HEADER DNA BINDING PROTEIN 09-MAY-03 1UE5 TITLE CRYSTAL STRUCTURE OF THE SINGLE-STRANDED DNA-BINDING PROTEIN FROM TITLE 2 MYCOBACTERIUM TUBERCULOSIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: SINGLE-STRAND BINDING PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: SINGLE-STRANDED DNA-BINDING PROTEIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 1773; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PET11D KEYWDS OLIGONUCLEOTIDE BINDING FOLD, DNA-BINDING PROTEIN, STRUCTURAL KEYWDS 2 GENOMICS, PSI, PROTEIN STRUCTURE INITIATIVE, TB STRUCTURAL GENOMICS KEYWDS 3 CONSORTIUM, TBSGC, DNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR K.SAIKRISHNAN,J.JEYAKANTHAN,J.VENKATESH,N.ACHARYA,K.SEKAR,U.VARSHNEY, AUTHOR 2 M.VIJAYAN,TB STRUCTURAL GENOMICS CONSORTIUM (TBSGC) REVDAT 5 25-OCT-23 1UE5 1 REMARK LINK REVDAT 4 13-JUL-11 1UE5 1 VERSN REVDAT 3 24-FEB-09 1UE5 1 VERSN REVDAT 2 01-FEB-05 1UE5 1 AUTHOR KEYWDS REMARK REVDAT 1 10-FEB-04 1UE5 0 JRNL AUTH K.SAIKRISHNAN,J.JEYAKANTHAN,J.VENKATESH,N.ACHARYA,K.SEKAR, JRNL AUTH 2 U.VARSHNEY,M.VIJAYAN JRNL TITL STRUCTURE OF MYCOBACTERIUM TUBERCULOSIS SINGLE-STRANDED JRNL TITL 2 DNA-BINDING PROTEIN. VARIABILITY IN QUATERNARY STRUCTURE AND JRNL TITL 3 ITS IMPLICATIONS JRNL REF J.MOL.BIOL. V. 331 385 2003 JRNL REFN ISSN 0022-2836 JRNL PMID 12888346 JRNL DOI 10.1016/S0022-2836(03)00729-0 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH K.SAIKRISHNAN,J.JEYAKANTHAN,J.VENKATESH,N.ACHARYA, REMARK 1 AUTH 2 K.PURNAPATRE,K.SEKAR,U.VARSHNEY,M.VIJAYAN REMARK 1 TITL CRYSTALLIZATION AND PRELIMINARY X-RAY STUDIES OF THE REMARK 1 TITL 2 SINGLE-STRANDED DNA-BINDING PROTEIN FROM MYCOBACTERIUM REMARK 1 TITL 3 TUBERCULOSIS. REMARK 1 REF ACTA CRYSTALLOGR.,SECT.D V. 58 327 2002 REMARK 1 REFN ISSN 0907-4449 REMARK 1 PMID 11807266 REMARK 1 DOI 10.1107/S090744490102008X REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 15.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 129944.960 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 92.8 REMARK 3 NUMBER OF REFLECTIONS : 8434 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.212 REMARK 3 FREE R VALUE : 0.275 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.600 REMARK 3 FREE R VALUE TEST SET COUNT : 890 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.009 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.76 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 1099 REMARK 3 BIN R VALUE (WORKING SET) : 0.3160 REMARK 3 BIN FREE R VALUE : 0.4450 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 10.80 REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.039 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1652 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 214 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 36.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 49.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -9.29000 REMARK 3 B22 (A**2) : -9.29000 REMARK 3 B33 (A**2) : 18.57000 REMARK 3 B12 (A**2) : 1.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.32 REMARK 3 ESD FROM SIGMAA (A) : 0.42 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.45 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.61 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 1.600 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 26.20 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.770 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 6.020 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 9.210 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 