data_1UI0 # _entry.id 1UI0 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.389 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1UI0 pdb_00001ui0 10.2210/pdb1ui0/pdb RCSB RCSB005850 ? ? WWPDB D_1000005850 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2003-10-14 2 'Structure model' 1 1 2008-04-27 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 2 0 2019-08-28 5 'Structure model' 2 1 2023-12-27 6 'Structure model' 2 2 2024-04-03 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Atomic model' 4 4 'Structure model' 'Data collection' 5 4 'Structure model' 'Derived calculations' 6 5 'Structure model' 'Data collection' 7 5 'Structure model' 'Database references' 8 5 'Structure model' 'Derived calculations' 9 6 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' atom_site 2 4 'Structure model' pdbx_struct_conn_angle 3 5 'Structure model' chem_comp_atom 4 5 'Structure model' chem_comp_bond 5 5 'Structure model' database_2 6 5 'Structure model' struct_site 7 6 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_atom_site.B_iso_or_equiv' 2 4 'Structure model' '_atom_site.Cartn_x' 3 4 'Structure model' '_atom_site.Cartn_y' 4 4 'Structure model' '_atom_site.Cartn_z' 5 4 'Structure model' '_pdbx_struct_conn_angle.value' 6 5 'Structure model' '_database_2.pdbx_DOI' 7 5 'Structure model' '_database_2.pdbx_database_accession' 8 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 9 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 10 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1UI0 _pdbx_database_status.recvd_initial_deposition_date 2003-07-14 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf REL _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1UI1 '1UI1 contains the selenomethionyl protein' unspecified TargetDB ttk003000721.2 . unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Hoseki, J.' 1 'Okamoto, A.' 2 'Masui, R.' 3 'Shibata, T.' 4 'Inoue, Y.' 5 'Yokoyama, S.' 6 'Kuramitsu, S.' 7 'RIKEN Structural Genomics/Proteomics Initiative (RSGI)' 8 # _citation.id primary _citation.title 'Crystal Structure of a Family 4 Uracil-DNA Glycosylase from Thermus thermophilus HB8' _citation.journal_abbrev J.Mol.Biol. _citation.journal_volume 333 _citation.page_first 515 _citation.page_last 526 _citation.year 2003 _citation.journal_id_ASTM JMOBAK _citation.country UK _citation.journal_id_ISSN 0022-2836 _citation.journal_id_CSD 0070 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 14556741 _citation.pdbx_database_id_DOI 10.1016/j.jmb.2003.08.030 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Hoseki, J.' 1 ? primary 'Okamoto, A.' 2 ? primary 'Masui, R.' 3 ? primary 'Shibata, T.' 4 ? primary 'Inoue, Y.' 5 ? primary 'Yokoyama, S.' 6 ? primary 'Kuramitsu, S.' 7 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Uracil-DNA Glycosylase' 22997.869 1 3.2.2.- ? ? ? 2 non-polymer syn 'SULFATE ION' 96.063 1 ? ? ? ? 3 non-polymer syn 'IRON/SULFUR CLUSTER' 351.640 1 ? ? ? ? 4 non-polymer syn URACIL 112.087 2 ? ? ? ? 5 water nat water 18.015 202 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MTLELLQAQAQNCTACRLMEGRTRVVFGEGNPDAKLMIVGEGPGEEEDKTGRPFVGKAGQLLNRILEAAGIPREEVYITN IVKCRPPQNRAPLPDEAKICTDKWLLKQIELIAPQIIVPLGAVAAEFFLGEKVSITKVRGKWYEWHGIKVFPMFHPAYLL RNPSRAPGSPKHLTWLDIQEVKRALDALPPKERRPVKAVSQEPLF ; _entity_poly.pdbx_seq_one_letter_code_can ;MTLELLQAQAQNCTACRLMEGRTRVVFGEGNPDAKLMIVGEGPGEEEDKTGRPFVGKAGQLLNRILEAAGIPREEVYITN IVKCRPPQNRAPLPDEAKICTDKWLLKQIELIAPQIIVPLGAVAAEFFLGEKVSITKVRGKWYEWHGIKVFPMFHPAYLL RNPSRAPGSPKHLTWLDIQEVKRALDALPPKERRPVKAVSQEPLF ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ttk003000721.2 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'SULFATE ION' SO4 3 'IRON/SULFUR CLUSTER' SF4 4 URACIL URA 5 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 THR n 1 3 LEU n 1 4 GLU n 1 5 LEU n 1 6 LEU n 1 7 GLN n 1 8 ALA n 1 9 GLN n 1 10 ALA n 1 11 GLN n 1 12 ASN n 1 13 CYS n 1 14 THR n 1 15 ALA n 1 16 CYS n 1 17 ARG n 1 18 LEU n 1 19 MET n 1 20 GLU n 1 21 GLY n 1 22 ARG n 1 23 THR n 1 24 ARG n 1 25 VAL n 1 26 VAL n 1 27 PHE n 1 28 GLY n 1 29 GLU n 1 30 GLY n 1 31 ASN n 1 32 PRO n 1 33 ASP n 1 34 ALA n 1 35 LYS n 1 36 LEU n 1 37 MET n 1 38 ILE n 1 39 VAL n 1 40 GLY n 1 41 GLU n 1 42 GLY n 1 43 PRO n 1 44 GLY n 1 45 GLU n 1 46 GLU n 1 47 GLU n 1 48 ASP n 1 49 LYS n 1 50 THR n 1 51 GLY n 1 52 ARG n 1 53 PRO n 1 54 PHE n 1 55 VAL n 1 56 GLY n 1 57 LYS n 1 58 ALA n 1 59 GLY n 1 60 GLN n 1 61 LEU n 1 62 LEU n 1 63 ASN n 1 64 ARG n 1 65 ILE n 1 66 LEU n 1 67 GLU n 1 68 ALA n 1 69 ALA n 1 70 GLY n 1 71 ILE n 1 72 PRO n 1 73 ARG n 1 74 GLU n 1 75 GLU n 1 76 VAL n 1 77 TYR n 1 78 ILE n 1 79 THR n 1 80 ASN n 1 81 ILE n 1 82 VAL n 1 83 LYS n 1 84 CYS n 1 85 ARG n 1 86 PRO n 1 87 PRO n 1 88 GLN n 1 89 ASN n 1 90 ARG n 1 91 ALA n 1 92 PRO n 1 93 LEU n 1 94 PRO n 1 95 ASP n 1 96 GLU n 1 97 ALA n 1 98 LYS n 1 99 ILE n 1 100 CYS n 1 101 THR n 1 102 ASP n 1 103 LYS n 1 104 TRP n 1 105 LEU n 1 106 LEU n 1 107 LYS n 1 108 GLN n 1 109 ILE n 1 110 GLU n 1 111 LEU n 1 112 ILE n 1 113 ALA n 1 114 PRO n 1 115 GLN n 1 116 ILE n 1 117 ILE n 1 118 VAL n 1 119 PRO n 1 120 LEU n 1 121 GLY n 1 122 ALA n 1 123 VAL n 1 124 ALA n 1 125 ALA n 1 126 GLU n 1 127 PHE n 1 128 PHE n 1 129 LEU n 1 130 GLY n 1 131 GLU n 1 132 LYS n 1 133 VAL n 1 134 SER n 1 135 ILE n 1 136 THR n 1 137 LYS n 1 138 VAL n 1 139 ARG n 1 140 GLY n 1 141 LYS n 1 142 TRP n 1 143 TYR n 1 144 GLU n 1 145 TRP n 1 146 HIS n 1 147 GLY n 1 148 ILE n 1 149 LYS n 1 150 VAL n 1 151 PHE n 1 152 PRO n 1 153 MET n 1 154 PHE n 1 155 HIS n 1 156 PRO n 1 157 ALA n 1 158 TYR n 1 159 LEU n 1 160 LEU n 1 161 ARG n 1 162 ASN n 1 163 PRO