HEADER ENDOCYTOSIS 08-DEC-03 1UTC TITLE CLATHRIN TERMINAL DOMAIN COMPLEXED WITH TLPWDLWTT COMPND MOL_ID: 1; COMPND 2 MOLECULE: CLATHRIN HEAVY CHAIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: TERMINAL DOMAIN, RESIDUES 1-363; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: AMPHIPHYSIN; COMPND 8 CHAIN: P, Q; COMPND 9 FRAGMENT: W-BOX, RESIDUES 379-387; COMPND 10 ENGINEERED: YES; COMPND 11 OTHER_DETAILS: PEPTIDE FROM AMPHIPHYSIN 1 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BOS TAURUS; SOURCE 3 ORGANISM_COMMON: BOVINE; SOURCE 4 ORGANISM_TAXID: 9913; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI DH5[ALPHA]; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 668369; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PGEX4T2; SOURCE 9 MOL_ID: 2; SOURCE 10 SYNTHETIC: YES; SOURCE 11 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 12 ORGANISM_COMMON: HUMAN; SOURCE 13 ORGANISM_TAXID: 9606 KEYWDS ENDOCYTOSIS, CLATHRIN, CYTOSKELETON EXPDTA X-RAY DIFFRACTION AUTHOR A.E.MIELE,P.R.EVANS,D.J.OWEN REVDAT 5 13-DEC-23 1UTC 1 REMARK REVDAT 4 16-OCT-19 1UTC 1 REMARK REVDAT 3 28-FEB-18 1UTC 1 SOURCE JRNL REVDAT 2 24-FEB-09 1UTC 1 VERSN REVDAT 1 25-FEB-04 1UTC 0 JRNL AUTH A.E.MIELE,P.J.WATSON,P.R.EVANS,L.M.TRAUB,D.J.OWEN JRNL TITL TWO DISTINCT INTERACTION MOTIFS IN AMPHIPHYSIN BIND TWO JRNL TITL 2 INDEPENDENT SITES ON THE CLATHRIN TERMINAL DOMAIN JRNL TITL 3 BETA-PROPELLER. JRNL REF NAT. STRUCT. MOL. BIOL. V. 11 242 2004 JRNL REFN ISSN 1545-9993 JRNL PMID 14981508 JRNL DOI 10.1038/NSMB736 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.9999 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 105.41 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 35214 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.197 REMARK 3 R VALUE (WORKING SET) : 0.194 REMARK 3 FREE R VALUE : 0.253 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1856 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2493 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2300 REMARK 3 BIN FREE R VALUE SET COUNT : 115 REMARK 3 BIN FREE R VALUE : 0.3030 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5649 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 357 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.21 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.72000 REMARK 3 B22 (A**2) : 0.72000 REMARK 3 B33 (A**2) : -1.44000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.334 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.245 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.173 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.030 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.934 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.892 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5773 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 5262 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7834 ; 1.567 ; 1.929 REMARK 3 BOND ANGLES OTHERS (DEGREES): 12281 ; 0.882 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 715 ; 7.194 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 257 ;40.882 ;24.942 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1002 ;16.685 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 26 ;21.587 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 887 ; 0.099 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6365 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1101 