data_1VDL # _entry.id 1VDL # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.383 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1VDL pdb_00001vdl 10.2210/pdb1vdl/pdb RCSB RCSB006496 ? ? WWPDB D_1000006496 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2004-09-23 2 'Structure model' 1 1 2008-04-27 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-03-02 5 'Structure model' 1 4 2023-12-27 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 5 'Structure model' 'Data collection' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_nmr_software 3 4 'Structure model' pdbx_nmr_spectrometer 4 4 'Structure model' pdbx_struct_assembly 5 4 'Structure model' pdbx_struct_oper_list 6 4 'Structure model' struct_ref_seq_dif 7 5 'Structure model' chem_comp_atom 8 5 'Structure model' chem_comp_bond # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_nmr_software.name' 4 4 'Structure model' '_pdbx_nmr_spectrometer.model' 5 4 'Structure model' '_struct_ref_seq_dif.details' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1VDL _pdbx_database_status.recvd_initial_deposition_date 2004-03-23 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_mr REL _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id mmt007015604.1 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Doi-Katayama, Y.' 1 'Hirota, H.' 2 'Saito, K.' 3 'Koshiba, S.' 4 'Kigawa, T.' 5 'Yokoyama, S.' 6 'RIKEN Structural Genomics/Proteomics Initiative (RSGI)' 7 # _citation.id primary _citation.title 'Solution Structure of RSGI RUH-013, a UBA domain in Mouse cDNA' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Doi-Katayama, Y.' 1 ? primary 'Hirota, H.' 2 ? primary 'Saito, K.' 3 ? primary 'Koshiba, S.' 4 ? primary 'Kigawa, T.' 5 ? primary 'Yokoyama, S.' 6 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'Ubiquitin carboxyl-terminal hydrolase 25' _entity.formula_weight 8417.175 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec 3.1.2.15 _entity.pdbx_mutation ? _entity.pdbx_fragment 'UBA domain' _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name 'RSGI RUH-013, Ubiquitin thiolesterase 25, Ubiquitin-specific processing protease 25, Deubiquitinating enzyme 25, mUSP25' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code GSSGSSGMTVEQNVLQQSAAQKHQQTFLNQLREITGINDAQILQQALKDSNGNLELAVAFLTAKNAKTPPQEETSGPSSG _entity_poly.pdbx_seq_one_letter_code_can GSSGSSGMTVEQNVLQQSAAQKHQQTFLNQLREITGINDAQILQQALKDSNGNLELAVAFLTAKNAKTPPQEETSGPSSG _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier mmt007015604.1 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 SER n 1 4 GLY n 1 5 SER n 1 6 SER n 1 7 GLY n 1 8 MET n 1 9 THR n 1 10 VAL n 1 11 GLU n 1 12 GLN n 1 13 ASN n 1 14 VAL n 1 15 LEU n 1 16 GLN n 1 17 GLN n 1 18 SER n 1 19 ALA n 1 20 ALA n 1 21 GLN n 1 22 LYS n 1 23 HIS n 1 24 GLN n 1 25 GLN n 1 26 THR n 1 27 PHE n 1 28 LEU n 1 29 ASN n 1 30 GLN n 1 31 LEU n 1 32 ARG n 1 33 GLU n 1 34 ILE n 1 35 THR n 1 36 GLY n 1 37 ILE n 1 38 ASN n 1 39 ASP n 1 40 ALA n 1 41 GLN n 1 42 ILE n 1 43 LEU n 1 44 GLN n 1 45 GLN n 1 46 ALA n 1 47 LEU n 1 48 LYS n 1 49 ASP n 1 50 SER n 1 51 ASN n 1 52 GLY n 1 53 ASN n 1 54 LEU n 1 55 GLU n 1 56 LEU n 1 57 ALA n 1 58 VAL n 1 59 ALA n 1 60 PHE n 1 61 LEU n 1 62 THR n 1 63 ALA n 1 64 LYS n 1 65 ASN n 1 66 ALA n 1 67 LYS n 1 68 THR n 1 69 PRO n 1 70 PRO n 1 71 GLN n 1 72 GLU n 1 73 GLU n 1 74 THR n 1 75 SER n 1 76 GLY n 1 77 PRO n 1 78 SER n 1 79 SER n 1 80 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name 'house mouse' _entity_src_gen.gene_src_genus Mus _entity_src_gen.pdbx_gene_src_gene 'RIKEN cDNA 2610101O11' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Mus musculus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 10090 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name ? _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name