data_1UO0 # _entry.id 1UO0 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 1UO0 PDBE EBI-13504 WWPDB D_1290013504 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.content_type _pdbx_database_related.details PDB 1GCL unspecified 'GCN4 LEUCINE ZIPPER CORE MUTANT P-LI' PDB 1GCM unspecified 'GCN4 LEUCINE ZIPPER CORE MUTANT P-LI' PDB 1UNT unspecified 'STRUCTURE BASED ENGINEERING OF INTERNAL MOLECULAR SURFACES OF FOUR HELIX BUNDLES' PDB 1UNV unspecified 'STRUCTURE BASED ENGINEERING OF INTERNAL MOLECULAR SURFACES OF FOUR HELIX BUNDLES' PDB 1UNW unspecified 'STRUCTURE BASED ENGINEERING OF INTERNAL MOLECULAR SURFACES OF FOUR HELIX BUNDLES' PDB 1UNX unspecified 'STRUCTURE BASED ENGINEERING OF INTERNAL MOLECULAR SURFACES OF FOUR HELIX BUNDLES' PDB 1UNU unspecified 'STRUCTURE BASED ENGINEERING OF INTERNAL MOLECULAR SURFACES OF FOUR HELIX BUNDLES' PDB 1UNY unspecified 'STRUCTURE BASED ENGINEERING OF INTERNAL MOLECULAR SURFACES OF FOUR HELIX BUNDLES' PDB 1UNZ unspecified 'STRUCTURE BASED ENGINEERING OF INTERNAL MOLECULAR SURFACES OF FOUR HELIX BUNDLES' PDB 1UO1 unspecified 'STRUCTURE BASED ENGINEERING OF INTERNAL MOLECULAR SURFACES OF FOUR HELIX BUNDLES' PDB 1UO2 unspecified 'STRUCTURE BASED ENGINEERING OF INTERNAL MOLECULAR SURFACES OF FOUR HELIX BUNDLES' PDB 1UO3 unspecified 'STRUCTURE BASED ENGINEERING OF INTERNAL MOLECULAR SURFACES OF FOUR HELIX BUNDLES' PDB 1UO4 unspecified 'STRUCTURE BASED ENGINEERING OF INTERNAL MOLECULAR SURFACES OF FOUR HELIX BUNDLES' PDB 1UO5 unspecified 'STRUCTURE BASED ENGINEERING OF INTERNAL MOLECULAR SURFACES OF FOUR HELIX BUNDLES' PDB 1CE9 unspecified 'HELIX CAPPING IN THE GCN4 LEUCINE ZIPPER' PDB 1DGC unspecified 'GCN4 LEUCINE ZIPPER COMPLEXED WITH SPECIFIC ATF/CREB SITE DEOXYRIBONUCLEIC ACID' PDB 1ENV unspecified 'ATOMIC STRUCTURE OF THE ECTODOMAIN FROM HIV -1 GP41' PDB 1FAV unspecified 'THE STRUCTURE OF AN HIV-1 SPECIFIC CELL ENTRY INHIBITOR INCOMPLEX WITH THE HIV-1 GP41 TRIMERIC CORE' PDB 1GK6 unspecified 'HUMAN VIMENTIN COIL 2B FRAGMENT LINKED TO GCN4 LEUCINE ZIPPER (Z2B)' PDB 1GZL unspecified 'CRYSTAL STRUCTURE OF C14LINKMID/IQN17: A CROSS-LINKED INHIBITOR OF HIV-1 ENTRY BOUND TO THE GP41 HYDROPHOBIC POCKET' PDB 1IHQ unspecified 'GLYTM1BZIP: A CHIMERIC PEPTIDE MODEL OF THE N-TERMINUS OF ARAT SHORT ALPHA TROPOMYOSIN WITH THE N-TERMINUS ENCODED BYEXON 1B' PDB 1IJ0 unspecified 'COILED COIL TRIMER GCN4-PVLS SER AT BURIED D POSITION' PDB 1IJ1 unspecified 'GCN4-PVLT COILED-COIL TRIMER WITH THREONINE AT THE D(12)POSITION' PDB 1IJ2 unspecified 'GCN4-PVTL COILED-COIL TRIMER WITH THREONINE AT THE A(16)POSITION' PDB 1IJ3 unspecified 'GCN4-PVSL COILED-COIL TRIMER WITH SERINE AT THE A(16)POSITION' PDB 1KQL unspecified 'CRYSTAL STRUCTURE OF THE C-TERMINAL REGION OF STRIATEDMUSCLE ALPHA-TROPOMYOSIN AT 2.7 ANGSTROM RESOLUTION' PDB 1LD4 unspecified 'PLACEMENT OF THE