data_1VFC # _entry.id 1VFC # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.383 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1VFC pdb_00001vfc 10.2210/pdb1vfc/pdb RCSB RCSB006555 ? ? WWPDB D_1000006555 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2005-05-17 2 'Structure model' 1 1 2008-04-27 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-03-02 5 'Structure model' 1 4 2023-12-27 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 5 'Structure model' 'Data collection' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_nmr_software 3 4 'Structure model' pdbx_nmr_spectrometer 4 4 'Structure model' pdbx_struct_assembly 5 4 'Structure model' pdbx_struct_oper_list 6 5 'Structure model' chem_comp_atom 7 5 'Structure model' chem_comp_bond # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_nmr_software.name' 4 4 'Structure model' '_pdbx_nmr_spectrometer.model' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1VFC _pdbx_database_status.recvd_initial_deposition_date 2004-04-12 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 1VF9 _pdbx_database_related.details 'Human Trf2' _pdbx_database_related.content_type unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Nishimura, Y.' 1 'Hanaoka, S.' 2 # _citation.id primary _citation.title 'Comparison between TRF2 and TRF1 of their telomeric DNA-bound structures and DNA-binding activities' _citation.journal_abbrev 'Protein Sci.' _citation.journal_volume 14 _citation.page_first 119 _citation.page_last 130 _citation.year 2005 _citation.journal_id_ASTM PRCIEI _citation.country US _citation.journal_id_ISSN 0961-8368 _citation.journal_id_CSD 0795 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 15608118 _citation.pdbx_database_id_DOI 10.1110/ps.04983705 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Hanaoka, S.' 1 ? primary 'Nagadoi, A.' 2 ? primary 'Nishimura, Y.' 3 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'Short G-rich strand' 4102.667 1 ? ? ? ? 2 polymer syn 'Short C-rich starnd' 3840.528 1 ? ? ? ? 3 polymer man 'Telomeric repeat binding factor 2' 7420.466 1 ? ? 'DNA BINDING DOMAIN' ? # _entity_name_com.entity_id 3 _entity_name_com.name 'TRF2, TTAGGG repeat binding factor 2, Telomeric DNA binding protein' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no no '(DG)(DT)(DT)(DA)(DG)(DG)(DG)(DT)(DT)(DA)(DG)(DG)(DG)' GTTAGGGTTAGGG B ? 2 polydeoxyribonucleotide no no '(DC)(DC)(DC)(DT)(DA)(DA)(DC)(DC)(DC)(DT)(DA)(DA)(DC)' CCCTAACCCTAAC C ? 3 'polypeptide(L)' no no EDSTTNITKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGMN EDSTTNITKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGMN A ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DG n 1 2 DT n 1 3 DT n 1 4 DA n 1 5 DG n 1 6 DG n 1 7 DG n 1 8 DT n 1 9 DT n 1 10 DA n 1 11 DG n 1 12 DG n 1 13 DG n 2 1 DC n 2 2 DC n 2 3 DC n 2 4 DT n 2 5 DA n 2 6 DA n 2 7 DC n 2 8 DC n 2 9 DC n 2 10 DT n 2 11 DA n 2 12 DA n 2 13 DC n 3 1 GLU n 3 2 ASP n 3 3 SER n 3 4 THR n 3 5 THR n 3 6 ASN n 3 7 ILE n 3 8 THR n 3 9 LYS n 3 10 LYS n 3 11 GLN n 3 12 LYS n 3 13 TRP n 3 14 THR n 3 15 VAL n 3 16 GLU n 3 17 GLU n 3 18 SER n 3 19 GLU n 3 20 TRP n 3 21 VAL n 3 22 LYS n 3 23 ALA n 3 24 GLY n 3 25 VAL n 3 26 GLN n 3 27 LYS n 3 28 TYR n 3 29 GLY n 3 30 GLU n 3 31 GLY n 3 32 ASN n 3 33 TRP n 3 34 ALA n 3 35 ALA n 3 36 ILE n 3 37 SER n 3 38 LYS n 3 39 ASN n 3 40 TYR n 3 41 PRO n 3 42 PHE n 3 43 VAL n 3 44 ASN n 3 45 ARG n 3 46 THR n 3 47 ALA n 3 48 VAL n 3 49 MET n 3 50 ILE n 3 51 LYS n 3 52 ASP n 3 53 ARG n 3 54 TRP n 3 55 ARG n 3 56 THR n 3 57 MET n 3 58 LYS n 3 59 ARG n 3 60 LEU n 3 61 GLY n 3 62 MET n 3 63 ASN n # _entity_src_gen.entity_id 3 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET23b _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 1 1 sample ? ? ? ? ? 'This sequence occurs naturally in humans.' 2 1 sample ? ? ? ? ? 'This sequence occurs naturally in humans.' # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DG 1 1 1 DG GUA B . n A 1 2 DT 2 2 2 DT THY B . n A 1 3 DT 3 3 3 DT THY B . n A 1 4 DA 4 4 4 DA ADE B . n A 1 5 DG 5 5 5 DG GUA B . n A 1 6 DG 6 6 6 DG GUA B . n A 1 7 DG 7 7 7 DG GUA B . n A 1 8 DT 8 8 8 DT THY B . n A 1 9 DT 9 9 9 DT THY B . n A 1 10 DA 10 10 10 DA ADE B . n A 1 11 DG 11 11 11 DG GUA B . n A 1 12 DG 12 12 12 DG GUA B . n A 1 13 DG 13 13 13 DG GUA B . n B 2 1 DC 1 14 14 DC CYT C . n B 2 2 DC 2 15 15 DC CYT C . n B 2 3 DC 3 16 16 DC CYT C . n B 2 4 DT 4 17 17 DT THY C . n B 2 5 DA 5 18 18 DA ADE C . n B 2 6 DA 6 19 19 DA ADE C . n B 2 7 DC 7 20 20 DC CYT C . n B 2 8 DC 8 21 21 DC CYT C . n B 2 9 DC 9 22 22 DC CYT C . n B 2 10 DT 10 23 23 DT THY C . n B 2 11 DA 11 24 24 DA ADE C . n B 2 12 DA 12 25 25 DA ADE C . n B 2 13 DC 13 26 26 DC CYT C . n C 3 1 GLU 1 438 438 GLU GLU A . n C 3 2 ASP 2 439 439 ASP ASP A . n C 3 3 SER 3 440 440 SER SER A . n C 3 4 THR 4 441 441 THR THR A . n C 3 5 THR 5 442 442 THR THR A . n