HEADER TRANSFERASE 30-SEP-04 1VMJ TITLE CRYSTAL STRUCTURE OF A PUTATIVE THIAMIN PHOSPHATE SYNTHASE (TM0723) TITLE 2 FROM THERMOTOGA MARITIMA MSB8 AT 1.52 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYPOTHETICAL PROTEIN TM0723; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOTOGA MARITIMA; SOURCE 3 ORGANISM_TAXID: 243274; SOURCE 4 STRAIN: MSB8; SOURCE 5 GENE: TM0723; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS PUTATIVE THIAMIN PHOSPHATE SYNTHASE, STRUCTURAL GENOMICS, JOINT KEYWDS 2 CENTER FOR STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, KEYWDS 3 PSI, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 8 20-SEP-23 1VMJ 1 REMARK REVDAT 7 25-JAN-23 1VMJ 1 REMARK SEQADV LINK REVDAT 6 13-JUL-11 1VMJ 1 VERSN REVDAT 5 28-JUL-10 1VMJ 1 HEADER TITLE KEYWDS REVDAT 4 24-FEB-09 1VMJ 1 VERSN REVDAT 3 28-MAR-06 1VMJ 1 JRNL REVDAT 2 18-JAN-05 1VMJ 1 AUTHOR KEYWDS REMARK REVDAT 1 12-OCT-04 1VMJ 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF HYPOTHETICAL PROTEIN (TM0723) FROM JRNL TITL 2 THERMOTOGA MARITIMA AT 1.52 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.52 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.52 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.55 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 33973 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.145 REMARK 3 R VALUE (WORKING SET) : 0.144 REMARK 3 FREE R VALUE : 0.163 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1790 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.52 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.56 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2460 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.77 REMARK 3 BIN R VALUE (WORKING SET) : 0.2840 REMARK 3 BIN FREE R VALUE SET COUNT : 136 REMARK 3 BIN FREE R VALUE : 0.3140 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1138 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 16 REMARK 3 SOLVENT ATOMS : 213 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 24.03 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.68 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.049 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.051 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.036 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.965 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.976 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.972 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1209 ; 0.011 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1104 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1630 ; 1.358 ; 1.963 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2566 ; 0.795 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 138 ; 6.717 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 62 ;38.858 ;23.226 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 228 ;11.836 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ;13.907 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 170 ; 0.084 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1302 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 254 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 226 ; 0.240 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1121 ; 0.196 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 575 ; 0.179 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 729 ; 0.084 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 161 ; 0.166 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 5 ; 0.266 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 9 ; 0.128 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 65 ; 0.284 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 23 ; 0.144 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 