data_1VAS # _entry.id 1VAS # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.386 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1VAS pdb_00001vas 10.2210/pdb1vas/pdb RCSB PDE022 ? ? WWPDB D_1000177008 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1996-01-31 2 'Structure model' 1 1 2008-05-22 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2013-05-01 5 'Structure model' 1 4 2021-11-03 6 'Structure model' 1 5 2024-02-14 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Derived calculations' 4 4 'Structure model' Other 5 5 'Structure model' 'Database references' 6 5 'Structure model' 'Derived calculations' 7 6 'Structure model' 'Data collection' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 5 'Structure model' database_2 2 5 'Structure model' struct_conn 3 5 'Structure model' struct_ref_seq_dif 4 6 'Structure model' chem_comp_atom 5 6 'Structure model' chem_comp_bond # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 5 'Structure model' '_database_2.pdbx_DOI' 2 5 'Structure model' '_database_2.pdbx_database_accession' 3 5 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 4 5 'Structure model' '_struct_ref_seq_dif.details' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1VAS _pdbx_database_status.recvd_initial_deposition_date 1995-09-08 _pdbx_database_status.deposit_site BNL _pdbx_database_status.process_site NDB _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Vassylyev, D.G.' 1 'Kashiwagi, T.' 2 'Mikami, Y.' 3 'Ariyoshi, M.' 4 'Iwai, S.' 5 'Ohtsuka, E.' 6 'Morikawa, K.' 7 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary ;Atomic model of a pyrimidine dimer excision repair enzyme complexed with a DNA substrate: structural basis for damaged DNA recognition. ; 'Cell(Cambridge,Mass.)' 83 773 782 1995 CELLB5 US 0092-8674 0998 ? 8521494 '10.1016/0092-8674(95)90190-6' 1 ;Crystal Structure of a Pyrimidine Dimer-Specific Excision Repair Enzyme from Bacteriophage T4: Refinement at 1.45 Angstroms and X-Ray Analysis of the Three Active Site Mutants ; J.Mol.Biol. 249 360 ? 1995 JMOBAK UK 0022-2836 0070 ? ? ? 2 'DNA Repair Enzymes' Curr.Opin.Struct.Biol. 3 17 ? 1993 COSBEF UK 0959-440X 0801 ? ? ? 3 'Role of the Basic Amino Acid Cluster and Glu-23 in Pyrimidine Dimer Glycosylase Activity of T4 Endonuclease V' Proc.Natl.Acad.Sci.USA 89 9420 ? 1992 PNASA6 US 0027-8424 0040 ? ? ? 4 'X-Ray Structure of T4 Endonuclease V: An Excision Repair Enzyme Specific for a Pyrimidine Dimer' Science 256 523 ? 1992 SCIEAS US 0036-8075 0038 ? ? ? 5 'Preliminary Crystallographic Study of Pyrimidine Dimer-Specific Excision Repair Enzyme from Bacteriophage T4' J.Mol.Biol. 202 683 ? 1988 JMOBAK UK 0022-2836 0070 ? ? ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Vassylyev, D.G.' 1 ? primary 'Kashiwagi, T.' 2 ? primary 'Mikami, Y.' 3 ? primary 'Ariyoshi, M.' 4 ? primary 'Iwai, S.' 5 ? primary 'Ohtsuka, E.' 6 ? primary 'Morikawa, K.' 7 ? 1 'Morikawa, K.' 8 ? 1 'Ariyoshi, M.' 9 ? 1 'Vassylyev, D.G.' 10 ? 1 'Matsumoto, O.' 11 ? 1 'Katayanagi, K.' 12 ? 1 'Ohtsuka, E.' 13 ? 2 'Morikawa, K.' 14 ? 3 'Doi, T.' 15 ? 3 'Recktenwald, A.' 16 ? 3 'Karaki, Y.' 17 ? 3 'Kikuchi, M.' 18 ? 3 'Morikawa, K.' 19 ? 3 'Ikehara, M.' 20 ? 3 'Inaoka, T.' 21 ? 3 'Hori, N.' 22 ? 3 'Ohtsuka, E.' 23 ? 4 'Morikawa, K.' 24 ? 4 'Matsumoto, O.' 25 ? 4 'Tsujimoto, M.' 26 ? 4 'Katayanagi, K.' 27 ? 4 'Ariyoshi, M.' 28 ? 4 'Doi, T.' 29 ? 4 'Ikehara, M.' 30 ? 4 'Inaoka, T.' 31 ? 4 'Ohtsuka, E.' 32 ? 5 'Morikawa, K.' 33 ? 5 'Tsujimoto, M.' 34 ? 5 'Ikehara, M.' 35 ? 5 'Inaoka, T.' 36 ? 5 'Ohtsuka, E.' 37 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*AP*TP*CP*GP*CP*GP*TP*TP*GP*CP*GP*CP*T)-3') ; 3958.571 1 ? ? ? ? 2 polymer syn ;DNA (5'-D(*TP*AP*GP*CP*GP*CP*AP*AP*CP*GP*CP*GP*A)-3') ; 3985.613 1 ? ? ? ? 3 polymer man 'PROTEIN (T4 ENDONUCLEASE V (E.C.3.1.25.1))' 15972.392 1 ? ? ? ? 4 water nat water 18.015 143 ? ? ? ? # _entity_keywords.entity_id 3 _entity_keywords.text 'MUTANT E23Q' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no no '(DA)(DT)(DC)(DG)(DC)(DG)(DT)(DT)(DG)(DC)(DG)(DC)(DT)' ATCGCGTTGCGCT B ? 2 polydeoxyribonucleotide no no '(DT)(DA)(DG)(DC)(DG)(DC)(DA)(DA)(DC)(DG)(DC)(DG)(DA)' TAGCGCAACGCGA C ? 3 'polypeptide(L)' no no ;TRINLTLVSELADQHLMAEYRQLPRVFGAVRKHVANGKRVRDFKISPTFILGAGHVTFFYDKLEFLRKRQIELIAECLKR GFNIKDTTVQDISDIPQEFRGDYIPHEASIAISQARLDEKIAQRPTWYKYYGKAIYA ; ;TRINLTLVSELADQHLMAEYRQLPRVFGAVRKHVANGKRVRDFKISPTFILGAGHVTFFYDKLEFLRKRQIELIAECLKR GFNIKDTTVQDISDIPQEFRGDYIPHEASIAISQARLDEKIAQRPTWYKYYGKAIYA ; A ? # _pdbx_entity_nonpoly.entity_id 4 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DA n 1 2 DT n 1 3 DC n 1 4 DG n 1 5 DC n 1 6 DG n 1 7 DT n 1 8 DT n 1 9 DG n 1 10 DC n 1 11 DG n 1 12 DC n 1 13 DT n 2 1 DT n 2 2 DA n 2 3 DG n 2 4 DC n 2 5 DG n 2 6 DC n 2 7 DA n 2 8 DA n 2 9 DC n 2 10 DG n 2 11 DC n 2 12 DG n 2 13 DA n 3 1 THR n 3 2 ARG n 3 3 ILE n 3 4 ASN n 3 5 LEU n 3 6 THR n 3 7 LEU n 3 8 VAL n 3 9 SER n 3 10 GLU n 3 11 LEU n 3 12 ALA n 3 13 ASP n 3 14 GLN n 3 15 HIS n 3 16 LEU n 3 17 MET n 3 18 ALA n 3 19 GLU n 3 20 TYR n 3 21 ARG n 3 22 GLN n 3 23 LEU n 3 24 PRO n 3 25 ARG n 3 26 VAL n 3 27 PHE n 3 28 GLY n 3 29 ALA n 3 30 VAL n 3 31 ARG n 3 32 LYS n 3 33 HIS n 3 34 VAL n 3 35 ALA n 3 36 ASN n 3 37 GLY n 3 38 LYS n 3 39 ARG n 3 40 VAL n 3 41 ARG n 3 42 ASP n 3 43 PHE n 3 44 LYS n 3 45 ILE n 3 46 SER n 3 47 PRO n 3 48 THR n 3 49 PHE n 3 50 ILE n 3 51 LEU n 3 52 GLY n 3 53 ALA n 3 54 GLY n 3 55 HIS n 3 56 VAL n 3 57 THR n 3 58 PHE n 3 59 PHE n 3 60 TYR n 3 61 ASP n 3 62 LYS n 3 63 LEU n 3 64 GLU n 3 65 PHE n 3 66 LEU n 3 67 ARG n 3 68 LYS n 3 69 ARG n 3 70 GLN n 3 71 ILE n 3 72 GLU n 3 73 LEU n 3 74 ILE n 3 75 ALA n 3 76 GLU n 3 77 CYS n 3 78 LEU n 3 79 LYS n 3 80 ARG n 3 81 GLY n 3 82 PHE n 3 83 ASN n 3 84 ILE n 3 85 LYS n 3 86 ASP n 3 87 THR n 3 88 THR n 3 89 VAL n 3 90 GLN n 3 91 ASP n 3 92 ILE n 3 93 SER n 3 94 ASP n 3 95 ILE n 3 96 PRO n 3 97 GLN n 3 98 GLU n 3 99 PHE n 3 100 ARG n 3 101 GLY n 3 102 ASP n 3 103 TYR n 3 104 ILE n 3 105 PRO n 3 106 HIS n 3 107 GLU n 3 108 ALA n 3 109 SER n 3 110 ILE n 3 111 ALA n 3 112 ILE n 3 113 SER n 3 114 GLN n 3 115 ALA n 3 116 ARG n 3 117 LEU n 3 118 ASP n 3 119 GLU n 3 120 LYS n 3 121 ILE n 3 122 ALA n 3 123 GLN n 3 124 ARG n 3 125 PRO n 3 126 THR n 3 127 TRP n 3 128 TYR n 3 129 LYS n 3 130 TYR n 3 131 TYR n 3 132 GLY n 3 133 LYS n 3 134 