HEADER RNA-BINDING PROTEIN 29-JAN-04 1UW4 TITLE THE STRUCTURAL BASIS OF THE INTERACTION BETWEEN NONSENSE TITLE 2 MEDIATED DECAY FACTORS UPF2 AND UPF3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: REGULATOR OF NONSENSE TRANSCRIPTS 2; COMPND 3 CHAIN: B, D; COMPND 4 FRAGMENT: MIF4G DOMAIN, RESIDUES 768-1015; COMPND 5 SYNONYM: UPF2; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: UPF3X; COMPND 9 CHAIN: A, C; COMPND 10 FRAGMENT: RRM DOMAIN, RESIDUES 50-140; COMPND 11 SYNONYM: RNA PROCESSING PROTEIN, UPF3B; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 CELL_LINE: HELA-CELL; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PPROEXHTB; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 12 ORGANISM_COMMON: HUMAN; SOURCE 13 ORGANISM_TAXID: 9606; SOURCE 14 CELL_LINE: HELA-CELL; SOURCE 15 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 17 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 18 EXPRESSION_SYSTEM_PLASMID: PPROEXHTB KEYWDS NONSENSE MEDIATED MRNA DECAY PROTEIN, RNA-BINDING PROTEIN, NMD, RNP KEYWDS 2 DOMAIN, MIF4G DOMAIN EXPDTA X-RAY DIFFRACTION AUTHOR J.KADLEC,E.IZAURRALDE,S.CUSACK REVDAT 5 13-JUL-11 1UW4 1 VERSN REVDAT 4 24-FEB-09 1UW4 1 VERSN REVDAT 3 20-MAY-08 1UW4 1 VERSN REVDAT 2 15-JUN-05 1UW4 1 JRNL REVDAT 1 11-MAR-04 1UW4 0 JRNL AUTH J.KADLEC,E.IZAURRALDE,S.CUSACK JRNL TITL THE STRUCTURAL BASIS FOR THE INTERACTION BETWEEN JRNL TITL 2 NONSENSE-MEDIATED MRNA DECAY FACTORS UPF2 AND UPF3 JRNL REF NAT.STRUCT.MOL.BIOL. V. 11 330 2004 JRNL REFN ISSN 1545-9993 JRNL PMID 15004547 JRNL DOI 10.1038/NSMB741 REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 76925 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.205 REMARK 3 R VALUE (WORKING SET) : 0.204 REMARK 3 FREE R VALUE : 0.227 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2379 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.95 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.00 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5413 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2600 REMARK 3 BIN FREE R VALUE SET COUNT : 167 REMARK 3 BIN FREE R VALUE : 0.3220 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5680 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 314 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.68 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.91000 REMARK 3 B22 (A**2) : 0.67000 REMARK 3 B33 (A**2) : -1.58000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.135 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.125 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.100 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.531 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.947 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.944 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5827 ; 0.010 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 5295 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7890 ; 1.122 ; 1.958 REMARK 3 BOND ANGLES OTHERS (DEGREES): 12327 ; 0.800 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 680 ; 5.103 