 SG ? ? A ZN 150 A CYS 72 1_555 ? ? ? ? ? ? ? 2.175 ? metalc3 metalc ? ? F ZN . ZN ? ? ? 1_555 E CYS 63 SG ? ? A ZN 150 A CYS 69 1_555 ? ? ? ? ? ? ? 2.290 ? metalc4 metalc ? ? F ZN . ZN ? ? ? 1_555 E CYS 36 SG ? ? A ZN 150 A CYS 42 1_555 ? ? ? ? ? ? ? 2.292 ? hydrog1 hydrog ? ? A DA 2 N1 ? ? ? 1_555 B DT 5 N3 ? ? B DA 201 C DT 305 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog2 hydrog ? ? A DA 2 N6 ? ? ? 1_555 B DT 5 O4 ? ? B DA 201 C DT 305 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog3 hydrog ? ? A DA 3 N1 ? ? ? 1_555 B DT 4 N3 ? ? B DA 202 C DT 304 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog4 hydrog ? ? A DA 3 N6 ? ? ? 1_555 B DT 4 O4 ? ? B DA 202 C DT 304 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog5 hydrog ? ? A DA 4 N1 ? ? ? 1_555 B DT 3 N3 ? ? B DA 203 C DT 303 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog6 hydrog ? ? A DA 4 N6 ? ? ? 1_555 B DT 3 O4 ? ? B DA 203 C DT 303 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog7 hydrog ? ? A DT 5 N3 ? ? ? 1_555 B DA 2 N1 ? ? B DT 204 C DA 302 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog8 hydrog ? ? A DT 5 O4 ? ? ? 1_555 B DA 2 N6 ? ? B DT 204 C DA 302 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog9 hydrog ? ? A DT 6 N3 ? ? ? 1_555 B DA 1 N1 ? ? B DT 205 C DA 301 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog10 hydrog ? ? A DT 6 O4 ? ? ? 1_555 B DA 1 N6 ? ? B DT 205 C DA 301 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog11 hydrog ? ? C DA 1 N1 ? ? ? 1_555 D DT 13 N3 ? ? D DA 401 E DT 512 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog12 hydrog ? ? C DA 1 N6 ? ? ? 1_555 D DT 13 O4 ? ? D DA 401 E DT 512 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog13 hydrog ? ? C DA 2 N1 ? ? ? 1_555 D DT 12 N3 ? ? D DA 402 E DT 511 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog14 hydrog ? ? C DA 2 N6 ? ? ? 1_555 D DT 12 O4 ? ? D DA 402 E DT 511 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog15 hydrog ? ? C DA 3 N1 ? ? ? 1_555 D DT 11 N3 ? ? D DA 403 E DT 510 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog16 hydrog ? ? C DA 3 N6 ? ? ? 1_555 D DT 11 O4 ? ? D DA 403 E DT 510 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog17 hydrog ? ? C DG 4 N1 ? ? ? 1_555 D DC 10 N3 ? ? D DG 404 E DC 509 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog18 hydrog ? ? C DG 4 N2 ? ? ? 1_555 D DC 10 O2 ? ? D DG 404 E DC 509 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog19 hydrog ? ? C DG 4 O6 ? ? ? 1_555 D DC 10 N4 ? ? D DG 404 E DC 509 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog20 hydrog ? ? C DC 5 N3 ? ? ? 1_555 D DG 9 N1 ? ? D DC 405 E DG 508 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog21 hydrog ? ? C DC 5 N4 ? ? ? 1_555 D DG 9 O6 ? ? D DC 405 E DG 508 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog22 hydrog ? ? C DC 5 O2 ? ? ? 1_555 D DG 9 N2 ? ? D DC 405 E DG 508 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog23 hydrog ? ? C DG 6 N1 ? ? ? 