data_1VAQ # _entry.id 1VAQ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.383 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1VAQ pdb_00001vaq 10.2210/pdb1vaq/pdb NDB DD0063 ? ? RCSB RCSB006410 ? ? WWPDB D_1000006410 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2004-06-22 2 'Structure model' 1 1 2008-04-27 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 2 0 2018-10-31 5 'Structure model' 3 0 2020-07-29 6 'Structure model' 3 1 2023-12-27 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 5 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' Advisory 4 4 'Structure model' 'Atomic model' 5 4 'Structure model' 'Data collection' 6 4 'Structure model' 'Derived calculations' 7 4 'Structure model' 'Source and taxonomy' 8 5 'Structure model' 'Atomic model' 9 5 'Structure model' 'Data collection' 10 5 'Structure model' 'Derived calculations' 11 5 'Structure model' 'Structure summary' 12 6 'Structure model' 'Data collection' 13 6 'Structure model' 'Database references' 14 6 'Structure model' 'Derived calculations' 15 6 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' atom_site 2 4 'Structure model' ndb_struct_na_base_pair 3 4 'Structure model' ndb_struct_na_base_pair_step 4 4 'Structure model' pdbx_distant_solvent_atoms 5 4 'Structure model' pdbx_entity_src_syn 6 4 'Structure model' pdbx_unobs_or_zero_occ_atoms 7 4 'Structure model' struct_conn 8 5 'Structure model' atom_site 9 5 'Structure model' chem_comp 10 5 'Structure model' entity 11 5 'Structure model' pdbx_branch_scheme 12 5 'Structure model' pdbx_chem_comp_identifier 13 5 'Structure model' pdbx_entity_branch 14 5 'Structure model' pdbx_entity_branch_descriptor 15 5 'Structure model' pdbx_entity_branch_link 16 5 'Structure model' pdbx_entity_branch_list 17 5 'Structure model' pdbx_entity_nonpoly 18 5 'Structure model' pdbx_nonpoly_scheme 19 5 'Structure model' pdbx_struct_assembly_gen 20 5 'Structure model' pdbx_struct_conn_angle 21 5 'Structure model' pdbx_struct_special_symmetry 22 5 'Structure model' struct_asym 23 5 'Structure model' struct_conn 24 5 'Structure model' struct_site 25 5 'Structure model' struct_site_gen 26 6 'Structure model' chem_comp 27 6 'Structure model' chem_comp_atom 28 6 'Structure model' chem_comp_bond 29 6 'Structure model' database_2 30 6 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_atom_site.B_iso_or_equiv' 2 4 'Structure model' '_atom_site.Cartn_x' 3 4 'Structure model' '_atom_site.Cartn_y' 4 4 'Structure model' '_atom_site.Cartn_z' 5 4 'Structure model' '_atom_site.auth_atom_id' 6 4 'Structure model' '_atom_site.label_atom_id' 7 4 'Structure model' '_atom_site.type_symbol' 8 4 'Structure model' '_ndb_struct_na_base_pair.buckle' 9 4 'Structure model' '_ndb_struct_na_base_pair_step.helical_twist' 10 4 'Structure model' '_ndb_struct_na_base_pair_step.inclination' 11 4 'Structure model' '_pdbx_entity_src_syn.ncbi_taxonomy_id' 12 4 'Structure model' '_pdbx_entity_src_syn.organism_scientific' 13 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 14 5 'Structure model' '_atom_site.B_iso_or_equiv' 15 5 'Structure model' '_atom_site.Cartn_x' 16 5 'Structure model' '_atom_site.Cartn_y' 17 5 'Structure model' '_atom_site.Cartn_z' 18 5 'Structure model' '_atom_site.auth_asym_id' 19 5 'Structure model' '_atom_site.auth_atom_id' 20 5 'Structure model' '_atom_site.auth_comp_id' 21 5 'Structure model' '_atom_site.auth_seq_id' 22 5 'Structure model' '_atom_site.label_asym_id' 23 5 'Structure model' '_atom_site.label_atom_id' 24 5 'Structure model' '_atom_site.label_comp_id' 25 5 'Structure model' '_atom_site.label_entity_id' 26 5 'Structure model' '_atom_site.type_symbol' 27 5 'Structure model' '_chem_comp.mon_nstd_flag' 28 5 'Structure model' '_chem_comp.name' 29 5 'Structure model' '_chem_comp.type' 30 5 'Structure model' '_pdbx_struct_assembly_gen.asym_id_list' 31 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_asym_id' 32 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 33 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 34 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 35 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 36 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 37 5 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 38 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_asym_id' 39 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 40 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 41 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 42 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 43 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 44 5 'Structure model' '_pdbx_struct_conn_angle.value' 45 5 'Structure model' '_pdbx_struct_special_symmetry.label_asym_id' 46 5 'Structure model' '_struct_conn.pdbx_dist_value' 47 5 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 48 5 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 49 5 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 50 5 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 51 5 'Structure model' '_struct_conn.ptnr1_label_asym_id' 52 5 'Structure model' '_struct_conn.ptnr1_label_atom_id' 53 5 'Structure model' '_struct_conn.ptnr1_label_comp_id' 54 5 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 55 5 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 56 5 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 57 5 'Structure model' '_struct_conn.ptnr2_label_asym_id' 58 5 'Structure model' '_struct_conn.ptnr2_label_atom_id' 59 5 'Structure model' '_struct_conn.ptnr2_label_comp_id' 60 6 'Structure model' '_chem_comp.pdbx_synonyms' 61 6 'Structure model' '_database_2.pdbx_DOI' 62 6 'Structure model' '_database_2.pdbx_database_accession' 63 6 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1VAQ _pdbx_database_status.recvd_initial_deposition_date 2004-02-19 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf REL _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Hou, M.H.' 1 'Robinson, H.' 2 'Gao, Y.G.' 3 'Wang, A.H.-J.' 4 # _citation.id primary _citation.title ;Crystal structure of the [Mg2+-(chromomycin A3)2]-d(TTGGCCAA)2 complex reveals GGCC binding specificity of the drug dimer chelated by a metal ion ; _citation.journal_abbrev 'Nucleic Acids Res.' _citation.journal_volume 32 _citation.page_first 2214 _citation.page_last 2222 _citation.year 2004 _citation.journal_id_ASTM NARHAD _citation.country UK _citation.journal_id_ISSN 0305-1048 _citation.journal_id_CSD 0389 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 15107489 _citation.pdbx_database_id_DOI 10.1093/nar/gkh549 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Hou, M.H.' 1 ? primary 'Robinson, H.' 2 ? primary 'Gao, Y.G.' 3 ? primary 'Wang, A.H.-J.' 4 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "5'-D(*TP*TP*GP*GP*CP*CP*AP*A)-3'" 2426.617 4 ? ? ? ? 2 branched man '2,6-dideoxy-4-O-methyl-alpha-D-galactopyranose-(1-3)-(2R,3R,6R)-6-hydroxy-2-methyltetrahydro-2H-pyran-3-yl acetate' 318.363 4 ? ? ? ? 3 branched man ;3-C-methyl-4-O-acetyl-alpha-L-Olivopyranose-(1-3)-(2R,5S,6R)-6-methyltetrahydro-2H-pyran-2,5-diol-(1-3)-(2R,5S,6R)-6-methyltetrahydro-2H-pyran-2,5-diol ; 432.506 4 ? ? ? ? 