HEADER TRANSFERASE 14-JUN-04 1VKR TITLE STRUCTURE OF IIB DOMAIN OF THE MANNITOL-SPECIFIC PERMEASE ENZYME II COMPND MOL_ID: 1; COMPND 2 MOLECULE: MANNITOL-SPECIFIC PTS SYSTEM ENZYME IIABC COMPONENTS; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: IIB DOMAIN; COMPND 5 SYNONYM: IIBMTL PHOSPHOTRANSFERASE ENZYME II, B COMPONENT, EIIB-MTL; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 83334; SOURCE 4 STRAIN: O157:H7; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PHOSPHOTRANSFERASE, TRANSFERASE, KINASE, SUGAR TRANSPORT EXPDTA SOLUTION NMR AUTHOR G.M.CLORE,P.M.LEGLER,M.CAI REVDAT 4 27-DEC-23 1VKR 1 REMARK SEQADV REVDAT 3 13-JUL-11 1VKR 1 VERSN REVDAT 2 24-FEB-09 1VKR 1 VERSN REVDAT 1 21-SEP-04 1VKR 0 JRNL AUTH P.M.LEGLER,M.CAI,A.PETERKOFSKY,G.M.CLORE JRNL TITL THREE-DIMENSIONAL SOLUTION STRUCTURE OF THE CYTOPLASMIC B JRNL TITL 2 DOMAIN OF THE MANNITOL TRANSPORTER II-MANNITOL OF THE JRNL TITL 3 ESCHERICHIA COLI PHOSPHOTRANSFERASE SYSTEM. JRNL REF J.BIOL.CHEM. V. 279 39115 2004 JRNL REFN ISSN 0021-9258 JRNL PMID 15258141 JRNL DOI 10.1074/JBC.M406764200 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR NIH (HTTP://NMR.CIT.NIH.GOV/XPLOR_NIH) REMARK 3 AUTHORS : SCHWIETERS, KUSZEWSKI, TJANDRA, CLORE REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 THE TARGET FUNCTION COMPRISES TERMS FOR THE NOE-DERIVED REMARK 3 INTERPROTON DISTANCE RESTRAINTS, TORSION ANGLE RESTRAINTS, 3JHN- REMARK 3 HALPHA COUPLING CONSTANT RESTRAINTS, 13CALPHA/BETA CHEMICAL SHIFT REMARK 3 RESTRAINTS, AND RESIDUAL DIPOLAR COUPLING RESTRAINTS (N-H, N-C' REMARK 3 AND HN-C'); A QUARTIC VAN DER WAALS REPULSION TERM, TORSION ANGLE REMARK 3 AND HYDROGEN BONDING DATABASE POTENTIALS OF MEAN FORCE, AND A REMARK 3 RADIUS OF GYRATION RESTRAINTS. REMARK 3 REMARK 3 IN THIS ENTRY THE LAST COLUMN REPRESENTS THE AVERAGE RMS REMARK 3 DIFFERENCE BETWEEN THE INDIVIDUAL SIMULATED BEST-FITTED REMARK 3 TO RESIDUES 375-471. ONLY RESIDUES 375-471 ARE SHOWN REMARK 3 SINCE RESIDUES 365-374 AND 472-489 AT THE N- AND C-TERMINI REMARK 3 RESPECTIVELY, ARE DISORDERED IN SOLUTION. REMARK 3 REMARK 3 EXPERIMENTAL RESTRAINTS: REMARK 3 1444 INTERPROTON DISTANCE RESTRAINTS: REMARK 3 (90 INTRARESIDUE; 419 SEQUENTIAL, 347 REMARK 3 MEDIUM-RANGE, AND 517 LONG-RANGE INTERRESIDUE; REMARK 3 50 SEQUENTIAL/MEDIUM-RANGE AMBIGUOUS; REMARK 3 21 LONG-RANGE AMBIGUOUS REMARK 3 110 DISTANCE RESTRAINTS FOR 55 BACKBONE H-BONDS REMARK 3 214 TORSION ANGLE RESTRAINTS (90 PHI, 94 PSI, 68 CHI) REMARK 3 189 CALPHA/CBETA CHEMICAL SHIFT RESTRAINTS REMARK 3 70 3JHN-HA COUPLING CONSTANT RESTRAINTS REMARK 3 200 RESIDUAL DIPOLAR COUPLING RESTRAINTS REMARK 3 (74 N-H, 62 N-C', 64 HN-C') REMARK 3 DIPOLAR COUPLING R-FACTORS: REMARK 3 N-H 2.8% REMARK 3 N-C' 14.9% REMARK 3 HN-C' 13.5% REMARK 4 REMARK 4 1VKR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-JUN-04. REMARK 100 THE DEPOSITION ID IS D_1000001960. