HEADER HYDROLASE 10-DEC-03 1UTT TITLE CRYSTAL STRUCTURE OF MMP-12 COMPLEXED TO 2-(1,3-DIOXO-1,3-DIHYDRO-2H- TITLE 2 ISOINDOL-2-YL)ETHYL-4-(4-ETHOXY[1,1-BIPHENYL]-4-YL)-4-OXOBUTANOIC TITLE 3 ACID COMPND MOL_ID: 1; COMPND 2 MOLECULE: MACROPHAGE METALLOELASTASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: CATALYTIC DOMAIN, RESIDUES 106-264; COMPND 5 SYNONYM: HME, MATRIX METALLOPROTEINASE-12, MMP-12, MACROPHAGE COMPND 6 ELASTASE, ME; COMPND 7 EC: 3.4.24.65; COMPND 8 ENGINEERED: YES; COMPND 9 OTHER_DETAILS: COMPLEXED WITH A SMALL MOLECULE INHIBITOR 2-(1,3- COMPND 10 DIOXO-1,3-DIHYDRO-2H-ISOINDOL-2-YL)ETHYL-4-(4-ETHOXY[1,1-BIPHENYL]-4- COMPND 11 YL)-4-OXOBUTANOIC ACID FORMULA C19H19N2O4S, AND ALSO WITH COMPND 12 ACETOHYDROXAMIC ACID OR 2-HYDROXYAMINO-2-ETHANAL FORMULA, C2H5NO2 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PGEMEX1 KEYWDS MACROPHAGE METALLOELASTASE, NON-ZINC CHELATOR, MMP-12, MMP INHIBITOR, KEYWDS 2 HYDROLASE, METALLOPROTEASE EXPDTA X-RAY DIFFRACTION AUTHOR R.MORALES,S.PERRIER,J.M.FLORENT,J.BELTRA,S.DUFOUR,I.DE MENDEZ, AUTHOR 2 P.MANCEAU,A.TERTRE,F.MOREAU,D.COMPERE,A.C.DUBLANCHET,M.O'GARA REVDAT 5 13-DEC-23 1UTT 1 LINK REVDAT 4 27-FEB-19 1UTT 1 JRNL REMARK REVDAT 3 24-FEB-09 1UTT 1 VERSN REVDAT 2 26-MAY-05 1UTT 1 JRNL REVDAT 1 15-DEC-04 1UTT 0 JRNL AUTH R.MORALES,S.PERRIER,J.M.FLORENT,J.BELTRA,S.DUFOUR, JRNL AUTH 2 I.DE MENDEZ,P.MANCEAU,A.TERTRE,F.MOREAU,D.COMPERE, JRNL AUTH 3 A.C.DUBLANCHET,M.O'GARA JRNL TITL CRYSTAL STRUCTURES OF NOVEL NON-PEPTIDIC, NON-ZINC CHELATING JRNL TITL 2 INHIBITORS BOUND TO MMP-12. JRNL REF J. MOL. BIOL. V. 341 1063 2004 JRNL REFN ISSN 0022-2836 JRNL PMID 15289103 JRNL DOI 10.1016/J.JMB.2004.06.039 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNX 2001 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN,ACCELRYS REMARK 3 : SOFTWARE INC.(BADGER,BERARD,KUMAR,SZALMA, REMARK 3 : YIP,DZAKULA) REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 90.2 REMARK 3 NUMBER OF REFLECTIONS : 17406 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.217 REMARK 3 R VALUE (WORKING SET) : 0.217 REMARK 3 FREE R VALUE : 0.229 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 840 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL WITH ALL DATA. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : NULL REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : NULL REMARK 3 FREE R VALUE (NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE (NO CUTOFF) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 16 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.25 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.00 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 896 REMARK 3 BIN R VALUE (WORKING SET) : 0.2386 REMARK 3 BIN FREE R VALUE : 0.3105 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 51 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1249 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 37 REMARK 3 SOLVENT ATOMS : 97 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.006 REMARK 3 BOND ANGLES (DEGREES) : 1.170 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1UTT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 10-DEC-03. REMARK 100 THE DEPOSITION ID IS D_1290014152. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-JUL-02 REMARK 200 TEMPERATURE (KELVIN) : 293.0 REMARK 200 PH : 6.