P030324-44 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description 'Cell-free protein synthesis (E.coli)' # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 1 1 GLY GLY A . n A 1 2 SER 2 2 2 SER SER A . n A 1 3 SER 3 3 3 SER SER A . n A 1 4 GLY 4 4 4 GLY GLY A . n A 1 5 SER 5 5 5 SER SER A . n A 1 6 SER 6 6 6 SER SER A . n A 1 7 GLY 7 7 7 GLY GLY A . n A 1 8 MET 8 8 8 MET MET A . n A 1 9 THR 9 9 9 THR THR A . n A 1 10 VAL 10 10 10 VAL VAL A . n A 1 11 GLU 11 11 11 GLU GLU A . n A 1 12 GLN 12 12 12 GLN GLN A . n A 1 13 ASN 13 13 13 ASN ASN A . n A 1 14 VAL 14 14 14 VAL VAL A . n A 1 15 LEU 15 15 15 LEU LEU A . n A 1 16 GLN 16 16 16 GLN GLN A . n A 1 17 GLN 17 17 17 GLN GLN A . n A 1 18 SER 18 18 18 SER SER A . n A 1 19 ALA 19 19 19 ALA ALA A . n A 1 20 ALA 20 20 20 ALA ALA A . n A 1 21 GLN 21 21 21 GLN GLN A . n A 1 22 LYS 22 22 22 LYS LYS A . n A 1 23 HIS 23 23 23 HIS HIS A . n A 1 24 GLN 24 24 24 GLN GLN A . n A 1 25 GLN 25 25 25 GLN GLN A . n A 1 26 THR 26 26 26 THR THR A . n A 1 27 PHE 27 27 27 PHE PHE A . n A 1 28 LEU 28 28 28 LEU LEU A . n A 1 29 ASN 29 29 29 ASN ASN A . n A 1 30 GLN 30 30 30 GLN GLN A . n A 1 31 LEU 31 31 31 LEU LEU A . n A 1 32 ARG 32 32 32 ARG ARG A . n A 1 33 GLU 33 33 33 GLU GLU A . n A 1 34 ILE 34 34 34 ILE ILE A . n A 1 35 THR 35 35 35 THR THR A . n A 1 36 GLY 36 36 36 GLY GLY A . n A 1 37 ILE 37 37 37 ILE ILE A . n A 1 38 ASN 38 38 38 ASN ASN A . n A 1 39 ASP 39 39 39 ASP ASP A . n A 1 40 ALA 40 40 40 ALA ALA A . n A 1 41 GLN 41 41 41 GLN GLN A . n A 1 42 ILE 42 42 42 ILE ILE A . n A 1 43 LEU 43 43 43 LEU LEU A . n A 1 44 GLN 44 44 44 GLN GLN A . n A 1 45 GLN 45 45 45 GLN GLN A . n A 1 46 ALA 46 46 46 ALA ALA A . n A 1 47 LEU 47 47 47 LEU LEU A . n A 1 48 LYS 48 48 48 LYS LYS A . n A 1 49 ASP 49 49 49 ASP ASP A . n A 1 50 SER 50 50 50 SER SER A . n A 1 51 ASN 51 51 51 ASN ASN A . n A 1 52 GLY 52 52 52 GLY GLY A . n A 1 53 ASN 53 53 53 ASN ASN A . n A 1 54 LEU 54 54 54 LEU LEU A . n A 1 55 GLU 55 55 55 GLU GLU A . n A 1 56 LEU 56 56 56 LEU LEU A . n A 1 57 ALA 57 57 57 ALA ALA A . n A 1 58 VAL 58 58 58 VAL VAL A . n A 1 59 ALA 59 59 59 ALA ALA A . n A 1 60 PHE 60 60 60 PHE PHE A . n A 1 61 LEU 61 61 61 LEU LEU A . n A 1 62 THR 62 62 62 THR THR A . n A 1 63 ALA 63 63 63 ALA ALA A . n A 1 64 LYS 64 64 64 LYS LYS A . n A 1 65 ASN 65 65 65 ASN ASN A . n A 1 66 ALA 66 66 66 ALA ALA A . n A 1 67 LYS 67 67 67 LYS LYS A . n A 1 68 THR 68 68 68 THR THR A . n A 1 69 PRO 69 69 69 PRO PRO A . n A 1 70 PRO 70 70 70 PRO PRO A . n A 1 71 GLN 71 71 71 GLN GLN A . n A 1 72 GLU 72 72 72 GLU GLU A . n A 1 73 GLU 73 73 73 GLU GLU A . n A 1 74 THR 74 74 74 THR THR A . n A 1 75 SER 75 75 75 SER SER A . n A 1 76 GLY 76 76 76 GLY GLY A . n A 1 77 PRO 77 77 77 PRO PRO A . n A 1 78 SER 78 78 78 SER SER A . n A 1 79 SER 79 79 79 SER SER A . n A 1 80 GLY 80 80 80 GLY GLY A . n # _cell.entry_id 1VDL _cell.length_a 1.000 _cell.length_b 1.000 _cell.length_c 1.000 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1VDL _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 # _exptl.entry_id 1VDL _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews ? _exptl_crystal.density_percent_sol ? _exptl_crystal.description ? # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type ? # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _database_PDB_matrix.entry_id 1VDL _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1VDL _struct.title 'Solution Structure of RSGI RUH-013, a UBA domain in Mouse cDNA' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1VDL _struct_keywords.pdbx_keywords 'STRUCTURAL GENOMICS, UNKNOWN FUNCTION' _struct_keywords.text 'UBA domain, Mouse cDNA, Structural Genomics, RIKEN Structural Genomics/Proteomics Initiative, RSGI, UNKNOWN FUNCTION' # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code UBP25_MOUSE _struct_ref.pdbx_db_accession