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 851 ; 0.068 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6373 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1246 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1130 ; 0.197 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 5699 ; 0.217 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 3158 ; 0.079 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 198 ; 0.143 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 12 ; 0.192 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 46 ; 0.300 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 12 ; 0.131 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3413 ; 0.488 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5574 ; 0.927 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2414 ; 1.577 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2316 ; 2.598 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 768 B 1015 REMARK 3 ORIGIN FOR THE GROUP (A): 73.0320 21.8810 138.0120 REMARK 3 T TENSOR REMARK 3 T11: 0.1552 T22: 0.0689 REMARK 3 T33: 0.0542 T12: 0.0116 REMARK 3 T13: -0.0299 T23: -0.0230 REMARK 3 L TENSOR REMARK 3 L11: 0.7787 L22: 0.6223 REMARK 3 L33: 0.8950 L12: 0.1350 REMARK 3 L13: 0.1348 L23: 0.1341 REMARK 3 S TENSOR REMARK 3 S11: -0.0362 S12: -0.0972 S13: 0.0817 REMARK 3 S21: 0.1592 S22: 0.0251 S23: -0.0063 REMARK 3 S31: -0.1169 S32: 0.0104 S33: 0.0111 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 768 D 1015 REMARK 3 ORIGIN FOR THE GROUP (A): 65.4870 21.3110 92.2470 REMARK 3 T TENSOR REMARK 3 T11: 0.0171 T22: 0.0074 REMARK 3 T33: 0.0462 T12: -0.0094 REMARK 3 T13: -0.0193 T23: 0.0181 REMARK 3 L TENSOR REMARK 3 L11: 1.0661 L22: 0.8998 REMARK 3 L33: 1.1172 L12: -0.1786 REMARK 3 L13: 0.2744 L23: -0.2973 REMARK 3 S TENSOR REMARK 3 S11: -0.0179 S12: 0.1124 S13: 0.1373 REMARK 3 S21: -0.0925 S22: -0.0116 S23: 0.0113 REMARK 3 S31: -0.1465 S32: -0.0079 S33: 0.0296 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 50 A 140 REMARK 3 ORIGIN FOR THE GROUP (A): 94.0560 21.7390 127.6310 REMARK 3 T TENSOR REMARK 3 T11: 0.1583 T22: 0.2176 REMARK 3 T33: 0.2609 T12: -0.1105 REMARK 3 T13: -0.0798 T23: -0.0534 REMARK 3 L TENSOR REMARK 3 L11: 2.1064 L22: 2.3592 REMARK 3 L33: 2.6622 L12: -0.3078 REMARK 3 L13: -0.7052 L23: -0.5501 REMARK 3 S TENSOR REMARK 3 S11: -0.0411 S12: 0.0926 S13: 0.0729 REMARK 3 S21: -0.1530 S22: 0.0223 S23: -0.5449 REMARK 3 S31: -0.2221 S32: 0.4320 S33: 0.0188 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 50 C 140 REMARK 3 ORIGIN FOR THE GROUP (A): 44.3810 19.1350 102.4010 REMARK 3 T TENSOR REMARK 3 T11: 0.0428 T22: 0.1536 REMARK 3 T33: 0.2484 T12: 0.0690 REMARK 3 T13: -0.0076 T23: 0.0101 REMARK 3 L TENSOR REMARK 3 L11: 2.1705 L22: 2.6050 REMARK 3 L33: 2.2266 L12: 0.1254 REMARK 3 L13: -0.6378 L23: 0.3739 REMARK 3 S TENSOR REMARK 3 S11: 0.0077 S12: -0.1489 S13: 0.0635 REMARK 3 S21: 0.2404 S22: -0.0461 S23: 0.6212 REMARK 3 S31: -0.1705 S32: -0.4052 S33: 0.0384 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 1UW4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 30-JAN-04. REMARK 100 THE PDBE ID CODE IS EBI-14335. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-APR-03 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 6.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-4 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9393, 0.9792, 0.9795 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : TOROIDAL MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : X-SCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 79316 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 33.700 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 4.300 REMARK 200 R MERGE (I) : 0.06400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.7400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.10 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.6 REMARK 200 DATA REDUNDANCY IN SHELL : 4.00 REMARK 200 R MERGE FOR SHELL (I) : 0.30000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE/RESOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.2 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.9 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM AMMONIUM REMARK 280 ACETATE, 15 MM MAGNESIUM ACETATE REMARK 280 50 MM SODIUM CACODYLATE 6.5, 8% ISOPROPANOL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 35.15300 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 50.08900 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 35.15300 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 50.08900 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 TOTAL BURIED SURFACE AREA: 2470 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21560 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.4 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 TOTAL BURIED SURFACE AREA: 2510 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21670 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.1 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 HOH B2067 LIES ON A SPECIAL POSITION. REMARK 375 HOH D2079 LIES ON A SPECIAL POSITION. REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ALA A 140 O REMARK 470 ASN B1015 O REMARK 470 ASN D1015 O REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 SG CYS B 811 S2 BME B 3016 2.03 REMARK 500 SG CYS D 811 S2 BME D 3016 2.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP B 971 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 ASP D 802 CB - CG - OD2 ANGL. DEV. = 5.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 80 104.34 -167.33 REMARK 500 LYS B 781 -57.15 -123.03 REMARK 500 PHE B 933 47.11 -101.71 REMARK 500 VAL B1014 -50.71 -127.06 REMARK 500 PHE C 80 101.11 -163.12 REMARK 500 LYS D 781 -53.13 -123.23 REMARK 500 PHE D 933 49.37 -101.46 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BME B3016 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BME D3016 DBREF 1UW4 A 50 140 UNP Q9BZI7 Q9BZI7 50 140 DBREF 1UW4 B 768 1015 UNP Q9HAU5 Q9HAU5 768 1015 DBREF 1UW4 C 50 140 UNP Q9BZI7 Q9BZI7 50 140 DBREF 1UW4 D 768 1015 UNP Q9HAU5 Q9HAU5 768 1015 SEQRES 1 A 91 LEU SER LYS VAL VAL ILE ARG ARG LEU PRO PRO THR LEU SEQRES 2 