ALA n 3 135 ILE n 3 136 TYR n 3 137 ALA n # _entity_src_gen.entity_id 3 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus 'T4-like viruses' _entity_src_gen.pdbx_gene_src_gene DENV _entity_src_gen.gene_src_species 'Enterobacteria phage T4 sensu lato' _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Enterobacteria phage T4' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 10665 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene DENV _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DA 1 201 201 DA A B . n A 1 2 DT 2 202 202 DT T B . n A 1 3 DC 3 203 203 DC C B . n A 1 4 DG 4 204 204 DG G B . n A 1 5 DC 5 205 205 DC C B . n A 1 6 DG 6 206 206 DG G B . n A 1 7 DT 7 207 207 DT T B . n A 1 8 DT 8 208 208 DT T B . n A 1 9 DG 9 209 209 DG G B . n A 1 10 DC 10 210 210 DC C B . n A 1 11 DG 11 211 211 DG G B . n A 1 12 DC 12 212 212 DC C B . n A 1 13 DT 13 213 213 DT T B . n B 2 1 DT 1 214 214 DT T C . n B 2 2 DA 2 215 215 DA A C . n B 2 3 DG 3 216 216 DG G C . n B 2 4 DC 4 217 217 DC C C . n B 2 5 DG 5 218 218 DG G C . n B 2 6 DC 6 219 219 DC C C . n B 2 7 DA 7 220 220 DA A C . n B 2 8 DA 8 221 221 DA A C . n B 2 9 DC 9 222 222 DC C C . n B 2 10 DG 10 223 223 DG G C . n B 2 11 DC 11 224 224 DC C C . n B 2 12 DG 12 225 225 DG G C . n B 2 13 DA 13 226 226 DA A C . n C 3 1 THR 1 2 2 THR THR A . n C 3 2 ARG 2 3 3 ARG ARG A . n C 3 3 ILE 3 4 4 ILE ILE A . n C 3 4 ASN 4 5 5 ASN ASN A . n C 3 5 LEU 5 6 6 LEU LEU A . n C 3 6 THR 6 7 7 THR THR A . n C 3 7 LEU 7 8 8 LEU LEU A . n C 3 8 VAL 8 9 9 VAL VAL A . n C 3 9 SER 9 10 10 SER SER A . n C 3 10 GLU 10 11 11 GLU GLU A . n C 3 11 LEU 11 12 12 LEU LEU A . n C 3 12 ALA 12 13 13 ALA ALA A . n C 3 13 ASP 13 14 14 ASP ASP A . n C 3 14 GLN 14 15 15 GLN GLN A . n C 3 15 HIS 15 16 16 HIS HIS A . n C 3 16 LEU 16 17 17 LEU LEU A . n C 3 17 MET 17 18 18 MET MET A . n C 3 18 ALA 18 19 19 ALA ALA A . n C 3 19 GLU 19 20 20 GLU GLU A . n C 3 20 TYR 20 21 21 TYR TYR A . n C 3 21 ARG 21 22 22 ARG ARG A . n C 3 22 GLN 22 23 23 GLN GLN A . n C 3 23 LEU 23 24 24 LEU LEU A . n C 3 24 PRO 24 25 25 PRO PRO A . n C 3 25 ARG 25 26 26 ARG ARG A . n C 3 26 VAL 26 27 27 VAL VAL A . n C 3 27 PHE 27 28 28 PHE PHE A . n C 3 28 GLY 28 29 29 GLY GLY A . n C 3 29 ALA 29 30 30 ALA ALA A . n C 3 30 VAL 30 31 31 VAL VAL A . n C 3 31 ARG 31 32 32 ARG ARG A . n C 3 32 LYS 32 33 33 LYS LYS A . n C 3 33 HIS 33 34 34 HIS HIS A . n C 3 34 VAL 34 35 35 VAL VAL A . n C 3 35 ALA 35 36 36 ALA ALA A . n C 3 36 ASN 36 37 37 ASN ASN A . n C 3 37 GLY 37 38 38 GLY GLY A . n C 3 38 LYS 38 39 39 LYS LYS A . n C 3 39 ARG 39 40 40 ARG ARG A . n C 3 40 VAL 40 41 41 VAL VAL A . n C 3 41 ARG 41 42 42 ARG ARG A . n C 3 42 ASP 42 43 43 ASP ASP A . n C 3 43 PHE 43 44 44 PHE PHE A . n C 3 44 LYS 44 45 45 LYS LYS A . n C 3 45 ILE 45 46 46 ILE ILE A . n C 3 46 SER 46 47 47 SER SER A . n C 3 47 PRO 47 48 48 PRO PRO A . n C 3 48 THR 48 49 49 THR THR A . n C 3 49 PHE 49 50 50 PHE PHE A . n C 3 50 ILE 50 51 51 ILE ILE A . n C 3 51 LEU 51 52 52 LEU LEU A . n C 3 52 GLY 52 53 53 GLY GLY A . n C 3 53 ALA 53 54 54 ALA ALA A . n C 3 54 GLY 54 55 55 GLY GLY A . n C 3 55 HIS 55 56 56 HIS HIS A . n C 3 56 VAL 56 57 57 VAL VAL A . n C 3 57 THR 57 58 58 THR THR A . n C 3 58 PHE 58 59 59 PHE PHE A . n C 3 59 PHE 59 60 60 PHE PHE A . n C 3 60 TYR 60 61 61 TYR TYR A . n C 3 61 ASP 61 62 62 ASP ASP A . n C 3 62 LYS 62 63 63 LYS LYS A . n C 3 63 LEU 63 64 64 LEU LEU A . n C 3 64 GLU 64 65 65 GLU GLU A . n C 3 65 PHE 65 66 66 PHE PHE A . n C 3 66 LEU 66 67 67 LEU LEU A . n C 3 67 ARG 67 68 68 ARG ARG A . n C 3 68 LYS 68 69 69 LYS LYS A . n C 3 69 ARG 69 70 70 ARG ARG A . n C 3 70 GLN 70 71 71 GLN GLN A . n C 3 71 ILE 71 72 72 ILE ILE A . n C 3 72 GLU 72 73 73 GLU GLU A . n C 3 73 LEU 73 74 74 LEU LEU A . n C 3 74 ILE 74 75 75 ILE ILE A . n C 3 75 ALA 75 76 76 ALA ALA A . n C 3 76 GLU 76 77 77 GLU GLU A . n C 3 77 CYS 77 78 78 CYS CYS A . n C 3 78 LEU 78 79 79 LEU LEU A . n C 3 79 LYS 79 80 80 LYS LYS A . n C 3 80 ARG 80 81 81 ARG ARG A . n C 3 81 GLY 81 82 82 GLY GLY A . n C 3 82 PHE 82 83 83 PHE PHE A . n C 3 83 ASN 83 84 84 ASN ASN A . n C 3 84 ILE 84 85 85 ILE ILE A . n C 3 85 LYS 85 86 86 LYS LYS A . n C 3 86 ASP 86 87 87 ASP ASP A . n C 3 87 THR 87 88 88 THR THR A . n C 3 88 THR 88 89 89 THR THR A . n C 3 89 VAL 89 90 90 VAL VAL A . n C 3 90 GLN 90 91 91 GLN GLN A . n C 3 91 ASP 91 92 92 ASP ASP A . n C 3 92 ILE 92 93 93 ILE ILE A . n C 3 93 SER 93 94 94 SER SER A . n C 3 94 ASP 94 95 95 ASP ASP A . n C 3 95 ILE 95 96 96 ILE ILE A . n C 3 96 PRO 96 97 97 PRO PRO A . n C 3 97 GLN 97 98 98 GLN GLN A . n C 3 98 GLU 98 99 99 GLU GLU A . n C 3 99 PHE 99 100 100 PHE PHE A . n C 3 100 ARG 100 101 101 ARG ARG A . n C 3 101 GLY 101 102 102 GLY GLY A . n C 3 102 ASP 102 103 103 ASP ASP A . n C 3 103 TYR 103 104 104 TYR TYR A . n C 3 104 ILE 104 105 105 ILE ILE A . n C 3 105 PRO 105 106 106 PRO PRO A . n C 3 106 HIS 106 107 107 HIS HIS A . n C 3 107 GLU 107 108 108 GLU GLU A . n C 3 108 ALA 108 109 109 ALA ALA A . n C 3 109 SER 109 110 110 SER SER A . n C 3 110 ILE 110 111 111 ILE ILE A . n C 3 111 ALA 111 112 112 ALA ALA A . n C 3 112 ILE 112 113 113 ILE ILE A . n C 3 113 SER 113 114 114 SER SER A . n C 3 114 GLN 114 115 115 GLN GLN A . n C 3 115 ALA 115 116 116 ALA ALA A . n C 3 116 ARG 116 117 117 ARG ARG A . n C 3 117 LEU 117 118 118 LEU LEU A . n C 3 118 ASP 118 119 119 ASP ASP A . n C 3 119 GLU 119 120 120 GLU GLU A . n C 3 120 LYS 120 121 121 LYS LYS A . n C 3 121 ILE 121 122 122 ILE ILE A . n C 3 122 ALA 122 123 123 ALA ALA A . n C 3 123 GLN 123 124 124 GLN GLN A . n C 3 124 ARG 124 125 125 ARG ARG A . n C 3 125 PRO 125 126 126 PRO PRO A . n C 3 126 THR 126 127 127 THR THR A . n C 3 127 TRP 127 128 128 TRP TRP A . n C 3 128 TYR 128 129 129 TYR TYR A . n C 3 129 LYS 129 130 130 LYS LYS A . n C 3 130 TYR 130 131 131 TYR TYR A . n C 3 131 TYR 131 132 132 TYR TYR A . n C 3 132 GLY 132 133 133 GLY GLY A . n C 3 133 LYS 133 134 134 LYS LYS A . n C 3 134 ALA 134 135 135 ALA ALA A . n C 3 135 ILE 135 136 136 ILE ILE A . n C 3 136 TYR 136 137 137 TYR TYR A . n C 3 137 ALA 137 138 138 ALA ALA A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 HOH 1 304 304 HOH HOH B . D 4 HOH 2 308 308 HOH HOH B . D 4 HOH 3 310 310 HOH HOH B . D 4 HOH 4 316 316 HOH HOH B . D 4 HOH 5 319 319 HOH HOH B . D 4 HOH 6 325 325 HOH HOH B . D 4 HOH 