696 ; 1.402 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 283 ; 0.411 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1134 ; 2.277 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 531 ; 3.674 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 496 ; 5.350 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 139 REMARK 3 ORIGIN FOR THE GROUP (A): 48.9810 64.1420 50.4980 REMARK 3 T TENSOR REMARK 3 T11: -0.0032 T22: -0.0335 REMARK 3 T33: -0.0182 T12: 0.0021 REMARK 3 T13: -0.0180 T23: -0.0058 REMARK 3 L TENSOR REMARK 3 L11: 0.5901 L22: 0.3079 REMARK 3 L33: 0.5262 L12: 0.1699 REMARK 3 L13: 0.2322 L23: 0.1462 REMARK 3 S TENSOR REMARK 3 S11: -0.0439 S12: -0.0317 S13: 0.0728 REMARK 3 S21: -0.0709 S22: 0.0071 S23: 0.0529 REMARK 3 S31: -0.0954 S32: -0.0463 S33: 0.0368 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1. HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. 2. THE DENSITY FOR SO4 4 IS LOCATED ON REMARK 3 CRYSTALLOGRAPHIC 2-FOLD AXIS. THERE ARE SOME EXTRA DIFFERENCE REMARK 3 DENSITY AFTER THE MODELLING OF 1/2 OCCUPIED SULFATE. REMARK 4 REMARK 4 1VMJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-OCT-04. REMARK 100 THE DEPOSITION ID IS D_1000002015. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-DEC-01 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.024627 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL SI(311) BENT REMARK 200 MONOCHROMATOR REMARK 200 OPTICS : FLAT MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS, SCALA 5.0), CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35764 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.520 REMARK 200 RESOLUTION RANGE LOW (A) : 27.550 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 20.50 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.11500 REMARK 200 FOR THE DATA SET : 19.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.52 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.60 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 8.80 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.01166 REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 1VMF REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.48 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.85 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 3.2M (NH4)2SO4, 0.1M MES PH 6.0, VAPOR REMARK 280 DIFFUSION,SITTING DROP,NANODROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 13555 Y+1/4,X+3/4,-Z+3/4 REMARK 290 14555 -Y+1/4,-X+1/4,-Z+1/4 REMARK 290 15555 Y+3/4,-X+3/4,Z+1/4 REMARK 290 16555 -Y+3/4,X+1/4,Z+3/4 REMARK 290 17555 X+1/4,Z+3/4,-Y+3/4 REMARK 290 18555 -X+3/4,Z+1/4,Y+3/4 REMARK 290 19555 -X+1/4,-Z+1/4,-Y+1/4 REMARK 290 20555 X+3/4,-Z+3/4,Y+1/4 REMARK 290 21555 Z+1/4,Y+3/4,-X+3/4 REMARK 290 22555 Z+3/4,-Y+3/4,X+1/4 REMARK 290 23555 -Z+3/4,Y+1/4,X+3/4 REMARK 290 24555 -Z+1/4,-Y+1/4,-X+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 55.09700 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 55.09700 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 55.09700 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 55.09700 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 55.09700 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 55.09700 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 55.09700 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 55.09700 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 55.09700 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 55.09700 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 55.09700 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 55.09700 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 55.09700 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 55.09700 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 