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NI FILTER REMARK 200 OPTICS : RIGAKU-MSC OSMIC MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU-MSC RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17420 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 6.980 REMARK 200 R MERGE (I) : 0.06800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 25.6300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.28 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 24.00 REMARK 200 R MERGE FOR SHELL (I) : 0.40600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.740 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1JK3 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 71.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M SODIUM CACODYLATE PH 6.4, 1.4M REMARK 280 AMMONIUM ACETATE, 4 C, PH 6.50, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 13555 Y+3/4,X+1/4,-Z+1/4 REMARK 290 14555 -Y+3/4,-X+3/4,-Z+3/4 REMARK 290 15555 Y+1/4,-X+1/4,Z+3/4 REMARK 290 16555 -Y+1/4,X+3/4,Z+1/4 REMARK 290 17555 X+3/4,Z+1/4,-Y+1/4 REMARK 290 18555 -X+1/4,Z+3/4,Y+1/4 REMARK 290 19555 -X+3/4,-Z+3/4,-Y+3/4 REMARK 290 20555 X+1/4,-Z+1/4,Y+3/4 REMARK 290 21555 Z+3/4,Y+1/4,-X+1/4 REMARK 290 22555 Z+1/4,-Y+1/4,X+3/4 REMARK 290 23555 -Z+1/4,Y+3/4,X+1/4 REMARK 290 24555 -Z+3/4,-Y+3/4,-X+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 62.52050 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 62.52050 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 62.52050 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 62.52050 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 62.52050 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 62.52050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 62.52050 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 62.52050 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 62.52050 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 62.52050 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 62.52050 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 62.52050 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 62.52050 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 62.52050 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 62.52050 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 62.52050 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 62.52050 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 62.52050 REMARK 290 SMTRY1 13 0.000000 1.000000 0.000000 93.78075 REMARK 290 SMTRY2 13 1.000000 0.000000 0.000000 31.26025 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 31.26025 REMARK 290 SMTRY1 14 0.000000 -1.000000 0.000000 93.78075 REMARK 290 SMTRY2 14 -1.000000 0.000000 0.000000 93.78075 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 93.78075 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 31.26025 REMARK 290 SMTRY2 15 -1.000000 0.000000 0.000000 31.26025 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 93.78075 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 31.26025 REMARK 290 SMTRY2 16 1.000000 0.000000 0.000000 93.78075 REMARK 290 SMTRY3 16 0.000000 0.000000 1.000000 31.26025 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 93.78075 REMARK 290 SMTRY2 17 0.000000 0.000000 1.000000 31.26025 REMARK 290 SMTRY3 17 0.000000 -1.000000 0.000000 31.26025 REMARK 290 SMTRY1 18 -1.000000 0.000000 0.000000 31.26025 REMARK 290 SMTRY2 18 0.000000 0.000000 1.000000 93.78075 REMARK 290 SMTRY3 18 0.000000 1.000000 0.000000 31.26025 REMARK 290 SMTRY1 19 -1.000000 0.000000 0.000000 93.78075 REMARK 290 SMTRY2 19 0.000000 0.000000 -1.000000 93.78075 REMARK 290 SMTRY3 19 0.000000 -1.000000 0.000000 93.78075 REMARK 290 SMTRY1 20 1.000000 0.000000 0.000000 31.26025 REMARK 290 SMTRY2 20 0.000000 0.000000 -1.000000 31.26025 REMARK 290 SMTRY3 20 0.000000 1.000000 0.000000 93.78075 REMARK 290 SMTRY1 21 0.000000 0.000000 1.000000 93.78075 REMARK 290 SMTRY2 21 0.000000 1.000000 0.000000 31.26025 REMARK 290 SMTRY3 21 -1.000000 0.000000 0.000000 31.26025 REMARK 290 SMTRY1 22 0.000000 0.000000 1.000000 31.26025 REMARK 290 SMTRY2 22 0.000000 -1.000000 0.000000 31.26025 REMARK 290 SMTRY3 22 1.000000 0.000000 0.000000 93.78075 REMARK 290 SMTRY1 23 0.000000 0.000000 -1.000000 31.26025 REMARK 290 SMTRY2 23 0.000000 1.000000 0.000000 93.78075 REMARK 290 SMTRY3 23 1.000000 0.000000 0.000000 31.26025 REMARK 290 SMTRY1 24 0.000000 0.000000 -1.000000 93.78075 REMARK 290 SMTRY2 24 0.000000 -1.000000 0.000000 93.78075 REMARK 290 SMTRY3 24 -1.000000 0.000000 0.000000 93.78075 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: OUR DYNAMIC LIGHT SCATTERING EXPERIMENTS HAVE REMARK 300 SHOWN THATTHE PROTEIN EXISTS AS A MONOMER IN REMARK 300 SOLUTION, SUGGESTINGTHAT THE HEXAMER DESCRIBED IN REMARK 300 REMARK 350 IS AN ARTIFACTOF CRYSTALLIZATION ONLY. REMARK 300 THE PROTEIN IS KNOWN TO FUNCTIONAS A MONOMER REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 125.04100 REMARK 350 BIOMT2 2 0.000000 0.000000 1.000000 -62.52050 REMARK 350 BIOMT3 2 -1.000000 0.000000 0.000000 187.56150 REMARK 350 BIOMT1 3 0.000000 0.000000 -1.000000 187.56150 REMARK 350 BIOMT2 3 -1.000000 0.000000 0.000000 125.04100 REMARK 350 BIOMT3 3 0.000000 1.000000 0.000000 62.52050 REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 93.78075 REMARK 350 BIOMT2 4 1.000000 0.000000 0.000000 -93.78075 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 156.30125 REMARK 350 BIOMT1 5 -1.000000 0.000000 0.000000 218.82175 REMARK 350 BIOMT2 5 0.000000 0.000000 -1.000000 93.78075 REMARK 350 BIOMT3 5 0.000000 -1.000000 0.000000 93.78075 REMARK 350 BIOMT1 6 0.000000 0.000000 1.000000 31.26025 REMARK 350 BIOMT2 6 0.000000 -1.000000 0.000000 31.26025 REMARK 350 BIOMT3 6 1.000000 0.000000 0.000000 -31.26025 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 CA CA A1272 LIES ON A SPECIAL POSITION. REMARK 400 REMARK 400 COMPOUND REMARK 400 MAY BE INVOLVED IN TISSUE INJURY AND REMODELING. HAS REMARK 400 SIGNIFICANT ELASTOLYTIC ACTIVITY. REMARK 400 BINDS 2 ZINC IONS AND 4 CALCIUM IONS PER SUBUNIT. REMARK 400 FOUND IN ALVEOLAR MACROPHAGES BUT NOT IN REMARK 400 PERIPHERAL BLOOD MONOCYTES. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 206 -162.73 -128.90 REMARK 500 PRO A 238 7.98 -67.25 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1271 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 124 OD1 REMARK 620 2 ASP A 124 OD2 49.3 REMARK 620 3 GLU A 199 O 143.2 165.6 REMARK 620 4 GLU A 199 OE2 90.8 91.5 82.3 REMARK 620 5 GLU A 201 O 77.8 119.4 74.7 120.1 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1270 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 158 O REMARK 620 2 GLY A 190 O 155.9 REMARK 620 3 GLY A 192 O 89.8 106.1 REMARK 620 4 ASP A 194 OD2 97.5 99.7 92.3 REMARK 620 5 HOH A2048 O 73.0 91.1 82.0 168.8 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1268 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 168 NE2 REMARK 620 2 ASP A 170 OD2 107.6 REMARK 620 3 HIS A 183 NE2 111.7 119.7 REMARK 620 4 HIS A 196 ND1 113.7 91.4 111.