C 3 6 ASN 6 443 443 ASN ASN A . n C 3 7 ILE 7 444 444 ILE ILE A . n C 3 8 THR 8 445 445 THR THR A . n C 3 9 LYS 9 446 446 LYS LYS A . n C 3 10 LYS 10 447 447 LYS LYS A . n C 3 11 GLN 11 448 448 GLN GLN A . n C 3 12 LYS 12 449 449 LYS LYS A . n C 3 13 TRP 13 450 450 TRP TRP A . n C 3 14 THR 14 451 451 THR THR A . n C 3 15 VAL 15 452 452 VAL VAL A . n C 3 16 GLU 16 453 453 GLU GLU A . n C 3 17 GLU 17 454 454 GLU GLU A . n C 3 18 SER 18 455 455 SER SER A . n C 3 19 GLU 19 456 456 GLU GLU A . n C 3 20 TRP 20 457 457 TRP TRP A . n C 3 21 VAL 21 458 458 VAL VAL A . n C 3 22 LYS 22 459 459 LYS LYS A . n C 3 23 ALA 23 460 460 ALA ALA A . n C 3 24 GLY 24 461 461 GLY GLY A . n C 3 25 VAL 25 462 462 VAL VAL A . n C 3 26 GLN 26 463 463 GLN GLU A . n C 3 27 LYS 27 464 464 LYS LYS A . n C 3 28 TYR 28 465 465 TYR TYR A . n C 3 29 GLY 29 466 466 GLY GLY A . n C 3 30 GLU 30 467 467 GLU GLU A . n C 3 31 GLY 31 468 468 GLY GLY A . n C 3 32 ASN 32 469 469 ASN ASN A . n C 3 33 TRP 33 470 470 TRP TRP A . n C 3 34 ALA 34 471 471 ALA ALA A . n C 3 35 ALA 35 472 472 ALA ALA A . n C 3 36 ILE 36 473 473 ILE ILE A . n C 3 37 SER 37 474 474 SER SER A . n C 3 38 LYS 38 475 475 LYS LYS A . n C 3 39 ASN 39 476 476 ASN ASN A . n C 3 40 TYR 40 477 477 TYR TYR A . n C 3 41 PRO 41 478 478 PRO PRO A . n C 3 42 PHE 42 479 479 PHE PHE A . n C 3 43 VAL 43 480 480 VAL VAL A . n C 3 44 ASN 44 481 481 ASN ASN A . n C 3 45 ARG 45 482 482 ARG ARG A . n C 3 46 THR 46 483 483 THR THR A . n C 3 47 ALA 47 484 484 ALA ALA A . n C 3 48 VAL 48 485 485 VAL VAL A . n C 3 49 MET 49 486 486 MET MET A . n C 3 50 ILE 50 487 487 ILE ILE A . n C 3 51 LYS 51 488 488 LYS LYS A . n C 3 52 ASP 52 489 489 ASP ASP A . n C 3 53 ARG 53 490 490 ARG ARG A . n C 3 54 TRP 54 491 491 TRP TRP A . n C 3 55 ARG 55 492 492 ARG ARG A . n C 3 56 THR 56 493 493 THR THR A . n C 3 57 MET 57 494 494 MET MET A . n C 3 58 LYS 58 495 495 LYS LYS A . n C 3 59 ARG 59 496 496 ARG ARG A . n C 3 60 LEU 60 497 497 LEU LEU A . n C 3 61 GLY 61 498 498 GLY GLY A . n C 3 62 MET 62 499 499 MET MET A . n C 3 63 ASN 63 500 500 ASN ASN A . n # _exptl.entry_id 1VFC _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews ? _exptl_crystal.density_percent_sol ? _exptl_crystal.description ? # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type ? # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _database_PDB_matrix.entry_id 1VFC _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1VFC _struct.title 'Solution Structure Of The DNA Complex Of Human Trf2' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1VFC _struct_keywords.pdbx_keywords 'STRUCTURAL PROTEIN/DNA' _struct_keywords.text 'Myb, helix-turn-helix, telomere, protein-DNA complex, STRUCTURAL PROTEIN-DNA COMPLEX' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP TERF2_HUMAN Q15554 3 EDSTTNITKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGMN 438 ? 2 PDB 1VFC 1VFC 1 ? ? ? 3 PDB 1VFC 1VFC 2 ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1VFC A 1 ? 63 ? Q15554 438 ? 500 ? 438 500 2 2 1VFC B 1 ? 13 ? 1VFC 1 ? 13 ? 1 13 3 3 1VFC C 1 ? 13 ? 1VFC 14 ? 26 ? 14 26 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 THR C 14 ? TYR C 28 ? THR A 451 TYR A 465 1 ? 15 HELX_P HELX_P2 2 ASN C 32 ? TYR C 40 ? ASN A 469 TYR A 477 1 ? 9 HELX_P HELX_P3 3 THR C 46 ? LEU C 60 ? THR A 483 LEU A 497 1 ? 15 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A DG 1 N1 ? ? ? 1_555 B DC 13 N3 ? ? B DG 1 C DC 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DG 1 N2 ? ? ? 1_555 B DC 13 O2 ? ? B DG 1 C DC 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DG 1 O6 ? ? ? 1_555 B DC 13 N4 ? ? B DG 1 C DC 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DT 2 N3 ? ? ? 1_555 B DA 12 N1 ? ? B DT 2 C DA 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DT 2 O4 ? ? ? 1_555 B DA 12 N6 ? ? B DT 2 C DA 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DT 3 N3 ? ? ? 1_555 B DA 11 N1 ? ? B DT 3 C DA 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DT 3 O4 ? ? ? 1_555 B DA 11 N6 ? ? B DT 3 C DA 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DA 4 N1 ? ? ? 1_555 B DT 10 N3 ? ? B DA 4 C DT 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DA 4 N6 ? ? ? 1_555 B DT 10 O4 ? ? B DA 4 C DT 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DG 5 N1 ? ? ? 1_555 B DC 9 N3 ? ? B DG 5 C DC 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DG 5 N2 ? ? ? 1_555 B DC 9 O2 ? ? B DG 5 C DC 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DG 5 O6 ? ? ? 1_555 B DC 9 N4 ? ? B DG 5 C DC 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DG 6 N1 ? ? ? 1_555 B DC 8 N3 ? ? B DG 6 C DC 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DG 6 N2 ? ? ? 1_555 B DC 8 O2 ? ? B DG 6 C DC 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DG 6 O6 ? ? ? 1_555 B DC 8 N4 ? ? B DG 6 C DC 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DG 7 N1 ? ? ? 