1_555 D DC 8 N3 ? ? D DG 406 E DC 507 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog24 hydrog ? ? C DG 6 N2 ? ? ? 1_555 D DC 8 O2 ? ? D DG 406 E DC 507 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog25 hydrog ? ? C DG 6 O6 ? ? ? 1_555 D DC 8 N4 ? ? D DG 406 E DC 507 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog26 hydrog ? ? C DC 7 N3 ? ? ? 1_555 D DG 7 N1 ? ? D DC 407 E DG 506 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog27 hydrog ? ? C DC 7 N4 ? ? ? 1_555 D DG 7 O6 ? ? D DC 407 E DG 506 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog28 hydrog ? ? C DC 7 O2 ? ? ? 1_555 D DG 7 N2 ? ? D DC 407 E DG 506 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog29 hydrog ? ? C DA 8 N1 ? ? ? 1_555 D DT 6 N3 ? ? D DA 408 E DT 505 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog30 hydrog ? ? C DA 8 N6 ? ? ? 1_555 D DT 6 O4 ? ? D DA 408 E DT 505 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog31 hydrog ? ? C DA 9 N1 ? ? ? 1_555 D DT 5 N3 ? ? D DA 409 E DT 504 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog32 hydrog ? ? C DA 9 N6 ? ? ? 1_555 D DT 5 O4 ? ? D DA 409 E DT 504 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog33 hydrog ? ? C DG 10 N1 ? ? ? 1_555 D DC 4 N3 ? ? D DG 410 E DC 503 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog34 hydrog ? ? C DG 10 N2 ? ? ? 1_555 D DC 4 O2 ? ? D DG 410 E DC 503 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog35 hydrog ? ? C DG 10 O6 ? ? ? 1_555 D DC 4 N4 ? ? D DG 410 E DC 503 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog36 hydrog ? ? C DA 11 N1 ? ? ? 1_555 D DT 3 N3 ? ? D DA 411 E DT 502 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog37 hydrog ? ? C DA 11 N6 ? ? ? 1_555 D DT 3 O4 ? ? D DA 411 E DT 502 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog38 hydrog ? ? C DT 12 N3 ? ? ? 1_555 D DA 2 N1 ? ? D DT 412 E DA 501 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog39 hydrog ? ? C DT 12 O4 ? ? ? 1_555 D DA 2 N6 ? ? D DT 412 E DA 501 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 4 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 VAL E 46 ? TYR E 49 ? VAL A 52 TYR A 55 A 2 VAL E 22 ? VAL E 25 ? VAL A 28 VAL A 31 A 3 ILE E 30 ? SMC E 32 ? ILE A 36 SMC A 38 A 4 ARG E 61 ? PRO E 62 ? ARG A 67 PRO A 68 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O SER E 47 ? O SER A 53 N ALA E 24 ? N ALA A 30 A 2 3 N VAL E 25 ? N VAL A 31 O ILE E 30 ? O ILE A 36 A 3 4 N PHE E 31 ? N PHE A 37 O ARG E 61 ? O ARG A 67 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id ? _struct_site.pdbx_auth_comp_id ? _struct_site.pdbx_auth_seq_id ? _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 4 _struct_site.details 'BINDING SITE FOR RESIDUE ZN A 150' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 SMC E 32 ? SMC A 38 . ? 1_555 ? 2 AC1 4 CYS E 36 ? CYS A 42 . ? 1_555 ? 3 AC1 4 CYS E 63 ? CYS A 69 . ? 