8.750 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 12.080; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.32 REMARK 3 BSOL : 61.89 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : ION.TOP REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: A LARGE NUMBER OF THE ISOLATED WATER REMARK 3 MOLECULES REPRESENT THE DISCREET AND ISOLATED ELECTRON DENSITIES, REMARK 3 WHICH MAY CORRESPOND TO THE UNDEFINED REGIONS OF THE REMARK 3 POLYPEPTIDE CHAIN PRIMARILY AT THE C-TERMINUS AND THE LOOPS REMARK 4 REMARK 4 1UE5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 16-MAY-03. REMARK 100 THE DEPOSITION ID IS D_1000005721. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-DEC-00 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU200 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 9072 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.10900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.5 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 1UE1 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.66 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.73 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1M SODIUM ACETATE, 500MM SODIUN REMARK 280 CHLORIDE, 50MM CADMIUM SULPHATE, 20MM TRIS-HCL, PH 7.4, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 26.13467 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 52.26933 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 52.26933 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 26.13467 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 9180 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24200 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -67.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 137.67033 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 52.26933 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ARG A 42 REMARK 465 GLN A 43 REMARK 465 THR A 44 REMARK 465 GLY A 45 REMARK 465 SER A 121 REMARK 465 ARG A 122 REMARK 465 SER A 123 REMARK 465 GLY A 124 REMARK 465 GLY A 125 REMARK 465 PHE A 126 REMARK 465 GLY A 127 REMARK 465 SER A 128 REMARK 465 GLY A 129 REMARK 465 SER A 130 REMARK 465 ARG A 131 REMARK 465 PRO A 132 REMARK 465 ALA A 133 REMARK 465 PRO A 134 REMARK 465 ALA A 135 REMARK 465 GLN A 136 REMARK 465 THR A 137 REMARK 465 SER A 138 REMARK 465 SER A 139 REMARK 465 ALA A 140 REMARK 465 SER A 141 REMARK 465 GLY A 142 REMARK 465 ASP A 143 REMARK 465 ASP A 144 REMARK 465 PRO A 145 REMARK 465 TRP A 146 REMARK 465 GLY A 147 REMARK 465 SER A 148 REMARK 465 ALA A 149 REMARK 465 PRO A 150 REMARK 465 ALA A 151 REMARK 465 SER A 152 REMARK 465 GLY A 153 REMARK 465 SER A 154 REMARK 465 PHE A 155 REMARK 465 GLY A 156 REMARK 465 GLY A 157 REMARK 465 GLY A 158 REMARK 465 ASP A 159 REMARK 465 ASP A 160 REMARK 465 GLU A 161 REMARK 465 PRO A 162 REMARK 465 PRO A 163 REMARK 465 PHE A 164 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 GLY B 45 REMARK 465 PHE B 88 REMARK 465 GLU B 89 REMARK 465 THR B 90 REMARK 465 ARG B 91 REMARK 465 GLU B 92 REMARK 465 GLY B 93 REMARK 465 GLU B 94 REMARK 465 LYS B 95 REMARK 465 SER B 121 REMARK 465 ARG B 122 REMARK 465 SER B 123 REMARK 465 GLY B 124 REMARK 465 GLY B 125 REMARK 465 PHE B 126 REMARK 465 GLY B 127 REMARK 465 SER B 128 REMARK 465 GLY B 129 REMARK 465 SER B 130 REMARK 465 ARG B 131 REMARK 465 PRO B 132 REMARK 465 ALA B 133 REMARK 465 PRO B 134 REMARK 465 ALA B 135 REMARK 465 GLN B 136 REMARK 465 THR B 137 REMARK 465 SER B 138 REMARK 465 SER B 139 REMARK 465 ALA B 140 REMARK 465 SER B 141 REMARK 465 GLY B 142 REMARK 