1_555 B DC 7 N3 ? ? B DG 7 C DC 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DG 7 N2 ? ? ? 1_555 B DC 7 O2 ? ? B DG 7 C DC 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DG 7 O6 ? ? ? 1_555 B DC 7 N4 ? ? B DG 7 C DC 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DT 8 N3 ? ? ? 1_555 B DA 6 N1 ? ? B DT 8 C DA 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DT 8 O4 ? ? ? 1_555 B DA 6 N6 ? ? B DT 8 C DA 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DT 9 N3 ? ? ? 1_555 B DA 5 N1 ? ? B DT 9 C DA 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DT 9 O4 ? ? ? 1_555 B DA 5 N6 ? ? B DT 9 C DA 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DA 10 N1 ? ? ? 1_555 B DT 4 N3 ? ? B DA 10 C DT 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DA 10 N6 ? ? ? 1_555 B DT 4 O4 ? ? B DA 10 C DT 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DG 11 N1 ? ? ? 1_555 B DC 3 N3 ? ? B DG 11 C DC 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DG 11 N2 ? ? ? 1_555 B DC 3 O2 ? ? B DG 11 C DC 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A DG 11 O6 ? ? ? 1_555 B DC 3 N4 ? ? B DG 11 C DC 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A DG 12 N1 ? ? ? 1_555 B DC 2 N3 ? ? B DG 12 C DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A DG 12 N2 ? ? ? 1_555 B DC 2 O2 ? ? B DG 12 C DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A DG 12 O6 ? ? ? 1_555 B DC 2 N4 ? ? B DG 12 C DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A DG 13 N1 ? ? ? 1_555 B DC 1 N3 ? ? B DG 13 C DC 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A DG 13 N2 ? ? ? 1_555 B DC 1 O2 ? ? B DG 13 C DC 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A DG 13 O6 ? ? ? 1_555 B DC 1 N4 ? ? B DG 13 C DC 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASP A 439 ? ? 59.82 108.77 2 1 THR A 441 ? ? -141.38 -77.32 3 1 ASN A 443 ? ? 62.68 109.90 4 1 THR A 445 ? ? -158.26 83.22 5 1 ASN A 469 ? ? -102.65 69.92 6 1 VAL A 480 ? ? -122.89 -69.39 7 1 ASN A 481 ? ? -118.98 56.54 8 2 ASP A 439 ? ? -150.02 30.44 9 2 THR A 441 ? ? -161.49 -51.18 10 2 ASN A 443 ? ? 62.81 144.39 11 2 LYS A 446 ? ? -115.71 -142.60 12 3 SER A 440 ? ? 63.11 177.37 13 3 THR A 441 ? ? -171.10 -78.00 14 3 THR A 445 ? ? -143.15 32.01 15 3 ASN A 469 ? ? -102.95 71.66 16 3 VAL A 480 ? ? -127.64 -69.40 17 3 ASN A 481 ? ? -113.58 57.04 18 4 ASP A 439 ? ? -141.08 30.98 19 4 THR A 441 ? ? -152.28 -66.32 20 4 ASN A 443 ? ? 61.37 153.70 21 4 THR A 445 ? ? 62.56 84.68 22 4 LYS A 446 ? ? -78.73 -78.85 23 4 LYS A 447 ? ? -134.72 -48.24 24 4 GLN A 448 ? ? -160.53 42.07 25 4 ASN A 469 ? ? -100.54 68.68 26 4 PRO A 478 ? ? -75.09 48.80 27 4 ASN A 481 ? ? -100.13 53.98 28 5 THR A 441 ? ? -156.83 -72.50 29 5 ASN A 443 ? ? 58.90 177.40 30 5 THR A 445 ? ? -157.38 88.85 31 5 LYS A 446 ? ? -97.90 -111.18 32 5 ASN A 469 ? ? -103.35 72.45 33 6 SER A 440 ? ? 64.18 138.31 34 6 THR A 441 ? ? -142.86 -64.75 35 6 ASN A 443 ? ? 60.67 114.31 36 6 ILE A 444 ? ? -160.08 112.77 37 6 LYS A 447 ? ? -164.81 102.33 38 7 SER A 440 ? ? 63.76 130.73 39 7 THR A 441 ? ? -127.50 -73.85 40 7 ASN A 443 ? ? 63.30 157.15 41 7 THR A 445 ? ? 53.88 86.69 42 7 TRP A 450 ? ? 48.65 175.61 43 7 ASN A 469 ? ? -102.72 69.92 44 8 THR A 441 ? ? -162.23 -50.47 45 8 ASN A 443 ? ? 69.51 80.64 46 8 ILE A 444 ? ? 40.24 95.21 47 8 THR A 445 ? ? 61.84 151.70 48 8 LYS A 446 ? ? -166.37 33.25 49 8 TRP A 450 ? ? 48.20 174.93 50 8 ASN A 469 ? ? -102.81 73.46 51 8 PRO A 478 ? ? -67.33 60.61 52 8 VAL A 480 ? ? -118.09 -70.65 53 9 THR A 441 ? ? -155.55 -75.72 54 9 ILE A 444 ? ? 75.89 -56.25 55 9 GLN A 448 ? ? -108.50 78.48 56 9 ASN A 469 ? ? -100.32 76.41 57 10 THR A 441 ? ? -168.98 -71.75 58 10 THR A 442 ? ? -97.82 37.27 59 10 THR A 445 ? ? -178.19 -172.96 60 10 LYS A 446 ? ? 63.64 132.40 61 10 TRP A 450 ? ? -51.75 -84.33 62 10 THR A 451 ? ? 161.75 172.94 63 10 ASN A 481 ? ? 49.46 27.69 64 11 ASP A 439 ? ? 61.70 110.21 65 11 THR A 441 ? ? -167.22 -43.56 66 11 ASN A 443 ? ? 58.86 164.05 67 11 THR A 445 ? ? -104.93 75.21 68 11 TRP A 450 ? ? -57.95 -86.54 69 11 THR A 451 ? ? 173.28 175.09 70 11 ASN A 469 ? ? -102.23 72.17 71 11 PRO A 478 ? ? -79.01 49.93 72 11 VAL A 480 ? ? -121.22 -68.47 73 11 ASN A 481 ? ? -117.61 68.63 74 12 THR A 441 ? ? -147.55 -55.24 75 12 ASN A 443 ? ? 63.81 121.64 76 12 ILE A 444 ? ? 34.41 94.48 77 12 THR A 445 ? ? -158.05 46.85 78 12 LYS A 446 ? ? -143.36 -57.91 79 12 TRP A 450 ? ? 46.76 176.35 80 12 ASN A 469 ? ? -100.54 68.36 81 13 SER A 440 ? ? 62.29 148.38 82 13 THR A 441 ? ? -176.56 -73.57 83 13 ASN A 443 ? ? 167.75 148.91 84 13 LYS A 446 ? ? -88.83 -73.62 85 14 THR A 441 ? ? -162.18 -58.28 86 14 ASN A 443 ? ? 60.10 158.61 87 14 LYS A 446 ? ? -175.50 128.22 88 14 TRP A 450 ? ? 49.35 175.74 89 14 ASN A 469 ? ? -102.92 69.64 90 14 PRO A 478 ? ? -68.41 59.47 91 15 THR A 441 ? ? -170.89 -60.98 92 15 ASN A 443 ? ? 