n 1 164 SER n 1 165 ARG n 1 166 ALA n 1 167 PRO n 1 168 GLY n 1 169 SER n 1 170 PRO n 1 171 LYS n 1 172 HIS n 1 173 LEU n 1 174 THR n 1 175 TRP n 1 176 LEU n 1 177 ASP n 1 178 ILE n 1 179 GLN n 1 180 GLU n 1 181 VAL n 1 182 LYS n 1 183 ARG n 1 184 ALA n 1 185 LEU n 1 186 ASP n 1 187 ALA n 1 188 LEU n 1 189 PRO n 1 190 PRO n 1 191 LYS n 1 192 GLU n 1 193 ARG n 1 194 ARG n 1 195 PRO n 1 196 VAL n 1 197 LYS n 1 198 ALA n 1 199 VAL n 1 200 SER n 1 201 GLN n 1 202 GLU n 1 203 PRO n 1 204 LEU n 1 205 PHE n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Thermus _entity_src_gen.pdbx_gene_src_gene tthung _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Thermus thermophilus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 274 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species 'Escherichia coli' _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET11a _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SF4 non-polymer . 'IRON/SULFUR CLUSTER' ? 'Fe4 S4' 351.640 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 URA non-polymer . URACIL ? 'C4 H4 N2 O2' 112.087 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 ? ? ? A . n A 1 2 THR 2 2 2 THR THR A . n A 1 3 LEU 3 3 3 LEU LEU A . n A 1 4 GLU 4 4 4 GLU GLU A . n A 1 5 LEU 5 5 5 LEU LEU A . n A 1 6 LEU 6 6 6 LEU LEU A . n A 1 7 GLN 7 7 7 GLN GLN A . n A 1 8 ALA 8 8 8 ALA ALA A . n A 1 9 GLN 9 9 9 GLN GLN A . n A 1 10 ALA 10 10 10 ALA ALA A . n A 1 11 GLN 11 11 11 GLN GLN A . n A 1 12 ASN 12 12 12 ASN ASN A . n A 1 13 CYS 13 13 13 CYS CYS A . n A 1 14 THR 14 14 14 THR THR A . n A 1 15 ALA 15 15 15 ALA ALA A . n A 1 16 CYS 16 16 16 CYS CYS A . n A 1 17 ARG 17 17 17 ARG ARG A . n A 1 18 LEU 18 18 18 LEU LEU A . n A 1 19 MET 19 19 19 MET MET A . n A 1 20 GLU 20 20 20 GLU GLU A . n A 1 21 GLY 21 21 21 GLY GLY A . n A 1 22 ARG 22 22 22 ARG ARG A . n A 1 23 THR 23 23 23 THR THR A . n A 1 24 ARG 24 24 24 ARG ARG A . n A 1 25 VAL 25 25 25 VAL VAL A . n A 1 26 VAL 26 26 26 VAL VAL A . n A 1 27 PHE 27 27 27 PHE PHE A . n A 1 28 GLY 28 28 28 GLY GLY A . n A 1 29 GLU 29 29 29 GLU GLU A . n A 1 30 GLY 30 30 30 GLY GLY A . n A 1 31 ASN 31 31 31 ASN ASN A . n A 1 32 PRO 32 32 32 PRO PRO A . n A 1 33 ASP 33 33 33 ASP ASP A . n A 1 34 ALA 34 34 34 ALA ALA A . n A 1 35 LYS 35 35 35 LYS LYS A . n A 1 36 LEU 36 36 36 LEU LEU A . n A 1 37 MET 37 37 37 MET MET A . n A 1 38 ILE 38 38 38 ILE ILE A . n A 1 39 VAL 39 39 39 VAL VAL A . n A 1 40 GLY 40 40 40 GLY GLY A . n A 1 41 GLU 41 41 41 GLU GLU A . n A 1 42 GLY 42 42 42 GLY GLY A . n A 1 43 PRO 43 43 43 PRO PRO A . n A 1 44 GLY 44 44 44 GLY GLY A . n A 1 45 GLU 45 45 45 GLU GLU A . n A 1 46 GLU 46 46 46 GLU GLU A . n A 1 47 GLU 47 47 47 GLU GLU A . n A 1 48 ASP 48 48 48 ASP ASP A . n A 1 49 LYS 49 49 49 LYS LYS A . n A 1 50 THR 50 50 50 THR THR A . n A 1 51 GLY 51 51 51 GLY GLY A . n A 1 52 ARG 52 52 52 ARG ARG A . n A 1 53 PRO 53 53 53 PRO PRO A . n A 1 54 PHE 54 54 54 PHE PHE A . n A 1 55 VAL 55 55 55 VAL VAL A . n A 1 56 GLY 56 56 56 GLY GLY A . n A 1 57 LYS 57 57 57 LYS LYS A . n A 1 58 ALA 58 58 58 ALA ALA A . n A 1 59 GLY 59 59 59 GLY GLY A . n A 1 60 GLN 60 60 60 GLN GLN A . n A 1 61 LEU 61 61 61 LEU LEU A . n A 1 62 LEU 62 62 62 LEU LEU A . n A 1 63 ASN 63 63 63 ASN ASN A . n A 1 64 ARG 64 64 64 ARG ARG A . n A 1 65 ILE 65 65 65 ILE ILE A . n A 1 66 LEU 66 66 66 LEU LEU A . n A 1 67 GLU 67 67 67 GLU GLU A . n A 1 68 ALA 68 68 68 ALA ALA A . n A 1 69 ALA 69 69 69 ALA ALA A . n A 1 70 GLY 70 70 70 GLY GLY A . n A 1 71 ILE 71 71 71 ILE ILE A . n A 1 72 PRO 72 72 72 PRO PRO A . n A 1 73 ARG 73 73 73 ARG ARG A . n A 1 74 GLU 74 74 74 GLU GLU A . n A 1 75 GLU 75 75 75 GLU GLU A . n A 1 76 VAL 76 76 76 VAL VAL A . n A 1 77 TYR 77 77 77 TYR TYR A . n A 1 78 ILE 78 78 78 ILE ILE A . n A 1 79 THR 79 79 79 THR THR A . n A 1 80 ASN 80 80 80 ASN ASN A . n A 1 81 ILE 81 81 81 ILE ILE A . n A 1 82 VAL 82 82 82 VAL VAL A . n A 1 83 LYS 83 83 83 LYS LYS A . n A 1 84 CYS 84 84 84 CYS CYS A . n A 1 85 ARG 85 85 85 ARG ARG A . n A 1 86 PRO 86 86 86 PRO PRO A . n A 1 87 PRO 87 87 87 PRO PRO A . n A 1 88 GLN 88 88 88 GLN GLN A . n A 1 89 ASN 89 89 89 ASN ASN A . n A 1 90 ARG 90 90 90 ARG ARG A . n A 1 91 ALA 91 91 91 ALA ALA A . n A 1 92 PRO 92 92 92 PRO PRO A . n A 1 93 LEU 93 93 93 LEU LEU A . n A 1 94 PRO 94 94 94 PRO PRO A . n A 1 95 ASP 95 95 95 ASP ASP A . n A 1 96 GLU 96 96 96 GLU GLU A . n A 1 97 ALA 97 97 97 ALA ALA A . n A 1 98 LYS 98 98 98 LYS LYS A . n A 1 99 ILE 99 99 99 ILE ILE A . n A 1 100 CYS 100 100 100 CYS CYS A . n A 1 101 THR 101 101 101 THR THR A . n A 1 102 ASP 102 102 102 ASP ASP A . n A 1 103 LYS 103 103 103 LYS LYS A . n A 1 104 TRP 104 104 104 TRP TRP A . n A 1 105 LEU 105 105 105 LEU LEU A . n A 1 106 LEU 106 106 106 LEU LEU A . n A 1 107 LYS 107 107 107 LYS LYS A . n A 1 108 GLN 108 108 108 GLN GLN A . n A 1 109 ILE 109 109 109 ILE ILE A . n A 1 110 GLU 110 110 110 GLU GLU A . n A 1 111 LEU 111 111 111 LEU LEU A . n A 1 112 ILE 112 112 112 ILE ILE A . n A 1 113 ALA 113 113 113 ALA ALA A . n A 1 114 PRO 114 114 114 PRO PRO A . n A 1 115 GLN 115 115 115 GLN GLN A . n A 1 116 ILE 116 116 116 ILE ILE A . n A 1 117 ILE 117 117 117 ILE ILE A . n A 1 118 VAL 118 118 118 VAL VAL A . n A 1 119 PRO 119 119 119 PRO PRO A . n A 1 120 LEU 120 120 120 LEU LEU A . n A 1 121 GLY 121 121 121 GLY GLY A . n A 1 122 ALA 122 122 122 ALA ALA A . n A 1 123 VAL 123 123 123 VAL VAL A . n A 1 124 ALA 124 124 124 ALA ALA A . n A 1 125 ALA 125 125 125 ALA ALA A . n A 1 126 GLU 126 126 126 GLU GLU A . n A 1 127 PHE 127 127 127 PHE PHE A . n A 1 128 PHE 128 128 128 PHE PHE A . n A 1 129 LEU 129 129 129 LEU LEU A . n A 