7 335 335 HOH HOH B . D 4 HOH 8 352 352 HOH HOH B . D 4 HOH 9 356 356 HOH HOH B . D 4 HOH 10 375 375 HOH HOH B . D 4 HOH 11 379 379 HOH HOH B . D 4 HOH 12 380 380 HOH HOH B . D 4 HOH 13 381 381 HOH HOH B . D 4 HOH 14 396 396 HOH HOH B . D 4 HOH 15 401 401 HOH HOH B . D 4 HOH 16 405 405 HOH HOH B . D 4 HOH 17 410 410 HOH HOH B . D 4 HOH 18 413 413 HOH HOH B . D 4 HOH 19 419 419 HOH HOH B . D 4 HOH 20 421 421 HOH HOH B . D 4 HOH 21 422 422 HOH HOH B . D 4 HOH 22 426 426 HOH HOH B . D 4 HOH 23 427 427 HOH HOH B . D 4 HOH 24 442 442 HOH HOH B . E 4 HOH 1 305 305 HOH HOH C . E 4 HOH 2 315 315 HOH HOH C . E 4 HOH 3 324 324 HOH HOH C . E 4 HOH 4 329 329 HOH HOH C . E 4 HOH 5 332 332 HOH HOH C . E 4 HOH 6 337 337 HOH HOH C . E 4 HOH 7 339 339 HOH HOH C . E 4 HOH 8 342 342 HOH HOH C . E 4 HOH 9 347 347 HOH HOH C . E 4 HOH 10 348 348 HOH HOH C . E 4 HOH 11 350 350 HOH HOH C . E 4 HOH 12 355 355 HOH HOH C . E 4 HOH 13 360 360 HOH HOH C . E 4 HOH 14 363 363 HOH HOH C . E 4 HOH 15 366 366 HOH HOH C . E 4 HOH 16 368 368 HOH HOH C . E 4 HOH 17 370 370 HOH HOH C . E 4 HOH 18 374 374 HOH HOH C . E 4 HOH 19 389 389 HOH HOH C . E 4 HOH 20 400 400 HOH HOH C . E 4 HOH 21 402 402 HOH HOH C . E 4 HOH 22 403 403 HOH HOH C . E 4 HOH 23 409 409 HOH HOH C . E 4 HOH 24 417 417 HOH HOH C . E 4 HOH 25 423 423 HOH HOH C . E 4 HOH 26 430 430 HOH HOH C . E 4 HOH 27 434 434 HOH HOH C . E 4 HOH 28 441 441 HOH HOH C . E 4 HOH 29 443 443 HOH HOH C . F 4 HOH 1 301 301 HOH HOH A . F 4 HOH 2 302 302 HOH HOH A . F 4 HOH 3 303 303 HOH HOH A . F 4 HOH 4 306 306 HOH HOH A . F 4 HOH 5 307 307 HOH HOH A . F 4 HOH 6 309 309 HOH HOH A . F 4 HOH 7 311 311 HOH HOH A . F 4 HOH 8 312 312 HOH HOH A . F 4 HOH 9 313 313 HOH HOH A . F 4 HOH 10 314 314 HOH HOH A . F 4 HOH 11 317 317 HOH HOH A . F 4 HOH 12 318 318 HOH HOH A . F 4 HOH 13 320 320 HOH HOH A . F 4 HOH 14 321 321 HOH HOH A . F 4 HOH 15 322 322 HOH HOH A . F 4 HOH 16 323 323 HOH HOH A . F 4 HOH 17 326 326 HOH HOH A . F 4 HOH 18 327 327 HOH HOH A . F 4 HOH 19 328 328 HOH HOH A . F 4 HOH 20 330 330 HOH HOH A . F 4 HOH 21 331 331 HOH HOH A . F 4 HOH 22 333 333 HOH HOH A . F 4 HOH 23 334 334 HOH HOH A . F 4 HOH 24 336 336 HOH HOH A . F 4 HOH 25 338 338 HOH HOH A . F 4 HOH 26 340 340 HOH HOH A . F 4 HOH 27 341 341 HOH HOH A . F 4 HOH 28 343 343 HOH HOH A . F 4 HOH 29 344 344 HOH HOH A . F 4 HOH 30 345 345 HOH HOH A . F 4 HOH 31 346 346 HOH HOH A . F 4 HOH 32 349 349 HOH HOH A . F 4 HOH 33 351 351 HOH HOH A . F 4 HOH 34 353 353 HOH HOH A . F 4 HOH 35 354 354 HOH HOH A . F 4 HOH 36 357 357 HOH HOH A . F 4 HOH 37 358 358 HOH HOH A . F 4 HOH 38 359 359 HOH HOH A . F 4 HOH 39 361 361 HOH HOH A . F 4 HOH 40 362 362 HOH HOH A . F 4 HOH 41 364 364 HOH HOH A . F 4 HOH 42 365 365 HOH HOH A . F 4 HOH 43 367 367 HOH HOH A . F 4 HOH 44 369 369 HOH HOH A . F 4 HOH 45 371 371 HOH HOH A . F 4 HOH 46 372 372 HOH HOH A . F 4 HOH 47 373 373 HOH HOH A . F 4 HOH 48 376 376 HOH HOH A . F 4 HOH 49 377 377 HOH HOH A . F 4 HOH 50 378 378 HOH HOH A . F 4 HOH 51 382 382 HOH HOH A . F 4 HOH 52 383 383 HOH HOH A . F 4 HOH 53 384 384 HOH HOH A . F 4 HOH 54 385 385 HOH HOH A . F 4 HOH 55 386 386 HOH HOH A . F 4 HOH 56 387 387 HOH HOH A . F 4 HOH 57 388 388 HOH HOH A . F 4 HOH 58 390 390 HOH HOH A . F 4 HOH 59 391 391 HOH HOH A . F 4 HOH 60 392 392 HOH HOH A . F 4 HOH 61 393 393 HOH HOH A . F 4 HOH 62 394 394 HOH HOH A . F 4 HOH 63 395 395 HOH HOH A . F 4 HOH 64 397 397 HOH HOH A . F 4 HOH 65 398 398 HOH HOH A . F 4 HOH 66 399 399 HOH HOH A . F 4 HOH 67 404 404 HOH HOH A . F 4 HOH 68 407 407 HOH HOH A . F 4 HOH 69 408 408 HOH HOH A . F 4 HOH 70 411 411 HOH HOH A . F 4 HOH 71 412 412 HOH HOH A . F 4 HOH 72 414 414 HOH HOH A . F 4 HOH 73 415 415 HOH HOH A . F 4 HOH 74 416 416 HOH HOH A . F 4 HOH 75 418 418 HOH HOH A . F 4 HOH 76 420 420 HOH HOH A . F 4 HOH 77 424 424 HOH HOH A . F 4 HOH 78 425 425 HOH HOH A . F 4 HOH 79 428 428 HOH HOH A . F 4 HOH 80 429 429 HOH HOH A . F 4 HOH 81 431 431 HOH HOH A . F 4 HOH 82 432 432 HOH HOH A . F 4 HOH 83 433 433 HOH HOH A . F 4 HOH 84 435 435 HOH HOH A . F 4 HOH 85 436 436 HOH HOH A . F 4 HOH 86 437 437 HOH HOH A . F 4 HOH 87 438 438 HOH HOH A . F 4 HOH 88 439 439 HOH HOH A . F 4 HOH 89 440 440 HOH HOH A . F 4 HOH 90 444 444 HOH HOH A . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal X-PLOR refinement 3.1 ? 1 ELMS 'data reduction' . ? 2 # _cell.entry_id 1VAS _cell.length_a 118.820 _cell.length_b 118.820 _cell.length_c 36.280 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 1VAS _symmetry.space_group_name_H-M 'P 65' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall ? # _exptl.entry_id 1VAS _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.09 _exptl_crystal.density_percent_sol 60.21 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 277.00 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.00 _exptl_crystal_grow.pdbx_details 'pH 7.00, VAPOR DIFFUSION, HANGING DROP, temperature 277.00K' _exptl_crystal_grow.pdbx_pH_range ? # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 WATER ? ? ? 1 2 1 BIS-TRIS-PROPANE_HCL ? ? ? 1 3 1 'NH4 SULFATE' ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 293.00 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'MACSCIENCE DIP100' _diffrn_detector.pdbx_collection_date 1994-06-03 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator GRAPHITE _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type ? _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.5418 # _reflns.entry_id 1VAS _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F 2.000 _reflns.d_resolution_low 50.000 _reflns.d_resolution_high 2.750 _reflns.number_obs 5662 _reflns.number_all ? _reflns.percent_possible_obs 72.000 _reflns.pdbx_Rmerge_I_obs 0.0620000 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 6.000 _reflns.R_free_details ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? # _refine.entry_id 1VAS _refine.ls_number_reflns_obs 5447 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 2.