66.90 171.14 93 15 ILE A 444 ? ? -64.63 84.27 94 15 LYS A 446 ? ? -126.58 -56.34 95 15 TRP A 450 ? ? 48.82 175.21 96 15 ASN A 469 ? ? -101.57 70.77 97 15 PRO A 478 ? ? -67.48 62.89 98 16 THR A 441 ? ? -163.08 -48.93 99 16 ASN A 443 ? ? 61.11 115.44 100 16 THR A 445 ? ? 65.19 85.02 101 16 PRO A 478 ? ? -68.07 61.28 102 17 THR A 441 ? ? -158.07 -60.06 103 17 ASN A 443 ? ? 58.95 109.50 104 17 LYS A 446 ? ? 179.43 130.86 105 17 LYS A 447 ? ? 61.63 79.09 106 17 ASN A 481 ? ? 49.66 28.30 107 18 THR A 441 ? ? -142.70 -71.68 108 18 ASN A 443 ? ? 59.34 103.84 109 18 LYS A 446 ? ? -167.59 33.34 110 18 GLN A 448 ? ? -102.28 73.51 111 18 ASN A 469 ? ? -101.86 68.48 112 18 PRO A 478 ? ? -67.93 61.72 113 19 THR A 441 ? ? -176.80 -50.00 114 19 ASN A 443 ? ? 59.23 -174.28 115 19 LYS A 446 ? ? -121.41 -151.09 116 19 TRP A 450 ? ? 47.91 175.99 117 19 ASN A 469 ? ? -102.33 66.72 118 19 VAL A 480 ? ? -81.40 -71.63 119 19 ASN A 481 ? ? -99.80 52.99 120 20 ASP A 439 ? ? 59.91 83.02 121 20 THR A 441 ? ? -130.77 -69.45 122 20 ASN A 443 ? ? 69.48 131.28 123 20 ILE A 444 ? ? 85.20 -20.40 124 20 THR A 445 ? ? 61.69 154.04 125 20 LYS A 446 ? ? -141.53 -52.25 126 20 LYS A 449 ? ? -90.17 58.98 127 20 TRP A 450 ? ? 48.49 175.92 128 20 ASN A 469 ? ? -103.14 70.80 129 20 PRO A 478 ? ? -69.81 57.21 # _pdbx_nmr_ensemble.entry_id 1VFC _pdbx_nmr_ensemble.conformers_calculated_total_number 200 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # loop_ _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solvent_system 1 '1.0-1.5mM TRF2 labeled with 15N and 13C, and DNA; 5mM potassium phosphate buffer, 90% H2O, 10% D2O' '90% H2O/10% D2O' 2 '1.0-1.5mM TRF2 labeled with 15N,and DNA; 5mM potassium phosphate buffer, 90% H2O, 10% D2O' '90% H2O/10% D2O' # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 303 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pH 6.9 _pdbx_nmr_exptl_sample_conditions.ionic_strength 0.005M _pdbx_nmr_exptl_sample_conditions.pressure_units ? _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type 1 1 1 3D_13C-separated_NOESY 2 1 1 '3D 13C-edited(F1), 13C-filtered(F3) NOESY' 3 1 1 '3D 15N-edited(F2), 15N/13C-filtered(F3) NOESY' 4 1 1 3D_13C-separated_TOCSY 5 1 1 3D_13C-separated_COSY 6 2 1 3D_15N-separated_NOESY 7 2 1 HNHA # _pdbx_nmr_details.entry_id 1VFC _pdbx_nmr_details.text 'The structure was determined using triple-resonance NMR spectroscopy.' # _pdbx_nmr_refine.entry_id 1VFC _pdbx_nmr_refine.method 'distance geometry, simulated annealing' _pdbx_nmr_refine.details 'the structures are based on a total of 1450 restraints, 1412 are NOE-derived distance constraints, 38 dihedral angle restraints.' _pdbx_nmr_refine.software_ordinal 1 # loop_ _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.classification _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal NMRPipe 2.0 processing Delaglio 1 Sparky 3.98 'data analysis' Goddard 2 CNS 1.0 'structure solution' ? 3 CNS 1.0 refinement ? 4 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 DA OP3 O N N 74 DA P P N N 75 DA OP1 O N N 76 DA OP2 O N N 77 DA "O5'" O N N 78 DA "C5'" C N N 79 DA "C4'" C N R 80 DA "O4'" O N N 81 DA "C3'" C N S 82 DA "O3'" O N N 83 DA "C2'" C N N 84 DA "C1'" C N R 85 DA N9 N Y N 86 DA C8 C Y N 87 DA N7 N Y N 88 DA C5 C Y N 89 DA C6 C Y N 90 DA N6 N N N 91 DA N1 N Y N 92 DA C2 C Y N 93 DA N3 N Y N 94 DA C4 C Y N 95 DA HOP3 H N N 96 DA HOP2 H N N 97 DA "H5'" H N N 98 DA "H5''" H N N 99 DA "H4'" H N N 100 DA "H3'" H N N 101 DA "HO3'" H N N 102 DA "H2'" H N N 103 DA "H2''" H N N 104 DA "H1'" H N N 105 DA H8 H N N 106 DA H61 H N N 107 DA H62 H N N 108 DA H2 H N N 109 DC OP3 O N N 110 DC P P N N 111 DC OP1 O N N 112 DC OP2 O N N 113 DC "O5'" O N N 114 DC "C5'" C N N 115 DC "C4'" C N R 116 DC "O4'" O N N 117 DC "C3'" C N S 118 DC "O3'" O N N 119 DC "C2'" C N N 120 DC "C1'" C N R 121 DC N1 N N N 122 DC C2 C N N 123 DC O2 O N N 124 DC N3 N N N 125 DC C4 C N N 126 DC N4 N N N 127 DC C5 C N N 128 DC C6 C N N 129 DC HOP3 H N N 130 DC HOP2 H N N 131 DC "H5'" H N N 132 DC "H5''" H N N 133 DC "H4'" H N N 134 DC "H3'" H N N 135 DC "HO3'" H N N 136 DC "H2'" H N N 137 DC "H2''" H N N 138 DC "H1'" H N N 139 DC H41 H N N 140 DC H42 H N N 141 DC H5 H N N 142 DC H6 H N N 143 DG OP3 O N N 144 DG P P N N 145 DG OP1 O N N 146 DG OP2 O N N 147 DG "O5'" O N N 148 DG "C5'" C N N 149 DG "C4'" C N R 150 DG "O4'" O N N 151 DG "C3'" C N S 152 DG "O3'" O N N 153 DG "C2'" C N N 154 DG "C1'" C N R 155 DG N9 N Y N 156 DG C8 C Y N 157 DG N7 N Y N 158 DG C5 C Y N 159 DG C6 C N N 160 DG O6 O N N 161 DG N1 N N N 162 DG C2 C N N 163 DG N2 N N N 164 DG N3 N N N 165 DG C4 C Y N 166 DG HOP3 H N N 167 DG HOP2 H N N 168 DG "H5'" H N N 169 DG "H5''" H N N 170 DG "H4'" H N N 171 DG "H3'" H N N 172 DG "HO3'" H N N 173 DG "H2'" H N N 174 DG "H2''" H N N 175 DG "H1'" H N N 176 DG H8 H N N 177 DG H1 H N N 178 DG H21 H N N 179 DG H22 H N N 180 DT OP3 O N N 181 DT P P N N 182 DT OP1 O N N 183 DT OP2 O N N 