1_555 ? 4 AC1 4 CYS E 66 ? CYS A 72 . ? 1_555 ? # _database_PDB_matrix.entry_id 1U8B _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1U8B _atom_sites.fract_transf_matrix[1][1] 0.034672 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.011821 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.009229 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S SE ZN # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DT 1 200 ? ? ? B . n A 1 2 DA 2 201 201 DA A B . n A 1 3 DA 3 202 202 DA A B . n A 1 4 DA 4 203 203 DA A B . n A 1 5 DT 5 204 204 DT T B . n A 1 6 DT 6 205 205 DT T B . n B 2 1 DA 1 301 301 DA A C . n B 2 2 DA 2 302 302 DA A C . n B 2 3 DT 3 303 303 DT T C . n B 2 4 DT 4 304 304 DT T C . n B 2 5 DT 5 305 305 DT T C . n C 3 1 DA 1 401 401 DA A D . n C 3 2 DA 2 402 402 DA A D . n C 3 3 DA 3 403 403 DA A D . n C 3 4 DG 4 404 404 DG G D . n C 3 5 DC 5 405 405 DC C D . n C 3 6 DG 6 406 406 DG G D . n C 3 7 DC 7 407 407 DC C D . n C 3 8 DA 8 408 408 DA A D . n C 3 9 DA 9 409 409 DA A D . n C 3 10 DG 10 410 410 DG G D . n C 3 11 DA 11 411 411 DA A D . n C 3 12 DT 12 412 412 DT T D . n D 4 1 DA 1 500 ? ? ? E . n D 4 2 DA 2 501 501 DA A E . n D 4 3 DT 3 502 502 DT T E . n D 4 4 DC 4 503 503 DC C E . n D 4 5 DT 5 504 504 DT T E . n D 4 6 DT 6 505 505 DT T E . n D 4 7 DG 7 506 506 DG G E . n D 4 8 DC 8 507 507 DC C E . n D 4 9 DG 9 508 508 DG G E . n D 4 10 DC 10 509 509 DC C E . n D 4 11 DT 11 510 510 DT T E . n D 4 12 DT 12 511 511 DT T E . n D 4 13 DT 13 512 512 DT T E . n E 5 1 MSE 1 1 1 MSE MSE A . n E 5 2 LYS 2 2 2 LYS LYS A . n E 5 3 ASP 3 9 9 ASP ASP A . n E 5 4 ASP 4 10 10 ASP ASP A . n E 5 5 GLN 5 11 11 GLN GLN A . n E 5 6 ARG 6 12 12 ARG ARG A . n E 5 7 TRP 7 13 13 TRP TRP A . n E 5 8 GLN 8 14 14 GLN GLN A . n E 5 9 SER 9 15 15 SER SER A . n E 5 10 VAL 10 16 16 VAL VAL A . n E 5 11 LEU 11 17 17 LEU LEU A . n E 5 12 ALA 12 18 18 ALA ALA A . n E 5 13 ARG 13 19 19 ARG ARG A . n E 5 14 ASP 14 20 20 ASP ASP A . n E 5 15 PRO 15 21 21 PRO PRO A . n E 5 16 ASN 16 22 22 ASN ASN A . n E 5 17 ALA 17 23 23 ALA ALA A . n E 5 18 ASP 18 24 24 ASP ASP A . n E 5 19 GLY 19 25 25 GLY GLY A . n E 5 20 GLU 20 26 26 GLU GLU A . n E 5 21 PHE 21 27 27 PHE PHE A . n E 5 22 VAL 22 28 28 VAL VAL A . n E 5 23 PHE 23 29 29 PHE PHE A . n E 5 24 ALA 24 30 30 ALA ALA A . n E 5 25 VAL 25 31 31 VAL VAL A . n E 5 26 ARG 26 32 32 ARG ARG A . n E 5 27 THR 27 33 33 THR THR A . n E 5 28 THR 28 34 34 THR THR A . n E 5 29 GLY 29 35 35 GLY GLY A . n E 5 30 ILE 30 36 36 ILE ILE A . n E 5 31 PHE 31 37 37 PHE PHE A . n E 5 32 SMC 32 38 38 SMC CYM A . n E 5 33 ARG 33 39 39 ARG ARG A . n E 5 34 PRO 34 40 40 PRO PRO A . n E 5 35 SER 35 41 41 SER SER A . n E 5 36 CYS 36 42 42 CYS CYS A . n E 5 37 ARG 37 43 43 ARG ARG A . n E 5 38 ALA 38 44 44 ALA ALA A . n E 5 39 ARG 39 45 45 ARG ARG A . n E 5 40 HIS 40 46 46 HIS HIS A . n E 5 41 ALA 41 47 47 ALA ALA A . n E 5 42 LEU 42 48 48 LEU LEU A . n E 5 43 ARG 43 49 49 ARG ARG A . n E 