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 888 ; 0.184 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 4940 ; 0.187 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 3241 ; 0.086 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 277 ; 0.215 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): 1 ; 0.039 ; 0.200 REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 15 ; 0.173 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 59 ; 0.201 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 23 ; 0.224 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4661 ; 1.312 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1450 ; 0.172 ; 1.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5832 ; 1.506 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2549 ; 2.065 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2002 ; 2.912 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 1UTC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 08-DEC-03. REMARK 100 THE DEPOSITION ID IS D_1290014153. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 9.00 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SRS REMARK 200 BEAMLINE : PX9.6 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.87 REMARK 200 MONOCHROMATOR : SI REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37228 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 24.920 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 5.840 REMARK 200 R MERGE (I) : 0.05700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.3131 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.42 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.4 REMARK 200 DATA REDUNDANCY IN SHELL : 4.33 REMARK 200 R MERGE FOR SHELL (I) : 0.33000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.020 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1C9I REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.28 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.38 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: VAPOUR DIFFUSION OVER A RESERVOIR REMARK 280 CONTAINING 20% PEG8000, 200 MM MGCL2, 4 MM DTT,100 MM CAPS PH 9, REMARK 280 DRIED UP DROP, PH 9.00, VAPOR DIFFUSION, HANGING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 210.26000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 30.65050 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 30.65050 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 105.13000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 30.65050 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 30.65050 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 315.39000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 30.65050 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 30.65050 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 105.13000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 30.65050 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 30.65050 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 315.39000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 210.26000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: CLATHRIN HEAVY CHAIN IS A MONOMER REMARK 300 BIOLOGICALLY BUTIS CLASSIFIED AS A DIMER IN THIS REMARK 300 ENTRY SINCE EVERYMOLECULE OF CLATHRIN (CHAINS A REMARK 300 AND B) ARE BOUND TOA PEPTIDE. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, P REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, Q REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 CLATHRIN IS THE MAJOR PROTEIN OF THE POLYHEDRAL COAT OF REMARK 400 COATED PITS & VESICLES. TWO DIFFERENT ADAPTOR PROTEIN COMPLEXES REMARK 400 LINK THE CLATHRIN LATTICE EITHER TO THE PLASMA MEMBRANE OR TO THE REMARK 400 TRANS GOLGI NETWORK. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 GLN A 3 REMARK 465 ASN A 356 REMARK 465 LEU A 357 REMARK 465 ALA A 358 REMARK 465 GLY A 359 REMARK 465 ALA A 360 REMARK 465 GLU A 361 REMARK 465 GLU A 362 REMARK 465 LEU A 363 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 ASN B 356 REMARK 465 LEU B 357 REMARK 465 ALA B 358 REMARK 465 GLY B 359 REMARK 465 ALA B 360 REMARK 465 GLU B 361 REMARK 465 GLU B 362 REMARK 465 LEU B 363 REMARK 465 THR P 8 REMARK 465 THR P 9 REMARK 465 THR Q 8 REMARK 465 THR Q 9 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 2144 O HOH A 2145 2.00 REMARK 500 O HOH A 2044 O HOH A 2109 2.07 REMARK 500 OE2 GLU B 332 O HOH B 2176 2.08 REMARK 500 NZ LYS A 227 OD1 ASP A 249 2.10 REMARK 500 O HOH B 2036 O HOH B 2116 2.12 REMARK 500 O HOH B 2115 O HOH B 2116 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 69 CB - CG - OD2 ANGL. DEV. = 7.2 DEGREES REMARK 500 ARG A 157 NE - CZ - NH2 ANGL. DEV. = -4.0 DEGREES REMARK 500 ASP A 187 CB - CG - OD2 ANGL. DEV. = 5.8 DEGREES REMARK 500 ASP B 69 CB - CG - OD2 ANGL. DEV. = 6.2 DEGREES REMARK 500 ASP B 106 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 ARG B 157 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 ASP B 159 CB - CG - OD2 ANGL. DEV. = 5.6 DEGREES REMARK 500 ASP B 346 CB - CG - OD2 ANGL. DEV. = 5.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 76 -47.23 -131.68 REMARK 500 ALA A 256 53.57 -116.17 REMARK 500 LEU B 13 139.21 -173.69 REMARK 500 ASN B 17 0.69 -68.19 REMARK 500 ASN B 60 68.15 -110.87 REMARK 500 LYS B 96 53.69 33.42 REMARK 500 SER B 115 -167.17 -161.90 REMARK 500 SER B 136 133.84 -30.00 REMARK 500 GLN B 173 114.54 -170.60 REMARK 500 ASN B 175 64.14 15.49 REMARK 500 ALA B 224 20.60 -67.16 REMARK 500 LYS B 245 134.65 -39.86 REMARK 500 ASN B 344 70.68 -117.32 REMARK 500 ARG B 354 0.50 -67.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1B89 RELATED DB: PDB REMARK 900 CLATHRIN HEAVY CHAIN PROXIMAL LEG SEGMENT (BOVINE) REMARK 900 RELATED ID: 1KY7 RELATED DB: PDB REMARK 900 THE AP-2 CLATHRIN ADAPTOR ALPHA-APPENDAGE IN COMPLEX WITH REMARK 900 AMPHIPHYSIN FXDXF DBREF 1UTC A 1 363 UNP P49951 CLH_BOVIN 1 363 DBREF 1UTC B 1 363 UNP P49951 CLH_BOVIN 1 363 DBREF 1UTC P 1 9 UNP P49418 AMPH_HUMAN 379 387 DBREF 1UTC Q 1 9 UNP P49418 AMPH_HUMAN 379 387 SEQRES 1 A 363 MET ALA GLN ILE LEU PRO ILE ARG PHE GLN GLU HIS LEU SEQRES 2 A 363 GLN LEU GLN ASN LEU GLY ILE ASN PRO ALA ASN ILE GLY SEQRES 3 A 363 PHE SER THR LEU THR MET GLU SER ASP LYS PHE ILE CYS SEQRES 4 A 363 ILE ARG GLU LYS VAL GLY GLU GLN ALA GLN VAL VAL ILE SEQRES 5 A 363 ILE ASP MET ASN ASP PRO SER ASN PRO ILE ARG ARG PRO SEQRES 6 A 363 ILE SER ALA ASP SER ALA ILE MET ASN PRO ALA SER LYS SEQRES 7 A 363 VAL ILE ALA LEU LYS ALA GLY LYS THR LEU GLN ILE PHE SEQRES 8 A 363 ASN ILE GLU MET LYS SER LYS MET LYS ALA HIS THR MET SEQRES 9 A 363 THR ASP ASP VAL THR PHE TRP LYS TRP ILE SER LEU ASN SEQRES 10 A 363 THR VAL ALA LEU VAL THR ASP ASN ALA VAL TYR HIS TRP SEQRES 11 A 363 SER MET GLU GLY GLU SER GLN PRO VAL LYS MET PHE ASP SEQRES 12 A 363 ARG HIS SER SER LEU ALA