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 10.000 _refine.ls_d_res_high 2.750 _refine.ls_percent_reflns_obs 72.000 _refine.ls_R_factor_obs 0.1520000 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.1520000 _refine.ls_R_factor_R_free 0.2400000 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean 7.80 _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_phase_error ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 1VAS _refine_analyze.Luzzati_coordinate_error_obs 0.27 _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1129 _refine_hist.pdbx_number_atoms_nucleic_acid 527 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 143 _refine_hist.number_atoms_total 1799 _refine_hist.d_res_high 2.750 _refine_hist.d_res_low 10.000 # _database_PDB_matrix.entry_id 1VAS _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1VAS _struct.title ;ATOMIC MODEL OF A PYRIMIDINE DIMER SPECIFIC EXCISION REPAIR ENZYME COMPLEXED WITH A DNA SUBSTRATE: STRUCTURAL BASIS FOR DAMAGED DNA RECOGNITION ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1VAS _struct_keywords.pdbx_keywords HYDROLASE/DNA _struct_keywords.text 'PROTEIN-DNA COMPLEX, DOUBLE HELIX, HYDROLASE-DNA COMPLEX' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 4 ? F N N 4 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform 1 UNP END5_BPT4 3 ? ? P04418 ? 2 PDB 1VAS 1 ? ? 1VAS ? 3 PDB 1VAS 2 ? ? 1VAS ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1VAS A 1 ? 137 ? P04418 2 ? 138 ? 2 138 2 2 1VAS B 1 ? 13 ? 1VAS 201 ? 213 ? 201 213 3 3 1VAS C 1 ? 13 ? 1VAS 214 ? 226 ? 214 226 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 1VAS _struct_ref_seq_dif.mon_id GLN _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 22 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code P04418 _struct_ref_seq_dif.db_mon_id GLU _struct_ref_seq_dif.pdbx_seq_db_seq_num 23 _struct_ref_seq_dif.details 'engineered mutation' _struct_ref_seq_dif.pdbx_auth_seq_num 23 _struct_ref_seq_dif.pdbx_ordinal 1 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 VAL C 8 ? GLU C 10 ? VAL A 9 GLU A 11 5 ? 3 HELX_P HELX_P2 2 ASP C 13 ? ALA C 35 ? ASP A 14 ALA A 36 1 ? 23 HELX_P HELX_P3 3 VAL C 40 ? ASP C 42 ? VAL A 41 ASP A 43 5 ? 3 HELX_P HELX_P4 4 HIS C 55 ? ASP C 61 ? HIS A 56 ASP A 62 1 ? 7 HELX_P HELX_P5 5 LEU C 63 ? LYS C 79 ? LEU A 64 LYS A 80 1 ? 17 HELX_P HELX_P6 6 GLN C 97 ? PHE C 99 ? GLN A 98 PHE A 100 5 ? 3 HELX_P HELX_P7 7 GLU C 107 ? ARG C 124 ? GLU A 108 ARG A 125 1 ? 18 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale none ? A DT 7 C5 ? ? ? 1_555 A DT 8 C5 ? ? B DT 207 B DT 208 1_555 ? ? ? ? ? ? ? 1.582 ? ? covale2 covale none ? A DT 7 C6 ? ? ? 1_555 A DT 8 C6 ? ? B DT 207 B DT 208 1_555 ? ? ? ? ? ? ? 1.609 ? ? hydrog1 hydrog ? ? A DT 2 N3 ? ? ? 1_555 B DA 13 N1 ? ? B DT 202 C DA 226 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DT 2 O4 ? ? ? 1_555 B DA 13 N6 ? ? B DT 202 C DA 226 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 3 N3 ? ? ? 1_555 B DG 12 N1 ? ? B DC 203 C DG 225 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DC 3 N4 ? ? ? 1_555 B DG 12 O6 ? ? B DC 203 C DG 225 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DC 3 O2 ? ? ? 1_555 B DG 12 N2 ? ? B DC 203 C DG 225 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DG 4 N1 ? ? ? 1_555 B DC 11 N3 ? ? B DG 204 C DC 224 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DG 4 N2 ? ? ? 1_555 B DC 11 O2 ? ? B DG 204 C DC 224 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DG 4 O6 ? ? ? 1_555 B DC 11 N4 ? ? B DG 204 C DC 224 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DC 5 N3 ? ? ? 1_555 B DG 10 N1 ? ? B DC 205 C DG 223 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DC 5 N4 ? ? ? 1_555 B DG 10 O6 ? ? B DC 205 C DG 223 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DC 5 O2 ? ? ? 1_555 B DG 10 N2 ? ? B DC 205 C DG 223 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DG 6 N1 ? ? ? 1_555 B DC 9 N3 ? ? B DG 206 C DC 222 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DG 6 N2 ? ? ? 1_555 B DC 9 O2 ? ? B DG 206 C DC 222 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DG 6 O6 ? ? ? 1_555 B DC 9 N4 ? ? B DG 206 C DC 222 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DT 8 O4 ? ? ? 1_555 B DC 6 N4 ? ? B DT 208 C DC 219 1_555 ? ? ? ? ? ? 'DT-DC MISPAIR' ? ? ? hydrog16 hydrog ? ? A DT 8 N3 ? ? ? 1_555 B DA 7 N1 ? ? B DT 208 C DA 220 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DT 8 O4 ? ? ? 1_555 B DA 7 N6 ? ? B DT 208 C DA 220 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DG 9 N1 ? ? ? 1_555 B DC 6 N3 ? ? B DG 209 C DC 219 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DG 9 N2 ? ? ? 1_555 B DC 6 O2 ? ? B DG 209 C DC 219 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DG 9 O6 ? ? ? 1_555 B DC 6 N4 ? ? B DG 209 C DC 219 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DC 10 N3 ? ? ? 1_555 B DG 5 N1 ? ? B DC 210 C DG 218 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DC 10 N4 ? ? ? 1_555 B DG 5 O6 ? ? B DC 210 C DG 218 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DC 10 O2 ? ? ? 1_555 B DG 5 N2 ? ? B DC 210 C DG 218 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DG 11 N1 ? ? ? 1_555 B DC 4 N3 ? ? B DG 211 C DC 217 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DG 11 N2 ? ? ? 1_555 B DC 4 O2 ? ? B DG 211 C DC 217 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DG 11 O6 ? ? ? 1_555 B DC 4 N4 ? ? B DG 211 C DC 217 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A DC 12 N3 ? ? ? 1_555 B DG 3 N1 ? ? B DC 212 C DG 216 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A DC 12 N4 ? ? ? 1_555 B DG 3 O6 ? ? B DC 212 C DG 216 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A DC 12 O2 ? ? ? 1_555 B DG 3 N2 ? ? B DC 212 C DG 216 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A DT 13 N3 ? ? ? 1_555 B DA 2 N1 ? ? B DT 213 C DA 215 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A DT 13 O4 ? ? ? 1_555 B DA 2 N6 ? ? B DT 213 C DA 215 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 "C3'" B DA 201 ? ? "C2'" B DA 201 ? ? 1.465 1.516 -0.051 0.008 N 2 1 "C3'" B DG 206 ? ? "C2'" B DG 206 ? ? 1.441 1.516 -0.075 0.008 N 3 1 "O3'" B DG 206 ? ? "C3'" B DG 206 ? ? 1.382 1.419 -0.037 0.006 N 4 1 "O3'" B DT 207 ? ? "C3'" B DT 207 ? ? 1.380 1.419 -0.039 0.006 N 5 1 C4 B DT 207 ? ? C5 B DT 207 ? ? 1.545 1.445 0.100 0.009 N 6 1 C5 B DT 207 ? ? C6 B DT 207 ? ? 1.553 1.339 0.214 0.007 N 7 1 C6 B DT 207 ? ? N1 B DT 207 ? ? 1.460 1.378 0.082 0.007 N 8 1 C5 B DT 207 ? ? C7 B DT 207 ? ? 1.539 1.496 0.043 0.006 N 9 1 P B DT 208 ? ? "O5'" B DT 208 ? ? 1.532 1.593 -0.061 0.010 N 10 1 C4 B DT 208 ? ? C5 B DT 208 ? ? 