184 DT "O5'" O N N 185 DT "C5'" C N N 186 DT "C4'" C N R 187 DT "O4'" O N N 188 DT "C3'" C N S 189 DT "O3'" O N N 190 DT "C2'" C N N 191 DT "C1'" C N R 192 DT N1 N N N 193 DT C2 C N N 194 DT O2 O N N 195 DT N3 N N N 196 DT C4 C N N 197 DT O4 O N N 198 DT C5 C N N 199 DT C7 C N N 200 DT C6 C N N 201 DT HOP3 H N N 202 DT HOP2 H N N 203 DT "H5'" H N N 204 DT "H5''" H N N 205 DT "H4'" H N N 206 DT "H3'" H N N 207 DT "HO3'" H N N 208 DT "H2'" H N N 209 DT "H2''" H N N 210 DT "H1'" H N N 211 DT H3 H N N 212 DT H71 H N N 213 DT H72 H N N 214 DT H73 H N N 215 DT H6 H N N 216 GLN N N N N 217 GLN CA C N S 218 GLN C C N N 219 GLN O O N N 220 GLN CB C N N 221 GLN CG C N N 222 GLN CD C N N 223 GLN OE1 O N N 224 GLN NE2 N N N 225 GLN OXT O N N 226 GLN H H N N 227 GLN H2 H N N 228 GLN HA H N N 229 GLN HB2 H N N 230 GLN HB3 H N N 231 GLN HG2 H N N 232 GLN HG3 H N N 233 GLN HE21 H N N 234 GLN HE22 H N N 235 GLN HXT H N N 236 GLU N N N N 237 GLU CA C N S 238 GLU C C N N 239 GLU O O N N 240 GLU CB C N N 241 GLU CG C N N 242 GLU CD C N N 243 GLU OE1 O N N 244 GLU OE2 O N N 245 GLU OXT O N N 246 GLU H H N N 247 GLU H2 H N N 248 GLU HA H N N 249 GLU HB2 H N N 250 GLU HB3 H N N 251 GLU HG2 H N N 252 GLU HG3 H N N 253 GLU HE2 H N N 254 GLU HXT H N N 255 GLY N N N N 256 GLY CA C N N 257 GLY C C N N 258 GLY O O N N 259 GLY OXT O N N 260 GLY H H N N 261 GLY H2 H N N 262 GLY HA2 H N N 263 GLY HA3 H N N 264 GLY HXT H N N 265 ILE N N N N 266 ILE CA C N S 267 ILE C C N N 268 ILE O O N N 269 ILE CB C N S 270 ILE CG1 C N N 271 ILE CG2 C N N 272 ILE CD1 C N N 273 ILE OXT O N N 274 ILE H H N N 275 ILE H2 H N N 276 ILE HA H N N 277 ILE HB H N N 278 ILE HG12 H N N 279 ILE HG13 H N N 280 ILE HG21 H N N 281 ILE HG22 H N N 282 ILE HG23 H N N 283 ILE HD11 H N N 284 ILE HD12 H N N 285 ILE HD13 H N N 286 ILE HXT H N N 287 LEU N N N N 288 LEU CA C N S 289 LEU C C N N 290 LEU O O N N 291 LEU CB C N N 292 LEU CG C N N 293 LEU CD1 C N N 294 LEU CD2 C N N 295 LEU OXT O N N 296 LEU H H N N 297 LEU H2 H N N 298 LEU HA H N N 299 LEU HB2 H N N 300 LEU HB3 H N N 301 LEU HG H N N 302 LEU HD11 H N N 303 LEU HD12 H N N 304 LEU HD13 H N N 305 LEU HD21 H N N 306 LEU HD22 H N N 307 LEU HD23 H N N 308 LEU HXT H N N 309 LYS N N N N 310 LYS CA C N S 311 LYS C C N N 312 LYS O O N N 313 LYS CB C N N 314 LYS CG C N N 315 LYS CD C N N 316 LYS CE C N N 317 LYS NZ N N N 318 LYS OXT O N N 319 LYS H H N N 320 LYS H2 H N N 321 LYS HA H N N 322 LYS HB2 H N N 323 LYS HB3 H N N 324 LYS HG2 H N N 325 LYS HG3 H N N 326 LYS HD2 H N N 327 LYS HD3 H N N 328 LYS HE2 H N N 329 LYS HE3 H N N 330 LYS HZ1 H N N 331 LYS HZ2 H N N 332 LYS HZ3 H N N 333 LYS HXT H N N 334 MET N N N N 335 MET CA C N S 336 MET C C N N 337 MET O O N N 338 MET CB C N N 339 MET CG C N N 340 MET SD S N N 341 MET CE C N N 342 MET OXT O N N 343 MET H H N N 344 MET H2 H N N 345 MET HA H N N 346 MET HB2 H N N 347 MET HB3 H N N 348 MET HG2 H N N 349 MET HG3 H N N 350 MET HE1 H N N 351 MET HE2 H N N 352 MET HE3 H N N 353 MET HXT H N N 354 PHE N N N N 355 PHE CA C N S 356 PHE C C N N 357 PHE O O N N 358 PHE CB C N N 359 PHE CG C Y N 360 PHE CD1 C Y N 361 PHE CD2 C Y N 362 PHE CE1 C Y N 363 PHE CE2 C Y N 364 PHE CZ C Y N 365 PHE OXT O N N 366 PHE H H N N 367 PHE H2 H N N 368 PHE HA H N N 369 PHE HB2 H N N 370 PHE HB3 H N N 371 PHE HD1 H N N 372 PHE HD2 H N N 373 PHE HE1 H N N 374 PHE HE2 H N N 375 PHE HZ H N N 376 PHE HXT H N N 377 PRO N N N N 378 PRO CA C N S 379 PRO C C N N 380 PRO O O N N 381 PRO CB C N N 382 PRO CG C N N 383 PRO CD C N N 384 PRO OXT O N N 385 PRO H H N N 386 PRO HA H N N 387 PRO HB2 H N N 388 PRO HB3 H N N 389 PRO HG2 H N N 390 PRO HG3 H N N 391 PRO HD2 H N N 392 PRO HD3 H N N 393 PRO HXT H N N 394 SER N N N N 395 SER CA C N S 396 SER C C N N 397 SER O O N N 398 SER CB C N N 399 SER OG O N N 400 SER OXT O N N 401 SER H H N N 402 SER H2 H N N 403 SER HA H N N 404 SER HB2 H N N 405 SER HB3 H N N 406 SER HG H N N 407 SER HXT H N N 408 THR N N N N 409 THR CA C N S 410 THR C C N N 411 THR O O N N 412 THR CB C N R 413 THR OG1 O N N 414 THR CG2 C N N 415 THR OXT O N N 416 THR H H N N 417 THR H2 H N N 418 THR HA H N N 419 THR HB H N N 420 THR HG1 H N N 421 THR HG21 H N N 422 THR HG22 H N N 423 THR HG23 H N N 424 THR HXT H N N 425 TRP N N N N 426 TRP CA C N S 427 TRP C C N N 428 TRP O O N N 429 TRP CB C N N 430 TRP CG C Y N 431 TRP CD1 C Y N 432 TRP CD2 C Y N 433 TRP NE1 N Y N 434 TRP CE2 C Y N 435 TRP CE3 C Y N 436 TRP CZ2 C Y N 437 TRP CZ3 C Y N 438 TRP CH2 C Y N 439 TRP OXT O N N 440 TRP H H N N 441 TRP H2 H N N 442 TRP HA H N N 443 TRP HB2 H N N 444 TRP HB3 H N N 445 TRP HD1 H N N 446 TRP HE1 H N N 447 TRP HE3 H N N 448 TRP HZ2 H N N 449 TRP HZ3 H N N 450 TRP HH2 H N N 451 TRP HXT H N N 452 TYR N N N N 453 TYR CA C N S 454 TYR C C N N 455 TYR O O N N 456 TYR CB C N N 457 TYR CG C Y N 458 TYR CD1 C Y N 459 TYR CD2 C Y N 460 TYR CE1 C Y N 461 TYR CE2 C Y N 462 TYR CZ C Y N 463 TYR OH O N N 