55.09700 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 55.09700 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 55.09700 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 55.09700 REMARK 290 SMTRY1 13 0.000000 1.000000 0.000000 27.54850 REMARK 290 SMTRY2 13 1.000000 0.000000 0.000000 82.64550 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 82.64550 REMARK 290 SMTRY1 14 0.000000 -1.000000 0.000000 27.54850 REMARK 290 SMTRY2 14 -1.000000 0.000000 0.000000 27.54850 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 27.54850 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 82.64550 REMARK 290 SMTRY2 15 -1.000000 0.000000 0.000000 82.64550 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 27.54850 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 82.64550 REMARK 290 SMTRY2 16 1.000000 0.000000 0.000000 27.54850 REMARK 290 SMTRY3 16 0.000000 0.000000 1.000000 82.64550 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 27.54850 REMARK 290 SMTRY2 17 0.000000 0.000000 1.000000 82.64550 REMARK 290 SMTRY3 17 0.000000 -1.000000 0.000000 82.64550 REMARK 290 SMTRY1 18 -1.000000 0.000000 0.000000 82.64550 REMARK 290 SMTRY2 18 0.000000 0.000000 1.000000 27.54850 REMARK 290 SMTRY3 18 0.000000 1.000000 0.000000 82.64550 REMARK 290 SMTRY1 19 -1.000000 0.000000 0.000000 27.54850 REMARK 290 SMTRY2 19 0.000000 0.000000 -1.000000 27.54850 REMARK 290 SMTRY3 19 0.000000 -1.000000 0.000000 27.54850 REMARK 290 SMTRY1 20 1.000000 0.000000 0.000000 82.64550 REMARK 290 SMTRY2 20 0.000000 0.000000 -1.000000 82.64550 REMARK 290 SMTRY3 20 0.000000 1.000000 0.000000 27.54850 REMARK 290 SMTRY1 21 0.000000 0.000000 1.000000 27.54850 REMARK 290 SMTRY2 21 0.000000 1.000000 0.000000 82.64550 REMARK 290 SMTRY3 21 -1.000000 0.000000 0.000000 82.64550 REMARK 290 SMTRY1 22 0.000000 0.000000 1.000000 82.64550 REMARK 290 SMTRY2 22 0.000000 -1.000000 0.000000 82.64550 REMARK 290 SMTRY3 22 1.000000 0.000000 0.000000 27.54850 REMARK 290 SMTRY1 23 0.000000 0.000000 -1.000000 82.64550 REMARK 290 SMTRY2 23 0.000000 1.000000 0.000000 27.54850 REMARK 290 SMTRY3 23 1.000000 0.000000 0.000000 82.64550 REMARK 290 SMTRY1 24 0.000000 0.000000 -1.000000 27.54850 REMARK 290 SMTRY2 24 0.000000 -1.000000 0.000000 27.54850 REMARK 290 SMTRY3 24 -1.000000 0.000000 0.000000 27.54850 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 8770 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15720 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -179.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 18420 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 30550 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -395.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 -1.000000 0.000000 137.74250 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 137.74250 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 137.74250 REMARK 350 BIOMT1 5 -1.000000 0.000000 0.000000 137.74250 REMARK 350 BIOMT2 5 0.000000 0.000000 -1.000000 137.74250 REMARK 350 BIOMT3 5 0.000000 -1.000000 0.000000 137.74250 REMARK 350 BIOMT1 6 0.000000 0.000000 -1.000000 137.74250 REMARK 350 BIOMT2 6 0.000000 -1.000000 0.000000 137.74250 REMARK 350 BIOMT3 6 -1.000000 0.000000 0.000000 137.74250 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 150 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 207 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 233 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 300 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -11 REMARK 465 GLY A -10 REMARK 465 SER A -9 REMARK 465 ASP A -8 REMARK 465 LYS A -7 REMARK 465 ILE A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 2 NZ REMARK 470 LYS A 69 CE NZ REMARK 470 LYS A 74 CE NZ REMARK 470 LYS A 80 CE NZ REMARK 470 GLU A 139 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 53 -158.61 -164.94 REMARK 500 ASP A 125 69.20 -151.