P57080 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code MTVEQNVLQQSAAQKHQQTFLNQLREITGINDAQILQQALKDSNGNLELAVAFLTAKNAKTPPQEET _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1VDL _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 8 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 74 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P57080 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 67 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 8 _struct_ref_seq.pdbx_auth_seq_align_end 74 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 1VDL GLY A 1 ? UNP P57080 ? ? 'cloning artifact' 1 1 1 1VDL SER A 2 ? UNP P57080 ? ? 'cloning artifact' 2 2 1 1VDL SER A 3 ? UNP P57080 ? ? 'cloning artifact' 3 3 1 1VDL GLY A 4 ? UNP P57080 ? ? 'cloning artifact' 4 4 1 1VDL SER A 5 ? UNP P57080 ? ? 'cloning artifact' 5 5 1 1VDL SER A 6 ? UNP P57080 ? ? 'cloning artifact' 6 6 1 1VDL GLY A 7 ? UNP P57080 ? ? 'cloning artifact' 7 7 1 1VDL SER A 75 ? UNP P57080 ? ? 'cloning artifact' 75 8 1 1VDL GLY A 76 ? UNP P57080 ? ? 'cloning artifact' 76 9 1 1VDL PRO A 77 ? UNP P57080 ? ? 'cloning artifact' 77 10 1 1VDL SER A 78 ? UNP P57080 ? ? 'cloning artifact' 78 11 1 1VDL SER A 79 ? UNP P57080 ? ? 'cloning artifact' 79 12 1 1VDL GLY A 80 ? UNP P57080 ? ? 'cloning artifact' 80 13 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.pdbx_parent_biol_id ? _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 2 GLN A 24 ? ILE A 34 ? GLN A 24 ILE A 34 1 ? 11 HELX_P HELX_P2 3 ALA A 40 ? SER A 50 ? ALA A 40 SER A 50 1 ? 11 HELX_P HELX_P3 4 LEU A 54 ? THR A 62 ? LEU A 54 THR A 62 1 ? 9 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O A LEU 47 ? ? HG A SER 50 ? ? 1.49 2 1 O A VAL 58 ? ? H A THR 62 ? ? 1.51 3 1 O A GLN 44 ? ? H A LYS 48 ? ? 1.60 4 2 O A VAL 58 ? ? H A THR 62 ? ? 1.51 5 2 O A GLN 44 ? ? H A LYS 48 ? ? 1.56 6 3 O A LEU 54 ? ? H A VAL 58 ? ? 1.54 7 3 O A VAL 58 ? ? H A THR 62 ? ? 1.57 8 3 O A LEU 61 ? ? H A LYS 64 ? ? 1.58 9 3 O A GLN 44 ? ? H A LYS 48 ? ? 1.59 10 4 O A VAL 58 ? ? H A THR 62 ? ? 1.56 11 4 O A LEU 54 ? ? H A VAL 58 ? ? 1.56 12 5 O A VAL 58 ? ? H A THR 62 ? ? 1.49 13 5 O A LEU 47 ? ? HG A SER 50 ? ? 1.50 14 6 O A VAL 58 ? ? H A THR 62 ? ? 1.51 15 6 O A GLN 44 ? ? H A LYS 48 ? ? 1.56 16 7 O A VAL 58 ? ? H A THR 62 ? ? 1.50 17 7 O A GLN 44 ? ? H A LYS 48 ? ? 1.58 18 7 O A GLN 12 ? ? H A GLN 16 ? ? 1.59 19 8 O A VAL 58 ? ? H A THR 62 ? ? 1.49 20 8 O A GLN 44 ? ? H A LYS 48 ? ? 1.56 21 9 O A VAL 58 ? ? H A THR 62 ? ? 1.49 22 9 O A GLN 44 ? ? H A LYS 48 ? ? 1.53 23 10 O A VAL 58 ? ? H A THR 62 ? ? 1.47 24 10 O A SER 18 ? ? H A GLN 21 ? ? 1.59 25 11 O A LEU 54 ? ? H A VAL 58 ? ? 1.53 26 11 O A LEU 61 ? ? H A LYS 64 ? ? 1.54 27 11 O A GLN 44 ? ? H A LYS 48 ? ? 1.57 28 11 O A VAL 58 ? ? HG1 A THR 62 ? ? 1.59 29 11 O A GLN 12 ? ? H A GLN 16 ? ? 1.60 30 12 O A VAL 58 ? ? H A THR 62 ? ? 1.48 31 12 O A LEU 47 ? ? HG A SER 50 ? ? 1.50 32 12 O A GLN 44 ? ? H A LYS 48 ? ? 1.58 33 13 O A LEU 47 ? ? HG A SER 50 ? ? 1.49 34 13 O A GLN 44 ? ? H A LYS 48 ? ? 1.53 35 13 O A VAL 58 ? ? H A THR 62 ? ? 1.56 36 14 O A VAL 58 ? ? H A THR 62 ? ? 1.47 37 14 O A LEU 47 ? ? HG A SER 50 ? ? 1.49 38 14 O A GLN 44 ? ? H A LYS 48 ? ? 1.59 39 15 O A VAL 58 ? ? H A THR 62 ? ? 1.48 40 15 O A LEU 47 ? ? HG A SER 50 ? ? 1.50 41 15 O A LEU 61 ? ? H A LYS 64 ? ? 1.57 42 15 O A VAL 58 ? ? HG1 A THR 62 ? ? 1.59 43 16 O A VAL 58 ? ? H A THR 62 ? ? 1.52 44 16 O A GLN 44 ? ? H A LYS 48 ? ? 1.53 45 17 O A LEU 47 ? ? HG A SER 50 ? ? 1.51 46 17 O A VAL 58 ? ? H A THR 62 ? ? 1.55 47 17 O A GLN 44 ? ? H A LYS 48 ? ? 1.56 48 18 O A LEU 54 ? ? H A VAL 58 ? ? 1.53 49 18 O A LEU 47 ? ? HG A SER 50 ? ? 1.55 50 18 O A LEU 61 ? ? H A LYS 64 ? ? 1.56 51 18 O A GLN 44 ? ? H A LYS 48 ? ? 1.60 52 19 O A LEU 47 ? ? HG A SER 50 ? ? 1.48 53 19 O A VAL 58 ? ? H A THR 62 ? ? 