HEADER SIGNALING PROTEIN 25-NOV-03 1V5U TITLE SOLUTION STRUCTURE OF THE C-TERMINAL PLECKSTRIN HOMOLOGY DOMAIN OF TITLE 2 SBF1 FROM MOUSE COMPND MOL_ID: 1; COMPND 2 MOLECULE: SET BINDING FACTOR 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: THE PLECKSTRIN HOMOLOGY DOMAIN; COMPND 5 SYNONYM: SBF1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: RIKEN CDNA 2610510A08; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P030212-74; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS SBF1, MTMR5, THE PLECKSTRIN HOMOLOGY DOMAIN, STRUCTURAL GENOMICS, KEYWDS 2 RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, SIGNALING KEYWDS 3 PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR H.LI,S.KOSHIBA,M.INOUE,T.KIGAWA,S.YOKOYAMA,RIKEN STRUCTURAL AUTHOR 2 GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 4 27-DEC-23 1V5U 1 REMARK REVDAT 3 02-MAR-22 1V5U 1 REMARK SEQADV REVDAT 2 24-FEB-09 1V5U 1 VERSN REVDAT 1 25-MAY-04 1V5U 0 JRNL AUTH H.LI,S.KOSHIBA,M.INOUE,T.KIGAWA,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE C-TERMINAL PLECKSTRIN HOMOLOGY JRNL TITL 2 DOMAIN OF SBF1 FROM MOUSE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 2.6, CYANA 1.0.7 REMARK 3 AUTHORS : BRUKER (XWINNMR), GUENTERT, P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1V5U COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 28-NOV-03. REMARK 100 THE DEPOSITION ID IS D_1000006243. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.28MM PLECKSTRIN HOMOLOGY REMARK 210 DOMAIN U-13C, 15N; 20MM PINA(6.0) REMARK 210 ; 100MM NACL; 1MM D-DTT; 0.02% REMARK 210 NAN3; 90% H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 3D_15N REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20020425, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.854, CYANA 1.0.7 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS,TARGET REMARK 210 FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O VAL A 103 H GLN A 107 1.49 REMARK 500 O ASP A 54 H GLU A 57 1.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 2 -60.22 72.14 REMARK 500 1 SER A 6 174.75 54.61 REMARK 500 1 ARG A 44 109.53 -49.78 REMARK 500 1 MET A 45 72.40 69.69 REMARK 500 1 ALA A 60 179.26 163.12 REMARK 500 1 THR A 67 -169.70 -102.97 REMARK 500 1 THR A 73 -68.34 -101.20 REMARK 500 1 ALA A 78 -52.65 -151.26 REMARK 500 1 GLN A 94 43.44 -101.57 REMARK 500 1 ASP A 95 150.50 174.56 REMARK 500 1 SER A 98 -29.39 -39.53 REMARK 500 1 LEU A 110 -105.93 -86.62 REMARK 500 1 SER A 116 111.38 62.14 REMARK 500 2 SER A 3 107.93 -172.34 REMARK 500 2 SER A 5 -59.15 176.06 REMARK 500 2 LYS A 17 157.18 -45.27 REMARK 500 2 MET A 21 -60.79 68.89 REMARK 500 2 LYS A 22 161.38 -43.23 REMARK 500 2 HIS A 36 86.39 40.38 REMARK 500 2 ASP A 54 100.64 -58.32 REMARK 500 2 ALA A 60 163.17 167.62 REMARK 500 2 THR A 73 -58.59 -140.10 REMARK 500 2 ALA A 78 -46.35 -153.84 REMARK 