4 non-polymer syn 'MAGNESIUM ION' 24.305 2 ? ? ? ? 5 non-polymer syn '(1S)-5-deoxy-1-O-methyl-1-C-[(2R,3S)-3,5,7,10-tetrahydroxy-6-methyl-4-oxo-1,2,3,4-tetrahydroanthracen-2-yl]-D-xylulose' 420.410 4 ? ? ? ? 6 water nat water 18.015 283 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code '(DT)(DT)(DG)(DG)(DC)(DC)(DA)(DA)' _entity_poly.pdbx_seq_one_letter_code_can TTGGCCAA _entity_poly.pdbx_strand_id A,B,C,D _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 4 'MAGNESIUM ION' MG 5 '(1S)-5-deoxy-1-O-methyl-1-C-[(2R,3S)-3,5,7,10-tetrahydroxy-6-methyl-4-oxo-1,2,3,4-tetrahydroanthracen-2-yl]-D-xylulose' CPH 6 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DT n 1 2 DT n 1 3 DG n 1 4 DG n 1 5 DC n 1 6 DC n 1 7 DA n 1 8 DA n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details 'The synthetic DNA oligonucleotides were purified by gel electrophoresis.' # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 2 oligosaccharide 3 oligosaccharide # loop_ _pdbx_entity_branch_descriptor.ordinal _pdbx_entity_branch_descriptor.entity_id _pdbx_entity_branch_descriptor.descriptor _pdbx_entity_branch_descriptor.type _pdbx_entity_branch_descriptor.program _pdbx_entity_branch_descriptor.program_version 1 2 'WURCS=2.0/2,2,1/[ad212m-1b_1-5_4*OCC/3=O][ad112m-1a_1-5_4*OC]/1-2/a3-b1' WURCS PDB2Glycan 1.1.0 2 2 '[][b-D-2-deoxy-Fucp4Ac]{[(3+1)][a-D-2-deoxy-Fucp4Me]{}}' LINUCS PDB-CARE ? 3 3 'WURCS=2.0/2,3,2/[ad222m-1b_1-5][ad611m-1a_1-5_3*C_4*OCC/3=O]/1-1-2/a3-b1_b3-c1' WURCS PDB2Glycan 1.1.0 4 3 '[][b-D-2,6-deoxy-Glcp]{[(3+1)][b-D-2,6-deoxy-Glcp]{[(3+1)][a-L-2,6-deoxy-Glcp4Ac]{}}}' LINUCS PDB-CARE ? # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.value_order _pdbx_entity_branch_link.details 1 2 1 ARI C3 H3 2 1GL O1 HO1 sing ? 2 3 1 CDR C3 H3 2 CDR O1 HO1 sing ? 3 3 2 CDR C3 H3 3 ERI O1 HO1 sing ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 1GL 'D-saccharide, alpha linking' . 2,6-dideoxy-4-O-methyl-alpha-D-galactopyranose ;4-O-METHYL-2,6-DIDEOXY-ALPHA-D-GALACTO-HEXOPYRANOSE; 2-deoxy-4-O-methyl-alpha-D-fucopyranose; 2,6-dideoxy-4-O-methyl-alpha-D-galactose; 2,6-dideoxy-4-O-methyl-D-galactose; 2,6-dideoxy-4-O-methyl-galactose ; 'C7 H14 O4' 162.184 ARI 'D-saccharide, beta linking' . '(2R,3R,6R)-6-hydroxy-2-methyltetrahydro-2H-pyran-3-yl acetate' '[O4]-ACETOXY-2,3-DIDEOXYFUCOSE' 'C8 H14 O4' 174.194 CDR 'D-saccharide, beta linking' . '(2R,5S,6R)-6-methyltetrahydro-2H-pyran-2,5-diol' 2,3-DIDEOXYFUCOSE 'C6 H12 O3' 132.158 CPH non-polymer . '(1S)-5-deoxy-1-O-methyl-1-C-[(2R,3S)-3,5,7,10-tetrahydroxy-6-methyl-4-oxo-1,2,3,4-tetrahydroanthracen-2-yl]-D-xylulose' None 'C21 H24 O9' 420.410 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 ERI 'L-saccharide, alpha linking' n 3-C-methyl-4-O-acetyl-alpha-L-Olivopyranose ;4-O-ACETYL-2,6-DIDEOXY-3-C-METHYL-BETA-L-ARABINO-HEXOPYRANOSE; 3-C-methyl-4-O-acetyl-alpha-L-Olivose; 3-C-methyl-4-O-acetyl-L-Olivose; 3-C-methyl-4-O-acetyl-Olivose ; 'C9 H16 O5' 204.220 HOH non-polymer . WATER ? 'H2 O' 18.015 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 # _pdbx_chem_comp_identifier.comp_id 1GL _pdbx_chem_comp_identifier.type 'IUPAC CARBOHYDRATE SYMBOL' _pdbx_chem_comp_identifier.program PDB-CARE _pdbx_chem_comp_identifier.program_version 1.0 _pdbx_chem_comp_identifier.identifier a-D-2-deoxy-Fucp4OMe # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DT 1 1 1 DT THY A . n A 1 2 DT 2 2 2 DT THY A . n A 1 3 DG 3 3 3 DG GUA A . n A 1 4 DG 4 4 4 DG GUA A . n A 1 5 DC 5 5 5 DC CYT A . n A 1 6 DC 6 6 6 DC CYT A . n A 1 7 DA 7 7 7 DA ADE A . n A 1 8 DA 8 8 8 DA ADE A . n B 1 1 DT 1 9 9 DT THY B . n B 1 2 DT 2 10 10 DT THY B . n B 1 3 DG 3 11 11 DG GUA B . n B 1 4 DG 4 12 12 DG GUA B . n B 1 5 DC 5 13 13 DC CYT B . n B 1 6 DC 6 14 14 DC CYT B . n B 1 7 DA 7 15 15 DA ADE B . n B 1 8 DA 8 16 16 DA ADE B . n C 1 1 DT 1 41 41 DT THY C . n C 1 2 DT 2 42 42 DT THY C . n C 1 3 DG 3 43 43 DG GUA C . n C 1 4 DG 4 44 44 DG GUA C . n C 1 5 DC 5 45 45 DC CYT C . n C 1 6 DC 6 46 46 DC CYT C . n C 1 7 DA 7 47 47 DA ADE C . n C 1 8 DA 8 48 48 DA ADE C . n D 1 1 DT 1 49 49 DT THY D . n D 1 2 DT 2 50 50 DT THY D . n D 1 3 DG 3 51 51 DG GUA D . n D 1 4 DG 4 52 52 DG GUA D . n D 1 5 DC 5 53 53 DC CYT D . n D 1 6 DC 6 54 54 DC CYT D . n D 1 7 DA 7 55 55 DA ADE D . n D 1 8 DA 8 56 56 DA ADE D . n # loop_ _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_mon_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.hetero E 2 ARI 1 E ARI 1 ? ARI 32 n E 2 1GL 2 E 1GL 2 ? BRI 31 n F 2 ARI 1 F ARI 1 ? ARI 22 n F 2 1GL 2 F 1GL 2 ? BRI 21 n G 3 CDR 1 G CDR 1 ? CDR 24 n G 3 CDR 2 G CDR 2 ? CDR 25 n G 3 ERI 3 G ERI 3 ? ERI 26 n H 3 CDR 1 H CDR 1 ? CDR 34 n H 3 CDR 2 H CDR 2 ? CDR 35 n H 3 ERI 3 H ERI 3 ? ERI 36 n I 2 ARI 1 I ARI 1 ? ARI 72 n I 2 1GL 2 I 1GL 2 ? BRI 71 n J 3 CDR 1 J CDR 1 ? CDR 74 n J 3 CDR 2 J CDR 2 ? CDR 75 n J 3 ERI 3 J ERI 3 ? ERI 76 n K 2 ARI 1 K ARI 1 ? ARI 62 n K 2 1GL 2 K 1GL 2 ? BRI 61 n L 3 CDR 1 L CDR 1 ? CDR 64 n L 3 CDR 2 L CDR 2 ? CDR 65 n L 3 ERI 3 L ERI 3 ? ERI 66 n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code M 4 MG 1 81 81 MG MGW A . N 5 CPH 1 33 33 CPH CPH A . O 5 CPH 1 23 23 CPH CPH B . P 5 CPH 1 73 73 CPH CPH C . Q 4 MG 1 82 82 MG MGW D . R 5 CPH 1 63 63 CPH CPH D . S 6 HOH 1 204 204 HOH TIP A . S 6 HOH 2 238 238 HOH TIP A . S 6 HOH 3 239 239 HOH TIP A . S 6 HOH 4 240 240 HOH TIP A . S 6 HOH 5 242 242 HOH TIP A . S 6 HOH 6 243 243 HOH TIP A . S 6 HOH 7 260 260 HOH TIP A . S 6 HOH 8 261 261 HOH TIP A . S 6 HOH 9 264 264 HOH TIP A . S 6 HOH 10 268 268 HOH TIP A . S 6 HOH 11 270 270 HOH TIP A . S 6 HOH 12 280 280 HOH TIP A . S 6 HOH 13 286 286 HOH TIP A . S 6 HOH 14 304 304 HOH TIP A . S 6 HOH 15 317 317 HOH TIP A . S 6 HOH 16 318 318 HOH TIP A . S 6 HOH 17 322 322 HOH TIP A . S 6 HOH 18 343 343 HOH TIP A . S 6 HOH 19 375 375 HOH TIP A . S 6 HOH 20 379 379 HOH TIP A . S 6 HOH 21 390 390 HOH TIP A . S 6 HOH 22 397 397 HOH TIP A . S 6 HOH 23 405 405 HOH TIP A . S 6 HOH 24 407 407 HOH TIP A . S 6 HOH 25 409 409 HOH TIP A . S 6 HOH 26 416 416 HOH TIP A . S 6 HOH 27 417 417 HOH TIP A . S 6 HOH 28 418 418 HOH TIP A . S 6 HOH 29 423 423 HOH TIP A . S 6 HOH 30 439 439 HOH TIP A . S 6 HOH 31 440 440 HOH TIP A . S 6 HOH 32 441 441 HOH TIP A . S 6 HOH 33 481 81 HOH MGW A . T 6 HOH 1 205 205 HOH TIP B . T 6 HOH 2 206 206 HOH TIP B . T 6 HOH 3 207 207 HOH TIP B . T 6 HOH 4 208 208 HOH TIP B . T 6 HOH 5 209 209 HOH TIP B . T 6 HOH 6 210 210 HOH TIP B . T 6 HOH 7 213 213 HOH TIP B . T 6 HOH 8 214 214 HOH TIP B . T 6 HOH 9 215 215 HOH TIP B . T 6 HOH 10 217 217 HOH TIP B . T 6 HOH 11 218 218 HOH TIP B . T 6 HOH 12 233 233 HOH TIP B . T 6 HOH 13 234 234 HOH TIP B . T 6 HOH 14 235 235 HOH TIP B . T 6 HOH 15 236 236 HOH TIP B . T 6 HOH 16 237 237 HOH TIP B . T 6 HOH 17 248 248 HOH TIP B . T 6 HOH 18 249 249 HOH TIP B . T 6 HOH 19 251 251 HOH TIP B . T 6 HOH 20 252 252 HOH TIP B . T 6 HOH 21 253 253 HOH TIP B . T 6 HOH 22 263 263 HOH TIP B . T 6 HOH 23 265 265 HOH TIP B . T 6 HOH 24 284 284 HOH TIP B . T 6 HOH 25 287 287 HOH TIP B . T 6 HOH 26 288 288 HOH TIP B . T 6 HOH 27 312 312 HOH TIP