1.49 54 19 O A GLN 44 ? ? H A LYS 48 ? ? 1.56 55 19 O A LEU 61 ? ? H A LYS 64 ? ? 1.57 56 19 O A VAL 58 ? ? HG1 A THR 62 ? ? 1.60 57 20 O A VAL 58 ? ? H A THR 62 ? ? 1.51 58 20 O A GLN 44 ? ? H A LYS 48 ? ? 1.59 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER A 3 ? ? 63.55 161.84 2 1 SER A 6 ? ? 64.03 144.70 3 1 MET A 8 ? ? 43.74 89.58 4 1 VAL A 10 ? ? -95.86 48.50 5 1 ASN A 13 ? ? -143.45 -47.32 6 1 SER A 18 ? ? 71.94 -66.02 7 1 ILE A 34 ? ? -39.66 -71.76 8 1 ASN A 38 ? ? -122.35 -51.57 9 1 ALA A 63 ? ? -88.46 45.21 10 1 LYS A 64 ? ? -157.42 -52.62 11 1 GLU A 73 ? ? 177.92 167.08 12 1 SER A 75 ? ? -165.19 -61.53 13 2 SER A 6 ? ? 67.17 88.45 14 2 MET A 8 ? ? -161.22 89.96 15 2 GLN A 17 ? ? -65.32 73.82 16 2 SER A 18 ? ? 169.96 -82.81 17 2 ILE A 34 ? ? -39.75 -71.81 18 2 ASN A 38 ? ? -123.00 -51.88 19 2 ALA A 63 ? ? -90.50 41.29 20 2 LYS A 64 ? ? -157.03 -47.32 21 2 SER A 75 ? ? 179.23 110.21 22 2 SER A 78 ? ? 179.70 84.75 23 2 SER A 79 ? ? 53.10 101.80 24 3 SER A 6 ? ? 60.10 107.79 25 3 GLN A 17 ? ? -49.89 173.67 26 3 SER A 18 ? ? 70.15 -70.59 27 3 ILE A 34 ? ? -39.51 -71.44 28 3 ASP A 39 ? ? -39.25 136.43 29 3 ASN A 51 ? ? 80.52 7.70 30 3 LEU A 61 ? ? -91.07 -60.59 31 3 THR A 74 ? ? 62.85 138.17 32 3 SER A 79 ? ? -177.62 -62.24 33 4 MET A 8 ? ? -179.51 -45.36 34 4 GLU A 11 ? ? 80.45 159.61 35 4 ASN A 13 ? ? -150.70 -46.78 36 4 GLN A 17 ? ? -44.00 152.05 37 4 SER A 18 ? ? 66.75 -71.91 38 4 ILE A 34 ? ? -39.67 -72.88 39 4 ILE A 37 ? ? -46.63 159.68 40 4 ASN A 38 ? ? -126.19 -51.33 41 4 GLU A 73 ? ? -168.83 113.15 42 4 THR A 74 ? ? 41.34 88.57 43 4 SER A 78 ? ? -108.32 -62.43 44 5 SER A 3 ? ? 54.56 104.56 45 5 MET A 8 ? ? -56.26 173.10 46 5 GLN A 12 ? ? -167.98 -41.63 47 5 GLN A 17 ? ? -42.39 150.24 48 5 SER A 18 ? ? 68.74 -66.61 49 5 ILE A 34 ? ? -41.21 -73.73 50 5 ILE A 37 ? ? -49.38 162.93 51 5 ASN A 38 ? ? -129.30 -50.74 52 5 LYS A 64 ? ? -108.69 -67.06 53 5 ALA A 66 ? ? 54.95 88.58 54 5 GLN A 71 ? ? 62.41 144.17 55 5 THR A 74 ? ? -173.14 66.43 56 5 SER A 78 ? ? -177.85 78.07 57 6 SER A 2 ? ? -58.74 108.41 58 6 SER A 3 ? ? -173.89 -58.94 59 6 SER A 6 ? ? -145.52 -59.77 60 6 VAL A 10 ? ? -104.12 52.08 61 6 SER A 18 ? ? 67.29 -69.72 62 6 ILE A 34 ? ? -40.40 -73.18 63 6 ASN A 38 ? ? -127.33 -51.34 64 6 ASN A 51 ? ? 81.60 12.22 65 6 ALA A 63 ? ? -86.61 48.17 66 6 LYS A 64 ? ? -154.55 -52.57 67 6 SER A 78 ? ? 177.79 134.54 68 7 SER A 6 ? ? -163.33 119.53 69 7 GLU A 11 ? ? -58.98 172.95 70 7 GLN A 12 ? ? 68.76 -65.17 71 7 GLN A 16 ? ? -39.09 -39.58 72 7 SER A 18 ? ? 74.32 -63.58 73 7 HIS A 23 ? ? -161.78 94.08 74 7 ILE A 34 ? ? -43.18 -73.78 75 7 ILE A 37 ? ? -49.25 159.90 76 7 ASN A 38 ? ? -123.49 -51.83 77 7 ALA A 63 ? ? -92.36 34.94 78 7 LYS A 64 ? ? -148.02 -63.27 79 7 ALA A 66 ? ? 63.41 108.37 80 7 SER A 75 ? ? -150.13 -62.03 81 7 SER A 78 ? ? 61.88 129.92 82 8 SER A 2 ? ? 62.57 136.50 83 8 MET A 8 ? ? 64.61 131.40 84 8 ASN A 13 ? ? -162.74 -44.25 85 8 SER A 18 ? ? 73.45 -70.18 86 8 HIS A 23 ? ? -162.60 94.15 87 8 ILE A 34 ? ? -40.27 -74.18 88 8 ILE A 37 ? ? -44.15 163.69 89 8 ASN A 38 ? ? -131.55 -51.13 90 8 ALA A 63 ? ? -93.35 34.36 91 8 LYS A 64 ? ? -144.63 -64.07 92 8 ALA A 66 ? ? 58.06 109.35 93 8 GLN A 71 ? ? 179.94 178.04 94 8 SER A 79 ? ? -179.77 -58.53 95 9 SER A 2 ? ? -170.15 133.76 96 9 MET A 8 ? ? 60.72 113.01 97 9 GLN A 12 ? ? 163.52 -45.45 98 9 GLN A 16 ? ? -90.93 33.61 99 9 SER A 18 ? ? 68.57 -67.42 100 9 ILE A 34 ? ? -40.71 -74.29 101 9 ASN A 38 ? ? -129.60 -50.38 102 9 ALA A 63 ? ? -92.06 36.70 103 9 LYS A 64 ? ? -148.65 -68.12 104 9 ALA A 66 ? ? 61.65 62.65 105 9 GLU A 73 ? ? -119.41 72.11 106 9 SER A 75 ? ? 76.92 -58.52 107 10 SER A 6 ? ? -175.02 85.32 108 10 MET A 8 ? ? -146.03 58.39 109 10 GLN A 17 ? ? -46.63 172.73 110 10 SER A 18 ? ? 69.65 -62.08 111 10 ILE A 34 ? ? -39.72 -73.21 112 10 ILE A 37 ? ? -47.84 159.92 113 10 ASN A 38 ? ? -127.06 -51.55 114 10 LYS A 64 ? ? -107.69 -61.46 115 10 ALA A 66 ? ? 