1 130 GLY 130 130 130 GLY GLY A . n A 1 131 GLU 131 131 131 GLU GLU A . n A 1 132 LYS 132 132 132 LYS LYS A . n A 1 133 VAL 133 133 133 VAL VAL A . n A 1 134 SER 134 134 134 SER SER A . n A 1 135 ILE 135 135 135 ILE ILE A . n A 1 136 THR 136 136 136 THR THR A . n A 1 137 LYS 137 137 137 LYS LYS A . n A 1 138 VAL 138 138 138 VAL VAL A . n A 1 139 ARG 139 139 139 ARG ARG A . n A 1 140 GLY 140 140 140 GLY GLY A . n A 1 141 LYS 141 141 141 LYS LYS A . n A 1 142 TRP 142 142 142 TRP TRP A . n A 1 143 TYR 143 143 143 TYR TYR A . n A 1 144 GLU 144 144 144 GLU GLU A . n A 1 145 TRP 145 145 145 TRP TRP A . n A 1 146 HIS 146 146 146 HIS HIS A . n A 1 147 GLY 147 147 147 GLY GLY A . n A 1 148 ILE 148 148 148 ILE ILE A . n A 1 149 LYS 149 149 149 LYS LYS A . n A 1 150 VAL 150 150 150 VAL VAL A . n A 1 151 PHE 151 151 151 PHE PHE A . n A 1 152 PRO 152 152 152 PRO PRO A . n A 1 153 MET 153 153 153 MET MET A . n A 1 154 PHE 154 154 154 PHE PHE A . n A 1 155 HIS 155 155 155 HIS HIS A . n A 1 156 PRO 156 156 156 PRO PRO A . n A 1 157 ALA 157 157 157 ALA ALA A . n A 1 158 TYR 158 158 158 TYR TYR A . n A 1 159 LEU 159 159 159 LEU LEU A . n A 1 160 LEU 160 160 160 LEU LEU A . n A 1 161 ARG 161 161 161 ARG ARG A . n A 1 162 ASN 162 162 162 ASN ASN A . n A 1 163 PRO 163 163 163 PRO PRO A . n A 1 164 SER 164 164 164 SER SER A . n A 1 165 ARG 165 165 165 ARG ARG A . n A 1 166 ALA 166 166 166 ALA ALA A . n A 1 167 PRO 167 167 167 PRO PRO A . n A 1 168 GLY 168 168 168 GLY GLY A . n A 1 169 SER 169 169 169 SER SER A . n A 1 170 PRO 170 170 170 PRO PRO A . n A 1 171 LYS 171 171 171 LYS LYS A . n A 1 172 HIS 172 172 172 HIS HIS A . n A 1 173 LEU 173 173 173 LEU LEU A . n A 1 174 THR 174 174 174 THR THR A . n A 1 175 TRP 175 175 175 TRP TRP A . n A 1 176 LEU 176 176 176 LEU LEU A . n A 1 177 ASP 177 177 177 ASP ASP A . n A 1 178 ILE 178 178 178 ILE ILE A . n A 1 179 GLN 179 179 179 GLN GLN A . n A 1 180 GLU 180 180 180 GLU GLU A . n A 1 181 VAL 181 181 181 VAL VAL A . n A 1 182 LYS 182 182 182 LYS LYS A . n A 1 183 ARG 183 183 183 ARG ARG A . n A 1 184 ALA 184 184 184 ALA ALA A . n A 1 185 LEU 185 185 185 LEU LEU A . n A 1 186 ASP 186 186 186 ASP ASP A . n A 1 187 ALA 187 187 187 ALA ALA A . n A 1 188 LEU 188 188 188 LEU LEU A . n A 1 189 PRO 189 189 189 PRO PRO A . n A 1 190 PRO 190 190 190 PRO PRO A . n A 1 191 LYS 191 191 191 LYS LYS A . n A 1 192 GLU 192 192 192 GLU GLU A . n A 1 193 ARG 193 193 193 ARG ARG A . n A 1 194 ARG 194 194 ? ? ? A . n A 1 195 PRO 195 195 ? ? ? A . n A 1 196 VAL 196 196 ? ? ? A . n A 1 197 LYS 197 197 ? ? ? A . n A 1 198 ALA 198 198 ? ? ? A . n A 1 199 VAL 199 199 ? ? ? A . n A 1 200 SER 200 200 ? ? ? A . n A 1 201 GLN 201 201 ? ? ? A . n A 1 202 GLU 202 202 ? ? ? A . n A 1 203 PRO 203 203 ? ? ? A . n A 1 204 LEU 204 204 ? ? ? A . n A 1 205 PHE 205 205 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 1 213 213 SO4 SO4 A . C 3 SF4 1 210 210 SF4 FS4 A . D 4 URA 1 211 211 URA URA A . E 4 URA 1 212 212 URA URA A . F 5 HOH 1 214 1 HOH HOH A . F 5 HOH 2 215 2 HOH HOH A . F 5 HOH 3 216 3 HOH HOH A . F 5 HOH 4 217 4 HOH HOH A . F 5 HOH 5 218 5 HOH HOH A . F 5 HOH 6 219 6 HOH HOH A . F 5 HOH 7 220 7 HOH HOH A . F 5 HOH 8 221 8 HOH HOH A . F 5 HOH 9 222 9 HOH HOH A . F 5 HOH 10 223 10 HOH HOH A . F 5 HOH 11 224 11 HOH HOH A . F 5 HOH 12 225 12 HOH HOH A . F 5 HOH 13 226 13 HOH HOH A . F 5 HOH 14 227 14 HOH HOH A . F 5 HOH 15 228 15 HOH HOH A . F 5 HOH 16 229 16 HOH HOH A . F 5 HOH 17 230 17 HOH HOH A . F 5 HOH 18 231 18 HOH HOH A . F 5 HOH 19 232 19 HOH HOH A . F 5 HOH 20 233 20 HOH HOH A . F 5 HOH 21 234 21 HOH HOH A . F 5 HOH 22 235 22 HOH HOH A . F 5 HOH 23 236 23 HOH HOH A . F 5 HOH 24 237 24 HOH HOH A . F 5 HOH 25 238 25 HOH HOH A . F 5 HOH 26 239 26 HOH HOH A . F 5 HOH 27 240 27 HOH HOH A . F 5 HOH 28 241 28 HOH HOH A . F 5 HOH 29 242 29 HOH HOH A . F 5 HOH 30 243 30 HOH HOH A . F 5 HOH 31 244 31 HOH HOH A . F 5 HOH 32 245 32 HOH HOH A . F 5 HOH 33 246 33 HOH HOH A . F 5 HOH 34 247 34 HOH HOH A . F 5 HOH 35 248 35 HOH HOH A . F 5 HOH 36 249 36 HOH HOH A . F 5 HOH 37 250 37 HOH HOH A . F 5 HOH 38 251 38 HOH HOH A . F 5 HOH 39 252 39 HOH HOH A . F 5 HOH 40 253 40 HOH HOH A . F 5 HOH 41 254 41 HOH HOH A . F 5 HOH 42 255 42 HOH HOH A . F 5 HOH 43 256 43 HOH HOH A . F 5 HOH 44 257 44 HOH HOH A . F 5 HOH 45 258 45 HOH HOH A . F 5 HOH 46 259 46 HOH HOH A . F 5 HOH 47 260 47 HOH HOH A . F 5 HOH 48 261 48 HOH HOH A . F 5 HOH 49 262 49 HOH HOH A . F 5 HOH 50 263 50 HOH HOH A . F 5 HOH 51 264 51 HOH HOH A . F 5 HOH 52 265 52 HOH HOH A . F 5 HOH 53 266 53 HOH HOH A . F 5 HOH 54 267 54 HOH HOH A . F 5 HOH 55 268 55 HOH HOH A . F 5 HOH 56 269 56 HOH HOH A . F 5 HOH 57 270 57 HOH HOH A . F 5 HOH 58 271 58 HOH HOH A . F 5 HOH 59 272 59 HOH HOH A . F 5 HOH 60 273 60 HOH HOH A . F 5 HOH 61 274 61 HOH HOH A . F 5 HOH 62 275 62 HOH HOH A . F 5 HOH 63 276 63 HOH HOH A . F 5 HOH 64 277 64 HOH HOH A . F 5 HOH 65 278 65 HOH HOH A . F 5 HOH 66 279 66 HOH HOH A . F 5 HOH 67 280 67 HOH HOH A . F 5 HOH 68 281 68 HOH HOH A . F 5 HOH 69 282 69 HOH HOH A . F 5 HOH 70 283 70 HOH HOH A . F 5 HOH 71 284 71 HOH HOH A . F 5 HOH 72 285 72 HOH HOH A . F 5 HOH 73 286 73 HOH HOH A . F 5 HOH 74 287 74 HOH HOH A . F 5 HOH 75 288 75 HOH HOH A . F 5 HOH 76 289 76 HOH HOH A . F 5 HOH 77 290 77 HOH HOH A . F 5 HOH 78 291 78 HOH HOH A . F 5 HOH 79 292 79 HOH HOH A . F 5 HOH 80 293 80 HOH HOH A . F 5 HOH 81 294 81 HOH HOH A . F 5 HOH 82 295 82 HOH HOH A . F 5 HOH 83 296 83 HOH HOH A . F 5 HOH 84 297 84 HOH HOH A . F 5 HOH 85 298 85 HOH HOH A . F 5 HOH 86 299 86 HOH HOH A . F 5 HOH 87 300 87 HOH HOH A . F 5 HOH 88 301 88 HOH HOH A . F 5 HOH 89 302 89 