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1272 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 172 NE2 REMARK 620 2 HIS A 172 NE2 104.9 REMARK 620 3 HIS A 172 NE2 106.4 107.7 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1269 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 175 OD2 REMARK 620 2 GLY A 176 O 84.4 REMARK 620 3 GLY A 178 O 84.9 85.6 REMARK 620 4 ILE A 180 O 90.4 174.8 94.1 REMARK 620 5 ASP A 198 OD1 92.5 87.1 172.5 93.0 REMARK 620 6 GLU A 201 OE2 171.2 92.8 86.5 92.4 95.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1267 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 218 NE2 REMARK 620 2 HIS A 222 NE2 100.9 REMARK 620 3 HIS A 228 NE2 109.2 100.2 REMARK 620 4 HAE A1265 O2 122.4 132.3 84.8 REMARK 620 5 HAE A1265 O 96.9 84.1 152.0 72.4 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A1267 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A1268 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A1269 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A1270 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A1271 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A1272 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HAE A1265 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CP8 A1266 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1JIZ RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE ANALYSIS OF HUMAN MACROPHAGE ELASTASE MMP-12 REMARK 900 RELATED ID: 1JK3 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HUMAN MMP-12 (MACROPHAGE ELASTASE) ATTRUE REMARK 900 ATOMIC RESOLUTION REMARK 900 RELATED ID: 1OS2 RELATED DB: PDB REMARK 900 TERNARY ENZYME-PRODUCT-INHIBITOR COMPLEXES OF HUMAN MMP12 REMARK 900 RELATED ID: 1OS9 RELATED DB: PDB REMARK 900 BINARY ENZYME-PRODUCT COMPLEXES OF HUMAN MMP12 REMARK 900 RELATED ID: 1ROS RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF MMP-12 COMPLEXED TO 2 -(1,3-DIOXO-1,3-DIHYDRO- REMARK 900 2H-ISOINDOL-2-YL)ETHYL -4-(4'-ETHOXY[1,1'-BIPHENYL]-4-YL)-4- REMARK 900 OXOBUTANOIC ACID REMARK 900 RELATED ID: 1UTZ RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF MMP-12 COMPLEXED TO (2R)-3-({[4-[(PYRIDIN-4-YL) REMARK 900 PHENYL]-THIEN- 2-YL}CARBOXAMIDO)(PHENYL)PROPANOIC ACID DBREF 1UTT A 106 264 UNP P39900 MM12_HUMAN 106 264 SEQRES 1 A 159 GLY PRO VAL TRP ARG LYS HIS TYR ILE THR TYR ARG ILE SEQRES 2 A 159 ASN ASN TYR THR PRO ASP MET ASN ARG GLU ASP VAL ASP SEQRES 3 A 159 TYR ALA ILE ARG LYS ALA PHE GLN VAL TRP SER ASN VAL SEQRES 4 A 159 THR PRO LEU LYS PHE SER LYS ILE ASN THR GLY MET ALA SEQRES 5 A 159 ASP ILE LEU VAL VAL PHE ALA ARG GLY ALA HIS GLY ASP SEQRES 6 A 159 PHE HIS ALA PHE ASP GLY LYS GLY GLY ILE LEU ALA HIS SEQRES 7 A 159 ALA PHE GLY PRO GLY SER GLY ILE GLY GLY ASP ALA HIS SEQRES 8 A 159 PHE ASP GLU ASP GLU PHE TRP THR THR HIS SER GLY GLY SEQRES 9 A 159 THR ASN LEU PHE LEU THR ALA VAL HIS GLU ILE GLY HIS SEQRES 10 A 159 SER LEU GLY LEU GLY HIS SER SER ASP PRO LYS ALA VAL SEQRES 11 A 159 MET PHE PRO THR TYR LYS TYR VAL ASP ILE ASN THR PHE