1.523 1.445 0.078 0.009 N 11 1 C5 B DT 208 ? ? C6 B DT 208 ? ? 1.569 1.339 0.230 0.007 N 12 1 C6 B DT 208 ? ? N1 B DT 208 ? ? 1.474 1.378 0.096 0.007 N 13 1 "O3'" B DT 208 ? ? P B DG 209 ? ? 1.533 1.607 -0.074 0.012 Y 14 1 "O3'" B DG 209 ? ? "C3'" B DG 209 ? ? 1.383 1.419 -0.036 0.006 N 15 1 "O3'" B DG 209 ? ? P B DC 210 ? ? 1.532 1.607 -0.075 0.012 Y 16 1 N1 C DT 214 ? ? C2 C DT 214 ? ? 1.433 1.376 0.057 0.008 N 17 1 "C5'" C DA 221 ? ? "C4'" C DA 221 ? ? 1.564 1.512 0.052 0.007 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" B DA 201 ? ? "C1'" B DA 201 ? ? N9 B DA 201 ? ? 111.34 108.30 3.04 0.30 N 2 1 "O4'" B DT 202 ? ? "C1'" B DT 202 ? ? N1 B DT 202 ? ? 110.91 108.30 2.61 0.30 N 3 1 "O4'" B DC 203 ? ? "C1'" B DC 203 ? ? N1 B DC 203 ? ? 110.23 108.30 1.93 0.30 N 4 1 "O4'" B DC 205 ? ? "C1'" B DC 205 ? ? N1 B DC 205 ? ? 111.35 108.30 3.05 0.30 N 5 1 "O4'" B DG 206 ? ? "C1'" B DG 206 ? ? N9 B DG 206 ? ? 111.69 108.30 3.39 0.30 N 6 1 "C5'" B DT 207 ? ? "C4'" B DT 207 ? ? "O4'" B DT 207 ? ? 119.01 109.80 9.21 1.10 N 7 1 "O4'" B DT 207 ? ? "C1'" B DT 207 ? ? N1 B DT 207 ? ? 114.60 108.30 6.30 0.30 N 8 1 C6 B DT 207 ? ? N1 B DT 207 ? ? C2 B DT 207 ? ? 125.58 121.30 4.28 0.50 N 9 1 C5 B DT 207 ? ? C6 B DT 207 ? ? N1 B DT 207 ? ? 116.19 123.70 -7.51 0.60 N 10 1 C4 B DT 207 ? ? C5 B DT 207 ? ? C7 B DT 207 ? ? 108.64 119.00 -10.36 0.60 N 11 1 C6 B DT 207 ? ? C5 B DT 207 ? ? C7 B DT 207 ? ? 113.37 122.90 -9.53 0.60 N 12 1 "O4'" B DT 208 ? ? "C4'" B DT 208 ? ? "C3'" B DT 208 ? ? 109.61 106.00 3.61 0.60 N 13 1 "O4'" B DT 208 ? ? "C1'" B DT 208 ? ? N1 B DT 208 ? ? 110.21 108.30 1.91 0.30 N 14 1 C6 B DT 208 ? ? N1 B DT 208 ? ? C2 B DT 208 ? ? 125.07 121.30 3.77 0.50 N 15 1 C5 B DT 208 ? ? C6 B DT 208 ? ? N1 B DT 208 ? ? 115.15 123.70 -8.55 0.60 N 16 1 C4 B DT 208 ? ? C5 B DT 208 ? ? C7 B DT 208 ? ? 108.91 119.00 -10.09 0.60 N 17 1 C6 B DT 208 ? ? C5 B DT 208 ? ? C7 B DT 208 ? ? 113.53 122.90 -9.37 0.60 N 18 1 "C3'" B DT 208 ? ? "O3'" B DT 208 ? ? P B DG 209 ? ? 128.20 119.70 8.50 1.20 Y 19 1 "O4'" B DC 212 ? ? "C1'" B DC 212 ? ? N1 B DC 212 ? ? 111.02 108.30 2.72 0.30 N 20 1 C6 B DT 213 ? ? C5 B DT 213 ? ? C7 B DT 213 ? ? 119.26 122.90 -3.64 0.60 N 21 1 C6 C DT 214 ? ? C5 C DT 214 ? ? C7 C DT 214 ? ? 119.02 122.90 -3.88 0.60 N 22 1 "O4'" C DG 216 ? ? "C1'" C DG 216 ? ? N9 C DG 216 ? ? 110.64 108.30 2.34 0.30 N 23 1 "O4'" C DC 217 ? ? "C1'" C DC 217 ? ? N1 C DC 217 ? ? 111.31 108.30 3.01 0.30 N 24 1 "O4'" C DA 220 ? ? "C1'" C DA 220 ? ? N9 C DA 220 ? ? 110.44 108.30 2.14 0.30 N 25 1 "C3'" C DA 220 ? ? "O3'" C DA 220 ? ? P C DA 221 ? ? 110.27 119.70 -9.43 1.20 Y 26 1 "O4'" C DA 221 ? ? "C4'" C DA 221 ? ? "C3'" C DA 221 ? ? 113.11 106.00 7.11 0.60 N 27 1 "C4'" C DA 221 ? ? "C3'" C DA 221 ? ? "C2'" C DA 221 ? ? 97.09 102.20 -5.11 0.70 N 28 1 "O4'" C DG 223 ? ? "C1'" C DG 223 ? ? N9 C DG 223 ? ? 111.46 108.30 3.16 0.30 N 29 1 "O4'" C DC 224 ? ? "C1'" C DC 224 ? ? N1 C DC 224 ? ? 110.30 108.30 2.00 0.30 N 30 1 "O4'" C DG 225 ? ? "C1'" C DG 225 ? ? N9 C DG 225 ? ? 110.66 108.30 2.36 0.30 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 PRO A 25 ? ? -56.73 -9.13 2 1 ASN A 84 ? ? -61.99 80.07 3 1 ARG A 125 ? ? -163.82 69.68 # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 DT B 207 ? ? 0.177 'SIDE CHAIN' 2 1 DT B 208 ? ? 0.142 'SIDE CHAIN' # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 DA OP3 O N N 88 DA P P N N 89 DA OP1 O N N 90 DA OP2 O N N 91 DA "O5'" O N N 92 DA "C5'" C N N 93 DA "C4'" C N R 94 DA "O4'" O N N 95 DA "C3'" C N S 96 DA "O3'" O N N 97 DA "C2'" C N N 98 DA "C1'" C N R 99 DA N9 N Y N 100 DA C8 C Y N 101 DA N7 N Y N 102 DA C5 C Y N 103 DA C6 C Y N 104 DA N6 N N N 105 DA N1 N Y N 106 DA C2 C Y N 107 DA N3 N Y N 108 DA C4 C Y N 109 DA HOP3 H N N 110 DA HOP2 H N N 111 DA "H5'" H N N 112 DA "H5''" H N N 113 DA "H4'" H N N 114 DA "H3'" H N N 115 DA "HO3'" H N N 116 DA "H2'" H N N 117 DA "H2''" H N N 118 DA "H1'" H N N 119 DA H8 H N N 120 DA H61 H N N 121 DA H62 H N N 122 DA H2 H N N 123 DC OP3 O N N 124 DC P P N N 125 DC OP1 O N N 126 DC OP2 O N N 127 DC "O5'" O N N 128 DC "C5'" C N N 129 DC "C4'" C N R 130 DC "O4'" O N N 131 DC "C3'" C N S 132 DC "O3'" O N N 133 DC "C2'" C N N 134 DC "C1'" C N R 135 DC N1 N N N 136 DC C2 C N N 137 DC O2 O N N 138 DC N3 N N N 139 DC C4 C N N 140 DC N4 N N N 141 DC C5 C N N 142 DC C6 C N N 143 DC HOP3 H N N 144 DC HOP2 H N N 145 DC "H5'" H N N 146 DC "H5''" H N N 147 DC "H4'" H N N 148 DC "H3'" H N N 149 DC "HO3'" H N N 150 DC "H2'" H N N 151 DC "H2''" H N N 152 DC "H1'" H N N 153 DC H41 H N N 154 DC H42 H N N 155 DC H5 H N N 156 DC H6 H N N 157 DG OP3 O N N 158 DG P P N N 159 DG OP1 O N N 160 DG OP2 O N N 161 DG "O5'" O N N 162 DG "C5'" C N N 163 DG "C4'" C N R 164 DG "O4'" O N N 165 DG "C3'" C N S 166 DG "O3'" O N N 167 DG "C2'" C N N 168 DG "C1'" C N R 169 DG N9 N Y N 170 DG C8 C Y N 171 DG N7 N Y N 172 DG C5 C Y N 173 DG C6 C N N 174 DG O6 O N N 175 DG N1 N N N 176 DG C2 C N N 177 DG N2 N N N 178 DG N3 N N N 179 DG C4 C Y N 180 DG HOP3 H N N 181 DG HOP2 H N N 182 DG "H5'" H N N 183 DG "H5''" H N N 184 DG "H4'" H N N 185 DG "H3'" H N N 186 DG "HO3'" H N N 187 DG "H2'" H N N 188 DG "H2''" H N N 189 DG "H1'" H N N 190 DG H8 H N N 191 DG H1 H N N 192 DG H21 H N N 193 DG H22 H N N 194 DT OP3 O N N 195 DT P P N N 196 DT OP1 O N N 197 DT OP2 O N N 198 DT "O5'" O N N 199 DT "C5'" C N N 200 DT "C4'" C N R 201 DT "O4'" O N N 202 DT "C3'" C N S 203 DT "O3'" O N N 204 DT "C2'" C N N 205 DT "C1'" C N R 206 DT N1 N N N 207 DT C2 C N N 208 DT O2 O N N 209 DT N3 N N N 210 DT C4 C N N 211 DT O4 O N N 212 DT C5 C N N 213 DT C7 C N N 214 DT C6 C N N 215 DT HOP3 H N N 216 DT HOP2 H N N 217 DT "H5'" H N N 218 DT "H5''" H N N 219 DT "H4'" H N N 220 DT "H3'" H N N 221 DT "HO3'" H N N 222 DT "H2'" H N N 223 DT "H2''" H N N 224 DT "H1'" H N N 225 DT H3 H N N 226 DT H71 H N N 227 DT H72 H N N 228 DT H73 H N N 229 DT H6 H N N 230 GLN N N N N 231 GLN CA C N S 232 GLN C C N N 233 GLN O O N N 234 GLN CB C N N 235 GLN CG C N N 236 GLN CD C N N 237 GLN OE1 O N N 238 GLN NE2 N N N 239 GLN OXT O N N 240 GLN H H N N 241 GLN H2 H N N 242 GLN HA H N N 243 GLN HB2 H N N 244 GLN HB3 H N N 245 GLN HG2 H N N 246 GLN HG3 H N N 247 GLN HE21 H N N 248 GLN HE22 H N N 249 GLN HXT H N N 250 GLU N N N N 251 GLU CA C N S 252 GLU C C N N 253 GLU O O N N 254 GLU CB C N N 255 GLU CG C N