HOH HOH A . F 5 HOH 90 303 90 HOH HOH A . F 5 HOH 91 304 91 HOH HOH A . F 5 HOH 92 305 92 HOH HOH A . F 5 HOH 93 306 93 HOH HOH A . F 5 HOH 94 307 94 HOH HOH A . F 5 HOH 95 308 95 HOH HOH A . F 5 HOH 96 309 96 HOH HOH A . F 5 HOH 97 310 97 HOH HOH A . F 5 HOH 98 311 98 HOH HOH A . F 5 HOH 99 312 99 HOH HOH A . F 5 HOH 100 313 100 HOH HOH A . F 5 HOH 101 314 101 HOH HOH A . F 5 HOH 102 315 102 HOH HOH A . F 5 HOH 103 316 103 HOH HOH A . F 5 HOH 104 317 104 HOH HOH A . F 5 HOH 105 318 105 HOH HOH A . F 5 HOH 106 319 106 HOH HOH A . F 5 HOH 107 320 107 HOH HOH A . F 5 HOH 108 321 108 HOH HOH A . F 5 HOH 109 322 109 HOH HOH A . F 5 HOH 110 323 110 HOH HOH A . F 5 HOH 111 324 111 HOH HOH A . F 5 HOH 112 325 112 HOH HOH A . F 5 HOH 113 326 113 HOH HOH A . F 5 HOH 114 327 114 HOH HOH A . F 5 HOH 115 328 115 HOH HOH A . F 5 HOH 116 329 116 HOH HOH A . F 5 HOH 117 330 117 HOH HOH A . F 5 HOH 118 331 118 HOH HOH A . F 5 HOH 119 332 119 HOH HOH A . F 5 HOH 120 333 120 HOH HOH A . F 5 HOH 121 334 121 HOH HOH A . F 5 HOH 122 335 122 HOH HOH A . F 5 HOH 123 336 123 HOH HOH A . F 5 HOH 124 337 124 HOH HOH A . F 5 HOH 125 338 125 HOH HOH A . F 5 HOH 126 339 126 HOH HOH A . F 5 HOH 127 340 127 HOH HOH A . F 5 HOH 128 341 128 HOH HOH A . F 5 HOH 129 342 129 HOH HOH A . F 5 HOH 130 343 130 HOH HOH A . F 5 HOH 131 344 131 HOH HOH A . F 5 HOH 132 345 132 HOH HOH A . F 5 HOH 133 346 133 HOH HOH A . F 5 HOH 134 347 134 HOH HOH A . F 5 HOH 135 348 135 HOH HOH A . F 5 HOH 136 349 136 HOH HOH A . F 5 HOH 137 350 137 HOH HOH A . F 5 HOH 138 351 138 HOH HOH A . F 5 HOH 139 352 139 HOH HOH A . F 5 HOH 140 353 140 HOH HOH A . F 5 HOH 141 354 141 HOH HOH A . F 5 HOH 142 355 142 HOH HOH A . F 5 HOH 143 356 143 HOH HOH A . F 5 HOH 144 357 144 HOH HOH A . F 5 HOH 145 358 145 HOH HOH A . F 5 HOH 146 359 146 HOH HOH A . F 5 HOH 147 360 147 HOH HOH A . F 5 HOH 148 361 148 HOH HOH A . F 5 HOH 149 362 149 HOH HOH A . F 5 HOH 150 363 150 HOH HOH A . F 5 HOH 151 364 151 HOH HOH A . F 5 HOH 152 365 152 HOH HOH A . F 5 HOH 153 366 153 HOH HOH A . F 5 HOH 154 367 154 HOH HOH A . F 5 HOH 155 368 155 HOH HOH A . F 5 HOH 156 369 156 HOH HOH A . F 5 HOH 157 370 157 HOH HOH A . F 5 HOH 158 371 158 HOH HOH A . F 5 HOH 159 372 159 HOH HOH A . F 5 HOH 160 373 160 HOH HOH A . F 5 HOH 161 374 161 HOH HOH A . F 5 HOH 162 375 162 HOH HOH A . F 5 HOH 163 376 163 HOH HOH A . F 5 HOH 164 377 164 HOH HOH A . F 5 HOH 165 378 165 HOH HOH A . F 5 HOH 166 379 166 HOH HOH A . F 5 HOH 167 380 167 HOH HOH A . F 5 HOH 168 381 168 HOH HOH A . F 5 HOH 169 382 169 HOH HOH A . F 5 HOH 170 383 170 HOH HOH A . F 5 HOH 171 384 171 HOH HOH A . F 5 HOH 172 385 172 HOH HOH A . F 5 HOH 173 386 173 HOH HOH A . F 5 HOH 174 387 174 HOH HOH A . F 5 HOH 175 388 175 HOH HOH A . F 5 HOH 176 389 176 HOH HOH A . F 5 HOH 177 390 177 HOH HOH A . F 5 HOH 178 391 178 HOH HOH A . F 5 HOH 179 392 179 HOH HOH A . F 5 HOH 180 393 180 HOH HOH A . F 5 HOH 181 394 181 HOH HOH A . F 5 HOH 182 395 182 HOH HOH A . F 5 HOH 183 396 183 HOH HOH A . F 5 HOH 184 397 184 HOH HOH A . F 5 HOH 185 398 185 HOH HOH A . F 5 HOH 186 399 186 HOH HOH A . F 5 HOH 187 400 187 HOH HOH A . F 5 HOH 188 401 188 HOH HOH A . F 5 HOH 189 402 189 HOH HOH A . F 5 HOH 190 403 190 HOH HOH A . F 5 HOH 191 404 191 HOH HOH A . F 5 HOH 192 405 192 HOH HOH A . F 5 HOH 193 406 193 HOH HOH A . F 5 HOH 194 407 194 HOH HOH A . F 5 HOH 195 408 195 HOH HOH A . F 5 HOH 196 409 196 HOH HOH A . F 5 HOH 197 410 197 HOH HOH A . F 5 HOH 198 411 198 HOH HOH A . F 5 HOH 199 412 199 HOH HOH A . F 5 HOH 200 413 200 HOH HOH A . F 5 HOH 201 414 201 HOH HOH A . F 5 HOH 202 415 202 HOH HOH A . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CNS refinement 1.1 ? 1 HKL-2000 'data reduction' . ? 2 SCALEPACK 'data scaling' . ? 3 MOLREP phasing . ? 4 # _cell.entry_id 1UI0 _cell.length_a 45.429 _cell.length_b 59.512 _cell.length_c 80.971 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1UI0 _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 # _exptl.entry_id 1UI0 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.24 _exptl_crystal.density_percent_sol 44.73 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 277 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 8.5 _exptl_crystal_grow.pdbx_details '1.2-1.5M ammonium sulfate, 75mM Tris, 25% glycerol, pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 277K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'RIGAKU RAXIS V' _diffrn_detector.pdbx_collection_date 2002-05-23 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'transparent diamond double crystal' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.98 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SPRING-8 BEAMLINE BL45XU' _diffrn_source.pdbx_synchrotron_site SPring-8 _diffrn_source.pdbx_synchrotron_beamline BL45XU _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.98 # _reflns.entry_id 1UI0 _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 48.2 _reflns.d_resolution_high 1.5 _reflns.number_obs 35830 _reflns.number_all ? _reflns.percent_possible_obs 99.9 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate 10.1 _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.50 _reflns_shell.d_res_low 1.55 _reflns_shell.percent_possible_all 99.9 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 1UI0 _refine.ls_number_reflns_obs 35638 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F .0 _refine.pdbx_data_cutoff_high_absF 87702.03 _refine.pdbx_data_cutoff_low_absF .000000 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 10.00 _refine.ls_d_res_high 1.50 _refine.ls_percent_reflns_obs 99.6 _refine.ls_R_factor_obs 