5 44 GLU 44 50 50 GLU GLU A . n E 5 45 ASN 45 51 51 ASN ASN A . n E 5 46 VAL 46 52 52 VAL VAL A . n E 5 47 SER 47 53 53 SER SER A . n E 5 48 PHE 48 54 54 PHE PHE A . n E 5 49 TYR 49 55 55 TYR TYR A . n E 5 50 ALA 50 56 56 ALA ALA A . n E 5 51 ASN 51 57 57 ASN ASN A . n E 5 52 ALA 52 58 58 ALA ALA A . n E 5 53 SER 53 59 59 SER SER A . n E 5 54 GLU 54 60 60 GLU GLU A . n E 5 55 ALA 55 61 61 ALA ALA A . n E 5 56 LEU 56 62 62 LEU LEU A . n E 5 57 ALA 57 63 63 ALA ALA A . n E 5 58 ALA 58 64 64 ALA ALA A . n E 5 59 GLY 59 65 65 GLY GLY A . n E 5 60 PHE 60 66 66 PHE PHE A . n E 5 61 ARG 61 67 67 ARG ARG A . n E 5 62 PRO 62 68 68 PRO PRO A . n E 5 63 CYS 63 69 69 CYS CYS A . n E 5 64 LYS 64 70 70 LYS LYS A . n E 5 65 ARG 65 71 71 ARG ARG A . n E 5 66 CYS 66 72 72 CYS CYS A . n E 5 67 GLN 67 73 73 GLN GLN A . n E 5 68 PRO 68 74 74 PRO PRO A . n E 5 69 ASP 69 75 75 ASP ASP A . n E 5 70 LYS 70 76 76 LYS LYS A . n E 5 71 ALA 71 77 77 ALA ALA A . n E 5 72 ASN 72 78 78 ASN ASN A . n E 5 73 PRO 73 79 79 PRO PRO A . n E 5 74 ARG 74 80 80 ARG ARG A . n E 5 75 GLN 75 81 81 GLN GLN A . n E 5 76 HIS 76 82 82 HIS HIS A . n E 5 77 ARG 77 83 83 ARG ARG A . n E 5 78 LEU 78 84 84 LEU LEU A . n E 5 79 ASP 79 85 85 ASP ASP A . n E 5 80 LYS 80 86 86 LYS LYS A . n E 5 81 ILE 81 87 87 ILE ILE A . n E 5 82 THR 82 88 88 THR THR A . n E 5 83 HIS 83 89 89 HIS HIS A . n E 5 84 ALA 84 90 90 ALA ALA A . n E 5 85 CYS 85 91 91 CYS CYS A . n E 5 86 ARG 86 92 92 ARG ARG A . n E 5 87 LEU 87 93 93 LEU LEU A . n E 5 88 LEU 88 94 94 LEU LEU A . n E 5 89 GLU 89 95 95 GLU GLU A . n E 5 90 GLN 90 96 96 GLN GLN A . n E 5 91 GLU 91 97 97 GLU GLU A . n E 5 92 THR 92 98 98 THR THR A . n E 5 93 PRO 93 99 99 PRO PRO A . n E 5 94 VAL 94 100 100 VAL VAL A . n E 5 95 THR 95 101 101 THR THR A . n E 5 96 LEU 96 102 102 LEU LEU A . n E 5 97 GLU 97 103 103 GLU GLU A . n E 5 98 ALA 98 104 104 ALA ALA A . n E 5 99 LEU 99 105 105 LEU LEU A . n E 5 100 ALA 100 106 106 ALA ALA A . n E 5 101 ASP 101 107 107 ASP ASP A . n E 5 102 GLN 102 108 108 GLN GLN A . n E 5 103 VAL 103 109 109 VAL VAL A . n E 5 104 ALA 104 110 110 ALA ALA A . n E 5 105 MSE 105 111 111 MSE MSE A . n E 5 106 SER 106 112 112 SER SER A . n E 5 107 PRO 107 113 113 PRO PRO A . n E 5 108 PHE 108 114 114 PHE PHE A . n E 5 109 HIS 109 115 115 HIS HIS A . n E 5 110 LEU 110 116 116 LEU LEU A . n E 5 111 HIS 111 117 117 HIS HIS A . n E 5 112 ARG 112 118 118 ARG ARG A . n E 5 113 LEU 113 119 119 LEU LEU A . n E 5 114 PHE 114 120 120 PHE PHE A . n E 5 115 LYS 115 121 121 LYS LYS A . n E 5 116 ALA 116 122 122 ALA ALA A . n E 5 117 THR 117 123 123 THR THR A . n E 5 118 THR 118 124 124 THR THR A . n E 5 119 GLY 119 125 125 GLY GLY A . n E 5 120 MSE 120 126 126 MSE MSE A . n E 5 121 THR 121 127 127 THR THR A . n E 5 122 PRO 122 128 128 PRO PRO A . n E 5 123 LYS 123 129 129 LYS LYS A . n E 5 124 ALA 124 130 130 ALA ALA A . n E 5 125 TRP 125 131 131 TRP TRP A . n E 5 126 GLN 126 132 132 GLN GLN A . n E 5 127 