N 256 GLU CD C N N 257 GLU OE1 O N N 258 GLU OE2 O N N 259 GLU OXT O N N 260 GLU H H N N 261 GLU H2 H N N 262 GLU HA H N N 263 GLU HB2 H N N 264 GLU HB3 H N N 265 GLU HG2 H N N 266 GLU HG3 H N N 267 GLU HE2 H N N 268 GLU HXT H N N 269 GLY N N N N 270 GLY CA C N N 271 GLY C C N N 272 GLY O O N N 273 GLY OXT O N N 274 GLY H H N N 275 GLY H2 H N N 276 GLY HA2 H N N 277 GLY HA3 H N N 278 GLY HXT H N N 279 HIS N N N N 280 HIS CA C N S 281 HIS C C N N 282 HIS O O N N 283 HIS CB C N N 284 HIS CG C Y N 285 HIS ND1 N Y N 286 HIS CD2 C Y N 287 HIS CE1 C Y N 288 HIS NE2 N Y N 289 HIS OXT O N N 290 HIS H H N N 291 HIS H2 H N N 292 HIS HA H N N 293 HIS HB2 H N N 294 HIS HB3 H N N 295 HIS HD1 H N N 296 HIS HD2 H N N 297 HIS HE1 H N N 298 HIS HE2 H N N 299 HIS HXT H N N 300 HOH O O N N 301 HOH H1 H N N 302 HOH H2 H N N 303 ILE N N N N 304 ILE CA C N S 305 ILE C C N N 306 ILE O O N N 307 ILE CB C N S 308 ILE CG1 C N N 309 ILE CG2 C N N 310 ILE CD1 C N N 311 ILE OXT O N N 312 ILE H H N N 313 ILE H2 H N N 314 ILE HA H N N 315 ILE HB H N N 316 ILE HG12 H N N 317 ILE HG13 H N N 318 ILE HG21 H N N 319 ILE HG22 H N N 320 ILE HG23 H N N 321 ILE HD11 H N N 322 ILE HD12 H N N 323 ILE HD13 H N N 324 ILE HXT H N N 325 LEU N N N N 326 LEU CA C N S 327 LEU C C N N 328 LEU O O N N 329 LEU CB C N N 330 LEU CG C N N 331 LEU CD1 C N N 332 LEU CD2 C N N 333 LEU OXT O N N 334 LEU H H N N 335 LEU H2 H N N 336 LEU HA H N N 337 LEU HB2 H N N 338 LEU HB3 H N N 339 LEU HG H N N 340 LEU HD11 H N N 341 LEU HD12 H N N 342 LEU HD13 H N N 343 LEU HD21 H N N 344 LEU HD22 H N N 345 LEU HD23 H N N 346 LEU HXT H N N 347 LYS N N N N 348 LYS CA C N S 349 LYS C C N N 350 LYS O O N N 351 LYS CB C N N 352 LYS CG C N N 353 LYS CD C N N 354 LYS CE C N N 355 LYS NZ N N N 356 LYS OXT O N N 357 LYS H H N N 358 LYS H2 H N N 359 LYS HA H N N 360 LYS HB2 H N N 361 LYS HB3 H N N 362 LYS HG2 H N N 363 LYS HG3 H N N 364 LYS HD2 H N N 365 LYS HD3 H N N 366 LYS HE2 H N N 367 LYS HE3 H N N 368 LYS HZ1 H N N 369 LYS HZ2 H N N 370 LYS HZ3 H N N 371 LYS HXT H N N 372 MET N N N N 373 MET CA C N S 374 MET C C N N 375 MET O O N N 376 MET CB C N N 377 MET CG C N N 378 MET SD S N N 379 MET CE C N N 380 MET OXT O N N 381 MET H H N N 382 MET H2 H N N 383 MET HA H N N 384 MET HB2 H N N 385 MET HB3 H N N 386 MET HG2 H N N 387 MET HG3 H N N 388 MET HE1 H N N 389 MET HE2 H N N 390 MET HE3 H N N 391 MET HXT H N N 392 PHE N N N N 393 PHE CA C N S 394 PHE C C N N 395 PHE O O N N 396 PHE CB C N N 397 PHE CG C Y N 398 PHE CD1 C Y N 399 PHE CD2 C Y N 400 PHE CE1 C Y N 401 PHE CE2 C Y N 402 PHE CZ C Y N 403 PHE OXT O N N 404 PHE H H N N 405 PHE H2 H N N 406 PHE HA H N N 407 PHE HB2 H N N 408 PHE HB3 H N N 409 PHE HD1 H N N 410 PHE HD2 H N N 411 PHE HE1 H N N 412 PHE HE2 H N N 413 PHE HZ H N N 414 PHE HXT H N N 415 PRO N N N N 416 PRO CA C N S 417 PRO C C N N 418 PRO O O N N 419 PRO CB C N N 420 PRO CG C N N 421 PRO CD C N N 422 PRO OXT O N N 423 PRO H H N N 424 PRO HA H N N 425 PRO HB2 H N N 426 PRO HB3 H N N 427 PRO HG2 H N N 428 PRO HG3 H N N 429 PRO HD2 H N N 430 PRO HD3 H N N 431 PRO HXT H N N 432 SER N N N N 433 SER CA C N S 434 SER C C N N 435 SER O O N N 436 SER CB C N N 437 SER OG O N N 438 SER OXT O N N 439 SER H H N N 440 SER H2 H N N 441 SER HA H N N 442 SER HB2 H N N 443 SER HB3 H N N 444 SER HG H N N 445 SER HXT H N N 446 THR N N N N 447 THR CA C N S 448 THR C C N N 449 THR O O N N 450 THR CB C N R 451 THR OG1 O N N 452 THR CG2 C N N 453 THR OXT O N N 454 THR H H N N 455 THR H2 H N N 456 THR HA H N N 457 THR HB H N N 458 THR HG1 H N N 459 THR HG21 H N N 460 THR HG22 H N N 461 THR HG23 H N N 462 THR HXT H N N 463 TRP N N N N 464 TRP CA C N S 465 TRP C C N N 466 TRP O O N N 467 TRP CB C N N 468 TRP CG C Y N 469 TRP CD1 C Y N 470 TRP CD2 C Y N 471 TRP NE1 N Y N 472 TRP CE2 C Y N 473 TRP CE3 C Y N 474 TRP CZ2 C Y N 475 TRP CZ3 C Y N 476 TRP CH2 C Y N 477 TRP OXT O N N 478 TRP H H N N 479 TRP H2 H N N 480 TRP HA H N N 481 TRP HB2 H N N 482 TRP HB3 H N N 483 TRP HD1 H N N 484 TRP HE1 H N N 485 TRP HE3 H N N 486 TRP HZ2 H N N 487 TRP HZ3 H N N 488 TRP HH2 H N N 489 TRP HXT H N N 490 TYR N N N N 491 TYR CA C N S 492 TYR C C N N 493 TYR O O N N 494 TYR CB C N N 495 TYR CG C Y N 496 TYR CD1 C Y N 497 TYR CD2 C Y N 498 TYR CE1 C Y N 499 TYR CE2 C Y N 500 TYR CZ C Y N 501 TYR OH O N N 502 TYR OXT O N N 503 TYR H H N N 504 TYR H2 H N N 505 TYR HA H N N 506 TYR HB2 H N N 507 TYR HB3 H N N 508 TYR HD1 H N N 509 TYR HD2 H N N 510 TYR HE1 H N N 511 TYR HE2 H N N 512 TYR HH H N N 513 TYR HXT H N N 514 VAL N N N N 515 VAL CA C N S 516 VAL C C N N 517 VAL O O N N 518 VAL CB C N N 519 VAL CG1 C N N 520 VAL CG2 C N N 521 VAL OXT O N N 522 VAL H H N N 523 VAL H2 H N N 524 VAL HA H N N 525 VAL HB H N N 526 VAL HG11 H N N 527 VAL HG12 H N N 528 VAL HG13 H N N 529 VAL HG21 H N N 530 VAL HG22 H N N 531 VAL HG23 H N N 532 VAL HXT H N N 533 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 DA OP3 P sing N N 83 DA OP3 HOP3 sing N N 84 DA P OP1 doub N N 85 DA P OP2 sing N N 86 DA P "O5'" sing N N 87 DA OP2 HOP2 sing N N 88 DA "O5'" "C5'" sing N N 89 DA "C5'" "C4'" sing N N 90 DA "C5'" "H5'" sing N N 91 DA "C5'" "H5''" sing N N 92 DA "C4'" "O4'" sing N N 93 DA "C4'" "C3'" sing N N 94 DA "C4'" "H4'" sing N N 95 DA "O4'" "C1'" sing N N 96 DA "C3'" "O3'" sing N N 97 DA "C3'" "C2'" sing N N 98 DA "C3'" "H3'" sing N N 99 DA "O3'" "HO3'" sing N N 100 DA "C2'" "C1'" sing N N 101 DA "C2'" "H2'" sing N N 102 DA "C2'" "H2''" sing N N 103 DA "C1'" N9 sing N N 104 DA "C1'" "H1'" sing N N 105 DA N9 C8 sing Y N 106 DA N9 C4 sing Y N 107 DA C8 N7 doub Y N 108 DA C8 H8 sing N N 109 DA N7 C5 sing Y N 110 DA C5 C6 sing Y N 111 DA C5 C4 doub Y N 112 DA C6 N6 sing N N 113 DA C6 N1 doub Y N 114 DA N6 H61 sing N N 115 DA N6 H62 sing N N 116 DA N1 C2 sing Y N 117 DA C2 N3 doub Y N 118 DA C2 H2 sing N N 119 DA N3 C4 sing Y N 120 DC OP3 P sing N N 121 DC OP3 HOP3 sing N N 122 DC P OP1 doub N N 123 DC P OP2 sing N N 124 DC P "O5'" sing N N 125 DC OP2 HOP2 sing N N 126 DC "O5'" "C5'" sing N N 127 DC "C5'" "C4'" sing N N 128 DC "C5'" "H5'" sing N N 129 DC "C5'" "H5''" sing N N 130 DC "C4'" "O4'" sing N N 131 DC "C4'" "C3'" sing N N 132 DC "C4'" "H4'" sing N N 133 DC "O4'" "C1'" sing N N 134 DC "C3'" "O3'" sing N N 135 DC "C3'" "C2'" sing N N 136 DC "C3'" "H3'" sing N N 137 DC "O3'" "HO3'" sing N N 138 DC "C2'" "C1'" sing