464 TYR OXT O N N 465 TYR H H N N 466 TYR H2 H N N 467 TYR HA H N N 468 TYR HB2 H N N 469 TYR HB3 H N N 470 TYR HD1 H N N 471 TYR HD2 H N N 472 TYR HE1 H N N 473 TYR HE2 H N N 474 TYR HH H N N 475 TYR HXT H N N 476 VAL N N N N 477 VAL CA C N S 478 VAL C C N N 479 VAL O O N N 480 VAL CB C N N 481 VAL CG1 C N N 482 VAL CG2 C N N 483 VAL OXT O N N 484 VAL H H N N 485 VAL H2 H N N 486 VAL HA H N N 487 VAL HB H N N 488 VAL HG11 H N N 489 VAL HG12 H N N 490 VAL HG13 H N N 491 VAL HG21 H N N 492 VAL HG22 H N N 493 VAL HG23 H N N 494 VAL HXT H N N 495 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 DA OP3 P sing N N 70 DA OP3 HOP3 sing N N 71 DA P OP1 doub N N 72 DA P OP2 sing N N 73 DA P "O5'" sing N N 74 DA OP2 HOP2 sing N N 75 DA "O5'" "C5'" sing N N 76 DA "C5'" "C4'" sing N N 77 DA "C5'" "H5'" sing N N 78 DA "C5'" "H5''" sing N N 79 DA "C4'" "O4'" sing N N 80 DA "C4'" "C3'" sing N N 81 DA "C4'" "H4'" sing N N 82 DA "O4'" "C1'" sing N N 83 DA "C3'" "O3'" sing N N 84 DA "C3'" "C2'" sing N N 85 DA "C3'" "H3'" sing N N 86 DA "O3'" "HO3'" sing N N 87 DA "C2'" "C1'" sing N N 88 DA "C2'" "H2'" sing N N 89 DA "C2'" "H2''" sing N N 90 DA "C1'" N9 sing N N 91 DA "C1'" "H1'" sing N N 92 DA N9 C8 sing Y N 93 DA N9 C4 sing Y N 94 DA C8 N7 doub Y N 95 DA C8 H8 sing N N 96 DA N7 C5 sing Y N 97 DA C5 C6 sing Y N 98 DA C5 C4 doub Y N 99 DA C6 N6 sing N N 100 DA C6 N1 doub Y N 101 DA N6 H61 sing N N 102 DA N6 H62 sing N N 103 DA N1 C2 sing Y N 104 DA C2 N3 doub Y N 105 DA C2 H2 sing N N 106 DA N3 C4 sing Y N 107 DC OP3 P sing N N 108 DC OP3 HOP3 sing N N 109 DC P OP1 doub N N 110 DC P OP2 sing N N 111 DC P "O5'" sing N N 112 DC OP2 HOP2 sing N N 113 DC "O5'" "C5'" sing N N 114 DC "C5'" "C4'" sing N N 115 DC "C5'" "H5'" sing N N 116 DC "C5'" "H5''" sing N N 117 DC "C4'" "O4'" sing N N 118 DC "C4'" "C3'" sing N N 119 DC "C4'" "H4'" sing N N 120 DC "O4'" "C1'" sing N N 121 DC "C3'" "O3'" sing N N 122 DC "C3'" "C2'" sing N N 123 DC "C3'" "H3'" sing N N 124 DC "O3'" "HO3'" sing N N 125 DC "C2'" "C1'" sing N N 126 DC "C2'" "H2'" sing N N 127 DC "C2'" "H2''" sing N N 128 DC "C1'" N1 sing N N 129 DC "C1'" "H1'" sing N N 130 DC N1 C2 sing N N 131 DC N1 C6 sing N N 132 DC C2 O2 doub N N 133 DC C2 N3 sing N N 134 DC N3 C4 doub N N 135 DC C4 N4 sing N N 136 DC C4 C5 sing N N 137 DC N4 H41 sing N N 138 DC N4 H42 sing N N 139 DC C5 C6 doub N N 140 DC C5 H5 sing N N 141 DC C6 H6 sing N N 142 DG OP3 P sing N N 143 DG OP3 HOP3 sing N N 144 DG P OP1 doub N N 145 DG P OP2 sing N N 146 DG P "O5'" sing N N 147 DG OP2 HOP2 sing N N 148 DG "O5'" "C5'" sing N N 149 DG "C5'" "C4'" sing N N 150 DG "C5'" "H5'" sing N N 151 DG "C5'" "H5''" sing N N 152 DG "C4'" "O4'" sing N N 153 DG "C4'" "C3'" sing N N 154 DG "C4'" "H4'" sing N N 155 DG "O4'" "C1'" sing N N 156 DG "C3'" "O3'" sing N N 157 DG "C3'" "C2'" sing N N 158 DG "C3'" "H3'" sing N N 159 DG "O3'" "HO3'" sing N N 160 DG "C2'" "C1'" sing N N 161 DG "C2'" "H2'" sing N N 162 DG "C2'" "H2''" sing N N 163 DG "C1'" N9 sing N N 164 DG "C1'" "H1'" sing N N 165 DG N9 C8 sing Y N 166 DG N9 C4 sing Y N 167 DG C8 N7 doub Y N 168 DG C8 H8 sing N N 169 DG N7 C5 sing Y N 170 DG C5 C6 sing N N 171 DG C5 C4 doub Y N 172 DG C6 O6 doub N N 173 DG C6 N1 sing N N 174 DG N1 C2 sing N N 175 DG N1 H1 sing N N 176 DG C2 N2 sing N N 177 DG C2 N3 doub N N 178 DG N2 H21 sing N N 179 DG N2 H22 sing N N 180 DG N3 C4 sing N N 181 DT OP3 P sing N N 182 DT OP3 HOP3 sing N N 183 DT P OP1 doub N N 184 DT P OP2 sing N N 185 DT P "O5'" sing N N 186 DT OP2 HOP2 sing N N 187 DT "O5'" "C5'" sing N N 188 DT "C5'" "C4'" sing N N 189 DT "C5'" "H5'" sing N N 190 DT "C5'" "H5''" sing N N 191 DT "C4'" "O4'" sing N N 192 DT "C4'" "C3'" sing N N 193 DT "C4'" "H4'" sing N N 194 DT "O4'" "C1'" sing N N 195 DT "C3'" "O3'" sing N N 196 DT "C3'" "C2'" sing N N 197 DT "C3'" "H3'" sing N N 198 DT "O3'" "HO3'" sing N N 199 DT "C2'" "C1'" sing N N 200 DT "C2'" "H2'" sing N N 201 DT "C2'" "H2''" sing N N 202 DT "C1'" N1 sing N N 203 DT "C1'" "H1'" sing N N 204 DT N1 C2 sing N N 205 DT N1 C6 sing N N 206 DT C2 O2 doub N N 207 DT C2 N3 sing N N 208 DT N3 C4 sing N N 209 DT N3 H3 sing N N 210 DT C4 O4 doub N N 211 DT C4 C5 sing N N 212 DT C5 C7 sing N N 213 DT C5 C6 doub N N 214 DT C7 H71 sing N N 215 DT C7 H72 sing N N 216 DT C7 H73 sing N N 217 DT C6 H6 sing N N 218 GLN N CA sing N N 219 GLN N H sing N N 220 GLN N H2 sing N N 221 GLN CA C sing N N 222 GLN CA CB sing N N 223 GLN CA HA sing N N 224 GLN C O doub N N 225 GLN C OXT sing N N 226 GLN CB CG sing N N 227 GLN CB HB2 sing N N 228 GLN CB HB3 sing N N 229 GLN CG CD sing N N 230 GLN CG HG2 sing N N 231 GLN CG HG3 sing N N 232 GLN CD OE1 doub N N 233 GLN CD NE2 sing N N 234 GLN NE2 HE21 sing N N 235 GLN NE2 HE22 sing N N 236 GLN OXT HXT sing N N 237 GLU N CA sing N N 238 GLU N H sing N N 239 GLU N H2 sing N N 240 GLU CA C sing N N 241 GLU CA CB sing N N 242 GLU CA HA sing N N 243 GLU