B . T 6 HOH 28 313 313 HOH TIP B . T 6 HOH 29 314 314 HOH TIP B . T 6 HOH 30 316 316 HOH TIP B . T 6 HOH 31 319 319 HOH TIP B . T 6 HOH 32 344 344 HOH TIP B . T 6 HOH 33 345 345 HOH TIP B . T 6 HOH 34 346 346 HOH TIP B . T 6 HOH 35 347 347 HOH TIP B . T 6 HOH 36 348 348 HOH TIP B . T 6 HOH 37 349 349 HOH TIP B . T 6 HOH 38 350 350 HOH TIP B . T 6 HOH 39 351 351 HOH TIP B . T 6 HOH 40 359 359 HOH TIP B . T 6 HOH 41 360 360 HOH TIP B . T 6 HOH 42 361 361 HOH TIP B . T 6 HOH 43 362 362 HOH TIP B . T 6 HOH 44 363 363 HOH TIP B . T 6 HOH 45 364 364 HOH TIP B . T 6 HOH 46 365 365 HOH TIP B . T 6 HOH 47 366 366 HOH TIP B . T 6 HOH 48 367 367 HOH TIP B . T 6 HOH 49 368 368 HOH TIP B . T 6 HOH 50 369 369 HOH TIP B . T 6 HOH 51 370 370 HOH TIP B . T 6 HOH 52 371 371 HOH TIP B . T 6 HOH 53 372 372 HOH TIP B . T 6 HOH 54 374 374 HOH TIP B . T 6 HOH 55 376 376 HOH TIP B . T 6 HOH 56 377 377 HOH TIP B . T 6 HOH 57 378 378 HOH TIP B . T 6 HOH 58 380 380 HOH TIP B . T 6 HOH 59 381 381 HOH TIP B . T 6 HOH 60 382 382 HOH TIP B . T 6 HOH 61 383 383 HOH TIP B . T 6 HOH 62 384 384 HOH TIP B . T 6 HOH 63 385 385 HOH TIP B . T 6 HOH 64 386 386 HOH TIP B . T 6 HOH 65 387 387 HOH TIP B . T 6 HOH 66 388 388 HOH TIP B . T 6 HOH 67 389 389 HOH TIP B . T 6 HOH 68 391 391 HOH TIP B . T 6 HOH 69 392 392 HOH TIP B . T 6 HOH 70 394 394 HOH TIP B . T 6 HOH 71 395 395 HOH TIP B . T 6 HOH 72 396 396 HOH TIP B . T 6 HOH 73 404 404 HOH TIP B . T 6 HOH 74 408 408 HOH TIP B . T 6 HOH 75 410 410 HOH TIP B . T 6 HOH 76 411 411 HOH TIP B . T 6 HOH 77 412 412 HOH TIP B . T 6 HOH 78 413 413 HOH TIP B . T 6 HOH 79 415 415 HOH TIP B . T 6 HOH 80 421 421 HOH TIP B . T 6 HOH 81 422 422 HOH TIP B . T 6 HOH 82 424 424 HOH TIP B . T 6 HOH 83 431 431 HOH TIP B . T 6 HOH 84 432 432 HOH TIP B . T 6 HOH 85 433 433 HOH TIP B . T 6 HOH 86 435 435 HOH TIP B . T 6 HOH 87 436 436 HOH TIP B . T 6 HOH 88 437 437 HOH TIP B . T 6 HOH 89 438 438 HOH TIP B . T 6 HOH 90 442 442 HOH TIP B . T 6 HOH 91 453 453 HOH TIP B . T 6 HOH 92 456 456 HOH TIP B . T 6 HOH 93 457 457 HOH TIP B . T 6 HOH 94 458 458 HOH TIP B . T 6 HOH 95 459 459 HOH TIP B . T 6 HOH 96 460 460 HOH TIP B . T 6 HOH 97 463 463 HOH TIP B . T 6 HOH 98 467 467 HOH TIP B . T 6 HOH 99 476 476 HOH TIP B . T 6 HOH 100 480 81 HOH MGW B . U 6 HOH 1 203 203 HOH TIP C . U 6 HOH 2 212 212 HOH TIP C . U 6 HOH 3 216 216 HOH TIP C . U 6 HOH 4 219 219 HOH TIP C . U 6 HOH 5 222 222 HOH TIP C . U 6 HOH 6 223 223 HOH TIP C . U 6 HOH 7 224 224 HOH TIP C . U 6 HOH 8 225 225 HOH TIP C . U 6 HOH 9 226 226 HOH TIP C . U 6 HOH 10 227 227 HOH TIP C . U 6 HOH 11 228 228 HOH TIP C . U 6 HOH 12 229 229 HOH TIP C . U 6 HOH 13 230 230 HOH TIP C . U 6 HOH 14 231 231 HOH TIP C . U 6 HOH 15 232 232 HOH TIP C . U 6 HOH 16 241 241 HOH TIP C . U 6 HOH 17 246 246 HOH TIP C . U 6 HOH 18 247 247 HOH TIP C . U 6 HOH 19 250 250 HOH TIP C . U 6 HOH 20 254 254 HOH TIP C . U 6 HOH 21 255 255 HOH TIP C . U 6 HOH 22 259 259 HOH TIP C . U 6 HOH 23 262 262 HOH TIP C . U 6 HOH 24 267 267 HOH TIP C . U 6 HOH 25 269 269 HOH TIP C . U 6 HOH 26 271 271 HOH TIP C . U 6 HOH 27 272 272 HOH TIP C . U 6 HOH 28 273 273 HOH TIP C . U 6 HOH 29 274 274 HOH TIP C . U 6 HOH 30 285 285 HOH TIP C . U 6 HOH 31 289 289 HOH TIP C . U 6 HOH 32 290 290 HOH TIP C . U 6 HOH 33 291 291 HOH TIP C . U 6 HOH 34 292 292 HOH TIP C . U 6 HOH 35 293 293 HOH TIP C . U 6 HOH 36 294 294 HOH TIP C . U 6 HOH 37 295 295 HOH TIP C . U 6 HOH 38 296 296 HOH TIP C . U 6 HOH 39 298 298 HOH TIP C . U 6 HOH 40 299 299 HOH TIP C . U 6 HOH 41 302 302 HOH TIP C . U 6 HOH 42 303 303 HOH TIP C . U 6 HOH 43 305 305 HOH TIP C . U 6 HOH 44 306 306 HOH TIP C . U 6 HOH 45 325 325 HOH TIP C . U 6 HOH 46 326 326 HOH TIP C . U 6 HOH 47 327 327 HOH TIP C . U 6 HOH 48 328 328 HOH TIP C . U 6 HOH 49 329 329 HOH TIP C . U 6 HOH 50 331 331 HOH TIP C . U 6 HOH 51 352 352 HOH TIP C . U 6 HOH 52 353 353 HOH TIP C . U 6 HOH 53 357 357 HOH TIP C . U 6 HOH 54 358 358 HOH TIP C . U 6 HOH 55 373 373 HOH TIP C . U 6 HOH 56 402 402 HOH TIP C . U 6 HOH 57 403 403 HOH TIP C . U 6 HOH 58 414 414 HOH TIP C . U 6 HOH 59 420 420 HOH TIP C . U 6 HOH 60 426 426 HOH TIP C . U 6 HOH 61 427 427 HOH TIP C . U 6 HOH 62 428 428 HOH TIP C . U 6 HOH 63 429 429 HOH TIP C . U 6 HOH 64 430 430 HOH TIP C . U 6 HOH 65 434 434 HOH TIP C . U 6 HOH 66 443 443 HOH TIP C . U 6 HOH 67 444 444 HOH TIP C . U 6 HOH 68 445 445 HOH TIP C . U 6 HOH 69 446 446 HOH TIP C . U 6 HOH 70 450 450 HOH TIP C . U 6 HOH 71 454 454 HOH TIP C . U 6 HOH 72 455 455 HOH TIP C . U 6 HOH 73 461 461 HOH TIP C . U 6 HOH 74 462 462 HOH TIP C . U 6 HOH 75 470 470 HOH TIP C . U 6 HOH 76 474 474 HOH TIP C . U 6 HOH 77 475 475 HOH TIP C . U 6 HOH 78 479 479 HOH TIP C . V 6 HOH 1 201 201 HOH TIP D . V 6 HOH 2 202 202 HOH TIP D . V 6 HOH 3 211 211 HOH TIP D . V 6 HOH 4 220 220 HOH TIP D . V 6 HOH 5 221 221 HOH TIP D . V 6 HOH 6 244 244 HOH TIP D . V 6 HOH 7 245 245 HOH TIP D . V 6 HOH 8 256 256 HOH TIP D . V 6 HOH 9 257 257 HOH TIP D . V 6 HOH 10 258 258 HOH TIP D . V 6 HOH 11 266 266 HOH TIP D . V 6 HOH 12 275 275 HOH TIP D . V 6 HOH 13 276 276 HOH TIP D . V 6 HOH 14 277 277 HOH TIP D . V 6 HOH 15 278 278 HOH TIP D . V 6 HOH 16 279 279 HOH TIP D . V 6 HOH 17 281 281 HOH TIP D . V 6 HOH 18 282 282 HOH TIP D . V 6 HOH 19 283 283 HOH TIP D . V 6 HOH 20 297 297 HOH TIP D . V 6 HOH 21 300 300 HOH TIP D . V 6 HOH 22 301 301 HOH TIP D . V 6 HOH 23 307 307 HOH TIP D . V 6 HOH 24 308 308 HOH TIP D . V 6 HOH 25 309 309 HOH TIP D . V 6 HOH 26 310 310 HOH TIP D . V 6 HOH 27 311 311 HOH TIP D . V 6 HOH 28 315 315 HOH TIP D . V 6 HOH 29 320 320 HOH TIP D . V 6 HOH 30 321 321 HOH TIP D . V 6 HOH 31 323 323 HOH TIP D . V 6 HOH 32 324 324 HOH TIP D . V 6 HOH 33 330 330 HOH TIP D . V 6 HOH 34 332 332 HOH TIP D . V 6 HOH 35 333 333 HOH TIP D . V 6 HOH 36 334 334 HOH TIP D . V 6 HOH 37 335 335 HOH TIP D . V 6 HOH 38 336 336 HOH TIP D . V 6 HOH 39 337 337 HOH TIP D . V 6 HOH 40 338 338 HOH TIP D . V 6 HOH 41 339 339 HOH TIP D . V 6 HOH 42 340 340 HOH TIP D . V 6 HOH 43 341 341 HOH TIP D . V 6 HOH 44 342 342 HOH TIP D . V 6 HOH 45 354 354 HOH TIP D . V 6 HOH 46 355 355 HOH TIP D . V 6 HOH 47 356 356 HOH TIP D . V 6 HOH 48 393 393 HOH TIP D . V 6 HOH 49 398 398 HOH TIP D . V 6 HOH 50 399 399 HOH TIP D . V 6 HOH 51 400 400 HOH TIP D . V 6 HOH 52 401 401 HOH TIP D . V 6 HOH 53 406 406 HOH TIP D . V 6 HOH 54 419 419 HOH TIP D . V 6 HOH 55 425 425 HOH TIP D . V 6 HOH 56 447 447 HOH TIP D . V 6 HOH 57 448 448 HOH TIP D . V 6 HOH 58 449 449 HOH TIP D . V 6 HOH 59 451 451 HOH TIP D . V 6 HOH 60 452 452 HOH TIP D . V 6 HOH 61 464 464 HOH TIP D . V 6 HOH 62 465 465 HOH TIP D . V 6 HOH 63 466 466 HOH TIP D . V 6 HOH 64 468 468 HOH TIP D . V 6 HOH 65 469 469 HOH TIP D . V 6 HOH 66 471 471 HOH TIP D . V 6 HOH 67 472 472 HOH TIP D . V 6 HOH 68 473 473 HOH TIP D . V 6 HOH 69 477 477 HOH TIP D . V 6 HOH 70 478 478 HOH TIP D . V 6 HOH 71 482 82 HOH MGW D . V 6 HOH 72 483 82 HOH MGW D . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal DENZO 'data reduction' . ? 1 SCALEPACK 'data scaling' . ? 2 SOLVE phasing . ? 3 CNS refinement . ? 