A 91 THR LYS GLU GLN LEU GLN GLU HIS LEU GLN PRO MET PRO SEQRES 3 A 91 GLU HIS ASP TYR PHE GLU PHE PHE SER ASN ASP THR SER SEQRES 4 A 91 LEU TYR PRO HIS MET TYR ALA ARG ALA TYR ILE ASN PHE SEQRES 5 A 91 LYS ASN GLN GLU ASP ILE ILE LEU PHE ARG ASP ARG PHE SEQRES 6 A 91 ASP GLY TYR VAL PHE LEU ASP ASN LYS GLY GLN GLU TYR SEQRES 7 A 91 PRO ALA ILE VAL GLU PHE ALA PRO PHE GLN LYS ALA ALA SEQRES 1 B 248 ARG PRO PRO LEU GLN GLU TYR VAL ARG LYS LEU LEU TYR SEQRES 2 B 248 LYS ASP LEU SER LYS VAL THR THR GLU LYS VAL LEU ARG SEQRES 3 B 248 GLN MET ARG LYS LEU PRO TRP GLN ASP GLN GLU VAL LYS SEQRES 4 B 248 ASP TYR VAL ILE CYS CYS MET ILE ASN ILE TRP ASN VAL SEQRES 5 B 248 LYS TYR ASN SER ILE HIS CYS VAL ALA ASN LEU LEU ALA SEQRES 6 B 248 GLY LEU VAL LEU TYR GLN GLU ASP VAL GLY ILE HIS VAL SEQRES 7 B 248 VAL ASP GLY VAL LEU GLU ASP ILE ARG LEU GLY MET GLU SEQRES 8 B 248 VAL ASN GLN PRO LYS PHE ASN GLN ARG ARG ILE SER SER SEQRES 9 B 248 ALA LYS PHE LEU GLY GLU LEU TYR ASN TYR ARG MET VAL SEQRES 10 B 248 GLU SER ALA VAL ILE PHE ARG THR LEU TYR SER PHE THR SEQRES 11 B 248 SER PHE GLY VAL ASN PRO ASP GLY SER PRO SER SER LEU SEQRES 12 B 248 ASP PRO PRO GLU HIS LEU PHE ARG ILE ARG LEU VAL CYS SEQRES 13 B 248 THR ILE LEU ASP THR CYS GLY GLN TYR PHE ASP ARG GLY SEQRES 14 B 248 SER SER LYS ARG LYS LEU ASP CYS PHE LEU VAL TYR PHE SEQRES 15 B 248 GLN ARG TYR VAL TRP TRP LYS LYS SER LEU GLU VAL TRP SEQRES 16 B 248 THR LYS ASP HIS PRO PHE PRO ILE ASP ILE ASP TYR MET SEQRES 17 B 248 ILE SER ASP THR LEU GLU LEU LEU ARG PRO LYS ILE LYS SEQRES 18 B 248 LEU CYS ASN SER LEU GLU GLU SER ILE ARG GLN VAL GLN SEQRES 19 B 248 ASP LEU GLU ARG GLU PHE LEU ILE LYS LEU GLY LEU VAL SEQRES 20 B 248 ASN SEQRES 1 C 91 LEU SER LYS VAL VAL ILE ARG ARG LEU PRO PRO THR LEU SEQRES 2 C 91 THR LYS GLU GLN LEU GLN GLU HIS LEU GLN PRO MET PRO SEQRES 3 C 91 GLU HIS ASP TYR PHE GLU PHE PHE SER ASN ASP THR SER SEQRES 4 C 91 LEU TYR PRO HIS MET TYR ALA ARG ALA TYR ILE ASN PHE SEQRES 5 C 91 LYS ASN GLN GLU ASP ILE ILE LEU PHE ARG ASP ARG PHE SEQRES 6 C 91 ASP GLY TYR VAL PHE LEU ASP ASN LYS GLY GLN GLU TYR SEQRES 7 C 91 PRO ALA ILE VAL GLU PHE ALA PRO PHE GLN LYS ALA ALA SEQRES 1 D 248 ARG PRO PRO LEU GLN GLU TYR VAL ARG LYS LEU LEU TYR SEQRES 2 D 248 LYS ASP LEU SER LYS VAL THR THR GLU LYS VAL LEU ARG SEQRES 3 D 248 GLN MET ARG LYS LEU PRO TRP GLN ASP GLN GLU VAL LYS SEQRES 4 D 248 ASP TYR VAL ILE CYS CYS MET ILE ASN ILE TRP ASN VAL SEQRES 5 D 248 LYS TYR ASN SER ILE HIS CYS VAL ALA ASN LEU LEU ALA SEQRES 6 D 248 GLY LEU VAL LEU TYR GLN GLU ASP VAL GLY ILE HIS VAL SEQRES 7 D 248 VAL ASP GLY VAL LEU GLU ASP ILE ARG LEU GLY MET GLU SEQRES 8 D 248 VAL ASN GLN PRO LYS PHE ASN GLN ARG ARG ILE SER SER SEQRES 9 D 248 ALA LYS PHE LEU GLY GLU LEU TYR ASN TYR ARG MET VAL SEQRES 10 D 248 GLU SER ALA VAL ILE PHE ARG THR LEU TYR SER PHE THR SEQRES 11 D 248 SER PHE GLY VAL ASN PRO ASP GLY SER PRO SER SER LEU SEQRES 12 D 248 ASP PRO PRO GLU HIS LEU PHE ARG ILE ARG LEU VAL CYS SEQRES 13 D 248 THR ILE LEU ASP THR CYS GLY GLN TYR PHE ASP ARG GLY SEQRES 14 D 248 SER SER LYS ARG LYS LEU ASP CYS PHE LEU VAL