SEQRES 12 A 159 ARG LEU SER ALA ASP ASP ILE ARG GLY ILE GLN SER LEU SEQRES 13 A 159 TYR GLY ASP HET HAE A1265 5 HET CP8 A1266 26 HET ZN A1267 1 HET ZN A1268 1 HET CA A1269 1 HET CA A1270 1 HET CA A1271 1 HET CA A1272 1 HETNAM HAE ACETOHYDROXAMIC ACID HETNAM CP8 2-(1,3-DIOXO-1,3-DIHYDRO-2H-ISOINDOL-2-YL) ETHYL-4-(4'- HETNAM 2 CP8 ETHOXY [1,1'-BIPHENYL]-4-YL)-4-OXOBUTANOIC ACID HETNAM ZN ZINC ION HETNAM CA CALCIUM ION HETSYN CP8 CP-271485; (6R)-4-BENZYL-6-(1-METHYL-2,2-DIOXIDO-1,3- HETSYN 2 CP8 DIHYDRO-2,1-BENZISOTHIAZOL-5-YL)MORPHOLIN-3-ONE FORMUL 2 HAE C2 H5 N O2 FORMUL 3 CP8 C19 H20 N2 O4 S FORMUL 4 ZN 2(ZN 2+) FORMUL 6 CA 4(CA 2+) FORMUL 10 HOH *97(H2 O) HELIX 1 1 ASN A 126 ASN A 143 1 18 HELIX 2 2 LEU A 212 LEU A 224 1 13 HELIX 3 3 SER A 251 GLY A 263 1 13 SHEET 1 AA 5 LYS A 148 LYS A 151 0 SHEET 2 AA 5 TYR A 113 ILE A 118 1 O ILE A 114 N SER A 150 SHEET 3 AA 5 ILE A 159 ALA A 164 1 O ILE A 159 N ARG A 117 SHEET 4 AA 5 ALA A 195 ASP A 198 1 O ALA A 195 N VAL A 162 SHEET 5 AA 5 ALA A 182 ALA A 184 -1 O HIS A 183 N HIS A 196 SHEET 1 AB 2 TRP A 203 THR A 204 0 SHEET 2 AB 2 THR A 210 ASN A 211 1 O THR A 210 N THR A 204 LINK OD1 ASP A 124 CA CA A1271 1555 1555 2.36 LINK OD2 ASP A 124 CA CA A1271 1555 1555 2.82 LINK O ASP A 158 CA CA A1270 1555 1555 2.37 LINK NE2 HIS A 168 ZN ZN A1268 1555 1555 2.05 LINK OD2 ASP A 170 ZN ZN A1268 1555 1555 2.01 LINK NE2 HIS A 172 CA CA A1272 10646 1555 2.12 LINK NE2 HIS A 172 CA CA A1272 1555 1555 2.09 LINK NE2 HIS A 172 CA CA A1272 7665 1555 2.05 LINK OD2 ASP A 175 CA CA A1269 1555 1555 2.39 LINK O GLY A 176 CA CA A1269 1555 1555 2.24 LINK O GLY A 178 CA CA A1269 1555 1555 2.35 LINK O ILE A 180 CA CA A1269 1555 1555 2.27 LINK NE2 HIS A 183 ZN ZN A1268 1555 1555 2.04 LINK O GLY A 190 CA CA A1270 1555 1555 2.63 LINK O GLY A 192 CA CA A1270 1555 1555 2.35 LINK OD2 ASP A 194 CA CA A1270 1555 1555 2.43 LINK ND1 HIS A 196 ZN ZN A1268 1555 1555 2.02 LINK OD1 ASP A 198 CA CA A1269 1555 1555 2.36 LINK O GLU A 199 CA CA A1271 1555 1555 2.30 LINK OE2 GLU A 199 CA CA A1271 1555 1555 2.35 LINK OE2 GLU A 201 CA CA A1269 1555 1555 2.21 LINK O GLU A 201 CA CA A1271 1555 1555 2.49 LINK NE2 HIS A 218 ZN ZN A1267 1555 1555 2.13 LINK NE2 HIS A 222 ZN ZN A1267 1555 1555 2.15 LINK NE2 HIS A 228 ZN ZN A1267 1555 1555 2.15 LINK O2 HAE A1265 ZN ZN A1267 1555 1555 2.12 LINK O HAE A1265 ZN ZN A1267 1555 1555 2.24 LINK CA CA A1270 O HOH A2048 1555 1555 2.65 SITE 1 AC1 4 HIS A 218 HIS A 222 HIS A 228 HAE A1265 SITE 1 AC2 4 HIS A 168 ASP A 170 HIS A 183 HIS A 196 SITE 1 AC3 6 ASP A 175 GLY A 176 GLY A 178 ILE A 180 SITE 2 AC3 6 ASP A 198 GLU A 201 SITE 1 AC4 5 ASP A 158 GLY A 190 GLY A 192 ASP A 194 SITE 2 AC4 5 HOH A2048 SITE 1 AC5 3 ASP A 124 GLU A 199 GLU A 201 SITE 1 AC6 1 HIS A 172 SITE 1 AC7 9 ALA A 182 HIS A 183 HIS A 218 GLU A 219 SITE 2 AC7 9 HIS A 222 HIS A 228 CP8 A1266 ZN A1267 SITE 3 AC7 9 HOH A2095 SITE 1 AC8 17 GLY A 179 ILE A 180 LEU A 181 ALA A 182 SITE 2 AC8 17 LEU A 214 HIS A 218 GLU A 219 ALA A 234 SITE 3 AC8 17 VAL A 235 PHE A 237 PRO A 238 THR A 239 SITE 4 AC8 17 LYS A 241 HAE A1265 HOH A2067 HOH A2075 SITE 5 AC8 17 HOH A2096 CRYST1 125.041 125.041 125.041 90.00 90.00 90.00 P 41 3 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007997 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007997 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007997 0.00000