4 # _cell.entry_id 1VAQ _cell.length_a 42.23 _cell.length_b 42.23 _cell.length_c 246.11 _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.pdbx_unique_axis ? _cell.Z_PDB 48 # _symmetry.entry_id 1VAQ _symmetry.space_group_name_H-M 'P 65 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.Int_Tables_number 179 _symmetry.cell_setting ? # _exptl.entry_id 1VAQ _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 1.79 _exptl_crystal.density_percent_sol 30.91 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 5 _exptl_crystal_grow.pdbx_details 'sodium-cacodylate, MgCl2, pH 5, VAPOR DIFFUSION, HANGING DROP, temperature 298K' _exptl_crystal_grow.pdbx_pH_range . # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 sodium-cacodylate ? ? ? 1 2 1 MgCl2 ? ? ? 1 3 2 sodium-cacodylate ? ? ? 1 4 2 MgCl2 ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 110 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type RIGAKU _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator GRAPHITE _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5432 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 19-ID' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 19-ID _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.5432 # _reflns.entry_id 1VAQ _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.d_resolution_high 2.0 _reflns.d_resolution_low 50 _reflns.number_all 7815 _reflns.number_obs ? _reflns.percent_possible_obs ? _reflns.pdbx_Rmerge_I_obs 0.0055 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 6 _reflns.R_free_details ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _refine.entry_id 1VAQ _refine.ls_d_res_high 2.0 _refine.ls_d_res_low 50 _refine.pdbx_ls_sigma_F 10 _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all 7815 _refine.ls_number_reflns_obs 7815 _refine.ls_number_reflns_R_free 726 _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.235 _refine.ls_R_factor_R_work 0.235 _refine.ls_R_factor_R_free 0.278 _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_starting_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model Isotropic _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.details ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_SU_B ? _refine.overall_SU_ML ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 644 _refine_hist.pdbx_number_atoms_ligand 338 _refine_hist.number_atoms_solvent 279 _refine_hist.number_atoms_total 1261 _refine_hist.d_res_high 2.0 _refine_hist.d_res_low 50 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_angle_deg 2.2 ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d 0.022 ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used ? _refine_ls_shell.d_res_high 2.0 _refine_ls_shell.d_res_low 2.07 _refine_ls_shell.number_reflns_R_work ? _refine_ls_shell.R_factor_R_work 0.235 _refine_ls_shell.percent_reflns_obs ? _refine_ls_shell.R_factor_R_free 0.278 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 735 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # _database_PDB_matrix.entry_id 1VAQ _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1VAQ _struct.title ;Crystal structure of the Mg2+-(chromomycin A3)2-d(TTGGCCAA)2 complex reveals GGCC binding specificity of the drug dimer chelated by metal ion ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1VAQ _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'Chromomycin A3, MAD, DNA duplex, GGCC site, DNA kink, CD spectra, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? E N N 2 ? F N N 2 ? G N N 3 ? H N N 3 ? I N N 2 ? J N N 3 ? K N N 2 ? L N N 3 ? M N N 4 ? N N N 5 ? O N N 5 ? P N N 5 ? Q N N 4 ? R N N 5 ? S N N 6 ? T N N 6 ? U N N 6 ? V N N 6 ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 1VAQ _struct_ref.pdbx_db_accession 1VAQ _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1VAQ A 1 ? 8 ? 1VAQ 1 ? 8 ? 1 8 2 1 1VAQ B 1 ? 8 ? 1VAQ 9 ? 16 ? 9 16 3 1 1VAQ C 1 ? 8 ? 1VAQ 41 ? 48 ? 41 48 4 1 1VAQ D 1 ? 8 ? 1VAQ 49 ? 56 ? 49 56 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? dimeric 2 2 author_defined_assembly ? dimeric 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,E,F,G,H,M,N,O,S,T 2 1 C,D,I,J,K,L,P,Q,R,U,V # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale one ? N CPH . C6 ? ? ? 1_555 E ARI . O1 ? ? A CPH 33 E ARI 1 1_555 ? ? ? ? ? ? ? 1.381 ? ? covale2 covale one ? N CPH . C2 ? ? ? 1_555 H CDR . O1 ? ? A CPH 33 H CDR 1 1_555 ? ? ? ? ? ? ? 1.389 ? ? covale3 covale one ? O CPH . C6 ? ? ? 1_555 F ARI . O1 ? ? B CPH 23 F ARI 1 1_555 ? ? ? ? ? ? ? 1.380 ? ? covale4 covale one ? O CPH . C2 ? ? ? 1_555 G CDR . O1 ? ? B CPH 23 G CDR 1 1_555 ? ? ? ? ? ? ? 1.377 ? ? covale5 covale one ? P CPH . C6 ? ? ? 1_555 I ARI . O1 ? ? C CPH 73 I ARI 1 1_555 ? ? ? ? ? ? ? 1.371 ? ? covale6 covale one ? P CPH . C2 ? ? ? 1_555 J CDR . O1 ? ? C CPH 73 J CDR 1 1_555 ? ? ? ? ? ? ? 1.394 ? ? covale7 covale one ? R CPH . C6 ? ? ? 1_555 K ARI . O1 ? ? D CPH 63 K ARI 1 1_555 ? ? ? ? ? ? ? 1.382 ? ? covale8 covale one ? R CPH . C2 ? ? ? 1_555 L CDR . O1 ? ? D CPH 63 L CDR 1 1_555 ? ? ? ? ? ? ? 1.379 ? ? covale9 covale one ? E ARI . C3 ? ? ? 1_555 E 1GL . O1 ? ? E ARI 1 E 1GL 2 1_555 ? ? ? ? ? ? ? 1.384 ? ? covale10 covale one ? F ARI . C3 ? ? ? 1_555 F 1GL . O1 ? ? F ARI 1 F 1GL 2 1_555 ? ? ? ? ? ? ? 1.394 ? ? covale11 covale one ? G CDR . C3 ? ? ? 1_555 G CDR . O1 ? ? G CDR 1 G CDR 2 1_555 ? ? ? ? ? ? ? 1.388 ? ? covale12 covale one ? G CDR . C3 ? ? ? 1_555 G ERI . O1 ? ? G CDR 2 G ERI 3 1_555 ? ? ? ? ? ? ? 1.387 ? ? covale13 covale one ? H CDR . C3 ? ? ? 1_555 H CDR . O1 ? ? H CDR 1 H CDR 2 1_555 ? ? ? ? ? ? ? 1.393 ? ? covale14 covale one ? H CDR . C3 ? ? ? 1_555 H ERI . O1 ? ? H CDR 2 H ERI 3 1_555 ? ? ? ? ? ? ? 1.391 ? ? covale15 covale one ? I ARI . C3 ? ? ? 1_555 I 1GL . O1 ? ? I ARI 1 I 1GL 2 1_555 ? ? ? ? ? ? ? 1.390 ? ? covale16 covale one ? J CDR . C3 ? ? ? 1_555 J CDR . O1 ? ? J CDR 1 J CDR 2 1_555 ? ? ? ? ? ? ? 1.391 ? ? covale17 covale one ? J CDR . C3 ? ? ? 1_555 J ERI . O1 ? ? J CDR 2 J ERI 3 1_555 ? ? ? ? ? ? ? 1.383 ? ? covale18 covale one ? K ARI . C3 ? ? ? 1_555 K 1GL . O1 ? ? K ARI 1 K 1GL 2 1_555 ? ? ? ? ? ? ? 1.401 ? ? covale19 covale one ? L CDR . C3 ? ? ? 1_555 L CDR . O1 ? ? L CDR 1 L CDR 2 1_555 ? ? ? ? ? ? ? 1.401 ? ? covale20 covale one ? L CDR . C3 ? ? ? 1_555 L ERI . O1 ? ? L CDR 2 L ERI 3 1_555 ? ? ? ? ? ? ? 1.368 ? ? metalc1 metalc ? ? N CPH . O1 ? ? ? 1_555 M MG . MG ? ? A CPH 33 A MG 81 1_555 ? ? ? ? ? ? ? 2.035 ? ? metalc2 metalc ? ? N CPH . O9 ? ? ? 1_555 M MG . MG ? ? A CPH 33 A MG 81 1_555 ? ? ? ? ? ? ? 1.865 ? ? metalc3 metalc ? ? M MG . MG ? ? ? 1_555 S HOH . O ? ? A MG 81 A HOH 481 1_555 ? ? ? ? ? ? ? 2.056 ? ? metalc4 metalc ? ? M MG . MG ? ? ? 1_555 O CPH . O1 ? ? A MG 81 B CPH 23 1_555 ? ? ? ? ? ? ? 1.999 ? ? metalc5 metalc ? ? M MG . MG ? ? ? 1_555 O CPH . O9 ? ? A MG 81 B CPH 23 1_555 ? ? ? ? ? ? ? 1.807 ? ? metalc6 metalc ? ? M MG . MG ? ? ? 1_555 T HOH . O ? ? A MG 81 B HOH 480 1_555 ? ? ? ? ? ? ? 2.073 ? ? metalc7 metalc ? ? P CPH . O1 ? ? ? 1_555 Q MG . MG ? ? C CPH 73 D MG 82 1_555 ? ? ? ? ? ? ? 2.065 ? ? metalc8 metalc ? ? P CPH . O9 ? ? ? 1_555 Q MG . MG ? ? C CPH 73 D MG 82 1_555 ? ? ? ? ? ? ? 1.877 ? ? metalc9 metalc ? ? R CPH . O9 ? ? ? 