STRUCTURAL PROTEINS IN SINDBIS VIRUS' PDB 1LLM unspecified 'CRYSTAL STRUCTURE OF A ZIF23-GCN4 CHIMERA BOUND TO DNA' PDB 1NKN unspecified 'VISUALIZING AN UNSTABLE COILED COIL: THE CRYSTAL STRUCTUREOF AN N-TERMINAL SEGMENT OF THE SCALLOP MYOSIN ROD' PDB 1PIQ unspecified 'CRYSTAL STRUCTURE OF GCN4-PIQ, A TRIMERIC COILED COIL WITH BURIED POLAR RESIDUES' PDB 1RB1 unspecified 'GCN4-LEUCINE ZIPPER CORE MUTANT AS N16A TRIGONAL AUTOMATICSOLUTION' PDB 1RB4 unspecified 'ANTIPARALLEL TRIMER OF GCN4-LEUCINE ZIPPER CORE MUTANT ASN16A TETRAGONAL AUTOMATIC SOLUTION' PDB 1RB5 unspecified 'ANTIPARALLEL TRIMER OF GCN4-LEUCINE ZIPPER CORE MUTANT ASN16A TRIGONAL FORM' PDB 1RB6 unspecified 'ANTIPARALLEL TRIMER OF GCN4-LEUCINE ZIPPER CORE MUTANT ASN16A TETRAGONAL FORM' PDB 1SWI unspecified 'GCN4-LEUCINE ZIPPER CORE MUTANT AS N16A COMPLEXED WITH BENZENE' PDB 1TMZ unspecified 'TMZIP: A CHIMERIC PEPTIDE MODEL OF THE N- TERMINUS OF ALPHA TROPOMYOSIN, NMR, 15 STRUCTURES' PDB 1W5G unspecified 'AN ANTI-PARALLEL FOUR HELIX BUNDLE ( ACETIMIDE MODIFICATION).' PDB 1W5H unspecified 'AN ANTI-PARALLEL FOUR HELIX BUNDLE.' PDB 1W5I unspecified 'ABA DOES NOT AFFECT TOPOLOGY OF PLI.' PDB 1W5J unspecified 'AN ANTI-PARALLEL FOUR HELIX BUNDLE' PDB 1W5K unspecified 'AN ANTI-PARALLEL FOUR HELIX BUNDLE' PDB 1W5L unspecified 'AN ANTI-PARALLEL TO PARALLEL SWITCH.' PDB 1YSA unspecified 'GCN4 (BASIC REGION, LEUCINE ZIPPER) COMPLEX WITH AP-1 DEOXYRIBONUCLEIC ACID' PDB 1ZII unspecified 'GCN4-LEUCINE ZIPPER CORE MUTANT ASN16ABA IN THE DIMERIC STATE' PDB 1ZIJ unspecified 'GCN4-LEUCINE ZIPPER CORE MUTANT ASN16ABA IN THE TRIMERIC STATE' PDB 1ZIK unspecified 'GCN4-LEUCINE ZIPPER CORE MUTANT ASN16LYS IN THE DIMERIC STATE' PDB 1ZIL unspecified 'GCN4-LEUCINE ZIPPER CORE MUTANT ASN16GLN IN THE DIMERIC STATE' PDB 1ZIM unspecified 'GCN4-LEUCINE ZIPPER CORE MUTANT ASN16GLN IN THE TRIMERIC STATE' PDB 1ZTA unspecified 'LEUCINE ZIPPER MONOMER (NMR, 20 STRUCTURES)' PDB 2DGC unspecified 'GCN4 BASIC DOMAIN, LEUCINE ZIPPER COMPLEXED WITH ATF/CREB SITE DEOXYRIBONUCLEIC ACID' PDB 2ZTA unspecified 'GCN4 LEUCINE ZIPPER' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1UO0 _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2003-09-15 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Yadav, M.K.' 1 'Redman, J.E.' 2 'Alvarez-Gutierrez, J.M.' 3 'Zhang, Y.' 4 'Stout, C.D.' 5 'Ghadiri, M.R.' 6 # _citation.id primary _citation.title 'Structure-Based Engineering of Internal Cavities in Coiled-Coil Peptides' _citation.journal_abbrev Biochemistry _citation.journal_volume 44 _citation.page_first 9723 _citation.page_last ? _citation.year 2005 _citation.journal_id_ASTM BICHAW _citation.country US _citation.journal_id_ISSN 0006-2960 _citation.journal_id_CSD 0033 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 16008357 _citation.pdbx_database_id_DOI 10.1021/BI050742A # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Yadav, M.K.' 1 primary 'Redman, J.E.' 2 primary 'Leman, L.J.' 3 primary 'Alvarez-Gutierrez, J.M.' 4 primary 'Zhang, Y.' 5 primary 'Stout, C.D.' 6 primary 'Ghadiri, M.R.' 7 # _cell.entry_id 1UO0 _cell.length_a 79.265 _cell.length_b 79.265 _cell.length_c 79.265 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 48 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1UO0 _symmetry.space_group_name_H-M 'P 41 3 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 213 # _entity.id 1 _entity.type polymer _entity.src_method syn _entity.pdbx_description 'GENERAL CONTROL PROTEIN GCN4' _entity.formula_weight 4030.757 _entity.pdbx_number_of_molecules 2 _entity.pdbx_ec ? _entity.pdbx_mutation YES _entity.pdbx_fragment ? _entity.details 'DIMER ASYMMETRIC UNIT OF FOUR HELIX BUNDLE MUTATION LEU26ALA' # _entity_name_com.entity_id 1 _entity_name_com.name 'GCN4 LEUCINE ZIPPER, AMINO ACID BIOSYNTHESIS REGULATORY PROTEIN, PLI' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(ACE)RMKQIEDKLEEILSKLYHIENELARAKKLLGER' _entity_poly.pdbx_seq_one_letter_code_can XRMKQIEDKLEEILSKLYHIENELARAKKLLGER _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ACE n 1 2 ARG n 1 3 MET n 1 4 LYS n 1 5 GLN n 1 6 ILE n 1 7 GLU n 1 8 ASP n 1 9 LYS n 1 10 LEU n 1 11 GLU n 1 12 GLU n 1 13 ILE n 1 14 LEU n 1 15 SER n 1 16 LYS n 1 17 LEU n 1 18 TYR n 1 19 HIS n 1 20 ILE n 1 21 GLU n 1 22 ASN n 1 23 GLU n 1 24 LEU n 1 25 ALA n 1 26 ARG n 1 27 ALA n 1 28 LYS n 1 29 LYS n 1 30 LEU n 1 31 LEU n 1 32 GLY n 1 33 GLU n 1 34 ARG n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific 'SACCHAROMYCES CEREVISIAE' _pdbx_entity_src_syn.organism_common_name ;BAKER'S YEAST ; _pdbx_entity_src_syn.ncbi_taxonomy_id 4932 _pdbx_entity_src_syn.details ;BASED ON SEQUENCE FROM SACCHAROMYCES CEREVISIAE (BAKER'S YEAST) ; # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform 1 PDB 1UO0 1 ? ? 1UO0 ? 2 UNP GCN4_YEAST 1 ? ? P03069 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1UO0 A 1 ? 1 ? 1UO0 -1 ? -1 ? -1 -1 2 2 1UO0 A 2 ? 34 ? P03069 249 ? 281 ? 1 33 3 1 1UO0 B 1 ? 1 ? 1UO0 -1 ? -1 ? -1 -1 4 2 1UO0 B 2 ? 34 ? P03069 249 ? 281 ? 1 33 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 1UO0 ILE A 6 ? UNP P03069 LEU 253 conflict 5 1 1 1UO0 LEU A 10 ? UNP P03069 VAL 257 conflict 9 2 1 1UO0 ILE A 13 ? UNP P03069 LEU 260 conflict 12 3 1 1UO0 LEU A 17 ? UNP P03069 ASN 264 conflict 16 4 1 1UO0 ILE A 20 ? UNP P03069 LEU 267 conflict 19 5 1 1UO0 LEU A 24 ? UNP P03069 VAL 271 conflict 23 6 1 1UO0 ALA A 27 ? UNP P03069 LEU 274 'engineered mutation' 26 7 1 1UO0 LEU A 31 ? UNP P03069 VAL 278 conflict 30 8 3 1UO0 ILE B 6 ? UNP P03069 LEU 253 conflict 5 9 3 1UO0 LEU B 10 ? UNP P03069 VAL 257 conflict 9 10 3 1UO0 ILE B 13 ? UNP P03069 LEU 260 conflict 12 11 3 1UO0 LEU B 17 ? UNP P03069 ASN 264 conflict 16 12 3 1UO0 ILE B 20 ? UNP P03069 LEU 267 conflict 19 13 3 1UO0 LEU B 24 ? UNP P03069 VAL 271 conflict 23 14 3 1UO0 ALA B 27 ? UNP P03069 LEU 274 'engineered mutation' 26 15 3 1UO0 LEU B 31 ? UNP P03069 VAL 278 conflict 30 16 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ACE non-polymer . 