C O doub N N 244 GLU C OXT sing N N 245 GLU CB CG sing N N 246 GLU CB HB2 sing N N 247 GLU CB HB3 sing N N 248 GLU CG CD sing N N 249 GLU CG HG2 sing N N 250 GLU CG HG3 sing N N 251 GLU CD OE1 doub N N 252 GLU CD OE2 sing N N 253 GLU OE2 HE2 sing N N 254 GLU OXT HXT sing N N 255 GLY N CA sing N N 256 GLY N H sing N N 257 GLY N H2 sing N N 258 GLY CA C sing N N 259 GLY CA HA2 sing N N 260 GLY CA HA3 sing N N 261 GLY C O doub N N 262 GLY C OXT sing N N 263 GLY OXT HXT sing N N 264 ILE N CA sing N N 265 ILE N H sing N N 266 ILE N H2 sing N N 267 ILE CA C sing N N 268 ILE CA CB sing N N 269 ILE CA HA sing N N 270 ILE C O doub N N 271 ILE C OXT sing N N 272 ILE CB CG1 sing N N 273 ILE CB CG2 sing N N 274 ILE CB HB sing N N 275 ILE CG1 CD1 sing N N 276 ILE CG1 HG12 sing N N 277 ILE CG1 HG13 sing N N 278 ILE CG2 HG21 sing N N 279 ILE CG2 HG22 sing N N 280 ILE CG2 HG23 sing N N 281 ILE CD1 HD11 sing N N 282 ILE CD1 HD12 sing N N 283 ILE CD1 HD13 sing N N 284 ILE OXT HXT sing N N 285 LEU N CA sing N N 286 LEU N H sing N N 287 LEU N H2 sing N N 288 LEU CA C sing N N 289 LEU CA CB sing N N 290 LEU CA HA sing N N 291 LEU C O doub N N 292 LEU C OXT sing N N 293 LEU CB CG sing N N 294 LEU CB HB2 sing N N 295 LEU CB HB3 sing N N 296 LEU CG CD1 sing N N 297 LEU CG CD2 sing N N 298 LEU CG HG sing N N 299 LEU CD1 HD11 sing N N 300 LEU CD1 HD12 sing N N 301 LEU CD1 HD13 sing N N 302 LEU CD2 HD21 sing N N 303 LEU CD2 HD22 sing N N 304 LEU CD2 HD23 sing N N 305 LEU OXT HXT sing N N 306 LYS N CA sing N N 307 LYS N H sing N N 308 LYS N H2 sing N N 309 LYS CA C sing N N 310 LYS CA CB sing N N 311 LYS CA HA sing N N 312 LYS C O doub N N 313 LYS C OXT sing N N 314 LYS CB CG sing N N 315 LYS CB HB2 sing N N 316 LYS CB HB3 sing N N 317 LYS CG CD sing N N 318 LYS CG HG2 sing N N 319 LYS CG HG3 sing N N 320 LYS CD CE sing N N 321 LYS CD HD2 sing N N 322 LYS CD HD3 sing N N 323 LYS CE NZ sing N N 324 LYS CE HE2 sing N N 325 LYS CE HE3 sing N N 326 LYS NZ HZ1 sing N N 327 LYS NZ HZ2 sing N N 328 LYS NZ HZ3 sing N N 329 LYS OXT HXT sing N N 330 MET N CA sing N N 331 MET N H sing N N 332 MET N H2 sing N N 333 MET CA C sing N N 334 MET CA CB sing N N 335 MET CA HA sing N N 336 MET C O doub N N 337 MET C OXT sing N N 338 MET CB CG sing N N 339 MET CB HB2 sing N N 340 MET CB HB3 sing N N 341 MET CG SD sing N N 342 MET CG HG2 sing N N 343 MET CG HG3 sing N N 344 MET SD CE sing N N 345 MET CE HE1 sing N N 346 MET CE HE2 sing N N 347 MET CE HE3 sing N N 348 MET OXT HXT sing N N 349 PHE N CA sing N N 350 PHE N H sing N N 351 PHE N H2 sing N N 352 PHE CA C sing N N 353 PHE CA CB sing N N 354 PHE CA HA sing N N 355 PHE C O doub N N 356 PHE C OXT sing N N 357 PHE CB CG sing N N 358 PHE CB HB2 sing N N 359 PHE CB HB3 sing N N 360 PHE CG CD1 doub Y N 361 PHE CG CD2 sing Y N 362 PHE CD1 CE1 sing Y N 363 PHE CD1 HD1 sing N N 364 PHE CD2 CE2 doub Y N 365 PHE CD2 HD2 sing N N 366 PHE CE1 CZ doub Y N 367 PHE CE1 HE1 sing N N 368 PHE CE2 CZ sing Y N 369 PHE CE2 HE2 sing N N 370 PHE CZ HZ sing N N 371 PHE OXT HXT sing N N 372 PRO N CA sing N N 373 PRO N CD sing N N 374 PRO N H sing N N 375 PRO CA C sing N N 376 PRO CA CB sing N N 377 PRO CA HA sing N N 378 PRO C O doub N N 379 PRO C OXT sing N N 380 PRO CB CG sing N N 381 PRO CB HB2 sing N N 382 PRO CB HB3 sing N N 383 PRO CG CD sing N N 384 PRO CG HG2 sing N N 385 PRO CG HG3 sing N N 386 PRO CD HD2 sing N N 387 PRO CD HD3 sing N N 388 PRO OXT HXT sing N N 389 SER N CA sing N N 390 SER N H sing N N 391 SER N H2 sing N N 392 SER CA C sing N N 393 SER CA CB sing N N 394 SER CA HA sing N N 395 SER C O doub N N 396 SER C OXT sing N N 397 SER CB OG sing N N 398 SER CB HB2 sing N N 399 SER CB HB3 sing N N 400 SER OG HG sing N N 401 SER OXT HXT sing N N 402 THR N CA sing N N 403 THR N H sing N N 404 THR N H2 sing N N 405 THR CA C sing N N 406 THR CA CB sing N N 407 THR CA HA sing N N 408 THR C O doub N N 409 THR C OXT sing N N 410 THR CB OG1 sing N N 411 THR CB CG2 sing N N 412 THR CB HB sing N N 413 THR OG1 HG1 sing N N 414 THR CG2 HG21 sing N N 415 THR CG2 HG22 sing N N 416 THR CG2 HG23 sing N N 417 THR OXT HXT sing N N 418 TRP N CA sing N N 419 TRP N H sing N N 420 TRP N H2 sing N N 421 TRP CA C sing N N 422 TRP CA CB sing N N 423 TRP CA HA sing N N 424 TRP C O doub N N 425 TRP C OXT sing N N 426 TRP CB CG sing N N 427 TRP CB HB2 sing N N 428 TRP CB HB3 sing N N 429 TRP CG CD1 doub Y N 430 TRP CG CD2 sing Y N 431 TRP CD1 NE1 sing Y N 432 TRP CD1 HD1 sing N N 433 TRP CD2 CE2 doub Y N 434 TRP CD2 CE3 sing Y N 435 TRP NE1 CE2 sing Y N 436 TRP NE1 HE1 sing N N 437 TRP CE2 CZ2 sing Y N 438 TRP CE3 CZ3 doub Y N 439 TRP CE3 HE3 sing N N 440 TRP CZ2 CH2 doub Y N 441 TRP CZ2 HZ2 sing N N 442 TRP CZ3 CH2 sing Y N 443 TRP CZ3 HZ3 sing N N 444 TRP CH2 HH2 sing N N 445 TRP OXT HXT sing N N 446 TYR N CA sing N N 447 TYR N H sing N N 448 TYR N H2 sing N N 449 TYR CA C sing N N 450 TYR CA CB sing N N 451 TYR CA