1_555 Q MG . MG ? ? D CPH 63 D MG 82 1_555 ? ? ? ? ? ? ? 1.837 ? ? metalc10 metalc ? ? R CPH . O1 ? ? ? 1_555 Q MG . MG ? ? D CPH 63 D MG 82 1_555 ? ? ? ? ? ? ? 2.110 ? ? metalc11 metalc ? ? Q MG . MG ? ? ? 1_555 V HOH . O ? ? D MG 82 D HOH 482 1_555 ? ? ? ? ? ? ? 2.069 ? ? metalc12 metalc ? ? Q MG . MG ? ? ? 1_555 V HOH . O ? ? D MG 82 D HOH 483 1_555 ? ? ? ? ? ? ? 2.008 ? ? hydrog1 hydrog ? ? A DT 1 N3 ? ? ? 1_555 B DA 8 N1 ? ? A DT 1 B DA 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DT 1 O4 ? ? ? 1_555 B DA 8 N6 ? ? A DT 1 B DA 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DT 2 N3 ? ? ? 1_555 B DA 7 N1 ? ? A DT 2 B DA 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DT 2 O4 ? ? ? 1_555 B DA 7 N6 ? ? A DT 2 B DA 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DG 3 N1 ? ? ? 1_555 B DC 6 N3 ? ? A DG 3 B DC 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DG 3 N2 ? ? ? 1_555 B DC 6 O2 ? ? A DG 3 B DC 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DG 3 O6 ? ? ? 1_555 B DC 6 N4 ? ? A DG 3 B DC 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DG 4 N1 ? ? ? 1_555 B DC 5 N3 ? ? A DG 4 B DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DG 4 N2 ? ? ? 1_555 B DC 5 O2 ? ? A DG 4 B DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DG 4 O6 ? ? ? 1_555 B DC 5 N4 ? ? A DG 4 B DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DC 5 N3 ? ? ? 1_555 B DG 4 N1 ? ? A DC 5 B DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DC 5 N4 ? ? ? 1_555 B DG 4 O6 ? ? A DC 5 B DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DC 5 O2 ? ? ? 1_555 B DG 4 N2 ? ? A DC 5 B DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DC 6 N3 ? ? ? 1_555 B DG 3 N1 ? ? A DC 6 B DG 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DC 6 N4 ? ? ? 1_555 B DG 3 O6 ? ? A DC 6 B DG 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DC 6 O2 ? ? ? 1_555 B DG 3 N2 ? ? A DC 6 B DG 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DA 7 N1 ? ? ? 1_555 B DT 2 N3 ? ? A DA 7 B DT 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DA 7 N6 ? ? ? 1_555 B DT 2 O4 ? ? A DA 7 B DT 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DA 8 N1 ? ? ? 1_555 B DT 1 N3 ? ? A DA 8 B DT 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DA 8 N6 ? ? ? 1_555 B DT 1 O4 ? ? A DA 8 B DT 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? C DT 1 N3 ? ? ? 1_555 D DA 8 N1 ? ? C DT 41 D DA 56 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? C DT 1 O4 ? ? ? 1_555 D DA 8 N6 ? ? C DT 41 D DA 56 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? C DT 2 N3 ? ? ? 1_555 D DA 7 N1 ? ? C DT 42 D DA 55 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? C DT 2 O4 ? ? ? 1_555 D DA 7 N6 ? ? C DT 42 D DA 55 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? C DG 3 N1 ? ? ? 1_555 D DC 6 N3 ? ? C DG 43 D DC 54 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? C DG 3 N2 ? ? ? 1_555 D DC 6 O2 ? ? C DG 43 D DC 54 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? C DG 3 O6 ? ? ? 1_555 D DC 6 N4 ? ? C DG 43 D DC 54 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? C DG 4 N1 ? ? ? 1_555 D DC 5 N3 ? ? C DG 44 D DC 53 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? C DG 4 N2 ? ? ? 1_555 D DC 5 O2 ? ? C DG 44 D DC 53 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? C DG 4 O6 ? ? ? 1_555 D DC 5 N4 ? ? C DG 44 D DC 53 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? C DC 5 N3 ? ? ? 1_555 D DG 4 N1 ? ? C DC 45 D DG 52 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? C DC 5 N4 ? ? ? 1_555 D DG 4 O6 ? ? C DC 45 D DG 52 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? C DC 5 O2 ? ? ? 1_555 D DG 4 N2 ? ? C DC 45 D DG 52 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? C DC 6 N3 ? ? ? 1_555 D DG 3 N1 ? ? C DC 46 D DG 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? C DC 6 N4 ? ? ? 1_555 D DG 3 O6 ? ? C DC 46 D DG 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? C DC 6 O2 ? ? ? 1_555 D DG 3 N2 ? ? C DC 46 D DG 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? C DA 7 N1 ? ? ? 1_555 D DT 2 N3 ? ? C DA 47 D DT 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? C DA 7 N6 ? ? ? 1_555 D DT 2 O4 ? ? C DA 47 D DT 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? C DA 8 N1 ? ? ? 1_555 D DT 1 N3 ? ? C DA 48 D DT 49 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? C DA 8 N6 ? ? ? 1_555 D DT 1 O4 ? ? C DA 48 D DT 49 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O1 ? N CPH . ? A CPH 33 ? 1_555 MG ? M MG . ? A MG 81 ? 1_555 O9 ? N CPH . ? A CPH 33 ? 1_555 82.0 ? 2 O1 ? N CPH . ? A CPH 33 ? 1_555 MG ? M MG . ? A MG 81 ? 1_555 O ? S HOH . ? A HOH 481 ? 1_555 99.5 ? 3 O9 ? N CPH . ? A CPH 33 ? 1_555 MG ? M MG . ? A MG 81 ? 1_555 O ? S HOH . ? A HOH 481 ? 1_555 105.4 ? 4 O1 ? N CPH . ? A CPH 33 ? 1_555 MG ? M MG . ? A MG 81 ? 1_555 O1 ? O CPH . ? B CPH 23 ? 1_555 86.3 ? 5 O9 ? N CPH . ? A CPH 33 ? 1_555 MG ? M MG . ? A MG 81 ? 1_555 O1 ? O CPH . ? B CPH 23 ? 1_555 91.7 ? 6 O ? S HOH . ? A HOH 481 ? 1_555 MG ? M MG . ? A MG 81 ? 1_555 O1 ? O CPH . ? B CPH 23 ? 1_555 162.6 ? 7 O1 ? N CPH . ? A CPH 33 ? 1_555 MG ? M MG . ? A MG 81 ? 1_555 O9 ? O CPH . ? B CPH 23 ? 1_555 98.6 ? 8 O9 ? N CPH . ? A CPH 33 ? 1_555 MG ? M MG . ? A MG 81 ? 1_555 O9 ? O CPH . ? B CPH 23 ? 1_555 172.9 ? 9 O ? S HOH . ? A HOH 481 ? 1_555 MG ? M MG . ? A MG 81 ? 1_555 O9 ? O CPH . ? B CPH 23 ? 1_555 81.6 ? 10 O1 ? O CPH . ? B CPH 23 ? 1_555 MG ? M MG . ? A MG 81 ? 1_555 O9 ? O CPH . ? B CPH 23 ? 1_555 81.3 ? 11 O1 ? N CPH . ? A CPH 33 ? 1_555 MG ? M MG . ? A MG 81 ? 1_555 O ? T HOH . ? B HOH 480 ? 1_555 167.5 ? 12 O9 ? N CPH . ? A CPH 33 ? 1_555 MG ? M MG . ? A MG 81 ? 1_555 O ? T HOH . ? B HOH 480 ? 1_555 87.9 ? 13 O ? S HOH . ? A HOH 481 ? 1_555 MG ? M MG . ? A MG 81 ? 1_555 O ? T HOH . ? B HOH 480 ? 1_555 90.2 ? 14 O1 ? O CPH . ? B CPH 23 ? 1_555 MG ? M MG . ? A MG 81 ? 1_555 O ? T HOH . ? B HOH 480 ? 1_555 86.7 ? 15 O9 ? O CPH . ? B CPH 23 ? 1_555 MG ? M MG . ? A MG 81 ? 1_555 O ? T HOH . ? B HOH 480 ? 1_555 90.5 ? 16 O1 ? P CPH . ? C CPH 73 ? 1_555 MG ? Q MG . ? D MG 82 ? 1_555 O9 ? P CPH . ? C CPH 73 ? 1_555 80.9 ? 17 O1 ? P CPH . ? C CPH 73 ? 1_555 MG ? Q MG . ? D MG 82 ? 1_555 O9 ? R CPH . ? D CPH 63 ? 1_555 93.1 ? 18 O9 ? P CPH . ? C CPH 73 ? 1_555 MG ? Q MG . ? D MG 82 ? 1_555 O9 ? R CPH . ? D CPH 63 ? 1_555 169.2 ? 19 O1 ? P CPH . ? C CPH 73 ? 1_555 MG ? Q MG . ? D MG 82 ? 1_555 O1 ? R CPH . ? D CPH 63 ? 1_555 91.1 ? 20 O9 ? P CPH . ? C CPH 73 ? 1_555 MG ? Q MG . ? D MG 82 ? 1_555 O1 ? R CPH . ? D CPH 63 ? 1_555 105.6 ? 21 O9 ? R CPH . ? D CPH 63 ? 1_555 MG ? Q MG . ? D MG 82 ? 1_555 O1 ? R CPH . ? D CPH 63 ? 1_555 83.3 ? 22 O1 ? P CPH . ? C CPH 73 ? 1_555 MG ? Q MG . ? D MG 82 ? 1_555 O ? V HOH . ? D HOH 482 ? 1_555 82.5 ? 23 O9 ? P CPH . ? C CPH 73 ? 1_555 MG ? Q MG . ? D MG 82 ? 1_555 O ? V HOH . ? D HOH 482 ? 1_555 84.8 ? 24 O9 ? R CPH . ? D CPH 63 ? 1_555 MG ? Q MG . ? D MG 82 ? 1_555 O ? V HOH . ? D HOH 482 ? 1_555 85.5 ? 25 O1 ? R CPH . ? D CPH 63 ? 1_555 MG ? Q MG . ? D MG 82 ? 1_555 O ? V HOH . ? D HOH 482 ? 1_555 166.8 ? 