56.27 88.52 116 10 GLN A 71 ? ? 59.86 152.18 117 10 THR A 74 ? ? 61.09 145.93 118 10 SER A 75 ? ? 50.80 85.21 119 11 SER A 2 ? ? 64.82 143.54 120 11 SER A 3 ? ? 62.69 99.23 121 11 MET A 8 ? ? -134.77 -45.51 122 11 VAL A 10 ? ? -110.71 57.20 123 11 GLN A 16 ? ? -39.38 -29.12 124 11 GLN A 17 ? ? -37.45 153.72 125 11 SER A 18 ? ? 71.70 -70.84 126 11 ILE A 34 ? ? -39.63 -71.73 127 11 ILE A 37 ? ? -48.84 156.54 128 11 ASN A 38 ? ? -122.55 -51.81 129 11 GLN A 71 ? ? 61.79 128.71 130 11 SER A 78 ? ? -114.67 73.58 131 12 SER A 2 ? ? 46.82 90.04 132 12 VAL A 10 ? ? -148.61 50.10 133 12 SER A 18 ? ? 72.48 -66.88 134 12 HIS A 23 ? ? -162.85 91.96 135 12 ILE A 34 ? ? -40.11 -72.53 136 13 SER A 2 ? ? -161.62 91.60 137 13 SER A 6 ? ? 44.58 93.45 138 13 MET A 8 ? ? 63.41 140.10 139 13 GLN A 17 ? ? -38.86 142.76 140 13 SER A 18 ? ? 71.46 -62.32 141 13 HIS A 23 ? ? -162.34 91.80 142 13 ILE A 34 ? ? -41.55 -74.11 143 13 ASN A 38 ? ? -129.59 -50.36 144 13 ALA A 63 ? ? -92.49 36.05 145 13 LYS A 64 ? ? -149.49 -50.51 146 13 ALA A 66 ? ? 179.10 176.29 147 13 GLN A 71 ? ? 54.48 174.56 148 13 SER A 79 ? ? 62.02 99.46 149 14 SER A 2 ? ? -174.54 149.75 150 14 SER A 6 ? ? -179.71 134.02 151 14 MET A 8 ? ? -178.09 -54.17 152 14 GLN A 12 ? ? 79.17 -56.27 153 14 SER A 18 ? ? -175.47 -76.07 154 14 ILE A 34 ? ? -40.19 -71.98 155 14 ASN A 38 ? ? -123.07 -52.00 156 14 ALA A 63 ? ? -89.91 41.11 157 14 LYS A 64 ? ? -147.80 -55.41 158 14 ALA A 66 ? ? 63.52 140.45 159 14 GLN A 71 ? ? 36.22 -153.79 160 14 SER A 75 ? ? 71.06 -68.63 161 15 SER A 2 ? ? -176.55 125.06 162 15 MET A 8 ? ? -161.40 -44.69 163 15 GLN A 12 ? ? -147.57 -45.34 164 15 GLN A 16 ? ? -39.47 -38.17 165 15 SER A 18 ? ? 69.23 -70.49 166 15 ILE A 34 ? ? -45.34 -74.75 167 15 ILE A 37 ? ? -48.12 161.39 168 15 ASN A 38 ? ? -126.03 -51.60 169 15 LYS A 64 ? ? -104.24 -67.47 170 15 ALA A 66 ? ? 56.67 88.67 171 15 GLN A 71 ? ? 60.84 148.48 172 15 GLU A 73 ? ? -126.13 -65.10 173 15 SER A 75 ? ? 45.52 93.22 174 16 SER A 6 ? ? 43.72 80.89 175 16 MET A 8 ? ? 48.73 93.41 176 16 GLN A 16 ? ? -92.97 31.03 177 16 SER A 18 ? ? -164.87 -70.61 178 16 ASN A 38 ? ? -129.80 -50.10 179 16 ALA A 66 ? ? 179.76 178.17 180 16 GLN A 71 ? ? 64.27 135.02 181 16 SER A 75 ? ? -177.66 102.18 182 17 MET A 8 ? ? 59.19 107.25 183 17 GLN A 12 ? ? 83.23 -51.63 184 17 SER A 18 ? ? 72.95 -70.61 185 17 HIS A 23 ? ? -88.65 -80.79 186 17 ILE A 34 ? ? -40.65 -71.41 187 17 ALA A 63 ? ? -96.80 53.68 188 17 LYS A 64 ? ? -175.42 -37.81 189 17 ALA A 66 ? ? 172.98 -172.68 190 17 GLN A 71 ? ? 42.65 -162.85 191 17 GLU A 73 ? ? -174.11 75.95 192 17 THR A 74 ? ? -136.76 -63.76 193 17 SER A 75 ? ? -167.55 -59.00 194 18 SER A 2 ? ? -172.51 140.58 195 18 SER A 3 ? ? -165.04 -58.49 196 18 MET A 8 ? ? 38.30 82.41 197 18 GLN A 12 ? ? 70.27 -59.86 198 18 SER A 18 ? ? 67.13 -70.73 199 18 ILE A 34 ? ? -41.56 -70.75 200 18 ILE A 37 ? ? -45.30 158.64 201 18 ASN A 38 ? ? -125.89 -51.70 202 18 GLU A 73 ? ? 179.83 92.35 203 18 SER A 79 ? ? 63.77 107.21 204 19 SER A 2 ? ? 60.62 149.51 205 19 SER A 6 ? ? 65.60 155.94 206 19 ASN A 13 ? ? -132.52 -46.33 207 19 GLN A 17 ? ? -48.16 155.78 208 19 SER A 18 ? ? 67.56 -70.44 209 19 ILE A 34 ? ? -39.42 -71.40 210 19 ASN A 38 ? ? -121.18 -52.38 211 19 LYS A 64 ? ? -102.79 -62.61 212 19 SER A 75 ? ? -166.30 84.82 213 19 SER A 79 ? ? -172.04 120.58 214 20 SER A 3 ? ? 44.25 85.78 215 20 MET A 8 ? ? 179.57 96.68 216 20 GLU A 11 ? ? 88.02 -5.47 217 20 GLN A 16 ? ? -88.93 32.94 218 20 SER A 18 ? ? 