0.183 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.183 _refine.ls_R_factor_R_free 0.201 _refine.ls_R_factor_R_free_error .003 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 9.9 _refine.ls_number_reflns_R_free 3543 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 11.2 _refine.aniso_B[1][1] -2.73 _refine.aniso_B[2][2] .39 _refine.aniso_B[3][3] 2.34 _refine.aniso_B[1][2] .00 _refine.aniso_B[1][3] .00 _refine.aniso_B[2][3] .00 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol .481203 _refine.solvent_model_param_bsol 39.448 _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model 'Selenomethionyl uracil-DNA glycosylase from Thermus thermophilus HB8' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 1UI0 _refine_analyze.Luzzati_coordinate_error_obs .15 _refine_analyze.Luzzati_sigma_a_obs -.02 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free .17 _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1512 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 29 _refine_hist.number_atoms_solvent 202 _refine_hist.number_atoms_total 1743 _refine_hist.d_res_high 1.50 _refine_hist.d_res_low 10.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d .004 ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.2 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 21.7 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 1.18 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it .93 1.50 ? ? 'X-RAY DIFFRACTION' ? c_mcangle_it 1.41 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scbond_it 1.70 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scangle_it 2.51 2.50 ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 1.50 _refine_ls_shell.d_res_low 1.59 _refine_ls_shell.number_reflns_R_work 5158 _refine_ls_shell.R_factor_R_work 0.185 _refine_ls_shell.percent_reflns_obs 98.8 _refine_ls_shell.R_factor_R_free 0.209 _refine_ls_shell.R_factor_R_free_error .008 _refine_ls_shell.percent_reflns_R_free 10.8 _refine_ls_shell.number_reflns_R_free 623 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.R_factor_all ? # _database_PDB_matrix.entry_id 1UI0 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] .000000 _database_PDB_matrix.origx[1][3] .000000 _database_PDB_matrix.origx[2][1] .000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] .000000 _database_PDB_matrix.origx[3][1] .000000 _database_PDB_matrix.origx[3][2] .000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] .00000 _database_PDB_matrix.origx_vector[2] .00000 _database_PDB_matrix.origx_vector[3] .00000 # _struct.entry_id 1UI0 _struct.title 'Crystal Structure Of Uracil-DNA Glycosylase From Thermus Thermophilus HB8' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1UI0 _struct_keywords.pdbx_keywords HYDROLASE _struct_keywords.text ;Base Excision Repair, Uracil-DNA Glycosylase, Iron/Sulfer Cluster, Thermophile, RIKEN Structural Genomics/Proteomics Initiative, RSGI, Structural Genomics, HYDROLASE ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 4 ? F N N 5 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q7WYV4_THETH _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MTLELLQAQAQNCTACRLMEGRTRVVFGEGNPDAKLMIVGEGPGEEEDKTGRPFVGKAGQLLNRILEAAGIPREEVYITN IVKCRPPQNRAPLPDEAKICTDKWLLKQIELIAPQIIVPLGAVAAEFFLGEKVSITKVRGKWYEWHGIKVFPMFHPAYLL RNPSRAPGSPKHLTWLDIQEVKRALDALPPKERRPVKAVSQEPLF ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_accession Q7WYV4 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1UI0 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 205 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q7WYV4 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 205 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 205 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 LEU A 3 ? ALA A 10 ? LEU A 3 ALA A 10 1 ? 8 HELX_P HELX_P2 2 ARG A 17 ? MET A 19 ? ARG A 17 MET A 19 5 ? 3 HELX_P HELX_P3 3 GLU A 45 ? THR A 50 ? GLU A 45 THR A 50 1 ? 6 HELX_P HELX_P4 4 LYS A 57 ? ALA A 69 ? LYS A 57 ALA A 69 1 ? 13 HELX_P HELX_P5 5 ARG A 73 ? GLU A 75 ? ARG A 73 GLU A 75 5 ? 3 HELX_P HELX_P6 6 PRO A 87 ? ASN A 89 ? PRO A 87 ASN A 89 5 ? 3 HELX_P HELX_P7 7 PRO A 94 ? ILE A 112 ? PRO A 94 ILE A 112 1 'KINKED AT TRP A 104' 19 HELX_P HELX_P8 8 ALA A 122 ? LEU A 129 ? ALA A 122 LEU A 129 1 ? 8 HELX_P HELX_P9 9 ILE A 135 ? VAL A 138 ? ILE A 135 VAL A 138 1 ? 4 HELX_P HELX_P10 10 PRO A 156 ? ARG A 161 ? PRO A 156 ARG A 161 1 ? 6 HELX_P HELX_P11 11 PRO A 170 ? ALA A 187 ? PRO A 170 ALA A 187 1 ? 18 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A CYS 13 SG ? ? ? 1_555 C SF4 . FE1 ? ? A CYS 13 A SF4 210 1_555 ? ? ? ? ? ? ? 2.297 ? ? metalc2 metalc ? ? A CYS 16 SG ? ? ? 1_555 C SF4 . FE2 ? ? A CYS 16 A SF4 210 1_555 ? ? ? ? ? ? ? 2.274 ? ? metalc3 metalc ? ? A CYS 84 SG ? ? ? 1_555 C SF4 . FE4 ? ? A CYS 84 A SF4 210 1_555 ? ? ? ? ? ? ? 2.317 ? ? metalc4 metalc ? ? A CYS 100 SG ? ? ? 1_555 C SF4 . FE3 ? ? A CYS 100 A SF4 210 1_555 ? ? ? ? ? ? ? 2.337 ? ? # _struct_conn_type.id metalc _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 SG ? A CYS 13 ? A CYS 13 ? 1_555 FE1 ? C SF4 . ? A SF4 210 ? 1_555 S2 ? C SF4 . ? A SF4 210 ? 1_555 107.9 ? 2 SG ? A CYS 13 ? A CYS 13 ? 1_555 FE1 ? C SF4 . ? A SF4 210 ? 1_555 S3 ? C SF4 . ? A SF4 210 ? 1_555 121.1 ? 3 S2 ? C SF4 . ? A SF4 210 ? 1_555 FE1 ? C SF4 . ? A SF4 210 ? 1_555 S3 ? C SF4 . ? A SF4 210 ? 1_555 104.4 ? 4 SG ? A CYS 13 ? A CYS 13 ? 1_555 FE1 ? C SF4 . ? A SF4 210 ? 1_555 S4 ? C SF4 . ? A SF4 210 ? 1_555 114.0 ? 5 S2 ? C SF4 . ? A SF4 210 ? 1_555 FE1 ? C SF4 . ? A SF4 210 ? 1_555 S4 ? C SF4 . ? A SF4 210 ? 1_555 104.5 ? 6 S3 ? C SF4 . ? A SF4 210 ? 