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 308.00 REMARK 210 PH : 7.1 REMARK 210 IONIC STRENGTH : 40 MM SODIUM PHOSPHATE REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 1) TRIPLE RESONANCE FOR REMARK 210 ASSIGNMENT OF PROTEIN; (2) REMARK 210 QUANTITATIVE J CORRELATION FOR REMARK 210 COUPLING CONSTANTS; (3) 3D, 4D REMARK 210 HETERONUCLEAR SEPARATED NOE REMARK 210 EXPTS; (4) IPAP AND COUPLED HSQC REMARK 210 EXPERIMENTS FOR DIPOLAR REMARK 210 COUPLINGS. DIPOLAR COUPLINGS REMARK 210 WERE MEASURED IN PEG/HEXANOL REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 600 MHZ; 750 MHZ; 800 REMARK 210 MHZ REMARK 210 SPECTROMETER MODEL : DMX500; DMX600; DRX600; DMC750; REMARK 210 DRX800 REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 80 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 1 REMARK 210 CONFORMERS, SELECTION CRITERIA : REGULARIZED MEAN STRUCTURE REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 RES C SSSEQI REMARK 465 GLY A 365 REMARK 465 SER A 366 REMARK 465 ALA A 367 REMARK 465 GLY A 368 REMARK 465 ASP A 369 REMARK 465 VAL A 370 REMARK 465 THR A 371 REMARK 465 ASN A 372 REMARK 465 ASP A 373 REMARK 465 LEU A 374 REMARK 465 THR A 472 REMARK 465 GLU A 473 REMARK 465 ASN A 474 REMARK 465 GLU A 475 REMARK 465 VAL A 476 REMARK 465 LYS A 477 REMARK 465 VAL A 478 REMARK 465 LYS A 479 REMARK 465 ASP A 480 REMARK 465 SER A 481 REMARK 465 LEU A 482 REMARK 465 LYS A 483 REMARK 465 ASP A 484 REMARK 465 SER A 485 REMARK 465 PHE A 486 REMARK 465 ASP A 487 REMARK 465 ASP A 488 REMARK 465 SER A 489 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HD1 HIS A 430 H ASP A 432 1.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 378 -3.04 -143.23 REMARK 500 MET A 388 -67.60 -149.09 REMARK 500 ASP A 454 79.20 -62.04 REMARK 500 REMARK 500 REMARK: NULL DBREF 1VKR A 367 489 UNP P00550 PTM3C_ECOLI 367 489 SEQADV 1VKR GLY A 365 UNP P00550 CLONING ARTIFACT SEQADV 1VKR SER A 366 UNP P00550 CLONING ARTIFACT SEQRES 1 A 125 GLY SER ALA GLY ASP VAL THR ASN ASP LEU SER HIS VAL SEQRES 2 A 125 ARG LYS ILE ILE VAL ALA CYS ASP ALA GLY MET GLY SER SEQRES 3 A 125 SER ALA MET GLY ALA GLY VAL LEU ARG LYS LYS ILE GLN SEQRES 4 A 125 ASP ALA GLY LEU SER GLN ILE SER VAL THR ASN SER ALA SEQRES 5 A 125 ILE ASN ASN LEU PRO PRO ASP VAL ASP LEU VAL ILE THR SEQRES 6 A 125 HIS ARG ASP LEU THR GLU ARG ALA MET ARG GLN VAL PRO SEQRES 7 A 125 GLN ALA GLN HIS ILE SER LEU THR ASN PHE LEU ASP SER SEQRES 8 A 125 GLY LEU TYR THR SER LEU THR GLU ARG LEU VAL ALA ALA SEQRES 9 A 125 GLN ARG HIS THR GLU ASN GLU VAL LYS VAL LYS ASP SER SEQRES 10 A 125 LEU LYS ASP SER PHE ASP ASP SER HELIX 1 1 MET A 388 ALA A 405 1 18 HELIX 2 2 ARG A 431 VAL A 441 1 11 HELIX 3 3 ASP A 454 HIS A 471 1 18 SHEET 1 A 4 SER A 411 ASN A 414 0 SHEET 2 A 4 LYS A 379 VAL A 382 1 N ILE A 380 O SER A 411 SHEET 3 A 4 LEU A 426 HIS A 430 1 O ILE A 428 N ILE A 381 SHEET 4 A 4 GLN A 445 LEU A 449 1 O GLN A 445 N VAL A 427 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000