69.99 -71.26 219 20 ILE A 34 ? ? -43.51 -76.13 220 20 ILE A 37 ? ? -42.94 163.98 221 20 ASN A 38 ? ? -131.51 -51.58 222 20 ASP A 39 ? ? -42.01 158.15 223 20 ALA A 63 ? ? -88.94 42.57 224 20 LYS A 64 ? ? -152.56 -60.55 # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name ? _pdbx_SG_project.full_name_of_center 'RIKEN Structural Genomics/Proteomics Initiative' _pdbx_SG_project.initial_of_center RSGI # _pdbx_nmr_ensemble.entry_id 1VDL _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the least restraint violations, structures with the lowest energy, target function' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '0.3mM UBA domain U-15N, 13C; 20mM phosphate buffer (pH 6.0); 100mM NaCl; 1mM DTT/0.02% NaN3; 90% H2O, 10% D2O' _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pH 6.0 _pdbx_nmr_exptl_sample_conditions.ionic_strength '120mM NaCl' _pdbx_nmr_exptl_sample_conditions.pressure_units ? _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type 1 1 1 3D_13C-separated_NOESY 2 1 1 3D_15N-separated_NOESY # _pdbx_nmr_refine.entry_id 1VDL _pdbx_nmr_refine.method 'torsion angle dynamics' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # loop_ _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.classification _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal XwinNMR 2.6 collection Bruker 1 NMRPipe 20020425 processing 'Delaglio, F.' 2 NMRView 5.0.4 'data analysis' 'Johnson, B. A.' 3 KUJIRA 0.8972 'data analysis' 'Kobayashi N.' 4 CYANA 1.0.7 'structure solution' 'Guentert, P.' 5 CYANA 1.0.7 refinement 'Guentert, P.' 6 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 GLN N N N N 74 GLN CA C N S 75 GLN C C N N 76 GLN O O N N 77 GLN CB C N N 78 GLN CG C N N 79 GLN CD C N N 80 GLN OE1 O N N 81 GLN NE2 N N N 82 GLN OXT O N N 83 GLN H H N N 84 GLN H2 H N N 85 GLN HA H N N 86 GLN HB2 H N N 87 GLN HB3 H N N 88 GLN HG2 H N N 89 GLN HG3 H N N 90 GLN HE21 H N N 91 GLN HE22 H N N 92 GLN HXT H N N 93 GLU N N N N 94 GLU CA C N S 95 GLU C C N N 96 GLU O O N N 97 GLU CB C N N 98 GLU CG C N N 99 GLU CD C N N 100 GLU OE1 O N N 101 GLU OE2 O N N 102 GLU OXT O N N 103 GLU H H N N 104 GLU H2 H N N 105 GLU HA H N N 106 GLU HB2 H N N 107 GLU HB3 H N N 108 GLU HG2 H N N 109 GLU HG3 H N N 110 GLU HE2 H N N 111 GLU HXT H N N 112 GLY N N N N 113 GLY CA C N N 114 GLY C C N N 115 GLY O O N N 116 GLY OXT O N N 117 GLY H H N N 118 GLY H2 H N N 119 GLY HA2 H N N 120 GLY HA3 H N N 121 GLY HXT H N N 122 HIS N N N N 123 HIS CA C N S 124 HIS C C N N 125 HIS O O N N 126 HIS CB C N N 127 HIS CG C Y N 128 HIS ND1 N Y N 129 HIS CD2 C Y N 130 HIS CE1 C Y N 131 HIS NE2 N Y N 132 HIS OXT O N N 133 HIS H H N N 134 HIS H2 H N N 135 HIS HA H N N 136 HIS HB2 H N N 137 HIS HB3 H N N 138 HIS HD1 H N N 139 HIS HD2 H N N 140 HIS HE1 H N N 141 HIS HE2 H N N 142 HIS HXT H N N 143 ILE N N N N 144 ILE CA C N S 145 ILE C C N N 146 ILE O O N N 147 ILE CB C N S 148 ILE CG1 C N N 149 ILE CG2 C N N 150 ILE CD1 C N N 151 ILE OXT O N N 152 ILE H H N N 153 ILE H2 H N N 154 ILE HA H N N 155 ILE HB H N N 156 ILE HG12 H N N 157 ILE HG13 H N N 158 ILE HG21 H N N 159 ILE HG22 H N N 160 ILE HG23 H N N 161 ILE HD11 H N N 162 ILE HD12 H N N 163 ILE HD13 H N N 164 ILE HXT H N N 165 LEU N N N N 166 LEU CA C N S 167 LEU C C N N 168 LEU O O N N 169 LEU CB C N N 170 LEU CG C N N 171 LEU CD1 C N N 172 LEU CD2 C N N 173 LEU OXT O N N 174 LEU H H N N 175 LEU H2 H N N 176 LEU HA H N N 177 LEU HB2 H N N 178 LEU HB3 H N N 179 LEU HG H N N 180 LEU HD11 H N N 181 LEU HD12 H N N 182 LEU HD13 H N N 183 LEU HD21 H N N 184 LEU HD22 H N N 185 LEU HD23 H N N 186 LEU HXT H N N 187 LYS N N N N 188 LYS CA C N S 189 LYS C C N N 190 LYS O O N N 191 LYS CB C N N 192 LYS CG C N N 193 LYS CD C N N 194 LYS CE C N N 195 LYS NZ N N N 196 LYS OXT O N N 197 LYS H H N N 198 LYS H2 H N N 199 LYS HA H N N 200 LYS HB2 H N N 201 LYS HB3 H N N 202 LYS HG2 H N N 203 LYS HG3 H N N 204 LYS HD2 H N N 205 LYS HD3 H N N 206 LYS HE2 H N N 207 LYS HE3 H N N 208 LYS HZ1 H N N 209 LYS HZ2 H N N 210 LYS HZ3 H N N 211 LYS HXT H N N 212 MET N N N N 213 MET CA C N S 214 MET C C N N 215 MET O O N N 216 MET CB C N N 217 MET CG C N N 218 MET SD S N N 219 MET CE