GLY CYS GLN ILE ILE ASN TYR SEQRES 13 A 363 ARG THR ASP ALA LYS GLN LYS TRP LEU LEU LEU THR GLY SEQRES 14 A 363 ILE SER ALA GLN GLN ASN ARG VAL VAL GLY ALA MET GLN SEQRES 15 A 363 LEU TYR SER VAL ASP ARG LYS VAL SER GLN PRO ILE GLU SEQRES 16 A 363 GLY HIS ALA ALA SER PHE ALA GLN PHE LYS MET GLU GLY SEQRES 17 A 363 ASN ALA GLU GLU SER THR LEU PHE CYS PHE ALA VAL ARG SEQRES 18 A 363 GLY GLN ALA GLY GLY LYS LEU HIS ILE ILE GLU VAL GLY SEQRES 19 A 363 THR PRO PRO THR GLY ASN GLN PRO PHE PRO LYS LYS ALA SEQRES 20 A 363 VAL ASP VAL PHE PHE PRO PRO GLU ALA GLN ASN ASP PHE SEQRES 21 A 363 PRO VAL ALA MET GLN ILE SER GLU LYS HIS ASP VAL VAL SEQRES 22 A 363 PHE LEU ILE THR LYS TYR GLY TYR ILE HIS LEU TYR ASP SEQRES 23 A 363 LEU GLU THR GLY THR CYS ILE TYR MET ASN ARG ILE SER SEQRES 24 A 363 GLY GLU THR ILE PHE VAL THR ALA PRO HIS GLU ALA THR SEQRES 25 A 363 ALA GLY ILE ILE GLY VAL ASN ARG LYS GLY GLN VAL LEU SEQRES 26 A 363 SER VAL CYS VAL GLU GLU GLU ASN ILE ILE PRO TYR ILE SEQRES 27 A 363 THR ASN VAL LEU GLN ASN PRO ASP LEU ALA LEU ARG MET SEQRES 28 A 363 ALA VAL ARG ASN ASN LEU ALA GLY ALA GLU GLU LEU SEQRES 1 B 363 MET ALA GLN ILE LEU PRO ILE ARG PHE GLN GLU HIS LEU SEQRES 2 B 363 GLN LEU GLN ASN LEU GLY ILE ASN PRO ALA ASN ILE GLY SEQRES 3 B 363 PHE SER THR LEU THR MET GLU SER ASP LYS PHE ILE CYS SEQRES 4 B 363 ILE ARG GLU LYS VAL GLY GLU GLN ALA GLN VAL VAL ILE SEQRES 5 B 363 ILE ASP MET ASN ASP PRO SER ASN PRO ILE ARG ARG PRO SEQRES 6 B 363 ILE SER ALA ASP SER ALA ILE MET ASN PRO ALA SER LYS SEQRES 7 B 363 VAL ILE ALA LEU LYS ALA GLY LYS THR LEU GLN ILE PHE SEQRES 8 B 363 ASN ILE GLU MET LYS SER LYS MET LYS ALA HIS THR MET SEQRES 9 B 363 THR ASP ASP VAL THR PHE TRP LYS TRP ILE SER LEU ASN SEQRES 10 B 363 THR VAL ALA LEU VAL THR ASP ASN ALA VAL TYR HIS TRP SEQRES 11 B 363 SER MET GLU GLY GLU SER GLN PRO VAL LYS MET PHE ASP SEQRES 12 B 363 ARG HIS SER SER LEU ALA GLY CYS GLN ILE ILE ASN TYR SEQRES 13 B 363 ARG THR ASP ALA LYS GLN LYS TRP LEU LEU LEU THR GLY SEQRES 14 B 363 ILE SER ALA GLN GLN ASN ARG VAL VAL GLY ALA MET GLN SEQRES 15 B 363 LEU TYR SER VAL ASP ARG LYS VAL SER GLN PRO ILE GLU SEQRES 16 B 363 GLY HIS ALA ALA SER PHE ALA GLN PHE LYS MET GLU GLY SEQRES 17 B 363 ASN ALA GLU GLU SER THR LEU PHE CYS PHE ALA VAL ARG SEQRES 18 B 363 GLY GLN ALA GLY GLY LYS LEU HIS ILE ILE GLU VAL GLY SEQRES 19 B 363 THR PRO PRO THR GLY ASN GLN PRO PHE PRO LYS LYS ALA SEQRES 20 B 363 VAL ASP VAL PHE PHE PRO PRO GLU ALA GLN ASN ASP PHE SEQRES 21 B 363 PRO VAL ALA MET GLN ILE SER GLU LYS HIS ASP VAL VAL SEQRES 22 B 363 PHE LEU ILE THR LYS TYR GLY TYR ILE HIS LEU TYR ASP SEQRES 23 B 363 LEU GLU THR GLY THR CYS ILE TYR MET ASN ARG ILE SER SEQRES 24 B 363 GLY GLU THR ILE PHE VAL THR ALA PRO HIS GLU ALA THR SEQRES 25 B 363 ALA GLY ILE ILE GLY VAL ASN ARG LYS GLY GLN VAL LEU SEQRES 26 B 363 SER VAL CYS VAL GLU GLU GLU ASN ILE ILE PRO TYR ILE SEQRES 27 B 363 THR ASN VAL LEU GLN ASN PRO ASP LEU ALA LEU ARG MET SEQRES 28 B 363 ALA VAL ARG ASN ASN LEU ALA GLY ALA GLU GLU LEU SEQRES 1 P 9 THR LEU PRO TRP ASP LEU TRP THR THR SEQRES 1 Q 9 THR LEU PRO TRP ASP LEU TRP THR THR FORMUL 5 HOH *357(H2 O) HELIX 1 1 GLN A 16 GLY A 19 5 4 HELIX 2 2 ASN A 21 ILE A 25 5 5 HELIX 3 3 HIS A 145 ALA A 149 5 5 HELIX 4 4 ASN A 333 VAL A 341 1 9 HELIX 5 5 ASN A 344 ASN A 355 1 12 HELIX 6 6 GLN B 16 GLY B 19 5 4 HELIX 7 7 ASN B 21 ILE B 25 5 5 HELIX 8 8 HIS B 145 ALA B 149 5 5 HELIX 9 9 ASN B 333 VAL