'ACETYL GROUP' ? 'C2 H4 O' 44.053 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1UO0 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.5 _exptl_crystal.density_percent_sol 50 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.00 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '2.5 M NACL, 100 MM NAAC, 200 MM LI2SO4, PH 4.5' # _diffrn.id 1 _diffrn.ambient_temp 114.0 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector ? _diffrn_detector.type ? _diffrn_detector.pdbx_collection_date 2002-10-15 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU RU200' _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength 1.5418 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 1UO0 _reflns.observed_criterion_sigma_I 2.000 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 35.448 _reflns.d_resolution_high 2.214 _reflns.number_obs 3657 _reflns.number_all ? _reflns.percent_possible_obs 100.0 _reflns.pdbx_Rmerge_I_obs 0.12300 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 5.8000 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 12.300 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 1UO0 _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 3488 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 55.90 _refine.ls_d_res_high 2.40 _refine.ls_percent_reflns_obs 99.83 _refine.ls_R_factor_obs 0.22883 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.22603 _refine.ls_R_factor_R_free 0.29885 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.3 _refine.ls_number_reflns_R_free 158 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 39.946 _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.335 _refine.pdbx_overall_ESU_R_Free 0.281 _refine.overall_SU_ML 0.167 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 7.078 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 520 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 520 _refine_hist.d_res_high 2.40 _refine_hist.d_res_low 55.90 # _struct.entry_id 1UO0 _struct.title 'Structure Based Engineering of Internal Molecular Surfaces Of Four Helix Bundles' _struct.pdbx_descriptor 'GENERAL CONTROL PROTEIN GCN4' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1UO0 _struct_keywords.pdbx_keywords 'FOUR HELIX BUNDLE' _struct_keywords.text 'FOUR HELIX BUNDLE, CAVITY' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ARG A 2 ? LEU A 31 ? ARG A 1 LEU A 30 1 ? 30 HELX_P HELX_P2 2 ARG B 2 ? LEU B 31 ? ARG B 1 LEU B 30 1 ? 