C N N 220 MET OXT O N N 221 MET H H N N 222 MET H2 H N N 223 MET HA H N N 224 MET HB2 H N N 225 MET HB3 H N N 226 MET HG2 H N N 227 MET HG3 H N N 228 MET HE1 H N N 229 MET HE2 H N N 230 MET HE3 H N N 231 MET HXT H N N 232 PHE N N N N 233 PHE CA C N S 234 PHE C C N N 235 PHE O O N N 236 PHE CB C N N 237 PHE CG C Y N 238 PHE CD1 C Y N 239 PHE CD2 C Y N 240 PHE CE1 C Y N 241 PHE CE2 C Y N 242 PHE CZ C Y N 243 PHE OXT O N N 244 PHE H H N N 245 PHE H2 H N N 246 PHE HA H N N 247 PHE HB2 H N N 248 PHE HB3 H N N 249 PHE HD1 H N N 250 PHE HD2 H N N 251 PHE HE1 H N N 252 PHE HE2 H N N 253 PHE HZ H N N 254 PHE HXT H N N 255 PRO N N N N 256 PRO CA C N S 257 PRO C C N N 258 PRO O O N N 259 PRO CB C N N 260 PRO CG C N N 261 PRO CD C N N 262 PRO OXT O N N 263 PRO H H N N 264 PRO HA H N N 265 PRO HB2 H N N 266 PRO HB3 H N N 267 PRO HG2 H N N 268 PRO HG3 H N N 269 PRO HD2 H N N 270 PRO HD3 H N N 271 PRO HXT H N N 272 SER N N N N 273 SER CA C N S 274 SER C C N N 275 SER O O N N 276 SER CB C N N 277 SER OG O N N 278 SER OXT O N N 279 SER H H N N 280 SER H2 H N N 281 SER HA H N N 282 SER HB2 H N N 283 SER HB3 H N N 284 SER HG H N N 285 SER HXT H N N 286 THR N N N N 287 THR CA C N S 288 THR C C N N 289 THR O O N N 290 THR CB C N R 291 THR OG1 O N N 292 THR CG2 C N N 293 THR OXT O N N 294 THR H H N N 295 THR H2 H N N 296 THR HA H N N 297 THR HB H N N 298 THR HG1 H N N 299 THR HG21 H N N 300 THR HG22 H N N 301 THR HG23 H N N 302 THR HXT H N N 303 VAL N N N N 304 VAL CA C N S 305 VAL C C N N 306 VAL O O N N 307 VAL CB C N N 308 VAL CG1 C N N 309 VAL CG2 C N N 310 VAL OXT O N N 311 VAL H H N N 312 VAL H2 H N N 313 VAL HA H N N 314 VAL HB H N N 315 VAL HG11 H N N 316 VAL HG12 H N N 317 VAL HG13 H N N 318 VAL HG21 H N N 319 VAL HG22 H N N 320 VAL HG23 H N N 321 VAL HXT H N N 322 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 GLN N CA sing N N 70 GLN N H sing N N 71 GLN N H2 sing N N 72 GLN CA C sing N N 73 GLN CA CB sing N N 74 GLN CA HA sing N N 75 GLN C O doub N N 76 GLN C OXT sing N N 77 GLN CB CG sing N N 78 GLN CB HB2 sing N N 79 GLN CB HB3 sing N N 80 GLN CG CD sing N N 81 GLN CG HG2 sing N N 82 GLN CG HG3 sing N N 83 GLN CD OE1 doub N N 84 GLN CD NE2 sing N N 85 GLN NE2 HE21 sing N N 86 GLN NE2 HE22 sing N N 87 GLN OXT HXT sing N N 88 GLU N CA sing N N 89 GLU N H sing N N 90 GLU N H2 sing N N 91 GLU CA C sing N N 92 GLU CA CB sing N N 93 GLU CA HA sing N N 94 GLU C O doub N N 95 GLU C OXT sing N N 96 GLU CB CG sing N N 97 GLU CB HB2 sing N N 98 GLU CB HB3 sing N N 99 GLU CG CD sing N N 100 GLU CG HG2 sing N N 101 GLU CG HG3 sing N N 102 GLU CD OE1 doub N N 103 GLU CD OE2 sing N N 104 GLU OE2 HE2 sing N N 105 GLU OXT HXT sing N N 106 GLY N CA sing N N 107 GLY N H sing N N 108 GLY N H2 sing N N 109 GLY CA C sing N N 110 GLY CA HA2 sing N N 111 GLY CA HA3 sing N N 112 GLY C O doub N N 113 GLY C OXT sing N N 114 GLY OXT HXT sing N N 115 HIS N CA sing N N 116 HIS N H sing N N 117 HIS N H2 sing N N 118 HIS CA C sing N N 119 HIS CA CB sing N N 120 HIS CA HA sing N N 121 HIS C O doub N N 122 HIS C OXT sing N N 123 HIS CB CG sing N N 124 HIS CB HB2 sing N N 125 HIS CB HB3 sing N N 126 HIS CG ND1 sing Y N 127 HIS CG CD2 doub Y N 128 HIS ND1 CE1 doub Y N 129 HIS ND1 HD1 sing N N 130 HIS CD2 NE2 sing Y N 131 HIS CD2 HD2 sing N N 132 HIS CE1 NE2 sing Y N 133 HIS CE1 HE1 sing N N 134 HIS NE2 HE2 sing N N 135 HIS OXT HXT sing N N 136 ILE N CA sing N N 137 ILE N H sing N N 138 ILE N H2 sing N N 139 ILE CA C sing N N 140 ILE CA CB sing N N 141 ILE CA HA sing N N 142 ILE C O doub N N 143 ILE C OXT sing N N 144 ILE CB CG1 sing N N 145 ILE CB CG2 sing N N 146 ILE CB HB sing N N 147 ILE CG1 CD1 sing N N 148 ILE CG1 HG12 sing N N 149 ILE CG1 HG13 sing N N 150 ILE CG2 HG21 sing N N 151 ILE CG2 HG22 sing N N 152 ILE CG2 HG23 sing N N 153 ILE CD1 HD11 sing N N 154 ILE CD1 HD12 sing N N 155 ILE CD1 