26 O1 ? P CPH . ? C CPH 73 ? 1_555 MG ? Q MG . ? D MG 82 ? 1_555 O ? V HOH . ? D HOH 483 ? 1_555 173.1 ? 27 O9 ? P CPH . ? C CPH 73 ? 1_555 MG ? Q MG . ? D MG 82 ? 1_555 O ? V HOH . ? D HOH 483 ? 1_555 93.5 ? 28 O9 ? R CPH . ? D CPH 63 ? 1_555 MG ? Q MG . ? D MG 82 ? 1_555 O ? V HOH . ? D HOH 483 ? 1_555 91.8 ? 29 O1 ? R CPH . ? D CPH 63 ? 1_555 MG ? Q MG . ? D MG 82 ? 1_555 O ? V HOH . ? D HOH 483 ? 1_555 94.2 ? 30 O ? V HOH . ? D HOH 482 ? 1_555 MG ? Q MG . ? D MG 82 ? 1_555 O ? V HOH . ? D HOH 483 ? 1_555 93.0 ? # _struct_site.id 1 _struct_site.pdbx_evidence_code ? _struct_site.pdbx_auth_asym_id ? _struct_site.pdbx_auth_comp_id ? _struct_site.pdbx_auth_seq_id ? _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues ? _struct_site.details ? # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 O _pdbx_validate_close_contact.auth_asym_id_1 B _pdbx_validate_close_contact.auth_comp_id_1 HOH _pdbx_validate_close_contact.auth_seq_id_1 422 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 C _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 250 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.17 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? N9 A DG 3 ? ? 110.31 108.30 2.01 0.30 N 2 1 "O4'" A DG 4 ? ? "C1'" A DG 4 ? ? N9 A DG 4 ? ? 110.31 108.30 2.01 0.30 N 3 1 "O4'" B DT 10 ? ? "C1'" B DT 10 ? ? N1 B DT 10 ? ? 110.38 108.30 2.08 0.30 N 4 1 "O4'" C DC 45 ? ? "C1'" C DC 45 ? ? N1 C DC 45 ? ? 112.33 108.30 4.03 0.30 N # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 DG A 3 ? ? 0.137 'SIDE CHAIN' 2 1 DG A 4 ? ? 0.106 'SIDE CHAIN' 3 1 DT B 10 ? ? 0.072 'SIDE CHAIN' 4 1 DG B 11 ? ? 0.113 'SIDE CHAIN' 5 1 DG B 12 ? ? 0.096 'SIDE CHAIN' 6 1 DG C 44 ? ? 0.057 'SIDE CHAIN' 7 1 DC C 45 ? ? 0.090 'SIDE CHAIN' 8 1 DG D 51 ? ? 0.099 'SIDE CHAIN' 9 1 DC D 53 ? ? 0.067 'SIDE CHAIN' # _struct_site_keywords.site_id 1 _struct_site_keywords.text 'outside binder' # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A HOH 268 ? S HOH . 2 1 A HOH 280 ? S HOH . 3 1 A HOH 409 ? S HOH . 4 1 B HOH 345 ? T HOH . # loop_ _pdbx_distant_solvent_atoms.id _pdbx_distant_solvent_atoms.PDB_model_num _pdbx_distant_solvent_atoms.auth_atom_id _pdbx_distant_solvent_atoms.label_alt_id _pdbx_distant_solvent_atoms.auth_asym_id _pdbx_distant_solvent_atoms.auth_comp_id _pdbx_distant_solvent_atoms.auth_seq_id _pdbx_distant_solvent_atoms.PDB_ins_code _pdbx_distant_solvent_atoms.neighbor_macromolecule_distance _pdbx_distant_solvent_atoms.neighbor_ligand_distance 1 1 O ? B HOH 237 ? 6.45 . 2 1 O ? B HOH 319 ? 6.64 . 3 1 O ? B HOH 362 ? 5.84 . 4 1 O ? B HOH 386 ? . 7.52 5 1 O ? B HOH 394 ? . 8.85 6 1 O ? B HOH 411 ? 7.44 . 7 1 O ? B HOH 413 ? 6.20 . 8 1 O ? B HOH 424 ? . 5.97 9 1 O ? B HOH 432 ? . 7.63 10 1 O ? B HOH 435 ? 7.38 . 11 1 O ? B HOH 438 ? 11.53 . 12 1 O ? B HOH 453 ? . 5.88 13 1 O ? C HOH 292 ? 6.09 . 14 1 O ? C HOH 352 ? 7.79 . 15 1 O ? C HOH 357 ? . 6.17 16 1 O ? C HOH 358 ? . 5.81 17 1 O ? C HOH 434 ? . 6.80 18 1 O ? C HOH 443 ? . 7.31 19 1 O ? C HOH 444 ? . 6.87 20 1 O ? D HOH 244 ? 8.11 . 21 1 O ? D HOH 245 ? 7.16 . 22 1 O ? D HOH 275 ? 5.87 . 23 1 O ? D HOH 276 ? 8.58 . 24 1 O ? D HOH 277 ? 10.07 . 25 1 O ? D HOH 278 ? 11.39 . 26 1 O ? D HOH 336 ? 6.80 . 27 1 O ? D HOH 339 ? 6.42 . 28 1 O ? D HOH 341 ? 5.82 . 29 1 O ? D HOH 342 ? 8.32 . 30 1 O ? D HOH 393 ? 7.26 . 31 1 O ? D HOH 399 ? 6.01 . 32 1 O ? D HOH 406 ? . 7.57 33 1 O ? D HOH 419 ? . 10.78 34 1 O ? D HOH 447 ? . 6.10 35 1 O ? D HOH 464 ? 10.14 . 36 1 O ? D HOH 465 ? 12.77 . 37 1 O ? D HOH 472 ? 6.73 . # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 1GL O1 O N N 1 1GL C1 C N S 2 1GL C2 C N N 3 1GL C3 C N R 4 1GL O3 O N N 5 1GL C4 C N R 6 1GL O4 O N N 7 1GL CME C N N 8 1GL C5 C N R 9 1GL O5 O N N 10 1GL C6 C N N 11 1GL HO1 H N N 12 1GL H1 H N N 13 1GL H2 H N N 14 1GL H22 H N N 15 1GL H3 H N N 16 1GL HO3 H N N 17 1GL H4 H N N 18 1GL HM41 H N N 19 1GL HM42 H N N 20 1GL HM43 H N N 21 1GL H5 H N N 22 1GL H61 H N N 23 1GL H62 H N N 24 1GL H63 H N N 25 ARI O1 O N N 26 ARI C1 C N R 27 ARI C2 C N N 28 ARI C3 C N N 29 ARI C4 C N R 30 ARI O4 O N N 31 ARI CME C N N 32 ARI CO4 C N N 33 ARI OC4 O N N 34 ARI C5 C N R 35 ARI O5 O N N 36 ARI C6 C N N 37 ARI HO1 H N N 38 ARI H1 H N N 39 ARI H2 H N N 40 ARI H22 H N N 41 ARI H3 H N N 42 ARI H32 H N N 43 ARI H4 H N N 44 ARI H41 H N N 45 ARI H42 H N N 46 ARI H43 H N N 47 ARI H5 H N N 48 ARI H61 H N N 49 ARI H62 H N N 50 ARI H63 H N N 51 CDR O1 O N N 52 CDR C1 C N R 53 CDR C2 C N N 54 CDR C3 C N N 55 CDR C4 C N S 56 CDR O4 O N N 57 CDR C5 C N R 58 CDR O5 O N N 59 CDR C6 C N N 60 CDR HO1 H N N 61 CDR H1 H N N 62 CDR H2 H N N 63 CDR H22 H N N 64 CDR H3 H N N 65 CDR H32 H N N 66 CDR H4 H N N 67 CDR HO4 H N N 68 CDR H5 H N N 69 CDR H61 H N N 70 CDR H62 H N N 71 CDR H63 H N N 72 CPH C1 C N N 73 CPH O1 O N N 74 CPH C2 C N S 75 CPH C3 C N R 76 CPH C4 C N N 77 CPH C5 C Y N 78 CPH C6 C Y N 79 CPH C7 C Y N 80 CPH C8 C Y N 81 CPH O8 O N N 82 CPH C9 C Y N 83 CPH O9 O N N 84 CPH "C1'" C N S 85 CPH "O1'" O N N 86 CPH C10 C Y N 87 CPH "C2'" C N N 88 CPH "O2'" O N N 89 CPH "C3'" C N S 90 CPH "O3'" O N N 91 CPH "C4'" C N R 92 CPH "O4'" O N N 93 CPH C4A C Y N 94 CPH "C5'" C N N 95 CPH C5A C Y N 96 CPH C8A C Y N 97 CPH C9A C Y N 98 CPH CC7 C N N 99 CPH O6 O N N 100 CPH O2 O N N 101 CPH CME C N N 102 CPH H2 H N N 103 CPH H3 H N N 104 CPH H4 H N N 105 CPH H4A H N N 106 CPH H5 H N N 107 CPH HO8 H N N 108 CPH HO9 H N N 109 CPH "H1'" H N N 110 CPH H10 H N N 111 CPH "H3'" H N N 112 CPH "HO3'" H N N 113 CPH "H4'" H N N 114 CPH "HO4'" H N N 115 CPH "H5'" H N N 116 CPH "H5'A" H N N 117 CPH "H5'B" H N N 118 CPH HC7 H N N 119 CPH HC7A H N N 120 CPH HC7B H N N 121 CPH HO6 H N N 122 CPH HO2 H N N 123 CPH HME H N N 124 CPH HMEA H N N 125 CPH HMEB H N N 126 DA OP3 O N N 127 DA P P N N 128 DA OP1 O N N 129 DA OP2 O N N 130 DA "O5'" O N N 131 DA "C5'" C N N 132 DA "C4'" C N R 133 DA "O4'" O N N 134 DA "C3'" C N S 135 DA "O3'" O N N 136 DA "C2'" C N N 137 DA "C1'" C N R 138 DA N9 N Y N 139 DA C8 C Y N 140 DA N7 N Y N 141 DA C5 C Y N 142 DA C6 C Y N 143 DA N6 N N N 144 DA N1 N Y N 145 DA C2 C Y N 146 DA N3 N Y N 147 DA C4 C Y N 148 DA HOP3 H N N 149 DA HOP2 H N N 150 DA "H5'" H N N 151 DA "H5''" H N N 152 DA "H4'" H N N 153 DA "H3'" H N N 154 DA "HO3'" H N N 155 DA "H2'" H N N 156 DA "H2''" H N N 157 DA "H1'" H N N 158 DA H8 H N N 159 DA H61 H N N 160 DA H62 H N N 161 DA H2 H N N 162 DC OP3 O N N 163 DC P P N N 164 DC OP1 O N N 165 DC OP2 O N N 166 DC "O5'" O N N 167 DC "C5'" C N N 168 DC "C4'" C N R 169 DC "O4'" O N N 170 DC "C3'" C N S 171 DC "O3'" O N N 172 DC "C2'" C N N 173 DC "C1'" C N R 174 DC N1 N N N 175 DC C2 C N N 176 DC O2 O N N 177 DC N3 N N N 178 DC C4 C N N 179 DC N4 N N N 180 DC C5 C N N 181 DC C6 C N N 182 DC HOP3 H N N 183 DC HOP2 H N N 184 DC "H5'" H N N 185 DC "H5''" H N N 186 DC "H4'" H N N 187 DC "H3'" H N N 188 DC "HO3'" H N N 189 DC "H2'" H N N 190 DC "H2''" H N N 191 DC "H1'" H N N 192 DC H41 H N N 193 DC H42 H N N 194 DC H5 H N N 195 DC H6 H N N 196 DG OP3 O N N 197 DG P P N N 198 DG OP1 O N N 199 DG OP2 O N N 200 DG "O5'" O N N 201 DG "C5'" C N N 202 DG "C4'" C N R 203 DG "O4'" O N N 204 DG "C3'" C