HEADER PROTEIN BINDING 27-NOV-03 1V62 TITLE SOLUTION STRUCTURE OF THE 3RD PDZ DOMAIN OF GRIP2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: KIAA1719 PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: PDZ DOMAIN; COMPND 5 SYNONYM: GLUTAMATE RECEPTOR INTERACTING PROTEIN 2; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: KAZUSA CDNA PF00330S1; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P030203-11; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS STRUCTURAL GENOMICS, SYNAPTIC TRANSMISSION, RIKEN STRUCTURAL KEYWDS 2 GENOMICS/PROTEOMICS INITIATIVE, RSGI, PROTEIN BINDING EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR K.SAITO,S.KOSHIBA,M.INOUE,T.KIGAWA,S.YOKOYAMA,RIKEN STRUCTURAL AUTHOR 2 GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 4 27-DEC-23 1V62 1 REMARK REVDAT 3 02-MAR-22 1V62 1 REMARK SEQADV REVDAT 2 24-FEB-09 1V62 1 VERSN REVDAT 1 27-MAY-04 1V62 0 JRNL AUTH K.SAITO,S.KOSHIBA,M.INOUE,T.KIGAWA,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE 3RD PDZ DOMAIN OF GRIP2 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE REMARK 3 -KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU,READ,RICE, REMARK 3 SIMONSON,WARREN REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1V62 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 28-NOV-03. REMARK 100 THE DEPOSITION ID IS D_1000006251. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : 220MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1MM PDZ DOMAIN U-15N,13C; 20MM REMARK 210 SODIUM PHOSPHATE BUFFER PH 6.0; REMARK 210 200MM NACL; 1MM D-DTT; 0.02% REMARK 210 NAN3; 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 2.6, NMRPIPE 20020425, REMARK 210 NMRVIEW 5, CNS 1.1 REMARK 210 METHOD USED : NULL REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 3 -179.47 60.32 REMARK 500 1 SER A 5 78.40 60.35 REMARK 500 1 VAL A 10 105.53 62.73 REMARK 500 1 SER A 14 -48.92 -134.57 REMARK 500 1 VAL A 22 86.59 -69.99 REMARK 500 1 LEU A 38 -75.68 -154.18 REMARK 500 1 ARG A 39 -57.98 -153.41 REMARK 500 1 MET A 75 37.58 -97.71 REMARK 500 1 GLU A 92 -59.13 -143.21 REMARK 500 1 PRO A 100 91.51 -50.27 REMARK 500 1 SER A 116 -48.23 -161.41 REMARK 500 2 SER A 14 92.61 -174.89 REMARK 500 2 VAL A 22 85.14 -68.71 REMARK 500 2 ARG A 39 -49.97 -154.40 REMARK 500 2 ASN A 40 30.07 -146.09 REMARK 500 2 LYS A 41 134.10 -171.74 REMARK 500 2 MET A 75 36.55 -98.41 REMARK 500 2 SER A 91 -75.14 -85.23 REMARK 500 2 PRO A 100 95.54 -52.62 REMARK 500 2 SER A 104 -79.96 -118.53 REMARK 500 2 LEU A 108 140.04 63.66 REMARK 500 2 ARG A 109 159.63 59.99 REMARK 500 2 PRO A 110 -174.45 -52.90 REMARK 500 2 SER A 111 30.94 -142.05 REMARK 500 2 SER A 112 169.77 59.51 REMARK 500 3 SER A 3 