GLN 127 133 133 GLN GLN A . n E 5 128 ALA 128 134 134 ALA ALA A . n E 5 129 TRP 129 135 135 TRP TRP A . n E 5 130 ARG 130 136 136 ARG ARG A . n E 5 131 ALA 131 137 137 ALA ALA A . n E 5 132 ARG 132 138 138 ARG ARG A . n E 5 133 ARG 133 139 ? ? ? A . n # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 E MSE 1 A MSE 1 ? MET SELENOMETHIONINE 2 E SMC 32 A SMC 38 ? CYS S-METHYLCYSTEINE 3 E MSE 105 A MSE 111 ? MET SELENOMETHIONINE 4 E MSE 120 A MSE 126 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 SG ? E SMC 32 ? A SMC 38 ? 1_555 ZN ? F ZN . ? A ZN 150 ? 1_555 SG ? E CYS 66 ? A CYS 72 ? 1_555 109.7 ? 2 SG ? E SMC 32 ? A SMC 38 ? 1_555 ZN ? F ZN . ? A ZN 150 ? 1_555 SG ? E CYS 63 ? A CYS 69 ? 1_555 98.3 ? 3 SG ? E CYS 66 ? A CYS 72 ? 1_555 ZN ? F ZN . ? A ZN 150 ? 1_555 SG ? E CYS 63 ? A CYS 69 ? 1_555 116.8 ? 4 SG ? E SMC 32 ? A SMC 38 ? 1_555 ZN ? F ZN . ? A ZN 150 ? 1_555 SG ? E CYS 36 ? A CYS 42 ? 1_555 108.8 ? 5 SG ? E CYS 66 ? A CYS 72 ? 1_555 ZN ? F ZN . ? A ZN 150 ? 1_555 SG ? E CYS 36 ? A CYS 42 ? 1_555 106.0 ? 6 SG ? E CYS 63 ? A CYS 69 ? 1_555 ZN ? F ZN . ? A ZN 150 ? 1_555 SG ? E CYS 36 ? A CYS 42 ? 1_555 116.7 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2005-10-11 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal DENZO 'data reduction' . ? 1 SCALEPACK 'data scaling' . ? 2 CNS refinement . ? 3 CNS phasing . ? 4 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 OP2 _pdbx_validate_symm_contact.auth_asym_id_1 C _pdbx_validate_symm_contact.auth_comp_id_1 DA _pdbx_validate_symm_contact.auth_seq_id_1 301 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 "O3'" _pdbx_validate_symm_contact.auth_asym_id_2 E _pdbx_validate_symm_contact.auth_comp_id_2 DT _pdbx_validate_symm_contact.auth_seq_id_2 512 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 2_664 _pdbx_validate_symm_contact.dist 2.13 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 P C DA 301 ? ? OP3 C DA 301 ? ? 1.521 1.607 -0.086 0.012 N 2 1 P D DA 401 ? ? OP3 D DA 401 ? ? 1.526 1.607 -0.081 0.012 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER A 59 ? ? -26.85 -62.29 2 1 ARG A 80 ? ? -24.59 -75.22 3 1 ALA A 110 ? ? 60.35 64.28 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A LYS 2 ? CG ? E LYS 2 CG 2 1 Y 1 A LYS 2 ? CD ? E LYS 2 CD 3 1 Y 1 A LYS 2 ? CE ? E LYS 2 CE 4 1 Y 1 A LYS 2 ? NZ ? E LYS 2 NZ 5 1 Y 1 A SER 59 ? OG ? E SER 53 OG 6 1 Y 1 A GLN 73 ? CG ? E GLN 67 CG 7 1 Y 1 A GLN 73 ? CD ? E GLN 67 CD 8 1 Y 1 A GLN 73 ? OE1 ? E GLN 67 OE1 9 1 Y 1 A GLN 73 ? NE2 ? E GLN 67 NE2 10 1 Y 1 A LYS 76 ? CG ? E LYS 70 CG 11 1 Y 1 A LYS 76 ? CD ? E LYS 70 CD 12 1 Y 1 A LYS 76 ? CE ? E LYS 70 CE 13 1 Y 1 A LYS 76 ? NZ ? E LYS 70 NZ 14 1 Y 1 A ALA 77 ? CB ? E ALA 71 CB 15 1 Y 1 A ASN 78 ? CB ? E ASN 72 CB 16 1 Y 1 A ASN 78 ? CG ? E ASN 72 CG 17 1 Y 1 A ASN 78 ? OD1 ? E ASN 72 OD1 18 1 Y 1 A ASN 78 ? ND2 ? E ASN 72 ND2 19 1 Y 1 A ARG 80 ? CB ? E ARG 74 CB 20 1 Y 1 A ARG 80 ? CG ? E ARG 74 CG 21 1 