465 ASP B 143 REMARK 465 ASP B 144 REMARK 465 PRO B 145 REMARK 465 TRP B 146 REMARK 465 GLY B 147 REMARK 465 SER B 148 REMARK 465 ALA B 149 REMARK 465 PRO B 150 REMARK 465 ALA B 151 REMARK 465 SER B 152 REMARK 465 GLY B 153 REMARK 465 SER B 154 REMARK 465 PHE B 155 REMARK 465 GLY B 156 REMARK 465 GLY B 157 REMARK 465 GLY B 158 REMARK 465 ASP B 159 REMARK 465 ASP B 160 REMARK 465 GLU B 161 REMARK 465 PRO B 162 REMARK 465 PRO B 163 REMARK 465 PHE B 164 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ILE A 39 CG1 CG2 CD1 REMARK 470 TYR A 40 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLU A 46 CB CG CD OE1 OE2 REMARK 470 TRP A 47 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP A 47 CZ3 CH2 REMARK 470 LYS A 48 CG CD CE NZ REMARK 470 GLU A 51 CG CD OE1 OE2 REMARK 470 ARG A 91 CG CD NE CZ NH1 NH2 REMARK 470 ASN A 118 CG OD1 ND2 REMARK 470 TYR B 40 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ASP B 41 CG OD1 OD2 REMARK 470 ARG B 42 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 43 CG CD OE1 NE2 REMARK 470 THR B 44 OG1 CG2 REMARK 470 GLU B 46 CB CG CD OE1 OE2 REMARK 470 TRP B 47 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP B 47 CZ3 CH2 REMARK 470 GLU B 51 CG CD OE1 OE2 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 TRP A 60 CZ2 REMARK 480 TRP B 60 CZ2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 37 C - N - CA ANGL. DEV. = 13.0 DEGREES REMARK 500 PRO B 37 C - N - CA ANGL. DEV. = 11.5 DEGREES REMARK 500 THR B 44 N - CA - C ANGL. DEV. = 16.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 4 178.19 68.58 REMARK 500 THR A 5 83.74 25.56 REMARK 500 PRO A 37 -178.69 -47.98 REMARK 500 ARG A 38 -139.78 -60.92 REMARK 500 ILE A 39 -161.07 -175.63 REMARK 500 TYR A 40 161.56 169.49 REMARK 500 TRP A 47 111.20 73.69 REMARK 500 GLU A 51 -93.91 61.45 REMARK 500 ALA A 52 137.25 89.69 REMARK 500 ARG A 61 -141.97 54.96 REMARK 500 PHE A 88 -168.29 -112.83 REMARK 500 GLU A 89 -147.98 -177.31 REMARK 500 THR A 90 142.53 69.97 REMARK 500 ARG A 91 2.58 -42.19 REMARK 500 GLU A 94 151.39 159.15 REMARK 500 LYS A 95 117.18 8.01 REMARK 500 ALA A 115 135.24 -174.60 REMARK 500 ALA B 15 168.89 175.22 REMARK 500 PRO B 37 179.38 -56.59 REMARK 500 TYR B 40 -159.84 -143.37 REMARK 500 ASP B 41 -19.87 -173.32 REMARK 500 ARG B 42 106.03 48.93 REMARK 500 GLN B 43 30.96 73.21 REMARK 500 ALA B 52 111.37 70.38 REMARK 500 ARG B 61 -147.71 45.30 REMARK 500 ARG B 86 -161.61 -78.12 REMARK 500 THR B 97 108.93 66.95 REMARK 500 ALA B 115 140.43 -170.62 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD B 401 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 100 OE1 REMARK 620 2 GLU A 100 OE2 51.0 REMARK 620 3 GLU B 62 OE1 99.5 58.6 REMARK 620 4 GLU B 62 OE2 140.0 91.7 63.9 REMARK 620 5 GLU B 65 OE1 104.5 111.8 69.5 102.7 REMARK 620 6 GLU B 65 OE2 122.8 167.1 116.8 96.6 56.7 REMARK 620 7 HOH B 402 O 106.9 131.9 150.1 86.7 115.4 58.8 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD B 400 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 198 O REMARK 620 2 ASP B 16 OD1 138.5 REMARK 620 3 ASP B 16 OD2 93.3 50.0 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD B 400 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD B 401 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1UE1 RELATED DB: PDB REMARK 900 THE SAME PROTEIN WITH ZINC REMARK 900 RELATED ID: 1UE6 RELATED DB: PDB REMARK 900 THE SAME PROTEIN WITHOUT LIGAND AT 2.7 REMARK 900 RELATED ID: 1UE7 RELATED DB: PDB REMARK 900 THE SAME PROTEIN WITHOUT LIGAND AT 3.2 REMARK 900 RELATED ID: RV0054 RELATED DB: TARGETDB DBREF 1UE5 A 1 164 UNP P0A610 SSB_MYCTU 1 164 DBREF 1UE5 B 1 164 UNP P0A610 SSB_MYCTU 1 164 SEQRES 1 A 164 MET ALA GLY ASP THR THR ILE THR ILE VAL GLY ASN LEU SEQRES 2 A 164 THR ALA ASP PRO GLU LEU ARG PHE THR PRO SER GLY ALA SEQRES 3 A 164 ALA VAL ALA ASN PHE THR VAL ALA SER THR PRO ARG ILE SEQRES 4 A 164 TYR ASP ARG GLN THR GLY GLU TRP LYS ASP GLY GLU ALA SEQRES 5 A 164 LEU PHE LEU ARG CYS ASN ILE TRP ARG GLU ALA ALA GLU SEQRES 6 A 164 ASN VAL ALA GLU SER LEU THR ARG GLY ALA ARG VAL ILE SEQRES 7 A 164 VAL SER GLY ARG LEU LYS GLN ARG SER PHE GLU THR ARG SEQRES 8 A 164 GLU GLY GLU LYS ARG THR VAL ILE GLU VAL GLU VAL ASP SEQRES 9 A 164 GLU ILE GLY PRO SER LEU ARG TYR ALA THR ALA LYS VAL SEQRES 10 A 164 ASN LYS ALA SER ARG SER GLY GLY PHE GLY SER GLY SER SEQRES 11 A 164 ARG PRO ALA PRO ALA GLN THR SER SER ALA SER GLY ASP SEQRES 12 A 164 ASP PRO TRP GLY SER ALA PRO ALA SER GLY SER PHE GLY SEQRES 13 A 164 GLY GLY ASP ASP GLU PRO PRO PHE SEQRES 1 B 164 MET ALA GLY ASP THR THR ILE THR ILE VAL GLY ASN LEU SEQRES 2 B 164 THR ALA ASP PRO GLU LEU ARG PHE THR PRO SER GLY ALA SEQRES 3 B 164 ALA VAL ALA ASN PHE THR VAL ALA SER THR PRO ARG ILE SEQRES 4 B 164 TYR ASP ARG GLN THR GLY GLU TRP LYS ASP GLY GLU ALA SEQRES 5 B 164 LEU PHE LEU ARG CYS ASN ILE TRP ARG GLU ALA ALA GLU SEQRES 6 B 164 ASN VAL ALA GLU SER LEU THR ARG GLY ALA ARG VAL ILE SEQRES 7 B 164 VAL SER GLY ARG LEU LYS GLN ARG SER PHE GLU THR ARG SEQRES 8 B 164 GLU GLY GLU LYS ARG THR VAL ILE GLU VAL GLU VAL ASP SEQRES 9 B 164 GLU ILE GLY PRO SER LEU ARG TYR ALA THR ALA LYS VAL SEQRES 10 B 164 ASN LYS ALA SER ARG SER GLY GLY PHE GLY SER GLY SER SEQRES 11 B 164 ARG PRO ALA PRO ALA GLN THR SER SER ALA SER GLY ASP SEQRES 12 B 164 ASP PRO TRP GLY SER ALA PRO ALA SER GLY SER PHE GLY SEQRES 13 B 164 GLY GLY ASP ASP GLU PRO PRO PHE HET CD B 400 1 HET CD B 401 1 HETNAM CD CADMIUM ION FORMUL 3 CD 2(CD 2+) FORMUL 5 HOH *214(H2 O) HELIX 1 1 ARG A 61 GLU A 69 1 9 HELIX 2 2 ARG B 61 LEU B 71 1 11 SHEET 1 A 7 GLU A 18 PHE A 21 0 SHEET 2 A 7 ALA A 27 SER A 35 -1 O ASN A 30 N GLU A 18 SHEET 3 A 7 LEU A 53 TRP A 60 -1 O ILE A 59 N ALA A 29 SHEET 4 A 7 THR A 97 PRO A 108 1 O VAL A 103 N ASN A 58 SHEET 5 A 7 ARG A 76 SER A 87 -1 N LYS A 84 O GLU A 100 SHEET 6 A 7 THR A 6 LEU A 13 -1 N ILE A 9 O VAL A 79 SHEET 7 A 7 ALA A 27 SER A 35 -1 O ALA A 34 N ASN A 12 SHEET 1 B 2 ALA A 113 LYS A 119 0 SHEET 2 B 2 ALA B 113 LYS B 119 -1 O ASN B 118 N THR A 114 SHEET 1 C 7 GLU B 18 PHE B 21 0 SHEET 2 C 7 ALA B 27 SER B 35 -1 O ASN B 30 N GLU B 18 SHEET 3 C 7 LEU B 53 TRP B 60 -1 O CYS B 57 N PHE B 31 SHEET 4 C 7 ILE B 99 PRO B 108 1 O VAL B 103 N ASN B 58 SHEET 5 C 7 ARG B 76 GLN B 85 -1 N LYS B 84 O GLU B 100 SHEET 6 C 7 THR B 6 LEU B 13 -1 N GLY B 11 O VAL B 77 SHEET 7 C 7 ALA B 27 SER B 35 -1 O ALA B 34 N ASN B 12 LINK OE1 GLU A 100 CD CD B 401 6655 1555 1.91 LINK OE2 GLU A 100 CD CD B 401 6655 1555 2.82 LINK O HOH A 198 CD CD B 400 6655 1555 2.39 LINK OD1 ASP B 16 CD CD B 400 1555 1555 2.68 LINK OD2 ASP B 16 CD CD B 400 1555 1555 2.50 LINK OE1 GLU B 62 CD CD B 401 1555 1555 2.13 LINK OE2 GLU B 62 CD CD B 401 1555 1555 2.02 LINK OE1 GLU B 65 CD CD B 401 1555 1555 2.51 LINK OE2 GLU B 65 CD CD B 401 1555 1555 2.01 LINK CD CD B 401 O HOH B 402 1555 1555 2.87 SITE 1 AC1 2 HOH A 198 ASP B 16 SITE 1 AC2 4 GLU A 100 GLU B 62 GLU B 65 HOH B 402 CRYST1 79.484 79.484 78.404 90.00 90.00 120.00 P 31 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012581 0.007264 0.000000 0.00000 SCALE2 0.000000 0.014527 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012754 0.00000