B 341 1 9 HELIX 10 10 ASN B 344 ARG B 354 1 11 HELIX 11 11 PRO P 3 TRP P 7 5 5 HELIX 12 12 PRO Q 3 TRP Q 7 5 5 SHEET 1 AA 4 ILE A 7 GLN A 14 0 SHEET 2 AA 4 GLN A 323 VAL A 329 -1 O VAL A 324 N HIS A 12 SHEET 3 AA 4 GLY A 314 ASN A 319 -1 O ILE A 315 N VAL A 327 SHEET 4 AA 4 ILE A 303 HIS A 309 -1 N PHE A 304 O VAL A 318 SHEET 1 AB 4 LEU A 30 THR A 31 0 SHEET 2 AB 4 PHE A 37 VAL A 44 -1 O CYS A 39 N THR A 31 SHEET 3 AB 4 GLN A 47 ASP A 54 -1 O GLN A 47 N VAL A 44 SHEET 4 AB 4 ILE A 62 PRO A 65 -1 O ILE A 62 N ILE A 52 SHEET 1 AC 4 SER A 70 MET A 73 0 SHEET 2 AC 4 VAL A 79 ALA A 84 -1 O ALA A 81 N ILE A 72 SHEET 3 AC 4 THR A 87 ASN A 92 -1 O THR A 87 N ALA A 84 SHEET 4 AC 4 SER A 97 THR A 103 -1 O SER A 97 N ASN A 92 SHEET 1 AD 4 PHE A 110 TRP A 113 0 SHEET 2 AD 4 THR A 118 VAL A 122 -1 O ALA A 120 N LYS A 112 SHEET 3 AD 4 ALA A 126 SER A 131 -1 O TYR A 128 N LEU A 121 SHEET 4 AD 4 VAL A 139 ASP A 143 -1 O VAL A 139 N HIS A 129 SHEET 1 AE 4 GLN A 152 THR A 158 0 SHEET 2 AE 4 TRP A 164 GLN A 173 -1 O LEU A 166 N ARG A 157 SHEET 3 AE 4 ARG A 176 SER A 185 -1 O ARG A 176 N GLN A 173 SHEET 4 AE 4 VAL A 190 ILE A 194 -1 O VAL A 190 N SER A 185 SHEET 1 AF 4 ALA A 198 PHE A 204 0 SHEET 2 AF 4 SER A 213 GLY A 222 -1 O SER A 213 N PHE A 204 SHEET 3 AF 4 GLY A 225 GLU A 232 -1 O GLY A 225 N GLY A 222 SHEET 4 AF 4 LYS A 246 ASP A 249 -1 O LYS A 246 N ILE A 230 SHEET 1 AG 4 PRO A 261 SER A 267 0 SHEET 2 AG 4 VAL A 272 THR A 277 -1 O VAL A 272 N SER A 267 SHEET 3 AG 4 TYR A 281 ASP A 286 -1 O TYR A 281 N THR A 277 SHEET 4 AG 4 CYS A 292 ARG A 297 -1 N ILE A 293 O LEU A 284 SHEET 1 BA 4 ILE B 7 GLN B 14 0 SHEET 2 BA 4 GLN B 323 VAL B 329 -1 O VAL B 324 N HIS B 12 SHEET 3 BA 4 GLY B 314 ASN B 319 -1 O ILE B 315 N VAL B 327 SHEET 4 BA 4 ILE B 303 HIS B 309 -1 N PHE B 304 O VAL B 318 SHEET 1 BB 4 LEU B 30 SER B 34 0 SHEET 2 BB 4 PHE B 37 VAL B 44 -1 O PHE B 37 N SER B 34 SHEET 3 BB 4 GLN B 47 ASP B 54 -1 O GLN B 47 N VAL B 44 SHEET 4 BB 4 ILE B 62 PRO B 65 -1 O ILE B 62 N ILE B 52 SHEET 1 BC 4 SER B 70 MET B 73 0 SHEET 2 BC 4 VAL B 79 ALA B 84 -1 O ALA B 81 N ILE B 72 SHEET 3 BC 4 THR B 87 ASN B 92 -1 O THR B 87 N ALA B 84 SHEET 4 BC 4 SER B 97 THR B 103 -1 O SER B 97 N ASN B 92 SHEET 1 BD 4 PHE B 110 TRP B 113 0 SHEET 2 BD 4 THR B 118 VAL B 122 -1 O ALA B 120 N LYS B 112 SHEET 3 BD 4 ALA B 126 SER B 131 -1 O TYR B 128 N LEU B 121 SHEET 4 BD 4 VAL B 139 ASP B 143 -1 O VAL B 139 N HIS B 129 SHEET 1 BE 4 GLN B 152 THR B 158 0 SHEET 2 BE 4 TRP B 164 ALA B 172 -1 O LEU B 166 N ARG B 157 SHEET 3 BE 4 VAL B 177 SER B 185 -1 O VAL B 178 N SER B 171 SHEET 4 BE 4 VAL B 190 GLU B 195 -1 O VAL B 190 N SER B 185 SHEET 1 BF 4 ALA B 198 PHE B 204 0 SHEET 2 BF 4 SER B 213 GLY B 222 -1 O SER B 213 N PHE B 204 SHEET 3 BF 4 GLY B 225 GLU B 232 -1 O GLY B 225 N GLY B 222 SHEET 4 BF 4 LYS B 246 ASP B 249 -1 O LYS B 246 N ILE B 230 SHEET 1 BG 4 PRO B 261 SER B 267 0 SHEET 2 BG 4 VAL B 272 THR B 277 -1 O VAL B 272 N SER B 267 SHEET 3 BG 4 TYR B 281 ASP B 286 -1 O TYR B 281 N THR B 277 SHEET 4 BG 4 CYS B 292 ARG B 297 -1 N ILE B 293 O LEU B 284 CRYST1 61.301 61.301 420.520 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016313 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016313 0.000000 0.00000 SCALE3 0.000000 0.000000 0.002378 0.00000 MTRIX1 1 -0.999979 -0.005338 0.003620 51.64200 1 MTRIX2 1 0.004533 -0.182310 0.983231 43.00300 1 MTRIX3 1 -0.004588 0.983227 0.182330 -36.08900 1