TYR PHE SEQRES 15 D 248 GLN ARG TYR VAL TRP TRP LYS LYS SER LEU GLU VAL TRP SEQRES 16 D 248 THR LYS ASP HIS PRO PHE PRO ILE ASP ILE ASP TYR MET SEQRES 17 D 248 ILE SER ASP THR LEU GLU LEU LEU ARG PRO LYS ILE LYS SEQRES 18 D 248 LEU CYS ASN SER LEU GLU GLU SER ILE ARG GLN VAL GLN SEQRES 19 D 248 ASP LEU GLU ARG GLU PHE LEU ILE LYS LEU GLY LEU VAL SEQRES 20 D 248 ASN HET BME B3016 1 HET BME D3016 1 HETNAM BME BETA-MERCAPTOETHANOL FORMUL 5 BME 2(C2 H6 O S) FORMUL 7 HOH *314(H2 O) HELIX 1 1 THR A 63 GLN A 72 1 10 HELIX 2 2 GLN A 104 ASP A 115 1 12 HELIX 3 3 PRO B 769 LYS B 781 1 13 HELIX 4 4 THR B 787 LYS B 797 1 11 HELIX 5 5 ASP B 802 ASN B 815 1 14 HELIX 6 6 ILE B 816 VAL B 819 5 4 HELIX 7 7 LYS B 820 ASN B 822 5 3 HELIX 8 8 SER B 823 VAL B 835 1 13 HELIX 9 9 GLN B 838 ASN B 860 1 23 HELIX 10 10 GLN B 861 LYS B 863 5 3 HELIX 11 11 PHE B 864 TYR B 881 1 18 HELIX 12 12 GLU B 885 PHE B 899 1 15 HELIX 13 13 LEU B 916 GLY B 930 1 15 HELIX 14 14 GLN B 931 PHE B 933 5 3 HELIX 15 15 ARG B 935 SER B 958 1 24 HELIX 16 16 PRO B 969 ARG B 984 1 16 HELIX 17 17 SER B 992 GLY B 1012 1 21 HELIX 18 18 THR C 63 GLN C 72 1 10 HELIX 19 19 ASN C 103 ASP C 115 1 13 HELIX 20 20 PRO D 769 LYS D 781 1 13 HELIX 21 21 SER D 784 VAL D 786 5 3 HELIX 22 22 THR D 787 LYS D 797 1 11 HELIX 23 23 ASP D 802 ASN D 815 1 14 HELIX 24 24 ILE D 816 VAL D 819 5 4 HELIX 25 25 LYS D 820 ASN D 822 5 3 HELIX 26 26 SER D 823 VAL D 835 1 13 HELIX 27 27 GLN D 838 ASN D 860 1 23 HELIX 28 28 GLN D 861 LYS D 863 5 3 HELIX 29 29 PHE D 864 TYR D 881 1 18 HELIX 30 30 GLU D 885 PHE D 899 1 15 HELIX 31 31 LEU D 916 GLY D 930 1 15 HELIX 32 32 GLN D 931 PHE D 933 5 3 HELIX 33 33 ARG D 935 SER D 958 1 24 HELIX 34 34 PRO D 969 ARG D 984 1 16 HELIX 35 35 SER D 992 GLY D 1012 1 21 SHEET 1 AA 4 HIS A 77 SER A 84 0 SHEET 2 AA 4 ALA A 95 PHE A 101 -1 O ARG A 96 N PHE A 83 SHEET 3 AA 4 LYS A 52 LEU A 58 -1 O VAL A 53 N ILE A 99 SHEET 4 AA 4 ILE A 130 PHE A 133 -1 O ILE A 130 N ARG A 56 SHEET 1 AB 2 VAL A 118 LEU A 120 0 SHEET 2 AB 2 GLU A 126 PRO A 128 -1 O TYR A 127 N PHE A 119 SHEET 1 CA 4 HIS C 77 PHE C 83 0 SHEET 2 CA 4 ALA C 95 PHE C 101 -1 O ARG C 96 N PHE C 83 SHEET 3 CA 4 LYS C 52 LEU C 58 -1 O VAL C 53 N ILE C 99 SHEET 4 CA 4 ILE C 130 PHE C 133 -1 O ILE C 130 N ARG C 56 SHEET 1 CB 2 VAL C 118 LEU C 120 0 SHEET 2 CB 2 GLU C 126 PRO C 128 -1 O TYR C 127 N PHE C 119 CISPEP 1 GLN A 72 PRO A 73 0 3.24 CISPEP 2 TYR A 90 PRO A 91 0 5.83 CISPEP 3 GLN C 72 PRO C 73 0 14.42 CISPEP 4 TYR C 90 PRO C 91 0 7.95 SITE 1 AC1 3 CYS B 811 CYS B 812 ASN B 815 SITE 1 AC2 3 CYS D 811 CYS D 812 ASN D 815 CRYST1 70.306 100.178 153.458 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014223 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009982 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006516 0.00000 MTRIX1 1 -0.994500 -0.104000 0.013100 141.41010 1 MTRIX2 1 -0.104100 0.994500 -0.007500 8.24110 1 MTRIX3 1 -0.012200 -0.008900 -0.999900 229.64340 1 MTRIX1 2 -0.993800 -0.108500 0.022400 142.37511 1 MTRIX2 2 -0.108700 0.994000 -0.008700 8.83480 1 MTRIX3 2 -0.021300 -0.011100 -0.999700 228.99249 1