1_555 FE1 ? C SF4 . ? A SF4 210 ? 1_555 S4 ? C SF4 . ? A SF4 210 ? 1_555 103.4 ? 7 SG ? A CYS 16 ? A CYS 16 ? 1_555 FE2 ? C SF4 . ? A SF4 210 ? 1_555 S1 ? C SF4 . ? A SF4 210 ? 1_555 105.2 ? 8 SG ? A CYS 16 ? A CYS 16 ? 1_555 FE2 ? C SF4 . ? A SF4 210 ? 1_555 S3 ? C SF4 . ? A SF4 210 ? 1_555 118.6 ? 9 S1 ? C SF4 . ? A SF4 210 ? 1_555 FE2 ? C SF4 . ? A SF4 210 ? 1_555 S3 ? C SF4 . ? A SF4 210 ? 1_555 104.9 ? 10 SG ? A CYS 16 ? A CYS 16 ? 1_555 FE2 ? C SF4 . ? A SF4 210 ? 1_555 S4 ? C SF4 . ? A SF4 210 ? 1_555 119.1 ? 11 S1 ? C SF4 . ? A SF4 210 ? 1_555 FE2 ? C SF4 . ? A SF4 210 ? 1_555 S4 ? C SF4 . ? A SF4 210 ? 1_555 104.1 ? 12 S3 ? C SF4 . ? A SF4 210 ? 1_555 FE2 ? C SF4 . ? A SF4 210 ? 1_555 S4 ? C SF4 . ? A SF4 210 ? 1_555 103.3 ? 13 SG ? A CYS 84 ? A CYS 84 ? 1_555 FE4 ? C SF4 . ? A SF4 210 ? 1_555 S1 ? C SF4 . ? A SF4 210 ? 1_555 110.8 ? 14 SG ? A CYS 84 ? A CYS 84 ? 1_555 FE4 ? C SF4 . ? A SF4 210 ? 1_555 S2 ? C SF4 . ? A SF4 210 ? 1_555 112.6 ? 15 S1 ? C SF4 . ? A SF4 210 ? 1_555 FE4 ? C SF4 . ? A SF4 210 ? 1_555 S2 ? C SF4 . ? A SF4 210 ? 1_555 104.5 ? 16 SG ? A CYS 84 ? A CYS 84 ? 1_555 FE4 ? C SF4 . ? A SF4 210 ? 1_555 S3 ? C SF4 . ? A SF4 210 ? 1_555 118.2 ? 17 S1 ? C SF4 . ? A SF4 210 ? 1_555 FE4 ? C SF4 . ? A SF4 210 ? 1_555 S3 ? C SF4 . ? A SF4 210 ? 1_555 105.4 ? 18 S2 ? C SF4 . ? A SF4 210 ? 1_555 FE4 ? C SF4 . ? A SF4 210 ? 1_555 S3 ? C SF4 . ? A SF4 210 ? 1_555 104.2 ? 19 SG ? A CYS 100 ? A CYS 100 ? 1_555 FE3 ? C SF4 . ? A SF4 210 ? 1_555 S1 ? C SF4 . ? A SF4 210 ? 1_555 111.0 ? 20 SG ? A CYS 100 ? A CYS 100 ? 1_555 FE3 ? C SF4 . ? A SF4 210 ? 1_555 S2 ? C SF4 . ? A SF4 210 ? 1_555 118.4 ? 21 S1 ? C SF4 . ? A SF4 210 ? 1_555 FE3 ? C SF4 . ? A SF4 210 ? 1_555 S2 ? C SF4 . ? A SF4 210 ? 1_555 104.3 ? 22 SG ? A CYS 100 ? A CYS 100 ? 1_555 FE3 ? C SF4 . ? A SF4 210 ? 1_555 S4 ? C SF4 . ? A SF4 210 ? 1_555 112.4 ? 23 S1 ? C SF4 . ? A SF4 210 ? 1_555 FE3 ? C SF4 . ? A SF4 210 ? 1_555 S4 ? C SF4 . ? A SF4 210 ? 1_555 104.9 ? 24 S2 ? C SF4 . ? A SF4 210 ? 1_555 FE3 ? C SF4 . ? A SF4 210 ? 1_555 S4 ? C SF4 . ? A SF4 210 ? 1_555 104.7 ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 6 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? parallel A 3 4 ? parallel A 4 5 ? parallel A 5 6 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 GLU A 29 ? GLY A 30 ? GLU A 29 GLY A 30 A 2 TYR A 77 ? ASN A 80 ? TYR A 77 ASN A 80 A 3 LEU A 36 ? GLY A 40 ? LEU A 36 GLY A 40 A 4 ILE A 116 ? PRO A 119 ? ILE A 116 PRO A 119 A 5 ILE A 148 ? VAL A 150 ? ILE A 148 VAL A 150 A 6 TYR A 143 ? TRP A 145 ? TYR A 143 TRP A 145 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N GLU A 29 ? N GLU A 29 O ILE A 78 ? O ILE A 78 A 2 3 O TYR A 77 ? O TYR A 77 N ILE A 38 ? N ILE A 38 A 3 4 N MET A 37 ? N MET A 37 O VAL A 118 ? O VAL A 118 A 4 5 N ILE A 117 ? N ILE A 117 O LYS A 149 ? O LYS A 149 A 5 6 O VAL A 150 ? O VAL A 150 N TYR A 143 ? N TYR A 143 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A SO4 213 ? 7 'BINDING SITE FOR RESIDUE SO4 A 213' AC2 Software A SF4 210 ? 6 'BINDING SITE FOR RESIDUE SF4 A 210' AC3 Software A URA 211 ? 9 'BINDING SITE FOR RESIDUE URA A 211' AC4 Software A URA 212 ? 4 'BINDING SITE FOR RESIDUE URA A 212' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 7 LYS A 57 ? LYS A 57 . ? 1_555 ? 2 AC1 7 ALA A 58 ? ALA A 58 . ? 1_555 ? 3 AC1 7 HOH F . ? HOH A 218 . ? 1_555 ? 4 AC1 7 HOH F . ? HOH A 257 . ? 1_555 ? 5 AC1 7 HOH F . ? HOH A 272 . ? 1_555 ? 6 AC1 7 HOH F . ? HOH A 274 . ? 1_555 ? 7 AC1 7 HOH F . ? HOH A 275 . ? 1_555 ? 8 AC2 6 CYS A 13 ? CYS A 13 . ? 1_555 ? 9 AC2 6 CYS A 16 ? CYS A 16 . ? 1_555 ? 10 AC2 6 ARG A 22 ? ARG A 22 . ? 1_555 ? 11 AC2 6 CYS A 84 ? CYS A 84 . ? 1_555 ? 12 AC2 6 CYS A 100 ? CYS A 100 . ? 1_555 ? 13 AC2 6 TRP A 104 ? TRP A 104 . ? 1_555 ? 14 AC3 9 GLU A 41 ? GLU A 41 . ? 1_555 ? 15 AC3 9 GLY A 42 ? GLY A 42 . ? 1_555 ? 16 AC3 9 GLU A 47 ? GLU A 47 . ? 1_555 ? 17 AC3 9 PRO A 53 ? PRO A 53 . ? 1_555 ? 18 AC3 9 PHE A 54 ? PHE A 54 . ? 1_555 ? 19 AC3 9 ASN A 80 ? ASN A 80 . ? 1_555 ? 20 AC3 9 HIS A 155 ? HIS A 155 . ? 1_555 ? 21 AC3 9 HOH F . ? HOH A 218 . ? 1_555 ? 22 AC3 9 HOH F . ? HOH A 243 . ? 1_555 ? 23 AC4 4 ARG A 64 ? ARG A 64 . ? 1_555 ? 24 AC4 4 LEU A 159 ? LEU A 159 . ? 1_555 ? 25 AC4 4 LYS A 171 ? LYS A 171 . ? 1_555 ? 26 AC4 4 HOH F . ? HOH A 401 . ? 1_555 ? # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name ? _pdbx_SG_project.full_name_of_center 'RIKEN Structural Genomics/Proteomics Initiative' _pdbx_SG_project.initial_of_center RSGI # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 1 ? A MET 1 2 1 Y 1 A ARG 194 ? A ARG 194 3 1 Y 1 A PRO 195 ? A PRO 195 4 1 Y 1 A VAL 196 ? A VAL 196 5 1 Y 1 A LYS 197 ? A LYS 197 6 1 Y 1 A ALA 198 ? A ALA 198 7 1 Y 1 A VAL 199 ? A VAL 199 8 1 Y 1 A SER 200 ? A SER 200 9 1 Y 1 A GLN 201 ? A GLN 201 10 1 Y 1 A GLU 202 ? A GLU 202 11 1 Y 1 A PRO 203 ? A PRO 203 12 1 Y 1 A LEU 204 ? A LEU 204 13 1 Y 1 A PHE 205 ? A PHE 205 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 HIS N N N N 137 HIS CA C N S 138 HIS C C N N 139 HIS O O N N 140 HIS CB C N N 141 HIS CG C Y N 142 HIS ND1 N Y N 143 HIS CD2 C Y N 144 HIS CE1 C Y N 145 HIS NE2 N Y N 146 HIS OXT O N N 147 HIS H H N N 148 HIS H2 H N N 149 HIS HA H N N 150 HIS HB2 H N N 151 HIS HB3 H N N 152 HIS HD1 H N N 153 HIS HD2 H N N 154 HIS HE1 H N N 155 HIS HE2 H N N 156 HIS HXT H N N 157 HOH O O N N 158 HOH H1 H N N 159 HOH H2 H N N 160 ILE N N N N 161 ILE CA C N S 162 ILE C C N N 163 ILE O O N N 164 ILE CB C N S 165 ILE CG1 C N N 166 ILE CG2 C N N 167 ILE CD1 C N N 168 ILE OXT O N N 169 ILE H H N N 170 ILE H2 H N N 171 ILE HA H N N 172 ILE