N N 139 DC "C2'" "H2'" sing N N 140 DC "C2'" "H2''" sing N N 141 DC "C1'" N1 sing N N 142 DC "C1'" "H1'" sing N N 143 DC N1 C2 sing N N 144 DC N1 C6 sing N N 145 DC C2 O2 doub N N 146 DC C2 N3 sing N N 147 DC N3 C4 doub N N 148 DC C4 N4 sing N N 149 DC C4 C5 sing N N 150 DC N4 H41 sing N N 151 DC N4 H42 sing N N 152 DC C5 C6 doub N N 153 DC C5 H5 sing N N 154 DC C6 H6 sing N N 155 DG OP3 P sing N N 156 DG OP3 HOP3 sing N N 157 DG P OP1 doub N N 158 DG P OP2 sing N N 159 DG P "O5'" sing N N 160 DG OP2 HOP2 sing N N 161 DG "O5'" "C5'" sing N N 162 DG "C5'" "C4'" sing N N 163 DG "C5'" "H5'" sing N N 164 DG "C5'" "H5''" sing N N 165 DG "C4'" "O4'" sing N N 166 DG "C4'" "C3'" sing N N 167 DG "C4'" "H4'" sing N N 168 DG "O4'" "C1'" sing N N 169 DG "C3'" "O3'" sing N N 170 DG "C3'" "C2'" sing N N 171 DG "C3'" "H3'" sing N N 172 DG "O3'" "HO3'" sing N N 173 DG "C2'" "C1'" sing N N 174 DG "C2'" "H2'" sing N N 175 DG "C2'" "H2''" sing N N 176 DG "C1'" N9 sing N N 177 DG "C1'" "H1'" sing N N 178 DG N9 C8 sing Y N 179 DG N9 C4 sing Y N 180 DG C8 N7 doub Y N 181 DG C8 H8 sing N N 182 DG N7 C5 sing Y N 183 DG C5 C6 sing N N 184 DG C5 C4 doub Y N 185 DG C6 O6 doub N N 186 DG C6 N1 sing N N 187 DG N1 C2 sing N N 188 DG N1 H1 sing N N 189 DG C2 N2 sing N N 190 DG C2 N3 doub N N 191 DG N2 H21 sing N N 192 DG N2 H22 sing N N 193 DG N3 C4 sing N N 194 DT OP3 P sing N N 195 DT OP3 HOP3 sing N N 196 DT P OP1 doub N N 197 DT P OP2 sing N N 198 DT P "O5'" sing N N 199 DT OP2 HOP2 sing N N 200 DT "O5'" "C5'" sing N N 201 DT "C5'" "C4'" sing N N 202 DT "C5'" "H5'" sing N N 203 DT "C5'" "H5''" sing N N 204 DT "C4'" "O4'" sing N N 205 DT "C4'" "C3'" sing N N 206 DT "C4'" "H4'" sing N N 207 DT "O4'" "C1'" sing N N 208 DT "C3'" "O3'" sing N N 209 DT "C3'" "C2'" sing N N 210 DT "C3'" "H3'" sing N N 211 DT "O3'" "HO3'" sing N N 212 DT "C2'" "C1'" sing N N 213 DT "C2'" "H2'" sing N N 214 DT "C2'" "H2''" sing N N 215 DT "C1'" N1 sing N N 216 DT "C1'" "H1'" sing N N 217 DT N1 C2 sing N N 218 DT N1 C6 sing N N 219 DT C2 O2 doub N N 220 DT C2 N3 sing N N 221 DT N3 C4 sing N N 222 DT N3 H3 sing N N 223 DT C4 O4 doub N N 224 DT C4 C5 sing N N 225 DT C5 C7 sing N N 226 DT C5 C6 doub N N 227 DT C7 H71 sing N N 228 DT C7 H72 sing N N 229 DT C7 H73 sing N N 230 DT C6 H6 sing N N 231 GLN N CA sing N N 232 GLN N H sing N N 233 GLN N H2 sing N N 234 GLN CA C sing N N 235 GLN CA CB sing N N 236 GLN CA HA sing N N 237 GLN C O doub N N 238 GLN C OXT sing N N 239 GLN CB CG sing N N 240 GLN CB HB2 sing N N 241 GLN CB HB3 sing N N 242 GLN CG CD sing N N 243 GLN CG HG2 sing N N 244 GLN CG HG3 sing N N 245 GLN CD OE1 doub N N 246 GLN CD NE2 sing N N 247 GLN NE2 HE21 sing N N 248 GLN NE2 HE22 sing N N 249 GLN OXT HXT sing N N 250 GLU N CA sing N N 251 GLU N H sing N N 252 GLU N H2 sing N N 253 GLU CA C sing N N 254 GLU CA CB sing N N 255 GLU CA HA sing N N 256 GLU C O doub N N 257 GLU C OXT sing N N 258 GLU CB CG sing N N 259 GLU CB HB2 sing N N 260 GLU CB HB3 sing N N 261 GLU CG CD sing N N 262 GLU CG HG2 sing N N 263 GLU CG HG3 sing N N 264 GLU CD OE1 doub N N 265 GLU CD OE2 sing N N 266 GLU OE2 HE2 sing N N 267 GLU OXT HXT sing N N 268 GLY N CA sing N N 269 GLY N H sing N N 270 GLY N H2 sing N N 271 GLY CA C sing N N 272 GLY CA HA2 sing N N 273 GLY CA HA3 sing N N 274 GLY C O doub N N 275 GLY C OXT sing N N 276 GLY OXT HXT sing N N 277 HIS N CA sing N N 278 HIS N H sing N N 279 HIS N H2 sing N N 280 HIS CA C sing N N 281 HIS CA CB sing N N 282 HIS CA HA sing N N 283 HIS C O doub N N 284 HIS C OXT sing N N 285 HIS CB CG sing N N 286 HIS CB HB2 sing N N 287 HIS CB HB3 sing N N 288 HIS CG ND1 sing Y N 289 HIS CG CD2 doub Y N 290 HIS ND1 CE1 doub Y N 291 HIS ND1 HD1 sing N N 292 HIS CD2 NE2 sing Y N 293 HIS CD2 HD2 sing N N 294 HIS CE1 NE2 sing Y N 295 HIS CE1 HE1 sing N N 296 HIS NE2 HE2 sing N N 297 HIS OXT HXT sing N N 298 HOH O H1 sing N N 299 HOH O H2 sing N N 300 ILE N CA sing N N 301 ILE N H sing N N 302 ILE N H2 sing N N 303 ILE CA C sing N N 304 ILE CA CB sing N N 305 ILE CA HA sing N N 306 ILE C O doub N N 307 ILE C OXT sing N N 308 ILE CB CG1 sing N N 309 ILE CB CG2 sing N N 310 ILE CB HB sing N N 311 ILE CG1 CD1 sing N N 312 ILE CG1 HG12 sing N N 313 ILE CG1 HG13 sing N N 314 ILE CG2 HG21 sing N N 315 ILE CG2 HG22 sing N N 316 ILE CG2 HG23 sing N N 317 ILE CD1 HD11 sing N N 318 ILE CD1 HD12 sing N N 319 ILE CD1 HD13 sing N N 320 ILE OXT HXT sing N N 321 LEU N CA sing N N 322 LEU N H sing N N 323 LEU N H2 sing N N 324 LEU CA C sing N N 325 LEU CA CB sing N N 326 LEU CA HA sing N N 327 LEU C O doub N N 328 LEU C OXT sing N N 329 LEU CB CG sing N N 330 LEU CB HB2 sing N N 331 LEU CB HB3 sing N N 332 LEU CG CD1 sing N N 333 LEU CG CD2 sing N N 334 LEU CG HG sing N N 335 LEU CD1 HD11 sing N N 336 LEU CD1 HD12 sing N N 337 LEU CD1 HD13 sing N N 338 LEU CD2 HD21 sing N N 339 LEU CD2 HD22 sing N N 340 LEU CD2 HD23 sing N N 341 LEU OXT HXT sing N N 342 LYS N CA sing N N 343 LYS N H sing N N 344 LYS N H2 sing N N 345 LYS CA C sing N N 346 LYS CA CB sing N N 347 LYS CA HA sing N N 348 LYS C O doub N N 349 LYS C OXT sing N N 350 LYS CB CG sing N N 351 LYS CB HB2 sing N N 352 LYS CB HB3 sing N N 353 LYS CG CD sing N N 354 LYS CG HG2 sing N N 355 LYS CG HG3 sing N N 356 LYS CD CE sing N N 357 LYS CD HD2 sing N N 358 LYS CD HD3 sing N N 359 LYS CE NZ sing N N 360 LYS CE HE2 sing N N 361 LYS CE HE3 sing N N 362 LYS NZ HZ1 sing N N 363 LYS NZ HZ2 sing N N 364 LYS NZ HZ3 sing N N 365 LYS OXT HXT sing N N 366 MET N CA sing N N 367 MET N H sing N N 368 MET N H2 sing N N 369 MET CA C sing N N 370 MET CA CB sing N N 371 MET CA HA sing N N 372 MET C O doub N N 373 MET C OXT sing N N 374 MET CB CG sing N N 375 MET CB HB2 sing N N 376 MET CB HB3 sing N N 377 MET CG SD sing N N 378 MET CG HG2 sing N N 379 MET CG HG3 sing N N 380 MET SD CE sing N N 381 MET CE HE1 sing N N 382 MET CE HE2 sing N N 383 MET CE HE3 sing N N 384 MET OXT HXT sing N N 385 PHE N CA sing N N 386 PHE N H sing N N 387 PHE N H2 sing N N 388 PHE CA C sing N N 389 PHE CA CB sing N N 390 PHE CA HA sing N N 391 PHE C O doub N N 392 PHE C OXT sing N N 393 PHE CB CG sing N N 394 PHE CB HB2 sing N N 395 PHE CB HB3 sing N N 396 PHE CG CD1 doub Y N 397 PHE CG CD2 sing Y N 398 PHE CD1 CE1 sing Y N 399 PHE CD1 HD1 sing N N 400 PHE CD2 CE2 doub Y N 401 PHE CD2 HD2 sing N N 402 PHE CE1 CZ doub Y N 403 