Y 1 A ARG 80 ? CD ? E ARG 74 CD 22 1 Y 1 A ARG 80 ? NE ? E ARG 74 NE 23 1 Y 1 A ARG 80 ? CZ ? E ARG 74 CZ 24 1 Y 1 A ARG 80 ? NH1 ? E ARG 74 NH1 25 1 Y 1 A ARG 80 ? NH2 ? E ARG 74 NH2 26 1 Y 1 A ARG 83 ? CG ? E ARG 77 CG 27 1 Y 1 A ARG 83 ? CD ? E ARG 77 CD 28 1 Y 1 A ARG 83 ? NE ? E ARG 77 NE 29 1 Y 1 A ARG 83 ? CZ ? E ARG 77 CZ 30 1 Y 1 A ARG 83 ? NH1 ? E ARG 77 NH1 31 1 Y 1 A ARG 83 ? NH2 ? E ARG 77 NH2 32 1 Y 1 A ASP 107 ? CG ? E ASP 101 CG 33 1 Y 1 A ASP 107 ? OD1 ? E ASP 101 OD1 34 1 Y 1 A ASP 107 ? OD2 ? E ASP 101 OD2 35 1 Y 1 A ARG 138 ? CG ? E ARG 132 CG 36 1 Y 1 A ARG 138 ? CD ? E ARG 132 CD 37 1 Y 1 A ARG 138 ? NE ? E ARG 132 NE 38 1 Y 1 A ARG 138 ? CZ ? E ARG 132 CZ 39 1 Y 1 A ARG 138 ? NH1 ? E ARG 132 NH1 40 1 Y 1 A ARG 138 ? NH2 ? E ARG 132 NH2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 B DT 200 ? A DT 1 2 1 Y 1 E DA 500 ? D DA 1 3 1 Y 1 A ARG 139 ? E ARG 133 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1U8B 'double helix' 1U8B 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 B DA 1 1_555 A DT 6 1_555 -0.529 0.159 -0.177 -12.969 -11.683 7.856 1 C_DA301:DT205_B C 301 ? B 205 ? 20 1 1 B DA 2 1_555 A DT 5 1_555 0.121 0.045 -0.216 -6.569 -13.926 2.593 2 C_DA302:DT204_B C 302 ? B 204 ? 20 1 1 B DT 3 1_555 A DA 4 1_555 -0.072 -0.143 0.061 -10.830 -17.921 6.423 3 C_DT303:DA203_B C 303 ? B 203 ? 20 1 1 B DT 4 1_555 A DA 3 1_555 -0.375 0.023 -0.036 -8.831 -15.263 5.313 4 C_DT304:DA202_B C 304 ? B 202 ? 20 1 1 B DT 5 1_555 A DA 2 1_555 0.027 -0.054 -0.124 -3.577 -10.899 1.036 5 C_DT305:DA201_B C 305 ? B 201 ? 20 1 1 D DA 2 1_555 C DT 12 1_555 0.433 -0.125 -0.176 -2.417 -10.045 2.122 6 E_DA501:DT412_D E 501 ? D 412 ? 20 1 1 D DT 3 1_555 C DA 11 1_555 0.047 -0.141 0.135 4.560 -10.739 5.196 7 E_DT502:DA411_D E 502 ? D 411 ? 20 1 1 D DC 4 1_555 C DG 10 1_555 0.220 -0.230 -0.171 5.290 -13.046 -1.154 8 E_DC503:DG410_D E 503 ? D 410 ? 19 1 1 D DT 5 1_555 C DA 9 1_555 -0.437 -0.103 0.270 -1.812 -10.681 3.543 9 E_DT504:DA409_D E 504 ? D 409 ? 20 1 1 D DT 6 1_555 C DA 8 1_555 0.052 -0.074 0.160 -3.379 -11.962 0.380 10 E_DT505:DA408_D E 505 ? D 408 ? 20 1 1 D DG 7 1_555 C DC 7 1_555 0.089 0.020 0.062 -6.239 -6.297 5.460 11 E_DG506:DC407_D E 506 ? D 407 ? 19 1 1 D DC 8 1_555 C DG 6 1_555 -0.243 -0.361 -0.256 4.874 -7.330 0.987 12 E_DC507:DG406_D E 507 ? D 406 ? 19 1 1 D DG 9 1_555 C DC 5 1_555 -0.376 -0.281 0.187 8.660 -6.353 0.185 13 E_DG508:DC405_D E 508 ? D 405 ? 19 1 1 D DC 10 1_555 C DG 4 1_555 0.269 -0.205 0.085 3.606 -8.127 6.332 14 E_DC509:DG404_D E 509 ? D 404 ? 19 1 1 D DT 11 1_555 C DA 3 1_555 0.240 -0.086 0.206 -0.081 -14.857 3.534 15 E_DT510:DA403_D E 510 ? D 403 ? 20 1 1 D DT 12 1_555 C DA 2 1_555 -0.044 -0.260 0.113 -7.681 -13.133 -7.838 16 E_DT511:DA402_D E 511 ? D 402 ? 20 1 1 D DT 13 1_555 C DA 1 1_555 -0.015 -0.226 0.041 -3.591 -12.424 3.516 17 E_DT512:DA401_D E 512 ? D 401 ? 