N S 205 DG "O3'" O N N 206 DG "C2'" C N N 207 DG "C1'" C N R 208 DG N9 N Y N 209 DG C8 C Y N 210 DG N7 N Y N 211 DG C5 C Y N 212 DG C6 C N N 213 DG O6 O N N 214 DG N1 N N N 215 DG C2 C N N 216 DG N2 N N N 217 DG N3 N N N 218 DG C4 C Y N 219 DG HOP3 H N N 220 DG HOP2 H N N 221 DG "H5'" H N N 222 DG "H5''" H N N 223 DG "H4'" H N N 224 DG "H3'" H N N 225 DG "HO3'" H N N 226 DG "H2'" H N N 227 DG "H2''" H N N 228 DG "H1'" H N N 229 DG H8 H N N 230 DG H1 H N N 231 DG H21 H N N 232 DG H22 H N N 233 DT OP3 O N N 234 DT P P N N 235 DT OP1 O N N 236 DT OP2 O N N 237 DT "O5'" O N N 238 DT "C5'" C N N 239 DT "C4'" C N R 240 DT "O4'" O N N 241 DT "C3'" C N S 242 DT "O3'" O N N 243 DT "C2'" C N N 244 DT "C1'" C N R 245 DT N1 N N N 246 DT C2 C N N 247 DT O2 O N N 248 DT N3 N N N 249 DT C4 C N N 250 DT O4 O N N 251 DT C5 C N N 252 DT C7 C N N 253 DT C6 C N N 254 DT HOP3 H N N 255 DT HOP2 H N N 256 DT "H5'" H N N 257 DT "H5''" H N N 258 DT "H4'" H N N 259 DT "H3'" H N N 260 DT "HO3'" H N N 261 DT "H2'" H N N 262 DT "H2''" H N N 263 DT "H1'" H N N 264 DT H3 H N N 265 DT H71 H N N 266 DT H72 H N N 267 DT H73 H N N 268 DT H6 H N N 269 ERI O1 O N N 270 ERI C1 C N R 271 ERI C2 C N N 272 ERI C3 C N S 273 ERI O3 O N N 274 ERI CC3 C N N 275 ERI C4 C N S 276 ERI O4 O N N 277 ERI CME C N N 278 ERI CO4 C N N 279 ERI OC4 O N N 280 ERI C5 C N S 281 ERI O5 O N N 282 ERI C6 C N N 283 ERI HO1 H N N 284 ERI H1 H N N 285 ERI H21 H N N 286 ERI H22 H N N 287 ERI HO3 H N N 288 ERI H31 H N N 289 ERI H32 H N N 290 ERI H33 H N N 291 ERI H4 H N N 292 ERI H41 H N N 293 ERI H42 H N N 294 ERI H43 H N N 295 ERI H5 H N N 296 ERI H61 H N N 297 ERI H62 H N N 298 ERI H63 H N N 299 HOH O O N N 300 HOH H1 H N N 301 HOH H2 H N N 302 MG MG MG N N 303 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 1GL O1 C1 sing N N 1 1GL O1 HO1 sing N N 2 1GL C1 C2 sing N N 3 1GL C1 O5 sing N N 4 1GL C1 H1 sing N N 5 1GL C2 C3 sing N N 6 1GL C2 H2 sing N N 7 1GL C2 H22 sing N N 8 1GL C3 O3 sing N N 9 1GL C3 C4 sing N N 10 1GL C3 H3 sing N N 11 1GL O3 HO3 sing N N 12 1GL C4 O4 sing N N 13 1GL C4 C5 sing N N 14 1GL C4 H4 sing N N 15 1GL O4 CME sing N N 16 1GL CME HM41 sing N N 17 1GL CME HM42 sing N N 18 1GL CME HM43 sing N N 19 1GL C5 O5 sing N N 20 1GL C5 C6 sing N N 21 1GL C5 H5 sing N N 22 1GL C6 H61 sing N N 23 1GL C6 H62 sing N N 24 1GL C6 H63 sing N N 25 ARI O1 C1 sing N N 26 ARI O1 HO1 sing N N 27 ARI C1 C2 sing N N 28 ARI C1 O5 sing N N 29 ARI C1 H1 sing N N 30 ARI C2 C3 sing N N 31 ARI C2 H2 sing N N 32 ARI C2 H22 sing N N 33 ARI C3 C4 sing N N 34 ARI C3 H3 sing N N 35 ARI C3 H32 sing N N 36 ARI C4 O4 sing N N 37 ARI C4 C5 sing N N 38 ARI C4 H4 sing N N 39 ARI O4 CO4 sing N N 40 ARI CME CO4 sing N N 41 ARI CME H41 sing N N 42 ARI CME H42 sing N N 43 ARI CME H43 sing N N 44 ARI CO4 OC4 doub N N 45 ARI C5 O5 sing N N 46 ARI C5 C6 sing N N 47 ARI C5 H5 sing N N 48 ARI C6 H61 sing N N 49 ARI C6 H62 sing N N 50 ARI C6 H63 sing N N 51 CDR O1 C1 sing N N 52 CDR O1 HO1 sing N N 53 CDR C1 C2 sing N N 54 CDR C1 O5 sing N N 55 CDR C1 H1 sing N N 56 CDR C2 C3 sing N N 57 CDR C2 H2 sing N N 58 CDR C2 H22 sing N N 59 CDR C3 C4 sing N N 60 CDR C3 H3 sing N N 61 CDR C3 H32 sing N N 62 CDR C4 O4 sing N N 63 CDR C4 C5 sing N N 64 CDR C4 H4 sing N N 65 CDR O4 HO4 sing N N 66 CDR C5 O5 sing N N 67 CDR C5 C6 sing N N 68 CDR C5 H5 sing N N 69 CDR C6 H61 sing N N 70 CDR C6 H62 sing N N 71 CDR C6 H63 sing N N 72 CPH O1 C1 doub N N 73 CPH C9A C1 sing N N 74 CPH C1 C2 sing N N 75 CPH C2 O2 sing N N 76 CPH C2 C3 sing N N 77 CPH C2 H2 sing N N 78 CPH C3 C4 sing N N 79 CPH C3 "C1'" sing N N 80 CPH C3 H3 sing N N 81 CPH C4A C4 sing N N 82 CPH C4 H4 sing N N 83 CPH C4 H4A sing N N 84 CPH C6 C5 doub Y N 85 CPH C5 C5A sing Y N 86 CPH C5 H5 sing N N 87 CPH C7 C6 sing Y N 88 CPH O6 C6 sing N N 89 CPH CC7 C7 sing N N 90 CPH C7 C8 doub Y N 91 CPH O8 C8 sing N N 92 CPH C8 C8A sing Y N 93 CPH O8 HO8 sing N N 94 CPH O9 C9 sing N N 95 CPH C8A C9 doub Y N 96 CPH C9 C9A sing Y N 97 CPH O9 HO9 sing N N 98 CPH "C2'" "C1'" sing N N 99 CPH "C1'" "O1'" sing N N 100 CPH "C1'" "H1'" sing N N 101 CPH "O1'" CME sing N N 102 CPH C5A C10 doub Y N 103 CPH C10 C4A sing Y N 104 CPH C10 H10 sing N N 105 CPH "O2'" "C2'" doub N N 106 CPH "C2'" "C3'" sing N N 107 CPH "O3'" "C3'" sing N N 108 CPH "C3'" "C4'" sing N N 109 CPH "C3'" "H3'" sing N N 110 CPH "O3'" "HO3'" sing N N 111 CPH "O4'" "C4'" sing N N 112 CPH "C4'" "C5'" sing N N 113 CPH "C4'" "H4'" sing N N 114 CPH "O4'" "HO4'" sing N N 115 CPH C9A C4A doub Y N 116 CPH "C5'" "H5'" sing N N 117 CPH "C5'" "H5'A" sing N N 118 CPH "C5'" "H5'B" sing N N 119 CPH C8A C5A sing Y N 120 CPH CC7 HC7 sing N N 121 CPH CC7 HC7A sing N N 122 CPH CC7 HC7B sing N N 123 CPH O6 HO6 sing N N 124 CPH O2 HO2 sing N N 125 CPH CME HME sing N N 126 CPH CME HMEA sing N N 127 CPH CME HMEB sing N N 128 DA OP3 P sing N N 129 DA OP3 HOP3 sing N N 130 DA P OP1 doub N N 131 DA P OP2 sing N N 132 DA P "O5'" sing N N 133 DA OP2 HOP2 sing N N 134 DA "O5'" "C5'" sing N N 135 DA "C5'" "C4'" sing N N 136 DA "C5'" "H5'" sing N N 137 DA "C5'" "H5''" sing N N 138 DA "C4'" "O4'" sing N N 139 DA "C4'" "C3'" sing N N 140 DA "C4'" "H4'" sing N N 141 DA "O4'" "C1'" sing N N 142 DA "C3'" "O3'" sing N N 143 DA "C3'" "C2'" sing N N 144 DA "C3'" "H3'" sing N N 145 DA "O3'" "HO3'" sing N N 146 DA "C2'" "C1'" sing N N 147 DA "C2'" "H2'" sing N N 148 DA "C2'" "H2''" sing N N 149 DA "C1'" N9 sing N N 150 DA "C1'" "H1'" sing N N 151 DA N9 C8 sing Y N 152 DA N9 C4 sing Y N 153 DA C8 N7 doub Y N 154 DA C8 H8 sing N N 155 DA N7 C5 sing Y N 156 DA C5 C6 sing Y N 157 DA C5 C4 doub Y N 158 DA C6 N6 sing N N 159 DA C6 N1 doub Y N 160 DA N6 H61 sing N N 161 DA N6 H62 sing N N 162 DA N1 C2 sing Y N 163 DA C2 N3 doub Y N 164 DA C2 H2 sing N N 165 DA N3 C4 sing Y N 166 DC OP3 P sing N N 167 DC OP3 HOP3 sing N N 168 DC P OP1 doub N N 169 DC P OP2 sing N N 170 DC P "O5'" sing N N 171 DC OP2 HOP2 sing N N 172 DC "O5'" "C5'" sing N N 173 DC "C5'" "C4'" sing N N 174 DC "C5'" "H5'" sing N N 175 DC "C5'" "H5''" sing N N 176 DC "C4'" "O4'" sing N N 177 DC "C4'" "C3'" sing N N 178 DC "C4'" "H4'" sing N N 179 DC "O4'" "C1'" sing N N 180 DC "C3'" "O3'" sing N N 181 DC "C3'" "C2'" sing N N 182 DC "C3'" "H3'" sing N N 183 DC "O3'" "HO3'" sing N N 184 DC "C2'" "C1'" sing N N 185 DC "C2'" "H2'" sing N N 186 DC "C2'" "H2''" sing N N 187 DC "C1'" N1 sing N N 188 DC "C1'" "H1'" sing N N 189 DC N1 C2 sing N N 190 DC N1 C6 sing N N 191 DC C2 O2 doub N N 192 DC C2 N3 sing N N 193 DC N3 C4 doub N N 194 DC C4 N4 sing N N 195 DC C4 C5 sing N N 196 DC N4 H41 sing N N 197 DC N4 H42 sing N N 198 DC C5 C6 doub N N 199 DC C5 H5 sing N N 200 DC C6 H6 sing N N 201 DG OP3 P sing N N 202 DG OP3 HOP3 sing N N 203 DG P OP1 doub N N 204 DG P OP2 sing N N 205 DG P "O5'" sing N N 206 DG OP2 HOP2 sing N N 207 DG "O5'" "C5'" sing N N 208 DG "C5'" "C4'" sing N N 209 DG "C5'" "H5'" sing N N 210 DG "C5'" "H5''" sing N N 211 DG "C4'" "O4'" sing N N 212 DG "C4'" "C3'" sing N N 213 DG "C4'" "H4'" sing N N 214 DG "O4'" "C1'" sing N N 215 DG "C3'" "O3'" sing N N 216 DG "C3'" "C2'" sing N N 217 DG "C3'" "H3'" sing N N 218 DG "O3'" "HO3'" sing