PHE CE1 HE1 sing N N 404 PHE CE2 CZ sing Y N 405 PHE CE2 HE2 sing N N 406 PHE CZ HZ sing N N 407 PHE OXT HXT sing N N 408 PRO N CA sing N N 409 PRO N CD sing N N 410 PRO N H sing N N 411 PRO CA C sing N N 412 PRO CA CB sing N N 413 PRO CA HA sing N N 414 PRO C O doub N N 415 PRO C OXT sing N N 416 PRO CB CG sing N N 417 PRO CB HB2 sing N N 418 PRO CB HB3 sing N N 419 PRO CG CD sing N N 420 PRO CG HG2 sing N N 421 PRO CG HG3 sing N N 422 PRO CD HD2 sing N N 423 PRO CD HD3 sing N N 424 PRO OXT HXT sing N N 425 SER N CA sing N N 426 SER N H sing N N 427 SER N H2 sing N N 428 SER CA C sing N N 429 SER CA CB sing N N 430 SER CA HA sing N N 431 SER C O doub N N 432 SER C OXT sing N N 433 SER CB OG sing N N 434 SER CB HB2 sing N N 435 SER CB HB3 sing N N 436 SER OG HG sing N N 437 SER OXT HXT sing N N 438 THR N CA sing N N 439 THR N H sing N N 440 THR N H2 sing N N 441 THR CA C sing N N 442 THR CA CB sing N N 443 THR CA HA sing N N 444 THR C O doub N N 445 THR C OXT sing N N 446 THR CB OG1 sing N N 447 THR CB CG2 sing N N 448 THR CB HB sing N N 449 THR OG1 HG1 sing N N 450 THR CG2 HG21 sing N N 451 THR CG2 HG22 sing N N 452 THR CG2 HG23 sing N N 453 THR OXT HXT sing N N 454 TRP N CA sing N N 455 TRP N H sing N N 456 TRP N H2 sing N N 457 TRP CA C sing N N 458 TRP CA CB sing N N 459 TRP CA HA sing N N 460 TRP C O doub N N 461 TRP C OXT sing N N 462 TRP CB CG sing N N 463 TRP CB HB2 sing N N 464 TRP CB HB3 sing N N 465 TRP CG CD1 doub Y N 466 TRP CG CD2 sing Y N 467 TRP CD1 NE1 sing Y N 468 TRP CD1 HD1 sing N N 469 TRP CD2 CE2 doub Y N 470 TRP CD2 CE3 sing Y N 471 TRP NE1 CE2 sing Y N 472 TRP NE1 HE1 sing N N 473 TRP CE2 CZ2 sing Y N 474 TRP CE3 CZ3 doub Y N 475 TRP CE3 HE3 sing N N 476 TRP CZ2 CH2 doub Y N 477 TRP CZ2 HZ2 sing N N 478 TRP CZ3 CH2 sing Y N 479 TRP CZ3 HZ3 sing N N 480 TRP CH2 HH2 sing N N 481 TRP OXT HXT sing N N 482 TYR N CA sing N N 483 TYR N H sing N N 484 TYR N H2 sing N N 485 TYR CA C sing N N 486 TYR CA CB sing N N 487 TYR CA HA sing N N 488 TYR C O doub N N 489 TYR C OXT sing N N 490 TYR CB CG sing N N 491 TYR CB HB2 sing N N 492 TYR CB HB3 sing N N 493 TYR CG CD1 doub Y N 494 TYR CG CD2 sing Y N 495 TYR CD1 CE1 sing Y N 496 TYR CD1 HD1 sing N N 497 TYR CD2 CE2 doub Y N 498 TYR CD2 HD2 sing N N 499 TYR CE1 CZ doub Y N 500 TYR CE1 HE1 sing N N 501 TYR CE2 CZ sing Y N 502 TYR CE2 HE2 sing N N 503 TYR CZ OH sing N N 504 TYR OH HH sing N N 505 TYR OXT HXT sing N N 506 VAL N CA sing N N 507 VAL N H sing N N 508 VAL N H2 sing N N 509 VAL CA C sing N N 510 VAL CA CB sing N N 511 VAL CA HA sing N N 512 VAL C O doub N N 513 VAL C OXT sing N N 514 VAL CB CG1 sing N N 515 VAL CB CG2 sing N N 516 VAL CB HB sing N N 517 VAL CG1 HG11 sing N N 518 VAL CG1 HG12 sing N N 519 VAL CG1 HG13 sing N N 520 VAL CG2 HG21 sing N N 521 VAL CG2 HG22 sing N N 522 VAL CG2 HG23 sing N N 523 VAL OXT HXT sing N N 524 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1VAS 'double helix' 1VAS 'b-form double helix' 1VAS 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DT 2 1_555 B DA 13 1_555 -0.038 -0.084 -0.187 -1.983 -19.039 1.875 1 B_DT202:DA226_C B 202 ? C 226 ? 20 1 1 A DC 3 1_555 B DG 12 1_555 0.130 -0.061 0.024 -4.431 -8.424 -0.737 2 B_DC203:DG225_C B 203 ? C 225 ? 19 1 1 A DG 4 1_555 B DC 11 1_555 -0.164 -0.092 0.664 6.007 -3.961 -2.282 3 B_DG204:DC224_C B 204 ? C 224 ? 19 1 1 A DC 5 1_555 B DG 10 1_555 0.068 0.040 -0.249 10.576 0.061 -2.664 4 B_DC205:DG223_C B 205 ? C 223 ? 19 1 1 A DG 6 1_555 B DC 9 1_555 -0.246 -0.013 0.924 30.791 6.858 -0.792 5 B_DG206:DC222_C B 206 ? C 222 ? 19 1 1 A DT 8 1_555 B DA 7 1_555 -0.135 0.212 1.370 -47.323 -1.647 -3.481 6 B_DT208:DA220_C B 208 ? C 220 ? 20 1 1 A DG 9 1_555 B DC 6 1_555 -0.188 -0.118 0.511 0.115 -19.118 -1.950 7 B_DG209:DC219_C B 209 ? C 219 ? 19 1 1 A DC 10 1_555 B DG 5 1_555 0.070 0.016 0.126 -8.998 -12.350 -0.676 8 B_DC210:DG218_C B 210 ? C 218 ? 19 1 1 A DG 11 1_555 B DC 4 1_555 -0.121 -0.099 0.518 -2.615 -14.571 -2.240 9 B_DG211:DC217_C B 211 ? C 217 ? 19 1 1 A DC 12 1_555 B DG 3 1_555 0.153 -0.028 0.116 -0.646 -15.598 -2.481 10 B_DC212:DG216_C B 212 ? C 216 ? 19 1 1 A DT 13 1_555 B DA 2 1_555 -0.101 -0.007 0.312 -5.052 -11.549 -1.280 11 B_DT213:DA215_C B 213 ? C 215 ? 20 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DT 2 1_555 B DA 13 1_555 A DC 3 1_555 B DG 12 1_555 -0.349 0.023 3.506 -3.961 4.483 40.076 -0.507 0.027 3.506 6.498 5.741 40.502 1 BB_DT202DC203:DG225DA226_CC B 202 ? C 226 ? B 203 ? C 225 ? 1 A DC 3 1_555 B DG 12 1_555 A DG 4 1_555 B DC 11 1_555 -0.142 0.186 2.952 -5.835 2.566 35.001 -0.035 -0.541 2.943 4.224 9.603 35.559 2 BB_DC203DG204:DC224DG225_CC B 203 ? C 225 ? B 204 ? C 224 ? 1 A DG 4 1_555 B DC 11 1_555 A DC 5 1_555 B DG 10 1_555 0.253 -0.336 3.319 7.622 1.902 33.579 -0.870 0.783 3.273 3.238 -12.974 34.460 3 BB_DG204DC205:DG223DC224_CC B 204 ? C 224 ? B 205 ? C 223 ? 1 A DC 5 1_555 B DG 10 1_555 A DG 6 1_555 B DC 9 1_555 -0.108 -0.013 3.059 -7.038 5.892 25.522 -1.431 -1.445 2.909 12.820 15.313 27.097 4 BB_DC205DG206:DC222DG223_CC B 205 ? C 223 ? B 206 ? C 222 ? 1 A DT 8 1_555 B DA 7 1_555 A DG 9 1_555 B DC 6 1_555 -0.901 0.540 2.313 4.529 -11.347 33.693 1.967 1.901 1.905 -18.825 -7.513 35.779 5 BB_DT208DG209:DC219DA220_CC B 208 ? C 220 ? B 209 ? C 219 ? 1 A DG 9 1_555 B DC 6 1_555 A DC 10 1_555 B DG 5 1_555 0.550 0.345 3.482 6.209 -1.587 38.956 0.712 -0.026 3.509 -2.360 -9.234 39.459 6 BB_DG209DC210:DG218DC219_CC B 209 ? C 219 ? B 210 ? C 218 ? 1 A DC 10 1_555 B DG 5 1_555 A DG 11 1_555 B DC 4 1_555 -0.749 0.934 3.433 -10.987 0.876 35.694 1.334 -0.412 3.524 1.388 17.419 37.304 7 BB_DC210DG211:DC217DG218_CC B 210 ? C 218 ? B 211 ? C 217 ? 1 A DG 11 1_555 B DC 4 1_555 A DC 12 1_555 B DG 3 1_555 -0.100 -0.093 3.240 2.899 0.903 34.967 -0.289 0.595 3.218 1.500 -4.814 35.094 8 BB_DG211DC212:DG216DC217_CC B 211 ? C 217 ? B 212 ? C 216 ? 1 A DC 12 1_555 B DG 3 1_555 A DT 13 1_555 B DA 2 1_555 -0.161 0.110 3.637 -3.666 -0.155 34.450 0.212 -0.357 3.634 -0.261 6.168 34.639 9 BB_DC212DT213:DA215DG216_CC B 212 ? C 216 ? B 213 ? C 215 ? # _atom_sites.entry_id 1VAS _atom_sites.fract_transf_matrix[1][1] 0.008416 _atom_sites.fract_transf_matrix[1][2] 0.004859 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.009718 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.027563 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_