20 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 B DA 1 1_555 A DT 6 1_555 B DA 2 1_555 A DT 5 1_555 -0.409 -0.095 3.174 -0.090 -4.225 38.845 0.352 0.602 3.168 -6.329 0.135 39.066 1 CC_DA301DA302:DT204DT205_BB C 301 ? B 205 ? C 302 ? B 204 ? 1 B DA 2 1_555 A DT 5 1_555 B DT 3 1_555 A DA 4 1_555 -0.166 -0.567 3.360 -1.428 1.683 31.155 -1.380 0.032 3.330 3.128 2.655 31.231 2 CC_DA302DT303:DA203DT204_BB C 302 ? B 204 ? C 303 ? B 203 ? 1 B DT 3 1_555 A DA 4 1_555 B DT 4 1_555 A DA 3 1_555 0.372 -0.006 3.171 1.270 4.979 33.464 -0.790 -0.440 3.149 8.583 -2.190 33.845 3 CC_DT303DT304:DA202DA203_BB C 303 ? B 203 ? C 304 ? B 202 ? 1 B DT 4 1_555 A DA 3 1_555 B DT 5 1_555 A DA 2 1_555 -0.067 0.379 3.168 -0.663 3.042 34.893 0.184 0.015 3.190 5.060 1.103 35.027 4 CC_DT304DT305:DA201DA202_BB C 304 ? B 202 ? C 305 ? B 201 ? 1 B DT 5 1_555 A DA 2 1_555 D DA 2 1_555 C DT 12 1_555 -0.064 0.831 3.570 0.848 -5.852 -20.670 0.434 0.213 3.662 15.894 2.304 -21.490 5 CE_DT305DA501:DT412DA201_DB C 305 ? B 201 ? E 501 ? D 412 ? 1 D DA 2 1_555 C DT 12 1_555 D DT 3 1_555 C DA 11 1_555 0.361 -0.501 3.100 -0.646 -0.280 28.642 -0.952 -0.867 3.096 -0.566 1.305 28.650 6 EE_DA501DT502:DA411DT412_DD E 501 ? D 412 ? E 502 ? D 411 ? 1 D DT 3 1_555 C DA 11 1_555 D DC 4 1_555 C DG 10 1_555 -0.025 -0.394 3.226 1.356 -1.142 34.944 -0.485 0.244 3.234 -1.900 -2.257 34.988 7 EE_DT502DC503:DG410DA411_DD E 502 ? D 411 ? E 503 ? D 410 ? 1 D DC 4 1_555 C DG 10 1_555 D DT 5 1_555 C DA 9 1_555 0.186 -0.548 3.478 -1.600 0.569 35.969 -0.973 -0.542 3.458 0.921 2.589 36.008 8 EE_DC503DT504:DA409DG410_DD E 503 ? D 410 ? E 504 ? D 409 ? 1 D DT 5 1_555 C DA 9 1_555 D DT 6 1_555 C DA 8 1_555 -0.426 -0.429 3.282 0.927 -2.169 36.140 -0.384 0.816 3.290 -3.492 -1.493 36.214 9 EE_DT504DT505:DA408DA409_DD E 504 ? D 409 ? E 505 ? D 408 ? 1 D DT 6 1_555 C DA 8 1_555 D DG 7 1_555 C DC 7 1_555 0.265 0.219 3.274 -1.737 -0.464 42.876 0.345 -0.534 3.259 -0.634 2.374 42.912 10 EE_DT505DG506:DC407DA408_DD E 505 ? D 408 ? E 506 ? D 407 ? 1 D DG 7 1_555 C DC 7 1_555 D DC 8 1_555 C DG 6 1_555 -0.505 -0.449 3.041 0.540 1.465 29.218 -1.182 1.108 3.006 2.901 -1.069 29.258 11 EE_DG506DC507:DG406DC407_DD E 506 ? D 407 ? E 507 ? D 406 ? 1 D DC 8 1_555 C DG 6 1_555 D DG 9 1_555 C DC 5 1_555 0.119 0.938 3.328 -3.283 5.765 34.347 0.657 -0.713 3.411 9.650 5.496 34.963 12 EE_DC507DG508:DC405DG406_DD E 507 ? D 406 ? E 508 ? D 405 ? 1 D DG 9 1_555 C DC 5 1_555 D DC 10 1_555 C DG 4 1_555 0.199 -0.333 3.304 0.399 6.809 36.114 -1.459 -0.261 3.193 10.863 -0.636 36.732 13 EE_DG508DC509:DG404DC405_DD E 508 ? D 405 ? E 509 ? D 404 ? 1 D DC 10 1_555 C DG 4 1_555 D DT 11 1_555 C DA 3 1_555 -0.543 -0.375 3.346 0.340 6.085 34.884 -1.524 0.944 3.232 10.056 -0.562 35.396 14 EE_DC509DT510:DA403DG404_DD E 509 ? D 404 ? E 510 ? D 403 ? 1 D DT 11 1_555 C DA 3 1_555 D DT 12 1_555 C DA 2 1_555 -0.298 -0.667 3.374 -0.835 -2.687 37.693 -0.670 0.348 3.417 -4.152 1.290 37.794 15 EE_DT510DT511:DA402DA403_DD E 510 ? D 403 ? E 511 ? D 402 ? 