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 140 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 81 NE2 REMARK 620 2 ASN A 88 OD1 88.2 REMARK 620 3 HIS A 92 NE2 99.1 91.8 REMARK 620 4 HOH A 199 O 84.9 81.1 171.7 REMARK 620 5 HOH A 208 O 93.0 169.5 98.3 88.6 REMARK 620 6 HOH A 256 O 162.9 101.0 95.0 82.3 75.4 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 140 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 141 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 142 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 143 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 282593 RELATED DB: TARGETDB DBREF 1VMJ A 1 139 UNP Q9WZI2 Q9WZI2_THEMA 1 139 SEQADV 1VMJ MET A -11 UNP Q9WZI2 EXPRESSION TAG SEQADV 1VMJ GLY A -10 UNP Q9WZI2 EXPRESSION TAG SEQADV 1VMJ SER A -9 UNP Q9WZI2 EXPRESSION TAG SEQADV 1VMJ ASP A -8 UNP Q9WZI2 EXPRESSION TAG SEQADV 1VMJ LYS A -7 UNP Q9WZI2 EXPRESSION TAG SEQADV 1VMJ ILE A -6 UNP Q9WZI2 EXPRESSION TAG SEQADV 1VMJ HIS A -5 UNP Q9WZI2 EXPRESSION TAG SEQADV 1VMJ HIS A -4 UNP Q9WZI2 EXPRESSION TAG SEQADV 1VMJ HIS A -3 UNP Q9WZI2 EXPRESSION TAG SEQADV 1VMJ HIS A -2 UNP Q9WZI2 EXPRESSION TAG SEQADV 1VMJ HIS A -1 UNP Q9WZI2 EXPRESSION TAG SEQADV 1VMJ HIS A 0 UNP Q9WZI2 EXPRESSION TAG SEQRES 1 A 151 MET GLY SER ASP LYS ILE HIS HIS HIS HIS HIS HIS MET SEQRES 2 A 151 LYS SER TYR ARG LYS GLU LEU TRP PHE HIS THR LYS ARG SEQRES 3 A 151 ARG ARG GLU PHE ILE ASN ILE THR PRO LEU LEU GLU GLU SEQRES 4 A 151 CYS VAL ARG GLU SER GLY ILE LYS GLU GLY LEU LEU LEU SEQRES 5 A 151 CYS ASN ALA MET HIS ILE THR ALA SER VAL PHE ILE ASN SEQRES 6 A 151 ASP ASP GLU PRO GLY LEU HIS HIS ASP PHE GLU VAL TRP SEQRES 7 A 151 LEU GLU LYS LEU ALA PRO GLU LYS PRO TYR SER GLN TYR SEQRES 8 A 151 LYS HIS ASN ASP THR GLY GLU ASP ASN ALA ASP ALA HIS SEQRES 9 A 151 LEU LYS ARG THR ILE MET GLY ARG GLU VAL VAL ILE ALA SEQRES 10 A 151 ILE THR ASP ARG LYS MET ASP LEU GLY PRO TRP GLU GLN SEQRES 11 A 151 VAL PHE TYR GLY GLU PHE ASP GLY MET ARG PRO LYS ARG SEQRES 12 A 151 VAL LEU VAL LYS ILE ILE GLY GLU HET NA A 140 1 HET SO4 A 141 5 HET SO4 A 142 5 HET SO4 A 143 5 HETNAM NA SODIUM ION HETNAM SO4 SULFATE ION FORMUL 2 NA NA 1+ FORMUL 3 SO4 3(O4 S 2-) FORMUL 6 HOH *213(H2 O) HELIX 1 1 ILE A 21 GLY A 33 1 13 HELIX 2 2 GLU A 56 ALA A 71 1 16 HELIX 3 3 PRO A 75 ASP A 83 5 9 HELIX 4 4 ASN A 88 GLY A 99 1 12 SHEET 1 A 5 LYS A 2 PHE A 10 0 SHEET 2 A 5 LYS A 130 GLU A 139 -1 O GLY A 138 N LYS A 2 SHEET 3 A 5 GLU A 36 ALA A 43 -1 N LEU A 40 O LYS A 135 SHEET 4 A 5 GLU A 101 THR A 107 -1 O ILE A 104 N LEU A 39 SHEET 5 A 5 LYS A 110 MET A 111 -1 O LYS A 110 N THR A 107 SHEET 1 B 3 GLU A 17 ASN A 20 0 SHEET 2 B 3 GLN A 118 GLU A 123 -1 O GLU A 123 N GLU A 17 SHEET 3 B 3 ALA A 48 ASN A 53 -1 N PHE A 51 O PHE A 120 LINK NE2 HIS A 81 NA NA A 140 1555 1555 2.25 LINK OD1 ASN A 88 NA NA A 140 1555 1555 2.49 LINK NE2 HIS A 92 NA NA A 140 1555 1555 2.11 LINK NA NA A 140 O HOH A 199 1555 1555 2.06 LINK NA NA A 140 O HOH A 208 1555 1555 2.24 LINK NA NA A 140 O HOH A 256 1555 1555 2.19 CISPEP 1 LYS A 74 PRO A 75 0 -2.28 SITE 1 AC1 6 HIS A 81 ASN A 88 HIS A 92 HOH A 199 SITE 2 AC1 6 HOH A 208 HOH A 256 SITE 1 AC2 10 HIS A 45 ILE A 46 THR A 47 TRP A 116 SITE 2 AC2 10 ARG A 128 HOH A 157 HOH A 238 HOH A 256 SITE 3 AC2 10 HOH A 279 HOH A 303 SITE 1 AC3 9 LYS A 74 PRO A 75 TYR A 76 SER A 77 SITE 2 AC3 9 HOH A 167 HOH A 198 HOH A 237 HOH A 255 SITE 3 AC3 9 HOH A 289 SITE 1 AC4 5 LYS A 6 GLU A 7 HOH A 187 HOH A 211 SITE 2 AC4 5 HOH A 280 CRYST1 110.194 110.194 110.194 90.00 90.00 90.00 P 43 3 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009075 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009075 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009075 0.00000