30 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _database_PDB_matrix.entry_id 1UO0 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1UO0 _atom_sites.fract_transf_matrix[1][1] 0.012616 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.012616 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.012616 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ACE 1 -1 ? ? ? A . n A 1 2 ARG 2 1 1 ARG ARG A . n A 1 3 MET 3 2 2 MET MET A . n A 1 4 LYS 4 3 3 LYS LYS A . n A 1 5 GLN 5 4 4 GLN GLN A . n A 1 6 ILE 6 5 5 ILE ILE A . n A 1 7 GLU 7 6 6 GLU GLU A . n A 1 8 ASP 8 7 7 ASP ASP A . n A 1 9 LYS 9 8 8 LYS LYS A . n A 1 10 LEU 10 9 9 LEU LEU A . n A 1 11 GLU 11 10 10 GLU GLU A . n A 1 12 GLU 12 11 11 GLU GLU A . n A 1 13 ILE 13 12 12 ILE ILE A . n A 1 14 LEU 14 13 13 LEU LEU A . n A 1 15 SER 15 14 14 SER SER A . n A 1 16 LYS 16 15 15 LYS LYS A . n A 1 17 LEU 17 16 16 LEU LEU A . n A 1 18 TYR 18 17 17 TYR TYR A . n A 1 19 HIS 19 18 18 HIS HIS A . n A 1 20 ILE 20 19 19 ILE ILE A . n A 1 21 GLU 21 20 20 GLU GLU A . n A 1 22 ASN 22 21 21 ASN ASN A . n A 1 23 GLU 23 22 22 GLU GLU A . n A 1 24 LEU 24 23 23 LEU LEU A . n A 1 25 ALA 25 24 24 ALA ALA A . n A 1 26 ARG 26 25 25 ARG ARG A . n A 1 27 ALA 27 26 26 ALA ALA A . n A 1 28 LYS 28 27 27 LYS LYS A . n A 1 29 LYS 29 28 28 LYS LYS A . n A 1 30 LEU 30 29 29 LEU LEU A . n A 1 31 LEU 31 30 30 LEU LEU A . n A 1 32 GLY 32 31 31 GLY GLY A . n A 1 33 GLU 33 32 32 GLU GLU A . n A 1 34 ARG 34 33 ? ? ? A . n B 1 1 ACE 1 -1 ? ? ? B . n B 1 2 ARG 2 1 1 ARG ARG B . n B 1 3 MET 3 2 2 MET MET B . n B 1 4 LYS 4 3 3 LYS LYS B . n B 1 5 GLN 5 4 4 GLN GLN B . n B 1 6 ILE 6 5 5 ILE ILE B . n B 1 7 GLU 7 6 6 GLU GLU B . n B 1 8 ASP 8 7 7 ASP ASP B . n B 1 9 LYS 9 8 8 LYS LYS B . n B 1 10 LEU 10 9 9 LEU LEU B . n B 1 11 GLU 11 10 10 GLU GLU B . n B 1 12 GLU 12 11 11 GLU GLU B . n B 1 13 ILE 13 12 12 ILE ILE B . n B 1 14 LEU 14 13 13 LEU LEU B . n B 1 15 SER 15 14 14 SER SER B . n B 1 16 LYS 16 15 15 LYS LYS B . n B 1 17 LEU 17 16 16 LEU LEU B . n B 1 18 TYR 18 17 17 TYR TYR B . n B 1 19 HIS 19 18 18 HIS HIS B . n B 1 20 ILE 20 19 19 ILE ILE B . n B 1 21 GLU 21 20 20 GLU GLU B . n B 1 22 ASN 22 21 21 ASN ASN B . n B 1 23 GLU 23 22 22 GLU GLU B . n B 1 24 LEU 24 23 23 LEU LEU B . n B 1 25 ALA 25 24 24 ALA ALA B . n B 1 26 ARG 26 25 25 ARG ARG B . n B 1 27 ALA 27 26 26 ALA ALA B . n B 1 28 LYS 28 27 27 LYS LYS B . n B 1 29 LYS 29 28 28 LYS LYS B . n B 1 30 LEU 30 29 29 LEU LEU B . n B 1 31 LEU 31 30 30 LEU LEU B . n B 1 32 GLY 32 31 31 GLY GLY B . n B 1 33 GLU 33 32 32 GLU GLU B . n B 1 34 ARG 34 33 ? ? ? B . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 19_655 -x+7/4,-z+3/4,-y+3/4 -1.0000000000 0.0000000000 0.0000000000 138.7137500000 0.0000000000 0.0000000000 -1.0000000000 59.4487500000 0.0000000000 -1.0000000000 0.0000000000 59.4487500000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2004-10-13 2 'Structure model' 1 1 2011-05-08 3 'Structure model' 1 2 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement . ? 