1 D DT 12 1_555 C DA 2 1_555 D DT 13 1_555 C DA 1 1_555 0.190 -0.621 3.109 0.869 -4.498 35.291 -0.386 -0.189 3.166 -7.380 -1.426 35.578 16 EE_DT511DT512:DA401DA402_DD E 511 ? D 402 ? E 512 ? D 401 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 6 'ZINC ION' ZN 7 water HOH # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code F 6 ZN 1 150 150 ZN ZN A . G 7 HOH 1 2 2 HOH HOH B . G 7 HOH 2 19 19 HOH HOH B . G 7 HOH 3 28 28 HOH HOH B . G 7 HOH 4 32 32 HOH HOH B . G 7 HOH 5 38 38 HOH HOH B . G 7 HOH 6 50 50 HOH HOH B . H 7 HOH 1 4 4 HOH HOH C . H 7 HOH 2 5 5 HOH HOH C . H 7 HOH 3 14 14 HOH HOH C . H 7 HOH 4 24 24 HOH HOH C . H 7 HOH 5 31 31 HOH HOH C . H 7 HOH 6 34 34 HOH HOH C . H 7 HOH 7 37 37 HOH HOH C . H 7 HOH 8 45 45 HOH HOH C . H 7 HOH 9 47 47 HOH HOH C . H 7 HOH 10 48 48 HOH HOH C . H 7 HOH 11 63 63 HOH HOH C . H 7 HOH 12 89 89 HOH HOH C . I 7 HOH 1 7 7 HOH HOH D . I 7 HOH 2 17 17 HOH HOH D . I 7 HOH 3 20 20 HOH HOH D . I 7 HOH 4 23 23 HOH HOH D . I 7 HOH 5 27 27 HOH HOH D . I 7 HOH 6 29 29 HOH HOH D . I 7 HOH 7 35 35 HOH HOH D . I 7 HOH 8 36 36 HOH HOH D . I 7 HOH 9 61 61 HOH HOH D . I 7 HOH 10 65 65 HOH HOH D . I 7 HOH 11 66 66 HOH HOH D . I 7 HOH 12 80 80 HOH HOH D . I 7 HOH 13 83 83 HOH HOH D . J 7 HOH 1 8 8 HOH HOH E . J 7 HOH 2 10 10 HOH HOH E . J 7 HOH 3 12 12 HOH HOH E . J 7 HOH 4 30 30 HOH HOH E . J 7 HOH 5 33 33 HOH HOH E . J 7 HOH 6 52 52 HOH HOH E . J 7 HOH 7 59 59 HOH HOH E . J 7 HOH 8 64 64 HOH HOH E . J 7 HOH 9 81 81 HOH HOH E . J 7 HOH 10 82 82 HOH HOH E . J 7 HOH 11 86 86 HOH HOH E . K 7 HOH 1 151 1 HOH HOH A . K 7 HOH 2 152 3 HOH HOH A . K 7 HOH 3 153 6 HOH HOH A . K 7 HOH 4 154 9 HOH HOH A . K 7 HOH 5 155 11 HOH HOH A . K 7 HOH 6 156 13 HOH HOH A . K 7 HOH 7 157 15 HOH HOH A . K 7 HOH 8 158 16 HOH HOH A . K 7 HOH 9 159 18 HOH HOH A . K 7 HOH 10 160 21 HOH HOH A . K 7 HOH 11 161 22 HOH HOH A . K 7 HOH 12 162 26 HOH HOH A . K 7 HOH 13 163 39 HOH HOH A . K 7 HOH 14 164 40 HOH HOH A . K 7 HOH 15 165 41 HOH HOH A . K 7 HOH 16 166 42 HOH HOH A . K 7 HOH 17 167 43 HOH HOH A . K 7 HOH 18 168 44 HOH HOH A . K 7 HOH 19 169 46 HOH HOH A . K 7 HOH 20 170 49 HOH HOH A . K 7 HOH 21 171 51 HOH HOH A . K 7 HOH 22 172 53 HOH HOH A . K 7 HOH 23 173 54 HOH HOH A . K 7 HOH 24 174 55 HOH HOH A . K 7 HOH 25 175 56 HOH HOH A . K 7 HOH 26 176 57 HOH HOH A . K 7 HOH 27 177 58 HOH HOH A . K 7 HOH 28 178 60 HOH HOH A . K 7 HOH 29 179 62 HOH HOH A . K 7 HOH 30 180 67 HOH HOH A . K 7 HOH 31 181 68 HOH HOH A . K 7 HOH 32 182 69 HOH HOH A . K 7 HOH 33 183 70 HOH HOH A . K 7 HOH 34 184 71 HOH HOH A . K 7 HOH 35 185 72 HOH HOH A . K 7 HOH 36 186 73 HOH HOH A . K 7 HOH 37 187 74 HOH HOH A . K 7 HOH 38 188 75 HOH HOH A . K 7 HOH 39 189 76 HOH HOH A . K 7 HOH 40 190 77 HOH HOH A . K 7 HOH 41 191 78 HOH HOH A . K 7 HOH 42 192 79 HOH HOH A . K 7 HOH 43 193 84 HOH HOH A . K 7 HOH 44 194 85 HOH HOH A . K 7 HOH 45 195 87 HOH HOH A . K 7 HOH 46 196 88 HOH HOH A . K 7 HOH 47 197 90 HOH HOH A . K 7 HOH 48 198 91 HOH HOH A . K 7 HOH 49 199 92 HOH HOH A . #