500 2 LEU A 110 -106.61 -84.70 REMARK 500 2 SER A 116 108.77 58.75 REMARK 500 3 SER A 6 -52.16 -166.85 REMARK 500 3 ARG A 8 130.74 70.01 REMARK 500 3 SER A 9 -161.57 -118.79 REMARK 500 3 ALA A 19 -175.56 58.90 REMARK 500 3 MET A 21 -69.05 76.92 REMARK 500 3 ALA A 60 165.35 163.46 REMARK 500 3 ALA A 70 156.47 -49.67 REMARK 500 3 ARG A 86 -75.98 -74.81 REMARK 500 3 LEU A 110 -78.37 -33.79 REMARK 500 3 SER A 112 154.28 59.24 REMARK 500 3 SER A 115 90.52 43.82 REMARK 500 3 SER A 116 -57.99 -134.42 REMARK 500 4 SER A 5 169.57 58.35 REMARK 500 4 MET A 21 -58.98 69.10 REMARK 500 4 LYS A 22 160.75 -41.03 REMARK 500 4 PRO A 23 -162.46 -75.03 REMARK 500 4 HIS A 36 88.41 40.72 REMARK 500 4 ALA A 60 169.39 166.94 REMARK 500 4 LYS A 72 47.81 -88.28 REMARK 500 4 THR A 73 -51.53 -136.71 REMARK 500 4 LYS A 77 51.72 -91.31 REMARK 500 4 ALA A 78 -50.98 -148.78 REMARK 500 4 LEU A 110 -106.98 -96.17 REMARK 500 5 SER A 5 -58.63 -161.14 REMARK 500 5 ARG A 8 126.64 -170.02 REMARK 500 REMARK 500 THIS ENTRY HAS 304 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: MMT007020503.1 RELATED DB: TARGETDB DBREF 1V5U A 8 111 GB 26344980 BAC36139 242 345 SEQADV 1V5U GLY A 1 GB 26344980 CLONING ARTIFACT SEQADV 1V5U SER A 2 GB 26344980 CLONING ARTIFACT SEQADV 1V5U SER A 3 GB 26344980 CLONING ARTIFACT SEQADV 1V5U GLY A 4 GB 26344980 CLONING ARTIFACT SEQADV 1V5U SER A 5 GB 26344980 CLONING ARTIFACT SEQADV 1V5U SER A 6 GB 26344980 CLONING ARTIFACT SEQADV 1V5U GLY A 7 GB 26344980 CLONING ARTIFACT SEQADV 1V5U SER A 112 GB 26344980 CLONING ARTIFACT SEQADV 1V5U GLY A 113 GB 26344980 CLONING ARTIFACT SEQADV 1V5U PRO A 114 GB 26344980 CLONING ARTIFACT SEQADV 1V5U SER A 115 GB 26344980 CLONING ARTIFACT SEQADV 1V5U SER A 116 GB 26344980 CLONING ARTIFACT SEQADV 1V5U GLY A 117 GB 26344980 CLONING ARTIFACT SEQRES 1 A 117 GLY SER SER GLY SER SER GLY ARG SER TYR GLU GLY ILE SEQRES 2 A 117 LEU TYR LYS LYS GLY ALA PHE MET LYS PRO TRP LYS ALA SEQRES 3 A 117 ARG TRP PHE VAL LEU ASP LYS THR LYS HIS GLN LEU ARG SEQRES 4 A 117 TYR TYR ASP HIS ARG MET ASP THR GLU CYS LYS GLY VAL SEQRES 5 A 117 ILE ASP LEU ALA GLU VAL GLU ALA VAL ALA PRO GLY THR SEQRES 6 A 117 PRO THR ILE GLY ALA PRO LYS THR VAL ASP GLU LYS ALA SEQRES 7 A 117 PHE PHE ASP VAL LYS THR THR ARG ARG VAL TYR ASN PHE SEQRES 8 A 117 CYS ALA GLN ASP VAL PRO SER ALA GLN GLN TRP VAL ASP SEQRES 9 A 117 ARG ILE GLN SER CYS LEU SER SER GLY PRO SER SER GLY HELIX 1 1 VAL A 96 SER A 108 1 13 SHEET 1 A 7 VAL A 52 ASP A 54 0 SHEET 2 A 7 GLN A 37 TYR A 41 -1 N LEU A 38 O ILE A 53 SHEET 3 A 7 LYS A 25 ASP A 32 -1 N TRP A 28 O TYR A 41 SHEET 4 A 7 TYR A 10 LYS A 16 -1 N LEU A 14 O ARG A 27 SHEET 5 A 7 ARG A 87 CYS A 92 -1 O CYS A 92 N TYR A 15 SHEET 6 A 7 PHE A 80 THR A 84 -1 N VAL A 82 O TYR A 89 SHEET 7 A 7 VAL A 58 ALA A 62 -1 N ALA A 62 O ASP A 81 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1