HB H N N 173 ILE HG12 H N N 174 ILE HG13 H N N 175 ILE HG21 H N N 176 ILE HG22 H N N 177 ILE HG23 H N N 178 ILE HD11 H N N 179 ILE HD12 H N N 180 ILE HD13 H N N 181 ILE HXT H N N 182 LEU N N N N 183 LEU CA C N S 184 LEU C C N N 185 LEU O O N N 186 LEU CB C N N 187 LEU CG C N N 188 LEU CD1 C N N 189 LEU CD2 C N N 190 LEU OXT O N N 191 LEU H H N N 192 LEU H2 H N N 193 LEU HA H N N 194 LEU HB2 H N N 195 LEU HB3 H N N 196 LEU HG H N N 197 LEU HD11 H N N 198 LEU HD12 H N N 199 LEU HD13 H N N 200 LEU HD21 H N N 201 LEU HD22 H N N 202 LEU HD23 H N N 203 LEU HXT H N N 204 LYS N N N N 205 LYS CA C N S 206 LYS C C N N 207 LYS O O N N 208 LYS CB C N N 209 LYS CG C N N 210 LYS CD C N N 211 LYS CE C N N 212 LYS NZ N N N 213 LYS OXT O N N 214 LYS H H N N 215 LYS H2 H N N 216 LYS HA H N N 217 LYS HB2 H N N 218 LYS HB3 H N N 219 LYS HG2 H N N 220 LYS HG3 H N N 221 LYS HD2 H N N 222 LYS HD3 H N N 223 LYS HE2 H N N 224 LYS HE3 H N N 225 LYS HZ1 H N N 226 LYS HZ2 H N N 227 LYS HZ3 H N N 228 LYS HXT H N N 229 MET N N N N 230 MET CA C N S 231 MET C C N N 232 MET O O N N 233 MET CB C N N 234 MET CG C N N 235 MET SD S N N 236 MET CE C N N 237 MET OXT O N N 238 MET H H N N 239 MET H2 H N N 240 MET HA H N N 241 MET HB2 H N N 242 MET HB3 H N N 243 MET HG2 H N N 244 MET HG3 H N N 245 MET HE1 H N N 246 MET HE2 H N N 247 MET HE3 H N N 248 MET HXT H N N 249 PHE N N N N 250 PHE CA C N S 251 PHE C C N N 252 PHE O O N N 253 PHE CB C N N 254 PHE CG C Y N 255 PHE CD1 C Y N 256 PHE CD2 C Y N 257 PHE CE1 C Y N 258 PHE CE2 C Y N 259 PHE CZ C Y N 260 PHE OXT O N N 261 PHE H H N N 262 PHE H2 H N N 263 PHE HA H N N 264 PHE HB2 H N N 265 PHE HB3 H N N 266 PHE HD1 H N N 267 PHE HD2 H N N 268 PHE HE1 H N N 269 PHE HE2 H N N 270 PHE HZ H N N 271 PHE HXT H N N 272 PRO N N N N 273 PRO CA C N S 274 PRO C C N N 275 PRO O O N N 276 PRO CB C N N 277 PRO CG C N N 278 PRO CD C N N 279 PRO OXT O N N 280 PRO H H N N 281 PRO HA H N N 282 PRO HB2 H N N 283 PRO HB3 H N N 284 PRO HG2 H N N 285 PRO HG3 H N N 286 PRO HD2 H N N 287 PRO HD3 H N N 288 PRO HXT H N N 289 SER N N N N 290 SER CA C N S 291 SER C C N N 292 SER O O N N 293 SER CB C N N 294 SER OG O N N 295 SER OXT O N N 296 SER H H N N 297 SER H2 H N N 298 SER HA H N N 299 SER HB2 H N N 300 SER HB3 H N N 301 SER HG H N N 302 SER HXT H N N 303 SF4 FE1 FE N N 304 SF4 FE2 FE N N 305 SF4 FE3 FE N N 306 SF4 FE4 FE N N 307 SF4 S1 S N N 308 SF4 S2 S N N 309 SF4 S3 S N N 310 SF4 S4 S N N 311 SO4 S S N N 312 SO4 O1 O N N 313 SO4 O2 O N N 314 SO4 O3 O N N 315 SO4 O4 O N N 316 THR N N N N 317 THR CA C N S 318 THR C C N N 319 THR O O N N 320 THR CB C N R 321 THR OG1 O N N 322 THR CG2 C N N 323 THR OXT O N N 324 THR H H N N 325 THR H2 H N N 326 THR HA H N N 327 THR HB H N N 328 THR HG1 H N N 329 THR HG21 H N N 330 THR HG22 H N N 331 THR HG23 H N N 332 THR HXT H N N 333 TRP N N N N 334 TRP CA C N S 335 TRP C C N N 336 TRP O O N N 337 TRP CB C N N 338 TRP CG C Y N 339 TRP CD1 C Y N 340 TRP CD2 C Y N 341 TRP NE1 N Y N 342 TRP CE2 C Y N 343 TRP CE3 C Y N 344 TRP CZ2 C Y N 345 TRP CZ3 C Y N 346 TRP CH2 C Y N 347 TRP OXT O N N 348 TRP H H N N 349 TRP H2 H N N 350 TRP HA H N N 351 TRP HB2 H N N 352 TRP HB3 H N N 353 TRP HD1 H N N 354 TRP HE1 H N N 355 TRP HE3 H N N 356 TRP HZ2 H N N 357 TRP HZ3 H N N 358 TRP HH2 H N N 359 TRP HXT H N N 360 TYR N N N N 361 TYR CA C N S 362 TYR C C N N 363 TYR O O N N 364 TYR CB C N N 365 TYR CG C Y N 366 TYR CD1 C Y N 367 TYR CD2 C Y N 368 TYR CE1 C Y N 369 TYR CE2 C Y N 370 TYR CZ C Y N 371 TYR OH O N N 372 TYR OXT O N N 373 TYR H H N N 374 TYR H2 H N N 375 TYR HA H N N 376 TYR HB2 H N N 377 TYR HB3 H N N 378 TYR HD1 H N N 379 TYR HD2 H N N 380 TYR HE1 H N N 381 TYR HE2 H N N 382 TYR HH H N N 383 TYR HXT H N N 384 URA N1 N N N 385 URA C2 C N N 386 URA O2 O N N 387 URA N3 N N N 388 URA C4 C N N 389 URA O4 O N N 390 URA C5 C N N 391 URA C6 C N N 392 URA HN1 H N N 393 URA HN3 H N N 394 URA H5 H N N 395 URA H6 H N N 396 VAL N N N N 397 VAL CA C N S 398 VAL C C N N 399 VAL O O N N 400 VAL CB C N N 401 VAL CG1 C N N 402 VAL CG2 C N N 403 VAL OXT O N N 404 VAL H H N N 405 VAL H2 H N N 406 VAL HA H N N 407 VAL HB H N N 408 VAL HG11 H N N 409 VAL HG12 H N N 410 VAL HG13 H N N 411 VAL HG21 H N N 412 VAL HG22 H N N 413 VAL HG23 H N N 414 VAL HXT H N N 415 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 HIS N CA sing N N 129 HIS N H sing N N 130 HIS N H2 sing N N 131 HIS CA C sing N N 132 HIS CA CB sing N N 133 HIS CA HA sing N N 134 HIS C O doub N N 135 HIS C OXT sing N N 136 HIS CB CG sing N N 137 HIS CB HB2 sing N N 138 HIS CB HB3 sing N N 139 HIS CG ND1 sing Y N 140 HIS CG CD2 doub Y N 141 HIS ND1 CE1 doub Y N 142 HIS ND1 HD1 sing N N 143 HIS CD2 NE2 sing Y N 144 HIS CD2 HD2 sing N N 145 HIS CE1 NE2 sing Y N 146 HIS CE1 HE1 sing N N 147 HIS NE2 HE2 sing N N 148 HIS OXT HXT sing N N 149 HOH O H1 sing N N 150 HOH O H2 sing N N 151 ILE N CA sing N N 152 ILE N H sing N N 153 ILE N H2 sing N N 154 ILE CA C sing N N 155 ILE CA CB sing N N 156 ILE CA HA sing N N 157 ILE C O doub N N 158 ILE C OXT sing N N 159 ILE CB CG1 sing N N 160 ILE CB CG2 sing N N 161 ILE CB HB sing N N 162 ILE CG1 CD1 sing N N 163 ILE CG1 HG12 sing N N 164 ILE CG1 HG13 sing N N 165 ILE CG2 HG21 sing N N 166 ILE CG2 HG22 sing N N 167 ILE CG2 HG23 sing N N 168 ILE CD1 HD11 sing N N 169 ILE CD1 HD12 sing N N 170 ILE CD1 HD13 sing N N 171 ILE OXT HXT sing N N 172 LEU N CA sing N N 173 LEU N H sing N N 174 LEU N H2 sing N N 175 LEU CA C sing N N 176 LEU CA CB sing N N 177 LEU CA HA sing N N 178 LEU C O doub N N 179 LEU C OXT sing N N 180 LEU CB CG sing N N 181 LEU CB HB2 sing N N 182 LEU CB HB3 sing N N 183 LEU CG CD1 sing N N 184 