HA sing N N 452 TYR C O doub N N 453 TYR C OXT sing N N 454 TYR CB CG sing N N 455 TYR CB HB2 sing N N 456 TYR CB HB3 sing N N 457 TYR CG CD1 doub Y N 458 TYR CG CD2 sing Y N 459 TYR CD1 CE1 sing Y N 460 TYR CD1 HD1 sing N N 461 TYR CD2 CE2 doub Y N 462 TYR CD2 HD2 sing N N 463 TYR CE1 CZ doub Y N 464 TYR CE1 HE1 sing N N 465 TYR CE2 CZ sing Y N 466 TYR CE2 HE2 sing N N 467 TYR CZ OH sing N N 468 TYR OH HH sing N N 469 TYR OXT HXT sing N N 470 VAL N CA sing N N 471 VAL N H sing N N 472 VAL N H2 sing N N 473 VAL CA C sing N N 474 VAL CA CB sing N N 475 VAL CA HA sing N N 476 VAL C O doub N N 477 VAL C OXT sing N N 478 VAL CB CG1 sing N N 479 VAL CB CG2 sing N N 480 VAL CB HB sing N N 481 VAL CG1 HG11 sing N N 482 VAL CG1 HG12 sing N N 483 VAL CG1 HG13 sing N N 484 VAL CG2 HG21 sing N N 485 VAL CG2 HG22 sing N N 486 VAL CG2 HG23 sing N N 487 VAL OXT HXT sing N N 488 # _ndb_struct_conf_na.entry_id 1VFC _ndb_struct_conf_na.feature 'double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DG 1 1_555 B DC 13 1_555 -0.181 -0.112 0.462 15.652 -2.949 -0.855 1 B_DG1:DC26_C B 1 ? C 26 ? 19 1 1 A DT 2 1_555 B DA 12 1_555 0.104 -0.228 0.903 -6.450 -1.084 -3.937 2 B_DT2:DA25_C B 2 ? C 25 ? 20 1 1 A DT 3 1_555 B DA 11 1_555 0.151 -0.117 0.159 -5.750 -2.684 -1.102 3 B_DT3:DA24_C B 3 ? C 24 ? 20 1 1 A DA 4 1_555 B DT 10 1_555 -0.020 -0.177 0.183 -0.024 12.458 -0.531 4 B_DA4:DT23_C B 4 ? C 23 ? 20 1 1 A DG 5 1_555 B DC 9 1_555 -0.060 -0.112 -0.273 -0.204 17.325 0.533 5 B_DG5:DC22_C B 5 ? C 22 ? 19 1 1 A DG 6 1_555 B DC 8 1_555 -0.009 -0.137 -0.587 -3.777 15.224 -0.916 6 B_DG6:DC21_C B 6 ? C 21 ? 19 1 1 A DG 7 1_555 B DC 7 1_555 -0.087 -0.167 -0.378 -0.759 20.669 -0.277 7 B_DG7:DC20_C B 7 ? C 20 ? 19 1 1 A DT 8 1_555 B DA 6 1_555 0.090 -0.216 0.075 -12.583 13.095 0.147 8 B_DT8:DA19_C B 8 ? C 19 ? 20 1 1 A DT 9 1_555 B DA 5 1_555 -0.155 -0.164 -0.043 -7.606 15.634 -2.434 9 B_DT9:DA18_C B 9 ? C 18 ? 20 1 1 A DA 10 1_555 B DT 4 1_555 0.197 -0.074 -0.001 0.005 0.022 -1.326 10 B_DA10:DT17_C B 10 ? C 17 ? 20 1 1 A DG 11 1_555 B DC 3 1_555 -0.108 -0.095 0.110 4.722 15.744 2.621 11 B_DG11:DC16_C B 11 ? C 16 ? 19 1 1 A DG 12 1_555 B DC 2 1_555 -0.039 -0.095 -0.226 -1.452 16.167 0.787 12 B_DG12:DC15_C B 12 ? C 15 ? 19 1 1 A DG 13 1_555 B DC 1 1_555 -0.149 -0.101 0.036 -8.208 12.138 2.141 13 B_DG13:DC14_C B 13 ? C 14 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DG 1 1_555 B DC 13 1_555 A DT 2 1_555 B DA 12 1_555 0.142 -0.285 4.195 -1.620 -1.803 40.229 -0.153 -0.441 4.195 -2.619 2.352 40.299 1 BB_DG1DT2:DA25DC26_CC B 1 ? C 26 ? B 2 ? C 25 ? 1 A DT 2 1_555 B DA 12 1_555 A DT 3 1_555 B DA 11 1_555 0.238 -0.349 3.107 4.605 -3.175 38.409 -0.154 0.180 3.131 -4.794 -6.954 38.799 2 BB_DT2DT3:DA24DA25_CC B 2 ? C 25 ? B 3 ? C 24 ? 1 A DT 3 1_555 B DA 11 1_555 A DA 4 1_555 B DT 10 1_555 0.199 -0.500 2.795 -2.549 2.898 35.603 -1.167 -0.633 2.727 4.723 4.153 35.805 3 BB_DT3DA4:DT23DA24_CC B 3 ? C 24 ? B 4 ? C 23 ? 1 A DA 4 1_555 B DT 10 1_555 A DG 5 1_555 B DC 9 1_555 -0.042 -0.980 3.604 1.521 -2.613 32.197 -1.246 0.374 3.664 -4.699 -2.736 32.335 4 BB_DA4DG5:DC22DT23_CC B 4 ? C 23 ? B 5 ? C 22 ? 1 A DG 5 1_555 B DC 9 1_555 A DG 6 1_555 B DC 8 1_555 -0.057 -0.871 3.791 2.079 2.274 33.018 -1.965 0.502 3.714 3.991 -3.648 33.157 5 BB_DG5DG6:DC21DC22_CC B 5 ? C 22 ? B 6 ? C 21 ? 1 A DG 6 1_555 B DC 8 1_555 A DG 7 1_555 B DC 7 1_555 0.058 -0.483 3.412 -1.503 2.387 34.447 -1.195 -0.338 3.366 4.022 2.533 34.559 6 BB_DG6DG7:DC20DC21_CC B 6 ? C 21 ? B 7 ? C 20 ? 1 A DG 7 1_555 B DC 7 1_555 A DT 8 1_555 B DA 6 1_555 0.270 -0.755 4.113 -0.248 0.442 34.559 -1.356 -0.502 4.101 0.743 0.418 34.563 7 BB_DG7DT8:DA19DC20_CC B 7 ? C 20 ? B 8 ? C 19 ? 1 A DT 8 1_555 B DA 6 1_555 A DT 9 1_555 B DA 5 1_555 -0.472 -0.791 3.422 0.912 -4.402 32.127 -0.595 1.014 3.482 -7.906 -1.638 32.432 8 BB_DT8DT9:DA18DA19_CC B 8 ? C 19 ? B 9 ? C 18 ? 1 A DT 9 1_555 B DA 5 1_555 A DA 10 1_555 B DT 4 1_555 0.317 -0.403 3.064 2.070 5.892 36.323 -1.381 -0.240 2.977 9.366 -3.291 36.839 9 BB_DT9DA10:DT17DA18_CC B 9 ? C 18 ? B 10 ? C 17 ? 1 A DA 10 1_555 B DT 4 1_555 A DG 11 1_555 B DC 3 1_555 0.284 -0.385 3.223 -2.627 -3.693 34.770 -0.092 -0.861 3.216 -6.147 4.373 35.055 10 BB_DA10DG11:DC16DT17_CC B 10 ? C 17 ? B 11 ? C 16 ? 1 A DG 11 1_555 B DC 3 1_555 A DG 12 1_555 B DC 2 1_555 -0.232 -0.519 3.989 1.677 -5.392 36.022 0.090 0.656 4.008 -8.653 -2.692 36.448 11 BB_DG11DG12:DC15DC16_CC B 11 ? C 16 ? B 12 ? C 15 ? 1 A DG 12 1_555 B DC 2 1_555 A DG 13 1_555 B DC 1 1_555 -0.035 -0.547 3.786 -0.806 0.021 36.214 -0.883 -0.075 3.785 0.034 1.296 36.222 12 BB_DG12DG13:DC14DC15_CC B 12 ? C 15 ? B 13 ? C 14 ? # loop_ _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.type _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.field_strength 1 ? Bruker DMX 600 2 ? Bruker AVANCE 800 # _atom_sites.entry_id 1VFC _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O P S # loop_