1 CrystalClear 'data reduction' '(MSC/RIGAKU)' ? 2 SCALA 'data scaling' . ? 3 MOLREP phasing . ? 4 # _pdbx_entry_details.entry_id 1UO0 _pdbx_entry_details.compound_details 'ENGINEERED RESIDUE LEU 274 ALA, CHAINS A AND B' _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 CA A SER 14 ? ? CB A SER 14 ? ? 1.619 1.525 0.094 0.015 N 2 1 CB A SER 14 ? ? OG A SER 14 ? ? 1.335 1.418 -0.083 0.013 N 3 1 N A LYS 15 ? ? CA A LYS 15 ? ? 1.308 1.459 -0.151 0.020 N 4 1 CD1 A TYR 17 ? ? CE1 A TYR 17 ? ? 1.288 1.389 -0.101 0.015 N 5 1 CE1 A TYR 17 ? ? CZ A TYR 17 ? ? 1.253 1.381 -0.128 0.013 N 6 1 CD A GLU 20 ? ? OE2 A GLU 20 ? ? 1.337 1.252 0.085 0.011 N 7 1 CD A GLU 22 ? ? OE1 A GLU 22 ? ? 1.424 1.252 0.172 0.011 N 8 1 CD A GLU 22 ? ? OE2 A GLU 22 ? ? 1.359 1.252 0.107 0.011 N 9 1 CE A LYS 28 ? ? NZ A LYS 28 ? ? 1.677 1.486 0.191 0.025 N 10 1 NE B ARG 1 ? ? CZ B ARG 1 ? ? 1.417 1.326 0.091 0.013 N 11 1 CG B GLU 6 ? ? CD B GLU 6 ? ? 1.643 1.515 0.128 0.015 N 12 1 CD B GLU 6 ? ? OE1 B GLU 6 ? ? 1.384 1.252 0.132 0.011 N 13 1 CD B GLU 6 ? ? OE2 B GLU 6 ? ? 1.347 1.252 0.095 0.011 N 14 1 CD B LYS 8 ? ? CE B LYS 8 ? ? 1.716 1.508 0.208 0.025 N 15 1 CE B LYS 8 ? ? NZ B LYS 8 ? ? 1.660 1.486 0.174 0.025 N 16 1 CD B GLU 11 ? ? OE1 B GLU 11 ? ? 1.342 1.252 0.090 0.011 N 17 1 CB B ILE 12 ? ? CG2 B ILE 12 ? ? 1.298 1.524 -0.226 0.031 N 18 1 CD B GLU 20 ? ? OE1 B GLU 20 ? ? 1.331 1.252 0.079 0.011 N 19 1 CD B GLU 20 ? ? OE2 B GLU 20 ? ? 1.170 1.252 -0.082 0.011 N 20 1 CG B LYS 28 ? ? CD B LYS 28 ? ? 1.771 1.520 0.251 0.034 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 CB A LEU 13 ? ? CG A LEU 13 ? ? CD1 A LEU 13 ? ? 122.02 111.00 11.02 1.70 N 2 1 O A GLY 31 ? ? C A GLY 31 ? ? N A GLU 32 ? ? 110.18 122.70 -12.52 1.60 Y 3 1 NE B ARG 1 ? ? CZ B ARG 1 ? ? NH1 B ARG 1 ? ? 126.77 120.30 6.47 0.50 N 4 1 OE1 B GLU 22 ? ? CD B GLU 22 ? ? OE2 B GLU 22 ? ? 113.32 123.30 -9.98 1.20 N 5 1 CB B LEU 29 ? ? CG B LEU 29 ? ? CD2 B LEU 29 ? ? 122.18 111.00 11.18 1.70 N # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A GLU 32 ? CA ? A GLU 33 CA 2 1 Y 1 A GLU 32 ? C ? A GLU 33 C 3 1 Y 1 A GLU 32 ? O ? A GLU 33 O 4 1 Y 1 A GLU 32 ? CB ? A GLU 33 CB 5 1 Y 1 A GLU 32 ? CG ? A GLU 33 CG 6 1 Y 1 A GLU 32 ? CD ? A GLU 33 CD 7 1 Y 1 A GLU 32 ? OE1 ? A GLU 33 OE1 8 1 Y 1 A GLU 32 ? OE2 ? A GLU 33 OE2 9 1 Y 1 B GLU 32 ? CA ? B GLU 33 CA 10 1 Y 1 B GLU 32 ? C ? B GLU 33 C 11 1 Y 1 B GLU 32 ? O ? B GLU 33 O 12 1 Y 1 B GLU 32 ? CB ? B GLU 33 CB 13 1 Y 1 B GLU 32 ? CG ? B GLU 33 CG 14 1 Y 1 B GLU 32 ? CD ? B GLU 33 CD 15 1 Y 1 B GLU 32 ? OE1 ? B GLU 33 OE1 16 1 Y 1 B GLU 32 ? OE2 ? B GLU 33 OE2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A ACE -1 ? A ACE 1 2 1 Y 1 A ARG 33 ? A ARG 34 3 1 Y 1 B ACE -1 ? B ACE 1 4 1 Y 1 B ARG 33 ? B ARG 34 #