LEU CG CD2 sing N N 185 LEU CG HG sing N N 186 LEU CD1 HD11 sing N N 187 LEU CD1 HD12 sing N N 188 LEU CD1 HD13 sing N N 189 LEU CD2 HD21 sing N N 190 LEU CD2 HD22 sing N N 191 LEU CD2 HD23 sing N N 192 LEU OXT HXT sing N N 193 LYS N CA sing N N 194 LYS N H sing N N 195 LYS N H2 sing N N 196 LYS CA C sing N N 197 LYS CA CB sing N N 198 LYS CA HA sing N N 199 LYS C O doub N N 200 LYS C OXT sing N N 201 LYS CB CG sing N N 202 LYS CB HB2 sing N N 203 LYS CB HB3 sing N N 204 LYS CG CD sing N N 205 LYS CG HG2 sing N N 206 LYS CG HG3 sing N N 207 LYS CD CE sing N N 208 LYS CD HD2 sing N N 209 LYS CD HD3 sing N N 210 LYS CE NZ sing N N 211 LYS CE HE2 sing N N 212 LYS CE HE3 sing N N 213 LYS NZ HZ1 sing N N 214 LYS NZ HZ2 sing N N 215 LYS NZ HZ3 sing N N 216 LYS OXT HXT sing N N 217 MET N CA sing N N 218 MET N H sing N N 219 MET N H2 sing N N 220 MET CA C sing N N 221 MET CA CB sing N N 222 MET CA HA sing N N 223 MET C O doub N N 224 MET C OXT sing N N 225 MET CB CG sing N N 226 MET CB HB2 sing N N 227 MET CB HB3 sing N N 228 MET CG SD sing N N 229 MET CG HG2 sing N N 230 MET CG HG3 sing N N 231 MET SD CE sing N N 232 MET CE HE1 sing N N 233 MET CE HE2 sing N N 234 MET CE HE3 sing N N 235 MET OXT HXT sing N N 236 PHE N CA sing N N 237 PHE N H sing N N 238 PHE N H2 sing N N 239 PHE CA C sing N N 240 PHE CA CB sing N N 241 PHE CA HA sing N N 242 PHE C O doub N N 243 PHE C OXT sing N N 244 PHE CB CG sing N N 245 PHE CB HB2 sing N N 246 PHE CB HB3 sing N N 247 PHE CG CD1 doub Y N 248 PHE CG CD2 sing Y N 249 PHE CD1 CE1 sing Y N 250 PHE CD1 HD1 sing N N 251 PHE CD2 CE2 doub Y N 252 PHE CD2 HD2 sing N N 253 PHE CE1 CZ doub Y N 254 PHE CE1 HE1 sing N N 255 PHE CE2 CZ sing Y N 256 PHE CE2 HE2 sing N N 257 PHE CZ HZ sing N N 258 PHE OXT HXT sing N N 259 PRO N CA sing N N 260 PRO N CD sing N N 261 PRO N H sing N N 262 PRO CA C sing N N 263 PRO CA CB sing N N 264 PRO CA HA sing N N 265 PRO C O doub N N 266 PRO C OXT sing N N 267 PRO CB CG sing N N 268 PRO CB HB2 sing N N 269 PRO CB HB3 sing N N 270 PRO CG CD sing N N 271 PRO CG HG2 sing N N 272 PRO CG HG3 sing N N 273 PRO CD HD2 sing N N 274 PRO CD HD3 sing N N 275 PRO OXT HXT sing N N 276 SER N CA sing N N 277 SER N H sing N N 278 SER N H2 sing N N 279 SER CA C sing N N 280 SER CA CB sing N N 281 SER CA HA sing N N 282 SER C O doub N N 283 SER C OXT sing N N 284 SER CB OG sing N N 285 SER CB HB2 sing N N 286 SER CB HB3 sing N N 287 SER OG HG sing N N 288 SER OXT HXT sing N N 289 SF4 FE1 S2 sing N N 290 SF4 FE1 S3 sing N N 291 SF4 FE1 S4 sing N N 292 SF4 FE2 S1 sing N N 293 SF4 FE2 S3 sing N N 294 SF4 FE2 S4 sing N N 295 SF4 FE3 S1 sing N N 296 SF4 FE3 S2 sing N N 297 SF4 FE3 S4 sing N N 298 SF4 FE4 S1 sing N N 299 SF4 FE4 S2 sing N N 300 SF4 FE4 S3 sing N N 301 SO4 S O1 doub N N 302 SO4 S O2 doub N N 303 SO4 S O3 sing N N 304 SO4 S O4 sing N N 305 THR N CA sing N N 306 THR N H sing N N 307 THR N H2 sing N N 308 THR CA C sing N N 309 THR CA CB sing N N 310 THR CA HA sing N N 311 THR C O doub N N 312 THR C OXT sing N N 313 THR CB OG1 sing N N 314 THR CB CG2 sing N N 315 THR CB HB sing N N 316 THR OG1 HG1 sing N N 317 THR CG2 HG21 sing N N 318 THR CG2 HG22 sing N N 319 THR CG2 HG23 sing N N 320 THR OXT HXT sing N N 321 TRP N CA sing N N 322 TRP N H sing N N 323 TRP N H2 sing N N 324 TRP CA C sing N N 325 TRP CA CB sing N N 326 TRP CA HA sing N N 327 TRP C O doub N N 328 TRP C OXT sing N N 329 TRP CB CG sing N N 330 TRP CB HB2 sing N N 331 TRP CB HB3 sing N N 332 TRP CG CD1 doub Y N 333 TRP CG CD2 sing Y N 334 TRP CD1 NE1 sing Y N 335 TRP CD1 HD1 sing N N 336 TRP CD2 CE2 doub Y N 337 TRP CD2 CE3 sing Y N 338 TRP NE1 CE2 sing Y N 339 TRP NE1 HE1 sing N N 340 TRP CE2 CZ2 sing Y N 341 TRP CE3 CZ3 doub Y N 342 TRP CE3 HE3 sing N N 343 TRP CZ2 CH2 doub Y N 344 TRP CZ2 HZ2 sing N N 345 TRP CZ3 CH2 sing Y N 346 TRP CZ3 HZ3 sing N N 347 TRP CH2 HH2 sing N N 348 TRP OXT HXT sing N N 349 TYR N CA sing N N 350 TYR N H sing N N 351 TYR N H2 sing N N 352 TYR CA C sing N N 353 TYR CA CB sing N N 354 TYR CA HA sing N N 355 TYR C O doub N N 356 TYR C OXT sing N N 357 TYR CB CG sing N N 358 TYR CB HB2 sing N N 359 TYR CB HB3 sing N N 360 TYR CG CD1 doub Y N 361 TYR CG CD2 sing Y N 362 TYR CD1 CE1 sing Y N 363 TYR CD1 HD1 sing N N 364 TYR CD2 CE2 doub Y N 365 TYR CD2 HD2 sing N N 366 TYR CE1 CZ doub Y N 367 TYR CE1 HE1 sing N N 368 TYR CE2 CZ sing Y N 369 TYR CE2 HE2 sing N N 370 TYR CZ OH sing N N 371 TYR OH HH sing N N 372 TYR OXT HXT sing N N 373 URA N1 C2 sing N N 374 URA N1 C6 sing N N 375 URA N1 HN1 sing N N 376 URA C2 O2 doub N N 377 URA C2 N3 sing N N 378 URA N3 C4 sing N N 379 URA N3 HN3 sing N N 380 URA C4 O4 doub N N 381 URA C4 C5 sing N N 382 URA C5 C6 doub N N 383 URA C5 H5 sing N N 384 URA C6 H6 sing N N 385 VAL N CA sing N N 386 VAL N H sing N N 387 VAL N H2 sing N N 388 VAL CA C sing N N 389 VAL CA CB sing N N 390 VAL CA HA sing N N 391 VAL C O doub N N 392 VAL C OXT sing N N 393 VAL CB CG1 sing N N 394 VAL CB CG2 sing N N 395 VAL CB HB sing N N 396 VAL CG1 HG11 sing N N 397 VAL CG1 HG12 sing N N 398 VAL CG1 HG13 sing N N 399 VAL CG2 HG21 sing N N 400 VAL CG2 HG22 sing N N 401 VAL CG2 HG23 sing N N 402 VAL OXT HXT sing N N 403 # _pdbx_initial_refinement_model.accession_code 1UI1 _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.details 'Selenomethionyl uracil-DNA glycosylase from Thermus thermophilus HB8' # _atom_sites.entry_id 1UI0 _atom_sites.fract_transf_matrix[1][1] 0.022012 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.016803 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.012350 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C FE N O S # loop_