HD13 sing N N 156 ILE OXT HXT sing N N 157 LEU N CA sing N N 158 LEU N H sing N N 159 LEU N H2 sing N N 160 LEU CA C sing N N 161 LEU CA CB sing N N 162 LEU CA HA sing N N 163 LEU C O doub N N 164 LEU C OXT sing N N 165 LEU CB CG sing N N 166 LEU CB HB2 sing N N 167 LEU CB HB3 sing N N 168 LEU CG CD1 sing N N 169 LEU CG CD2 sing N N 170 LEU CG HG sing N N 171 LEU CD1 HD11 sing N N 172 LEU CD1 HD12 sing N N 173 LEU CD1 HD13 sing N N 174 LEU CD2 HD21 sing N N 175 LEU CD2 HD22 sing N N 176 LEU CD2 HD23 sing N N 177 LEU OXT HXT sing N N 178 LYS N CA sing N N 179 LYS N H sing N N 180 LYS N H2 sing N N 181 LYS CA C sing N N 182 LYS CA CB sing N N 183 LYS CA HA sing N N 184 LYS C O doub N N 185 LYS C OXT sing N N 186 LYS CB CG sing N N 187 LYS CB HB2 sing N N 188 LYS CB HB3 sing N N 189 LYS CG CD sing N N 190 LYS CG HG2 sing N N 191 LYS CG HG3 sing N N 192 LYS CD CE sing N N 193 LYS CD HD2 sing N N 194 LYS CD HD3 sing N N 195 LYS CE NZ sing N N 196 LYS CE HE2 sing N N 197 LYS CE HE3 sing N N 198 LYS NZ HZ1 sing N N 199 LYS NZ HZ2 sing N N 200 LYS NZ HZ3 sing N N 201 LYS OXT HXT sing N N 202 MET N CA sing N N 203 MET N H sing N N 204 MET N H2 sing N N 205 MET CA C sing N N 206 MET CA CB sing N N 207 MET CA HA sing N N 208 MET C O doub N N 209 MET C OXT sing N N 210 MET CB CG sing N N 211 MET CB HB2 sing N N 212 MET CB HB3 sing N N 213 MET CG SD sing N N 214 MET CG HG2 sing N N 215 MET CG HG3 sing N N 216 MET SD CE sing N N 217 MET CE HE1 sing N N 218 MET CE HE2 sing N N 219 MET CE HE3 sing N N 220 MET OXT HXT sing N N 221 PHE N CA sing N N 222 PHE N H sing N N 223 PHE N H2 sing N N 224 PHE CA C sing N N 225 PHE CA CB sing N N 226 PHE CA HA sing N N 227 PHE C O doub N N 228 PHE C OXT sing N N 229 PHE CB CG sing N N 230 PHE CB HB2 sing N N 231 PHE CB HB3 sing N N 232 PHE CG CD1 doub Y N 233 PHE CG CD2 sing Y N 234 PHE CD1 CE1 sing Y N 235 PHE CD1 HD1 sing N N 236 PHE CD2 CE2 doub Y N 237 PHE CD2 HD2 sing N N 238 PHE CE1 CZ doub Y N 239 PHE CE1 HE1 sing N N 240 PHE CE2 CZ sing Y N 241 PHE CE2 HE2 sing N N 242 PHE CZ HZ sing N N 243 PHE OXT HXT sing N N 244 PRO N CA sing N N 245 PRO N CD sing N N 246 PRO N H sing N N 247 PRO CA C sing N N 248 PRO CA CB sing N N 249 PRO CA HA sing N N 250 PRO C O doub N N 251 PRO C OXT sing N N 252 PRO CB CG sing N N 253 PRO CB HB2 sing N N 254 PRO CB HB3 sing N N 255 PRO CG CD sing N N 256 PRO CG HG2 sing N N 257 PRO CG HG3 sing N N 258 PRO CD HD2 sing N N 259 PRO CD HD3 sing N N 260 PRO OXT HXT sing N N 261 SER N CA sing N N 262 SER N H sing N N 263 SER N H2 sing N N 264 SER CA C sing N N 265 SER CA CB sing N N 266 SER CA HA sing N N 267 SER C O doub N N 268 SER C OXT sing N N 269 SER CB OG sing N N 270 SER CB HB2 sing N N 271 SER CB HB3 sing N N 272 SER OG HG sing N N 273 SER OXT HXT sing N N 274 THR N CA sing N N 275 THR N H sing N N 276 THR N H2 sing N N 277 THR CA C sing N N 278 THR CA CB sing N N 279 THR CA HA sing N N 280 THR C O doub N N 281 THR C OXT sing N N 282 THR CB OG1 sing N N 283 THR CB CG2 sing N N 284 THR CB HB sing N N 285 THR OG1 HG1 sing N N 286 THR CG2 HG21 sing N N 287 THR CG2 HG22 sing N N 288 THR CG2 HG23 sing N N 289 THR OXT HXT sing N N 290 VAL N CA sing N N 291 VAL N H sing N N 292 VAL N H2 sing N N 293 VAL CA C sing N N 294 VAL CA CB sing N N 295 VAL CA HA sing N N 296 VAL C O doub N N 297 VAL C OXT sing N N 298 VAL CB CG1 sing N N 299 VAL CB CG2 sing N N 300 VAL CB HB sing N N 301 VAL CG1 HG11 sing N N 302 VAL CG1 HG12 sing N N 303 VAL CG1 HG13 sing N N 304 VAL CG2 HG21 sing N N 305 VAL CG2 HG22 sing N N 306 VAL CG2 HG23 sing N N 307 VAL OXT HXT sing N N 308 # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.type ? _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.model AVANCE _pdbx_nmr_spectrometer.field_strength 800 # _atom_sites.entry_id 1VDL _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_