N N 219 DG "C2'" "C1'" sing N N 220 DG "C2'" "H2'" sing N N 221 DG "C2'" "H2''" sing N N 222 DG "C1'" N9 sing N N 223 DG "C1'" "H1'" sing N N 224 DG N9 C8 sing Y N 225 DG N9 C4 sing Y N 226 DG C8 N7 doub Y N 227 DG C8 H8 sing N N 228 DG N7 C5 sing Y N 229 DG C5 C6 sing N N 230 DG C5 C4 doub Y N 231 DG C6 O6 doub N N 232 DG C6 N1 sing N N 233 DG N1 C2 sing N N 234 DG N1 H1 sing N N 235 DG C2 N2 sing N N 236 DG C2 N3 doub N N 237 DG N2 H21 sing N N 238 DG N2 H22 sing N N 239 DG N3 C4 sing N N 240 DT OP3 P sing N N 241 DT OP3 HOP3 sing N N 242 DT P OP1 doub N N 243 DT P OP2 sing N N 244 DT P "O5'" sing N N 245 DT OP2 HOP2 sing N N 246 DT "O5'" "C5'" sing N N 247 DT "C5'" "C4'" sing N N 248 DT "C5'" "H5'" sing N N 249 DT "C5'" "H5''" sing N N 250 DT "C4'" "O4'" sing N N 251 DT "C4'" "C3'" sing N N 252 DT "C4'" "H4'" sing N N 253 DT "O4'" "C1'" sing N N 254 DT "C3'" "O3'" sing N N 255 DT "C3'" "C2'" sing N N 256 DT "C3'" "H3'" sing N N 257 DT "O3'" "HO3'" sing N N 258 DT "C2'" "C1'" sing N N 259 DT "C2'" "H2'" sing N N 260 DT "C2'" "H2''" sing N N 261 DT "C1'" N1 sing N N 262 DT "C1'" "H1'" sing N N 263 DT N1 C2 sing N N 264 DT N1 C6 sing N N 265 DT C2 O2 doub N N 266 DT C2 N3 sing N N 267 DT N3 C4 sing N N 268 DT N3 H3 sing N N 269 DT C4 O4 doub N N 270 DT C4 C5 sing N N 271 DT C5 C7 sing N N 272 DT C5 C6 doub N N 273 DT C7 H71 sing N N 274 DT C7 H72 sing N N 275 DT C7 H73 sing N N 276 DT C6 H6 sing N N 277 ERI O1 C1 sing N N 278 ERI O1 HO1 sing N N 279 ERI C1 C2 sing N N 280 ERI C1 O5 sing N N 281 ERI C1 H1 sing N N 282 ERI C2 C3 sing N N 283 ERI C2 H21 sing N N 284 ERI C2 H22 sing N N 285 ERI C3 O3 sing N N 286 ERI C3 CC3 sing N N 287 ERI C3 C4 sing N N 288 ERI O3 HO3 sing N N 289 ERI CC3 H31 sing N N 290 ERI CC3 H32 sing N N 291 ERI CC3 H33 sing N N 292 ERI C4 O4 sing N N 293 ERI C4 C5 sing N N 294 ERI C4 H4 sing N N 295 ERI O4 CO4 sing N N 296 ERI CME CO4 sing N N 297 ERI CME H41 sing N N 298 ERI CME H42 sing N N 299 ERI CME H43 sing N N 300 ERI CO4 OC4 doub N N 301 ERI C5 O5 sing N N 302 ERI C5 C6 sing N N 303 ERI C5 H5 sing N N 304 ERI C6 H61 sing N N 305 ERI C6 H62 sing N N 306 ERI C6 H63 sing N N 307 HOH O H1 sing N N 308 HOH O H2 sing N N 309 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1VAQ 'double helix' 1VAQ 'a-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DT 1 1_555 B DA 8 1_555 -0.048 -0.305 -0.006 -2.075 -10.498 -0.177 1 A_DT1:DA16_B A 1 ? B 16 ? 20 1 1 A DT 2 1_555 B DA 7 1_555 0.243 -0.394 -0.168 -9.891 -5.520 7.218 2 A_DT2:DA15_B A 2 ? B 15 ? 20 1 1 A DG 3 1_555 B DC 6 1_555 -0.267 -0.191 -0.397 -8.848 -7.540 -1.547 3 A_DG3:DC14_B A 3 ? B 14 ? 19 1 1 A DG 4 1_555 B DC 5 1_555 -0.102 -0.092 -0.153 -2.879 5.070 3.092 4 A_DG4:DC13_B A 4 ? B 13 ? 19 1 1 A DC 5 1_555 B DG 4 1_555 0.379 0.028 -0.404 2.581 0.159 6.180 5 A_DC5:DG12_B A 5 ? B 12 ? 19 1 1 A DC 6 1_555 B DG 3 1_555 0.390 -0.269 -0.144 5.117 -2.637 1.273 6 A_DC6:DG11_B A 6 ? B 11 ? 19 1 1 A DA 7 1_555 B DT 2 1_555 -0.076 -0.068 -0.252 8.334 -4.559 5.123 7 A_DA7:DT10_B A 7 ? B 10 ? 20 1 1 A DA 8 1_555 B DT 1 1_555 0.187 -0.093 -0.510 1.622 -13.157 -3.070 8 A_DA8:DT9_B A 8 ? B 9 ? 20 1 1 C DT 1 1_555 D DA 8 1_555 -0.520 -0.269 -0.866 5.250 -12.237 6.914 9 C_DT41:DA56_D C 41 ? D 56 ? 20 1 1 C DT 2 1_555 D DA 7 1_555 0.317 -0.024 -0.559 -1.117 -7.248 5.963 10 C_DT42:DA55_D C 42 ? D 55 ? 20 1 1 C DG 3 1_555 D DC 6 1_555 -0.114 -0.375 -0.261 -4.498 -4.518 -0.658 11 C_DG43:DC54_D C 43 ? D 54 ? 19 1 1 C DG 4 1_555 D DC 5 1_555 -0.300 -0.060 0.217 4.417 -2.176 1.998 12 C_DG44:DC53_D C 44 ? D 53 ? 19 1 1 C DC 5 1_555 D DG 4 1_555 -0.002 -0.168 -0.200 9.577 -7.523 -2.457 13 C_DC45:DG52_D C 45 ? D 52 ? 19 1 1 C DC 6 1_555 D DG 3 1_555 0.370 -0.222 0.104 4.785 -13.881 1.566 14 C_DC46:DG51_D C 46 ? D 51 ? 19 1 1 C DA 7 1_555 D DT 2 1_555 -0.175 -0.170 -0.375 -4.257 -2.293 -2.016 15 C_DA47:DT50_D C 47 ? D 50 ? 20 1 1 C DA 8 1_555 D DT 1 1_555 0.091 -0.246 -0.256 2.238 -16.129 -1.561 16 C_DA48:DT49_D C 48 ? D 49 ? 20 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DT 1 1_555 B DA 8 1_555 A DT 2 1_555 B DA 7 1_555 0.569 -0.697 3.533 3.767 8.805 37.972 -2.169 -0.367 3.335 13.276 -5.680 39.118 1 AA_DT1DT2:DA15DA16_BB A 1 ? B 16 ? A 2 ? B 15 ? 1 A DT 2 1_555 B DA 7 1_555 A DG 3 1_555 B DC 6 1_555 0.646 -0.987 3.252 0.612 17.168 28.435 -4.391 -1.038 2.312 31.572 -1.125 33.129 2 AA_DT2DG3:DC14DA15_BB A 2 ? B 15 ? A 3 ? B 14 ? 1 A DG 3 1_555 B DC 6 1_555 A DG 4 1_555 B DC 5 1_555 1.122 -2.364 3.301 -2.683 -2.232 22.644 -5.142 -3.801 3.361 -5.641 6.782 22.908 3 AA_DG3DG4:DC13DC14_BB A 3 ? B 14 ? A 4 ? B 13 ? 1 A DG 4 1_555 B DC 5 1_555 A DC 5 1_555 B DG 4 1_555 -0.265 -2.616 3.096 2.138 0.385 32.775 -4.688 0.812 3.043 0.682 -3.783 32.845 4 AA_DG4DC5:DG12DC13_BB A 4 ? B 13 ? A 5 ? B 12 ? 1 A DC 5 1_555 B DG 4 1_555 A DC 6 1_555 B DG 3 1_555 -1.696 -2.316 3.254 -4.281 1.349 20.928 -6.799 2.783 3.374 3.659 11.612 21.399 5 AA_DC5DC6:DG11DG12_BB A 5 ? B 12 ? A 6 ? B 11 ? 1 A DC 6 1_555 B DG 3 1_555 A DA 7 1_555 B DT 2 1_555 -0.895 -0.972 3.159 1.832 10.424 30.524 -3.439 1.908 2.637 19.094 -3.355 32.266 6 AA_DC6DA7:DT10DG11_BB A 6 ? B 11 ? A 7 ? B 10 ? 1 A DA 7 1_555 B DT 2 1_555 A DA 8 1_555 B DT 1 1_555 -0.657 -0.362 3.636 1.101 4.295 36.986 -1.196 1.190 3.553 6.740 -1.727 37.241 7 AA_DA7DA8:DT9DT10_BB A 7 ? B 10 ? A 8 ? B 9 ? 1 C DT 1 1_555 D DA 8 1_555 C DT 2 1_555 D DA 7 1_555 -0.229 -0.314 3.476 0.296 7.205 33.380 -1.738 0.439 3.336 12.364 -0.507 34.128 8 CC_DT41DT42:DA55DA56_DD C 41 ? D 56 ? C 42 ? D 55 ? 1 C DT 2 1_555 D DA 7 1_555 C DG 3 1_555 D DC 6 1_555 -0.567 -0.029 3.321 -12.740 9.035 38.943 -1.030 -0.601 3.260 12.937 18.242 41.845 9 CC_DT42DG43:DC54DA55_DD C 42 ? D 55 ? C 43 ? D 54 ? 1 C DG 3 1_555 D DC 6 1_555 C DG 4 1_555 D DC 5 1_555 1.191 -2.349 3.024 -2.186 4.790 21.326 -7.700 -3.827 2.314 12.695 5.795 21.960 10 CC_DG43DG44:DC53DC54_DD C 43 ? D 54 ? C 44 ? D 53 ? 1 C DG 4 1_555 D DC 5 1_555 C DC 5 1_555 D DG 4 1_555 -0.191 -2.245 3.150 2.277 -4.605 31.092 -3.268 0.781 3.417 -8.518 -4.212 31.503 11 CC_DG44DC45:DG52DC53_DD C 44 ? D 53 ? C 45 ? D 52 ? 1 C DC 5 1_555 D DG 4 1_555 C DC 6 1_555 D DG 3 1_555 -0.890 -1.927 3.347 -3.040 5.142 29.846 -4.689 1.095 3.053 9.860 5.828 30.425 12 CC_DC45DC46:DG51DG52_DD C 45 ? D 52 ? C 46 ? D 51 ? 1 C DC 6 1_555 D DG 3 1_555 C DA 7 1_555 D DT 2 1_555 -0.176 -0.422 3.392 7.866 17.910 32.380 -2.991 1.300 2.697 29.047 -12.758 37.694 13 CC_DC46DA47:DT50DG51_DD C 46 ? D 51 ? C 47 ? D 50 ? 1 C DA 7 1_555 D DT 2 1_555 C DA 8 1_555 D DT 1 1_555 -0.424 0.080 3.121 -0.464 -0.791 36.936 0.228 0.610 3.124 -1.249 0.732 36.947 14 CC_DA47DA48:DT49DT50_DD C 47 ? D 50 ? C 48 ? D 49 ? # loop_ _pdbx_entity_branch_list.entity_id _pdbx_entity_branch_list.comp_id _pdbx_entity_branch_list.num _pdbx_entity_branch_list.hetero 2 ARI 1 n 2 1GL 2 n 3 CDR 1 n 3 CDR 2 n 3 ERI 3 n # _atom_sites.entry_id 1VAQ _atom_sites.fract_transf_matrix[1][1] 0.023680 _atom_sites.fract_transf_matrix[1][2] 0.013672 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.027343 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.004063 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C MG N O P # loop_