130.02 -173.52 REMARK 500 3 SER A 5 -65.86 69.24 REMARK 500 3 ALA A 13 30.85 -143.30 REMARK 500 3 VAL A 22 85.91 -61.26 REMARK 500 3 LEU A 38 -62.59 -148.46 REMARK 500 3 ARG A 39 -44.85 -162.42 REMARK 500 3 ASN A 40 30.93 -154.50 REMARK 500 3 LYS A 41 -169.42 -162.28 REMARK 500 3 MET A 75 30.96 -98.23 REMARK 500 3 GLU A 92 -48.41 -159.20 REMARK 500 3 PRO A 100 99.75 -49.48 REMARK 500 3 GLN A 105 31.63 -158.50 REMARK 500 3 LEU A 108 -69.82 -152.94 REMARK 500 3 PRO A 110 63.31 -69.61 REMARK 500 3 SER A 111 33.41 -143.34 REMARK 500 3 SER A 115 -47.43 -139.87 REMARK 500 3 SER A 116 33.52 -98.90 REMARK 500 4 SER A 3 -45.01 -162.84 REMARK 500 4 THR A 9 31.91 -154.64 REMARK 500 4 ASN A 12 31.57 -152.04 REMARK 500 4 PRO A 16 174.27 -53.15 REMARK 500 4 LEU A 38 -65.24 -147.22 REMARK 500 4 ARG A 39 -51.46 -152.38 REMARK 500 4 ASN A 40 29.13 -148.16 REMARK 500 4 PRO A 63 108.75 -53.67 REMARK 500 REMARK 500 THIS ENTRY HAS 310 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSK002101691.1 RELATED DB: TARGETDB DBREF 1V62 A 8 111 UNP Q9C0E4 GRIP2_HUMAN 245 348 SEQADV 1V62 GLY A 1 UNP Q9C0E4 CLONING ARTIFACT SEQADV 1V62 SER A 2 UNP Q9C0E4 CLONING ARTIFACT SEQADV 1V62 SER A 3 UNP Q9C0E4 CLONING ARTIFACT SEQADV 1V62 GLY A 4 UNP Q9C0E4 CLONING ARTIFACT SEQADV 1V62 SER A 5 UNP Q9C0E4 CLONING ARTIFACT SEQADV 1V62 SER A 6 UNP Q9C0E4 CLONING ARTIFACT SEQADV 1V62 GLY A 7 UNP Q9C0E4 CLONING ARTIFACT SEQADV 1V62 SER A 112 UNP Q9C0E4 CLONING ARTIFACT SEQADV 1V62 GLY A 113 UNP Q9C0E4 CLONING ARTIFACT SEQADV 1V62 PRO A 114 UNP Q9C0E4 CLONING ARTIFACT SEQADV 1V62 SER A 115 UNP Q9C0E4 CLONING ARTIFACT SEQADV 1V62 SER A 116 UNP Q9C0E4 CLONING ARTIFACT SEQADV 1V62 GLY A 117 UNP Q9C0E4 CLONING ARTIFACT SEQRES 1 A 117 GLY SER SER GLY SER SER GLY ASP THR VAL ALA ASN ALA SEQRES 2 A 117 SER GLY PRO LEU MET VAL GLU ILE VAL LYS THR PRO GLY SEQRES 3 A 117 SER ALA LEU GLY ILE SER LEU THR THR THR SER LEU ARG SEQRES 4 A 117 ASN LYS SER VAL ILE THR ILE ASP ARG ILE LYS PRO ALA SEQRES 5 A 117 SER VAL VAL ASP ARG SER GLY ALA LEU HIS PRO GLY ASP SEQRES 6 A 117 HIS ILE LEU SER ILE ASP GLY THR SER MET GLU HIS CYS SEQRES 7 A 117 SER LEU LEU GLU ALA THR LYS LEU LEU ALA SER ILE SER SEQRES 8 A 117 GLU LYS VAL ARG LEU GLU ILE LEU PRO VAL PRO GLN SER SEQRES 9 A 117 GLN ARG PRO LEU ARG PRO SER SER GLY PRO SER SER GLY HELIX 1 1 SER A 53 GLY A 59 1 7 HELIX 2 2 SER A 79 SER A 89 1 11 SHEET 1 A 4 LEU A 17 VAL A 22 0 SHEET 2 A 4 LYS A 93 ILE A 98 -1 O LEU A 96 N VAL A 19 SHEET 3 A 4 ILE A 67 ILE A 70 -1 N SER A 69 O GLU A 97 SHEET 4 A 4 THR A 73 SER A 74 -1 O THR A 73 N ILE A 70 SHEET 1 B 2 SER A 32 THR A 36 0 SHEET 2 B 2 VAL A 43 ARG A 48 -1 O THR A 45 N THR A 34 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1